1 | |
---|
2 | ################################################################################ |
---|
3 | #This software was developed by the University of Tennessee as part of the |
---|
4 | #Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
5 | #project funded by the US National Science Foundation. |
---|
6 | # |
---|
7 | #See the license text in license.txt |
---|
8 | # |
---|
9 | #copyright 2009, University of Tennessee |
---|
10 | ################################################################################ |
---|
11 | |
---|
12 | """ |
---|
13 | Dialog panel to explore the P(r) inversion results for a range |
---|
14 | of D_max value. User picks a number of points and a range of |
---|
15 | distances, then can toggle between inversion outputs and see |
---|
16 | their distribution as a function of D_max. |
---|
17 | """ |
---|
18 | |
---|
19 | |
---|
20 | import wx |
---|
21 | import numpy as np |
---|
22 | import logging |
---|
23 | import sys |
---|
24 | |
---|
25 | logger = logging.getLogger(__name__) |
---|
26 | |
---|
27 | # Avoid Matplotlib complaining about the lack of legend on the plot |
---|
28 | import warnings |
---|
29 | warnings.simplefilter("ignore") |
---|
30 | |
---|
31 | # Import plotting classes |
---|
32 | from sas.sasgui.plottools.PlotPanel import PlotPanel |
---|
33 | from sas.sasgui.plottools import Data1D as Model1D |
---|
34 | from sas.sasgui.guiframe.gui_style import GUIFRAME_ID |
---|
35 | from sas.sasgui.plottools.plottables import Graph |
---|
36 | |
---|
37 | from .pr_widgets import PrTextCtrl |
---|
38 | |
---|
39 | # Default number of points on the output plot |
---|
40 | DEFAULT_NPTS = 10 |
---|
41 | # Default output parameter to plot |
---|
42 | DEFAULT_OUTPUT = 'Chi2/dof' |
---|
43 | |
---|
44 | class OutputPlot(PlotPanel): |
---|
45 | """ |
---|
46 | Plot panel used to show the selected results as a function |
---|
47 | of D_max |
---|
48 | """ |
---|
49 | ## Title for plottools |
---|
50 | window_caption = "D Explorer" |
---|
51 | |
---|
52 | def __init__(self, d_min, d_max, parent, id= -1, color=None, |
---|
53 | dpi=None, style=wx.NO_FULL_REPAINT_ON_RESIZE, **kwargs): |
---|
54 | """ |
---|
55 | Initialization. The parameters added to PlotPanel are: |
---|
56 | |
---|
57 | :param d_min: Minimum value of D_max to explore |
---|
58 | :param d_max: Maximum value of D_max to explore |
---|
59 | |
---|
60 | """ |
---|
61 | PlotPanel.__init__(self, parent, id=id, style=style, **kwargs) |
---|
62 | |
---|
63 | self.parent = parent |
---|
64 | self.min = d_min |
---|
65 | self.max = d_max |
---|
66 | self.npts = DEFAULT_NPTS |
---|
67 | |
---|
68 | step = (self.max - self.min) / (self.npts - 1) |
---|
69 | self.x = np.arange(self.min, self.max + step * 0.01, step) |
---|
70 | dx = np.zeros(len(self.x)) |
---|
71 | y = np.ones(len(self.x)) |
---|
72 | dy = np.zeros(len(self.x)) |
---|
73 | |
---|
74 | # Plot area |
---|
75 | self.plot = Model1D(self.x, y=y, dy=dy) |
---|
76 | self.plot.name = DEFAULT_OUTPUT |
---|
77 | self.plot.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM |
---|
78 | |
---|
79 | # Graph |
---|
80 | self.graph = Graph() |
---|
81 | self.graph.xaxis(r"\rm{D_{max}}", 'A') |
---|
82 | self.graph.yaxis(r"\rm{%s}" % DEFAULT_OUTPUT, "") |
---|
83 | self.graph.add(self.plot) |
---|
84 | self.graph.render(self) |
---|
85 | |
---|
86 | self.toolbar.DeleteToolByPos(0) |
---|
87 | self.toolbar.DeleteToolByPos(8) |
---|
88 | self.toolbar.Realize() |
---|
89 | |
---|
90 | def onContextMenu(self, event): |
---|
91 | """ |
---|
92 | Default context menu for the plot panel |
---|
93 | |
---|
94 | :TODO: Would be nice to add printing and log/linear scales. |
---|
95 | The current version of plottools no longer plays well with |
---|
96 | plots outside of guiframe. Guiframe team needs to fix this. |
---|
97 | """ |
---|
98 | # Slicer plot popup menu |
---|
99 | wx_id = wx.NewId() |
---|
100 | slicerpop = wx.Menu() |
---|
101 | slicerpop.Append(wx_id, '&Save image', 'Save image as PNG') |
---|
102 | wx.EVT_MENU(self, wx_id, self.onSaveImage) |
---|
103 | |
---|
104 | wx_id = wx.NewId() |
---|
105 | slicerpop.AppendSeparator() |
---|
106 | slicerpop.Append(wx_id, '&Reset Graph') |
---|
107 | wx.EVT_MENU(self, wx_id, self.onResetGraph) |
---|
108 | |
---|
109 | pos = event.GetPosition() |
---|
110 | pos = self.ScreenToClient(pos) |
---|
111 | self.PopupMenu(slicerpop, pos) |
---|
112 | |
---|
113 | class Results(object): |
---|
114 | """ |
---|
115 | Class to hold the inversion output parameters |
---|
116 | as a function of D_max |
---|
117 | """ |
---|
118 | def __init__(self): |
---|
119 | """ |
---|
120 | Initialization. Create empty arrays |
---|
121 | and dictionary of labels. |
---|
122 | """ |
---|
123 | # Array of output for each inversion |
---|
124 | self.chi2 = [] |
---|
125 | self.osc = [] |
---|
126 | self.pos = [] |
---|
127 | self.pos_err = [] |
---|
128 | self.rg = [] |
---|
129 | self.iq0 = [] |
---|
130 | self.bck = [] |
---|
131 | self.d_max = [] |
---|
132 | |
---|
133 | # Dictionary of outputs |
---|
134 | self.outputs = {} |
---|
135 | self.outputs['Chi2/dof'] = [r"\chi^2/dof", "a.u.", self.chi2] |
---|
136 | self.outputs['Oscillation parameter'] = ["Osc", "a.u.", self.osc] |
---|
137 | self.outputs['Positive fraction'] = ["P^+", "a.u.", self.pos] |
---|
138 | self.outputs['1-sigma positive fraction'] = [r"P^+_{1\ \sigma}", |
---|
139 | "a.u.", self.pos_err] |
---|
140 | self.outputs['Rg'] = ["R_g", "A", self.rg] |
---|
141 | self.outputs['I(q=0)'] = ["I(q=0)", "1/A", self.iq0] |
---|
142 | self.outputs['Background'] = ["Bck", "1/A", self.bck] |
---|
143 | |
---|
144 | class ExploreDialog(wx.Dialog): |
---|
145 | """ |
---|
146 | The explorer dialog box. This dialog is meant to be |
---|
147 | invoked by the InversionControl class. |
---|
148 | """ |
---|
149 | |
---|
150 | def __init__(self, pr_state, nfunc, *args, **kwds): |
---|
151 | """ |
---|
152 | Initialization. The parameters added to Dialog are: |
---|
153 | |
---|
154 | :param pr_state: sas.sascalc.pr.invertor.Invertor object |
---|
155 | :param nfunc: Number of terms in the expansion |
---|
156 | |
---|
157 | """ |
---|
158 | kwds["style"] = wx.RESIZE_BORDER | wx.DEFAULT_DIALOG_STYLE |
---|
159 | wx.Dialog.__init__(self, *args, **kwds) |
---|
160 | |
---|
161 | # Initialize Results object |
---|
162 | self.results = Results() |
---|
163 | |
---|
164 | self.pr_state = pr_state |
---|
165 | self._default_min = 0.9 * self.pr_state.d_max |
---|
166 | self._default_max = 1.1 * self.pr_state.d_max |
---|
167 | self.nfunc = nfunc |
---|
168 | |
---|
169 | # Control for number of points |
---|
170 | self.npts_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER, |
---|
171 | size=(60, 20)) |
---|
172 | # Control for the minimum value of D_max |
---|
173 | self.dmin_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER, |
---|
174 | size=(60, 20)) |
---|
175 | # Control for the maximum value of D_max |
---|
176 | self.dmax_ctl = PrTextCtrl(self, -1, style=wx.TE_PROCESS_ENTER, |
---|
177 | size=(60, 20)) |
---|
178 | |
---|
179 | # Output selection box for the y axis |
---|
180 | self.output_box = None |
---|
181 | |
---|
182 | # Create the plot object |
---|
183 | self.plotpanel = OutputPlot(self._default_min, self._default_max, |
---|
184 | self, -1, style=wx.RAISED_BORDER) |
---|
185 | |
---|
186 | # Create the layout of the dialog |
---|
187 | self.__do_layout() |
---|
188 | self.Fit() |
---|
189 | |
---|
190 | # Calculate exploration results |
---|
191 | self._recalc() |
---|
192 | # Graph the default output curve |
---|
193 | self._plot_output() |
---|
194 | |
---|
195 | class Event(object): |
---|
196 | """ |
---|
197 | Class that holds the content of the form |
---|
198 | """ |
---|
199 | ## Number of points to be plotted |
---|
200 | npts = 0 |
---|
201 | ## Minimum value of D_max |
---|
202 | dmin = 0 |
---|
203 | ## Maximum value of D_max |
---|
204 | dmax = 0 |
---|
205 | |
---|
206 | def _get_values(self, event=None): |
---|
207 | """ |
---|
208 | Invoked when the user changes a value of the form. |
---|
209 | Check that the values are of the right type. |
---|
210 | |
---|
211 | :return: ExploreDialog.Event object if the content is good, |
---|
212 | None otherwise |
---|
213 | """ |
---|
214 | # Flag to make sure that all values are good |
---|
215 | flag = True |
---|
216 | |
---|
217 | # Empty ExploreDialog.Event content |
---|
218 | content_event = self.Event() |
---|
219 | |
---|
220 | # Read each text control and make sure the type is valid |
---|
221 | # Let the user know if a type is invalid by changing the |
---|
222 | # background color of the control. |
---|
223 | try: |
---|
224 | content_event.npts = int(self.npts_ctl.GetValue()) |
---|
225 | self.npts_ctl.SetBackgroundColour(wx.WHITE) |
---|
226 | self.npts_ctl.Refresh() |
---|
227 | except: |
---|
228 | flag = False |
---|
229 | self.npts_ctl.SetBackgroundColour("pink") |
---|
230 | self.npts_ctl.Refresh() |
---|
231 | |
---|
232 | try: |
---|
233 | content_event.dmin = float(self.dmin_ctl.GetValue()) |
---|
234 | self.dmin_ctl.SetBackgroundColour(wx.WHITE) |
---|
235 | self.dmin_ctl.Refresh() |
---|
236 | except: |
---|
237 | flag = False |
---|
238 | self.dmin_ctl.SetBackgroundColour("pink") |
---|
239 | self.dmin_ctl.Refresh() |
---|
240 | |
---|
241 | try: |
---|
242 | content_event.dmax = float(self.dmax_ctl.GetValue()) |
---|
243 | self.dmax_ctl.SetBackgroundColour(wx.WHITE) |
---|
244 | self.dmax_ctl.Refresh() |
---|
245 | except: |
---|
246 | flag = False |
---|
247 | self.dmax_ctl.SetBackgroundColour("pink") |
---|
248 | self.dmax_ctl.Refresh() |
---|
249 | |
---|
250 | # If the content of the form is valid, return the content, |
---|
251 | # otherwise return None |
---|
252 | if flag: |
---|
253 | if event is not None: |
---|
254 | event.Skip(True) |
---|
255 | return content_event |
---|
256 | else: |
---|
257 | return None |
---|
258 | |
---|
259 | def _plot_output(self, event=None): |
---|
260 | """ |
---|
261 | Invoked when a new output type is selected for plotting, |
---|
262 | or when a new computation is finished. |
---|
263 | """ |
---|
264 | # Get the output type selection |
---|
265 | output_type = self.output_box.GetString(self.output_box.GetSelection()) |
---|
266 | |
---|
267 | # If the selected output type is part of the results ojbect, |
---|
268 | # display the results. |
---|
269 | # Note: by design, the output type should always be part of the |
---|
270 | # results object. |
---|
271 | if output_type in self.results.outputs: |
---|
272 | self.plotpanel.plot.x = self.results.d_max |
---|
273 | self.plotpanel.plot.y = self.results.outputs[output_type][2] |
---|
274 | self.plotpanel.plot.name = '_nolegend_' |
---|
275 | y_label = "\\rm{%s}" % self.results.outputs[output_type][0] |
---|
276 | self.plotpanel.graph.yaxis(y_label, |
---|
277 | self.results.outputs[output_type][1]) |
---|
278 | |
---|
279 | # Redraw |
---|
280 | self.plotpanel.graph.render(self.plotpanel) |
---|
281 | self.plotpanel.subplot.figure.canvas.draw_idle() |
---|
282 | else: |
---|
283 | msg = "ExploreDialog: the Results object's dictionary " |
---|
284 | msg += "does not contain " |
---|
285 | msg += "the [%s] output type. This must be indicative of " |
---|
286 | msg += "a change in the " % str(output_type) |
---|
287 | msg += "ExploreDialog code." |
---|
288 | logger.error(msg) |
---|
289 | |
---|
290 | def __do_layout(self): |
---|
291 | """ |
---|
292 | Do the layout of the dialog |
---|
293 | """ |
---|
294 | # Dialog box properties |
---|
295 | self.SetTitle("D_max Explorer") |
---|
296 | self.SetSize((600, 595)) |
---|
297 | |
---|
298 | sizer_main = wx.BoxSizer(wx.VERTICAL) |
---|
299 | sizer_button = wx.BoxSizer(wx.HORIZONTAL) |
---|
300 | sizer_params = wx.GridBagSizer(5, 5) |
---|
301 | |
---|
302 | iy = 0 |
---|
303 | ix = 0 |
---|
304 | label_npts = wx.StaticText(self, -1, "Npts") |
---|
305 | sizer_params.Add(label_npts, (iy, ix), (1, 1), |
---|
306 | wx.LEFT | wx.EXPAND | wx.ADJUST_MINSIZE, 15) |
---|
307 | ix += 1 |
---|
308 | sizer_params.Add(self.npts_ctl, (iy, ix), (1, 1), |
---|
309 | wx.EXPAND | wx.ADJUST_MINSIZE, 0) |
---|
310 | self.npts_ctl.SetValue("%g" % DEFAULT_NPTS) |
---|
311 | |
---|
312 | ix += 1 |
---|
313 | label_dmin = wx.StaticText(self, -1, "Min Distance [A]") |
---|
314 | sizer_params.Add(label_dmin, (iy, ix), (1, 1), |
---|
315 | wx.LEFT | wx.EXPAND | wx.ADJUST_MINSIZE, 15) |
---|
316 | ix += 1 |
---|
317 | sizer_params.Add(self.dmin_ctl, (iy, ix), (1, 1), |
---|
318 | wx.EXPAND | wx.ADJUST_MINSIZE, 0) |
---|
319 | self.dmin_ctl.SetValue(str(self._default_min)) |
---|
320 | |
---|
321 | ix += 1 |
---|
322 | label_dmax = wx.StaticText(self, -1, "Max Distance [A]") |
---|
323 | sizer_params.Add(label_dmax, (iy, ix), (1, 1), |
---|
324 | wx.LEFT | wx.EXPAND | wx.ADJUST_MINSIZE, 15) |
---|
325 | ix += 1 |
---|
326 | sizer_params.Add(self.dmax_ctl, (iy, ix), (1, 1), |
---|
327 | wx.EXPAND | wx.ADJUST_MINSIZE, 0) |
---|
328 | self.dmax_ctl.SetValue(str(self._default_max)) |
---|
329 | |
---|
330 | # Ouput selection box |
---|
331 | selection_msg = wx.StaticText(self, -1, "Select a dependent variable:") |
---|
332 | self.output_box = wx.ComboBox(self, -1, style=wx.CB_READONLY) |
---|
333 | for item in self.results.outputs.keys(): |
---|
334 | self.output_box.Append(item, "") |
---|
335 | self.output_box.SetStringSelection(DEFAULT_OUTPUT) |
---|
336 | |
---|
337 | output_sizer = wx.GridBagSizer(5, 5) |
---|
338 | output_sizer.Add(selection_msg, (0, 0), (1, 1), |
---|
339 | wx.LEFT | wx.EXPAND | wx.ADJUST_MINSIZE, 10) |
---|
340 | output_sizer.Add(self.output_box, (0, 1), (1, 2), |
---|
341 | wx.LEFT | wx.EXPAND | wx.ADJUST_MINSIZE, 10) |
---|
342 | |
---|
343 | wx.EVT_COMBOBOX(self.output_box, -1, self._plot_output) |
---|
344 | sizer_main.Add(output_sizer, 0, wx.EXPAND | wx.ALL, 10) |
---|
345 | |
---|
346 | sizer_main.Add(self.plotpanel, 0, wx.EXPAND | wx.ALL, 10) |
---|
347 | sizer_main.SetItemMinSize(self.plotpanel, 400, 400) |
---|
348 | |
---|
349 | sizer_main.Add(sizer_params, 0, wx.EXPAND | wx.ALL, 10) |
---|
350 | static_line_3 = wx.StaticLine(self, -1) |
---|
351 | sizer_main.Add(static_line_3, 0, wx.EXPAND, 0) |
---|
352 | |
---|
353 | # Bottom area with the close button |
---|
354 | sizer_button.Add((20, 20), 1, wx.EXPAND | wx.ADJUST_MINSIZE, 0) |
---|
355 | button_OK = wx.Button(self, wx.ID_OK, "Close") |
---|
356 | sizer_button.Add(button_OK, 0, wx.LEFT | wx.RIGHT | wx.ADJUST_MINSIZE, 10) |
---|
357 | |
---|
358 | sizer_main.Add(sizer_button, 0, wx.EXPAND | wx.BOTTOM | wx.TOP, 10) |
---|
359 | self.SetAutoLayout(True) |
---|
360 | self.SetSizer(sizer_main) |
---|
361 | self.Layout() |
---|
362 | self.Centre() |
---|
363 | |
---|
364 | # Bind the Enter key to recalculation |
---|
365 | self.Bind(wx.EVT_TEXT_ENTER, self._recalc) |
---|
366 | |
---|
367 | def set_plot_unfocus(self): |
---|
368 | """ |
---|
369 | Not implemented |
---|
370 | """ |
---|
371 | pass |
---|
372 | |
---|
373 | def send_focus_to_datapanel(self, name): |
---|
374 | """ |
---|
375 | The GUI manager sometimes calls this method |
---|
376 | TODO: refactor this |
---|
377 | """ |
---|
378 | pass |
---|
379 | |
---|
380 | def _recalc(self, event=None): |
---|
381 | """ |
---|
382 | Invoked when the user changed a value on the form. |
---|
383 | Process the form and compute the output to be plottted. |
---|
384 | """ |
---|
385 | # Get the content of the form |
---|
386 | content = self._get_values() |
---|
387 | # If the content of the form is invalid, return and do nothing |
---|
388 | if content is None: |
---|
389 | return |
---|
390 | |
---|
391 | # Results object to store the computation outputs. |
---|
392 | results = Results() |
---|
393 | |
---|
394 | # Loop over d_max values |
---|
395 | for i in range(content.npts): |
---|
396 | temp = (content.dmax - content.dmin) / (content.npts - 1.0) |
---|
397 | d = content.dmin + i * temp |
---|
398 | |
---|
399 | self.pr_state.d_max = d |
---|
400 | try: |
---|
401 | out, cov = self.pr_state.invert(self.nfunc) |
---|
402 | |
---|
403 | # Store results |
---|
404 | iq0 = self.pr_state.iq0(out) |
---|
405 | rg = self.pr_state.rg(out) |
---|
406 | pos = self.pr_state.get_positive(out) |
---|
407 | pos_err = self.pr_state.get_pos_err(out, cov) |
---|
408 | osc = self.pr_state.oscillations(out) |
---|
409 | |
---|
410 | results.d_max.append(self.pr_state.d_max) |
---|
411 | results.bck.append(self.pr_state.background) |
---|
412 | results.chi2.append(self.pr_state.chi2) |
---|
413 | results.iq0.append(iq0) |
---|
414 | results.rg.append(rg) |
---|
415 | results.pos.append(pos) |
---|
416 | results.pos_err.append(pos_err) |
---|
417 | results.osc.append(osc) |
---|
418 | except Exception as exc: |
---|
419 | # This inversion failed, skip this D_max value |
---|
420 | msg = "ExploreDialog: inversion failed " |
---|
421 | msg += "for D_max=%s\n%s" % (str(d), exc) |
---|
422 | logger.error(msg) |
---|
423 | |
---|
424 | self.results = results |
---|
425 | |
---|
426 | # Plot the selected output |
---|
427 | self._plot_output() |
---|