invariant_state.py @ 23ff8d5

Last change on this file since 23ff8d5 was e9920cd, checked in by krzywon, 6 years ago
Add SasView? version to report files. refs #1179
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1	"""
2	State class for the invariant UI
3	"""
4
5	# import time
6	import os
7	import sys
8	import logging
9	import copy
10	import sas.sascalc.dataloader
11	# from xml.dom.minidom import parse
12	from lxml import etree
13	from sas.sascalc.dataloader.readers.cansas_reader import Reader as CansasReader
14	from sas.sasgui.guiframe.report_image_handler import ReportImageHandler
15	from sas.sascalc.dataloader.readers.cansas_reader import get_content
16	from sas.sasgui.guiframe.utils import format_number
17	from sas.sasgui.guiframe.gui_style import GUIFRAME_ID
18	from sas.sasgui.guiframe.dataFitting import Data1D
19
20	logger = logging.getLogger(__name__)
21
22	INVNODE_NAME = 'invariant'
23	CANSAS_NS = "cansas1d/1.0"
24
25	# default state
26	DEFAULT_STATE = {'file': 'None',
27	'compute_num':0,
28	'state_num':0,
29	'is_time_machine':False,
30	'background_tcl':0.0,
31	'scale_tcl':1.0,
32	'contrast_tcl':1.0,
33	'porod_constant_tcl':'',
34	'npts_low_tcl':10,
35	'npts_high_tcl':10,
36	'power_high_tcl':4.0,
37	'power_low_tcl': 4.0,
38	'enable_high_cbox':False,
39	'enable_low_cbox':False,
40	'guinier': True,
41	'power_law_high': False,
42	'power_law_low': False,
43	'fit_enable_high': False,
44	'fit_enable_low': False,
45	'fix_enable_high':True,
46	'fix_enable_low':True,
47	'volume_tcl':'',
48	'volume_err_tcl':'',
49	'surface_tcl':'',
50	'surface_err_tcl':''}
51	# list of states: This list will be filled as panel
52	# init and the number of states increases
53	state_list = {}
54	bookmark_list = {}
55	# list of input parameters (will be filled up on panel init) used by __str__
56	input_list = {'background_tcl':0,
57	'scale_tcl':0,
58	'contrast_tcl':0,
59	'porod_constant_tcl':'',
60	'npts_low_tcl':0,
61	'npts_high_tcl':0,
62	'power_high_tcl':0,
63	'power_low_tcl': 0}
64	# list of output parameters (order sensitive) used by __str__
65	output_list = [["qstar_low", "Q* from low Q extrapolation [1/(cm*A)]"],
66	["qstar_low_err", "dQ* from low Q extrapolation"],
67	["qstar_low_percent", "Q* percent from low Q extrapolation"],
68	["qstar", "Q* from data [1/(cm*A)]"],
69	["qstar_err", "dQ* from data"],
70	["qstar_percent", "Q* percent from data"],
71	["qstar_high", "Q* from high Q extrapolation [1/(cm*A)]"],
72	["qstar_high_err", "dQ* from high Q extrapolation"],
73	["qstar_high_percent", "Q* percent from low Q extrapolation"],
74	["qstar_total", "total Q* [1/(cm*A)]"],
75	["qstar_total_err", "total dQ*"],
76	["volume", "volume fraction"],
77	["volume_err", "volume fraction error"],
78	["surface", "specific surface"],
79	["surface_err", "specific surface error"]]
80
81
82
83	class InvariantState(object):
84	"""
85	Class to hold the state information of the InversionControl panel.
86	"""
87	def __init__(self):
88	"""
89	Default values
90	"""
91	# Input
92	self.file = None
93	self.data = Data1D(x=[], y=[], dx=None, dy=None)
94	self.theory_lowQ = Data1D(x=[], y=[], dy=None)
95	self.theory_lowQ.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM
96	self.theory_highQ = Data1D(x=[], y=[], dy=None)
97	self.theory_highQ.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM
98	# self.is_time_machine = False
99	self.saved_state = DEFAULT_STATE
100	self.state_list = state_list
101	self.bookmark_list = bookmark_list
102	self.input_list = input_list
103	self.output_list = output_list
104
105	self.compute_num = 0
106	self.state_num = 0
107	self.timestamp = ('00:00:00', '00/00/0000')
108	self.container = None
109	# plot image
110	self.wximbmp = None
111	# report_html strings
112	import sas.sasgui.perspectives.invariant as invariant
113	path = invariant.get_data_path(media='media')
114	path_report_html = os.path.join(path, "report_template.html")
115	html_template = open(path_report_html, "r")
116	self.template_str = html_template.read()
117	self.report_str = self.template_str
118	# self.report_str_save = None
119	html_template.close()
120
121	def __str__(self):
122	"""
123	Pretty print
124
125	: return: string representing the state
126	"""
127	# Input string
128	compute_num = self.saved_state['compute_num']
129	compute_state = self.state_list[str(compute_num)]
130	my_time, date = self.timestamp
131	file_name = self.file
132	from sas.sasview.__init__ import __version__ as sasview_version
133
134	state_num = int(self.saved_state['state_num'])
135	state = "\n[Invariant computation for %s: " % file_name
136	state += "performed at %s on %s] " % (my_time, date)
137	state += "[SasView v%s]\n" % (sasview_version)
138	state += "State No.: %d \n" % state_num
139	state += "\n=== Inputs ===\n"
140
141	# text ctl general inputs ( excluding extrapolation text ctl)
142	for key, value in self.input_list.iteritems():
143	if value == '':
144	continue
145	key_split = key.split('_')
146	max_ind = len(key_split) - 1
147	if key_split[max_ind] == 'tcl':
148	name = ""
149	if key_split[1] == 'low' or key_split[1] == 'high':
150	continue
151	for ind in range(0, max_ind):
152	name += " %s" % key_split[ind]
153	state += "%s: %s\n" % (name.lstrip(" "), value)
154
155	# other input parameters
156	extra_lo = compute_state['enable_low_cbox']
157	if compute_state['enable_low_cbox']:
158	if compute_state['guinier']:
159	extra_lo = 'Guinier'
160	else:
161	extra_lo = 'Power law'
162	extra_hi = compute_state['enable_high_cbox']
163	if compute_state['enable_high_cbox']:
164	extra_hi = 'Power law'
165	state += "\nExtrapolation: High=%s; Low=%s\n" % (extra_hi, extra_lo)
166	low_off = False
167	high_off = False
168	for key, value in self.input_list.iteritems():
169	key_split = key.split('_')
170	max_ind = len(key_split) - 1
171	if key_split[max_ind] == 'tcl':
172	name = ""
173	# check each buttons whether or not ON or OFF
174	if key_split[1] == 'low' or key_split[1] == 'high':
175	if not compute_state['enable_low_cbox'] and \
176	key_split[max_ind - 1] == 'low':
177	low_off = True
178	continue
179	elif not compute_state['enable_high_cbox'] and \
180	key_split[max_ind - 1] == 'high':
181	high_off = True
182	continue
183	elif extra_lo == 'Guinier' and key_split[0] == 'power' and \
184	key_split[max_ind - 1] == 'low':
185	continue
186	for ind in range(0, max_ind):
187	name += " %s" % key_split[ind]
188	name = name.lstrip(" ")
189	if name == "power low":
190	if compute_state['fix_enable_low']:
191	name += ' (Fixed)'
192	else:
193	name += ' (Fitted)'
194	if name == "power high":
195	if compute_state['fix_enable_high']:
196	name += ' (Fixed)'
197	else:
198	name += ' (Fitted)'
199	state += "%s: %s\n" % (name, value)
200	# Outputs
201	state += "\n=== Outputs ==="
202	for item in output_list:
203	item_split = item[0].split('_')
204	# Exclude the extrapolation that turned off
205	if len(item_split) > 1:
206	if low_off and item_split[1] == 'low':
207	continue
208	if high_off and item_split[1] == 'high':
209	continue
210	max_ind = len(item_split) - 1
211	value = None
212	if hasattr(self.container, item[0]):
213	# Q* outputs
214	value = getattr(self.container, item[0])
215	else:
216	# other outputs than Q*
217	name = item[0] + "_tcl"
218	if name in self.saved_state.keys():
219	value = self.saved_state[name]
220
221	# Exclude the outputs w/''
222	if value == '':
223	continue
224	# Error outputs
225	if item_split[max_ind] == 'err':
226	state += "+- %s " % format_number(value)
227	# Percentage outputs
228	elif item_split[max_ind] == 'percent':
229	value = float(value) * 100
230	state += "(%s %s)" % (format_number(value), '%')
231	# Outputs
232	else:
233	state += "\n%s: %s " % (item[1],
234	format_number(value, high=True))
235	# Include warning msg
236	if self.container is not None:
237	state += "\n\nNote:\n" + self.container.warning_msg
238	return state
239
240	def clone_state(self):
241	"""
242	deepcopy the state
243	"""
244	return copy.deepcopy(self.saved_state)
245
246	def toXML(self, file="inv_state.inv", doc=None, entry_node=None):
247	"""
248	Writes the state of the InversionControl panel to file, as XML.
249
250	Compatible with standalone writing, or appending to an
251	already existing XML document. In that case, the XML document
252	is required. An optional entry node in the XML document
253	may also be given.
254
255	: param file: file to write to
256	: param doc: XML document object [optional]
257	: param entry_node: XML node within the document at which we will append the data [optional]
258	"""
259	# TODO: Get this to work
260	from xml.dom.minidom import getDOMImplementation
261	import time
262	timestamp = time.time()
263	# Check whether we have to write a standalone XML file
264	if doc is None:
265	impl = getDOMImplementation()
266
267	doc_type = impl.createDocumentType(INVNODE_NAME, "1.0", "1.0")
268
269	newdoc = impl.createDocument(None, INVNODE_NAME, doc_type)
270	top_element = newdoc.documentElement
271	else:
272	# We are appending to an existing document
273	newdoc = doc
274	top_element = newdoc.createElement(INVNODE_NAME)
275	if entry_node is None:
276	newdoc.documentElement.appendChild(top_element)
277	else:
278	entry_node.appendChild(top_element)
279
280	attr = newdoc.createAttribute("version")
281	attr.nodeValue = '1.0'
282	top_element.setAttributeNode(attr)
283
284	# File name
285	element = newdoc.createElement("filename")
286	if self.file is not None and self.file != '':
287	element.appendChild(newdoc.createTextNode(str(self.file)))
288	else:
289	element.appendChild(newdoc.createTextNode(str(file)))
290	top_element.appendChild(element)
291
292	element = newdoc.createElement("timestamp")
293	element.appendChild(newdoc.createTextNode(time.ctime(timestamp)))
294	attr = newdoc.createAttribute("epoch")
295	attr.nodeValue = str(timestamp)
296	element.setAttributeNode(attr)
297	top_element.appendChild(element)
298
299	# Current state
300	state = newdoc.createElement("state")
301	top_element.appendChild(state)
302
303	for name, value in self.saved_state.iteritems():
304	element = newdoc.createElement(str(name))
305	element.appendChild(newdoc.createTextNode(str(value)))
306	state.appendChild(element)
307
308	# State history list
309	history = newdoc.createElement("history")
310	top_element.appendChild(history)
311
312	for name, value in self.state_list.iteritems():
313	history_element = newdoc.createElement('state_' + str(name))
314	for state_name, state_value in value.iteritems():
315	state_element = newdoc.createElement(str(state_name))
316	child = newdoc.createTextNode(str(state_value))
317	state_element.appendChild(child)
318	history_element.appendChild(state_element)
319	# history_element.appendChild(state_list_element)
320	history.appendChild(history_element)
321
322	# Bookmarks bookmark_list[self.bookmark_num] = [\
323	# my_time,date,state,comp_state]
324	bookmark = newdoc.createElement("bookmark")
325	top_element.appendChild(bookmark)
326	item_list = ['time', 'date', 'state', 'comp_state']
327	for name, value_list in self.bookmark_list.iteritems():
328	element = newdoc.createElement('mark_' + str(name))
329	_, date, state, comp_state = value_list
330	time_element = newdoc.createElement('time')
331	time_element.appendChild(newdoc.createTextNode(str(value_list[0])))
332	date_element = newdoc.createElement('date')
333	date_element.appendChild(newdoc.createTextNode(str(value_list[1])))
334	state_list_element = newdoc.createElement('state')
335	comp_state_list_element = newdoc.createElement('comp_state')
336	for state_name, state_value in value_list[2].iteritems():
337	state_element = newdoc.createElement(str(state_name))
338	child = newdoc.createTextNode(str(state_value))
339	state_element.appendChild(child)
340	state_list_element.appendChild(state_element)
341	for comp_name, comp_value in value_list[3].iteritems():
342	comp_element = newdoc.createElement(str(comp_name))
343	comp_element.appendChild(newdoc.createTextNode(str(comp_value)))
344	comp_state_list_element.appendChild(comp_element)
345	element.appendChild(time_element)
346	element.appendChild(date_element)
347	element.appendChild(state_list_element)
348	element.appendChild(comp_state_list_element)
349	bookmark.appendChild(element)
350
351	# Save the file
352	if doc is None:
353	fd = open('test000', 'w')
354	fd.write(newdoc.toprettyxml())
355	fd.close()
356	return None
357	else:
358	return newdoc
359
360	def fromXML(self, file=None, node=None):
361	"""
362	Load invariant states from a file
363
364	: param file: .inv file
365	: param node: node of a XML document to read from
366	"""
367	if file is not None:
368	msg = "InvariantSate no longer supports non-CanSAS"
369	msg += " format for invariant files"
370	raise RuntimeError, msg
371
372	if node.get('version')\
373	and node.get('version') == '1.0':
374
375	# Get file name
376	entry = get_content('ns:filename', node)
377	if entry is not None:
378	file_name = entry.text.strip()
379
380	# Get time stamp
381	entry = get_content('ns:timestamp', node)
382	if entry is not None and entry.get('epoch'):
383	try:
384	timestamp = (entry.get('epoch'))
385	except:
386	msg = "InvariantSate.fromXML: Could not read"
387	msg += " timestamp\n %s" % sys.exc_value
388	logger.error(msg)
389
390	# Parse bookmarks
391	entry_bookmark = get_content('ns:bookmark', node)
392
393	for ind in range(1, len(entry_bookmark) + 1):
394	temp_state = {}
395	temp_bookmark = {}
396	entry = get_content('ns:mark_%s' % ind, entry_bookmark)
397
398	if entry is not None:
399	my_time = get_content('ns:time', entry)
400	val_time = str(my_time.text.strip())
401	date = get_content('ns:date', entry)
402	val_date = str(date.text.strip())
403	state_entry = get_content('ns:state', entry)
404	for item in DEFAULT_STATE:
405	input_field = get_content('ns:%s' % item, state_entry)
406	val = str(input_field.text.strip())
407	if input_field is not None:
408	temp_state[item] = val
409	comp_entry = get_content('ns:comp_state', entry)
410
411	for item in DEFAULT_STATE:
412	input_field = get_content('ns:%s' % item, comp_entry)
413	val = str(input_field.text.strip())
414	if input_field is not None:
415	temp_bookmark[item] = val
416	try:
417	self.bookmark_list[ind] = [val_time, val_date, temp_state, temp_bookmark]
418	except:
419	raise "missing components of bookmarks..."
420	# Parse histories
421	entry_history = get_content('ns:history', node)
422
423	for ind in range(0, len(entry_history)):
424	temp_state = {}
425	entry = get_content('ns:state_%s' % ind, entry_history)
426
427	if entry is not None:
428	for item in DEFAULT_STATE:
429	input_field = get_content('ns:%s' % item, entry)
430	if input_field.text is not None:
431	val = str(input_field.text.strip())
432	else:
433	val = ''
434	if input_field is not None:
435	temp_state[item] = val
436	self.state_list[str(ind)] = temp_state
437
438	# Parse current state (ie, saved_state)
439	entry = get_content('ns:state', node)
440	if entry is not None:
441	for item in DEFAULT_STATE:
442	input_field = get_content('ns:%s' % item, entry)
443	if input_field.text is not None:
444	val = str(input_field.text.strip())
445	else:
446	val = ''
447	if input_field is not None:
448	self.set_saved_state(name=item, value=val)
449	self.file = file_name
450
451	def set_report_string(self):
452	"""
453	Get the values (strings) from __str__ for report
454	"""
455	strings = self.__str__()
456
457	# default string values
458	for num in range(1, 19):
459	exec "s_%s = 'NA'" % str(num)
460	lines = strings.split('\n')
461	# get all string values from __str__()
462	for line in range(0, len(lines)):
463	if line == 1:
464	s_1 = lines[1]
465	elif line == 2:
466	s_2 = lines[2]
467	else:
468	item = lines[line].split(':')
469	item[0] = item[0].strip()
470	if item[0] == "scale":
471	s_3 = item[1]
472	elif item[0] == "porod constant":
473	s_4 = item[1]
474	elif item[0] == "background":
475	s_5 = item[1]
476	elif item[0] == "contrast":
477	s_6 = item[1]
478	elif item[0] == "Extrapolation":
479	extra = item[1].split(";")
480	bool_0 = extra[0].split("=")
481	bool_1 = extra[1].split("=")
482	s_8 = " " + bool_0[0] + "Q region = " + bool_0[1]
483	s_7 = " " + bool_1[0] + "Q region = " + bool_1[1]
484	elif item[0] == "npts low":
485	s_9 = item[1]
486	elif item[0] == "npts high":
487	s_10 = item[1]
488	elif item[0] == "volume fraction":
489	val = item[1].split("+-")[0].strip()
490	error = item[1].split("+-")[1].strip()
491	s_17 = val + " ± " + error
492	elif item[0] == "specific surface":
493	val = item[1].split("+-")[0].strip()
494	error = item[1].split("+-")[1].strip()
495	s_18 = val + " ± " + error
496	elif item[0].split("(")[0].strip() == "power low":
497	s_11 = item[0] + " =" + item[1]
498	elif item[0].split("(")[0].strip() == "power high":
499	s_12 = item[0] + " =" + item[1]
500	elif item[0].split("[")[0].strip() == "Q* from low Q extrapolation":
501	# looks messy but this way the symbols +_ and % work on html
502	val = item[1].split("+-")[0].strip()
503	error = item[1].split("+-")[1].strip()
504	err = error.split("%")[0].strip()
505	percent = error.split("%")[1].strip()
506	s_13 = val + " ± " + err + "&#37" + percent
507	elif item[0].split("[")[0].strip() == "Q* from data":
508	val = item[1].split("+-")[0].strip()
509	error = item[1].split("+-")[1].strip()
510	err = error.split("%")[0].strip()
511	percent = error.split("%")[1].strip()
512	s_14 = val + " ± " + err + "&#37" + percent
513	elif item[0].split("[")[0].strip() == "Q* from high Q extrapolation":
514	val = item[1].split("+-")[0].strip()
515	error = item[1].split("+-")[1].strip()
516	err = error.split("%")[0].strip()
517	percent = error.split("%")[1].strip()
518	s_15 = val + " ± " + err + "&#37" + percent
519	elif item[0].split("[")[0].strip() == "total Q*":
520	val = item[1].split("+-")[0].strip()
521	error = item[1].split("+-")[1].strip()
522	s_16 = val + " ± " + error
523	else:
524	continue
525
526	s_1 = self._check_html_format(s_1)
527	file_name = self._check_html_format(self.file)
528
529	# make plot image
530	self.set_plot_state(extra_high=bool_0[1], extra_low=bool_1[1])
531	# get ready for report with setting all the html strings
532	self.report_str = str(self.template_str) % (s_1, s_2,
533	s_3, s_4, s_5, s_6, s_7, s_8,
534	s_9, s_10, s_11, s_12, s_13, s_14, s_15,
535	s_16, s_17, s_18, file_name, "%s")
536
537	def _check_html_format(self, name):
538	"""
539	Check string '%' for html format
540	"""
541	if name.count('%'):
542	name = name.replace('%', '&#37')
543
544	return name
545
546	def set_saved_state(self, name, value):
547	"""
548	Set the state list
549
550	: param name: name of the state component
551	: param value: value of the state component
552	"""
553	rb_list = [['power_law_low', 'guinier'],
554	['fit_enable_low', 'fix_enable_low'],
555	['fit_enable_high', 'fix_enable_high']]
556
557	self.name = value
558	self.saved_state[name] = value
559	# set the count part of radio button clicked
560	# False for the saved_state
561	for title, content in rb_list:
562	if name == title:
563	name = content
564	value = False
565	elif name == content:
566	name = title
567	value = False
568	self.saved_state[name] = value
569	self.state_num = self.saved_state['state_num']
570
571	def set_plot_state(self, extra_high=False, extra_low=False):
572	"""
573	Build image state that wx.html understand
574	by plotting, putting it into wx.FileSystem image object
575
576	: extrap_high,extra_low: low/high extrapolations
577	are possible extra-plots
578	"""
579	# some imports
580	import wx
581	import matplotlib.pyplot as plt
582	from matplotlib.backends.backend_agg import FigureCanvasAgg
583
584	# we use simple plot, not plotpanel
585	# make matlab figure
586	fig = plt.figure()
587	fig.set_facecolor('w')
588	graph = fig.add_subplot(111)
589
590	# data plot
591	graph.errorbar(self.data.x, self.data.y, yerr=self.data.dy, fmt='o')
592	# low Q extrapolation fit plot
593	if not extra_low == 'False':
594	graph.plot(self.theory_lowQ.x, self.theory_lowQ.y)
595	# high Q extrapolation fit plot
596	if not extra_high == 'False':
597	graph.plot(self.theory_highQ.x, self.theory_highQ.y)
598	graph.set_xscale("log", nonposx='clip')
599	graph.set_yscale("log", nonposy='clip')
600	graph.set_xlabel('$\\rm{Q}(\\AA^{-1})$', fontsize=12)
601	graph.set_ylabel('$\\rm{Intensity}(cm^{-1})$', fontsize=12)
602	canvas = FigureCanvasAgg(fig)
603	# actually make image
604	canvas.draw()
605
606	# make python.Image object
607	# size
608	w, h = canvas.get_width_height()
609	# convert to wx.Image
610	wximg = wx.EmptyImage(w, h)
611	# wxim.SetData(img.convert('RGB').tostring() )
612	wximg.SetData(canvas.tostring_rgb())
613	# get the dynamic image for the htmlwindow
614	wximgbmp = wx.BitmapFromImage(wximg)
615	# store the image in wx.FileSystem Object
616	imgs, refs = ReportImageHandler.set_figs([fig], [wximgbmp], 'inv')
617
618	self.wximgbmp = refs[0]
619	self.image = imgs[0]
620
621	class Reader(CansasReader):
622	"""
623	Class to load a .inv invariant file
624	"""
625	# # File type
626	type_name = "Invariant"
627
628	# # Wildcards
629	type = ["Invariant file (.inv)\|.inv",
630	"SASView file (.svs)\|.svs"]
631	# # List of allowed extensions
632	ext = ['.inv', '.INV', '.svs', 'SVS']
633
634	def __init__(self, call_back, cansas=True):
635	"""
636	Initialize the call-back method to be called
637	after we load a file
638
639	: param call_back: call-back method
640	: param cansas: True = files will be written/read in CanSAS format
641	False = write CanSAS format
642	"""
643	# # Call back method to be executed after a file is read
644	self.call_back = call_back
645	# # CanSAS format flag
646	self.cansas = cansas
647	self.state = None
648
649	def read(self, path):
650	"""
651	Load a new invariant state from file
652
653	: param path: file path
654	: return: None
655	"""
656	if self.cansas:
657	return self._read_cansas(path)
658	else:
659	return self._read_standalone(path)
660
661	def _read_standalone(self, path):
662	"""
663	Load a new invariant state from file.
664	The invariant node is assumed to be the top element.
665
666	: param path: file path
667	: return: None
668	"""
669	# Read the new state from file
670	state = InvariantState()
671
672	state.fromXML(file=path)
673
674	# Call back to post the new state
675	self.call_back(state)
676	return None
677
678	def _parse_state(self, entry):
679	"""
680	Read an invariant result from an XML node
681
682	: param entry: XML node to read from
683	: return: InvariantState object
684	"""
685	state = None
686	# Locate the invariant node
687	try:
688	nodes = entry.xpath('ns:%s' % INVNODE_NAME,
689	namespaces={'ns': CANSAS_NS})
690	# Create an empty state
691	if nodes != []:
692	state = InvariantState()
693	state.fromXML(node=nodes[0])
694	except:
695	msg = "XML document does not contain invariant"
696	msg += " information.\n %s" % sys.exc_value
697	logger.info(msg)
698	return state
699
700	def _read_cansas(self, path):
701	"""
702	Load data and invariant information from a CanSAS XML file.
703
704	: param path: file path
705	: return: Data1D object if a single SASentry was found,
706	or a list of Data1D objects if multiple entries were found,
707	or None of nothing was found
708	: raise RuntimeError: when the file can't be opened
709	: raise ValueError: when the length of the data vectors are inconsistent
710	"""
711	output = []
712	if os.path.isfile(path):
713	basename = os.path.basename(path)
714	root, extension = os.path.splitext(basename)
715
716	if extension.lower() in self.ext or \
717	extension.lower() == '.xml':
718	tree = etree.parse(path, parser=etree.ETCompatXMLParser())
719
720	# Check the format version number
721	# Specifying the namespace will take care of
722	# the file format version
723	root = tree.getroot()
724
725	entry_list = root.xpath('/ns:SASroot/ns:SASentry',
726	namespaces={'ns': CANSAS_NS})
727
728	for entry in entry_list:
729	invstate = self._parse_state(entry)
730	# invstate could be None when .svs file is loaded
731	# in this case, skip appending to output
732	if invstate is not None:
733	sas_entry, _ = self._parse_entry(entry)
734	sas_entry.meta_data['invstate'] = invstate
735	sas_entry.filename = invstate.file
736	output.append(sas_entry)
737	else:
738	raise RuntimeError, "%s is not a file" % path
739
740	# Return output consistent with the loader's api
741	if len(output) == 0:
742	return None
743	elif len(output) == 1:
744	# Call back to post the new state
745	self.state = output[0].meta_data['invstate']
746	self.call_back(state=output[0].meta_data['invstate'],
747	datainfo=output[0])
748	return output[0]
749	else:
750	return output
751
752	def get_state(self):
753	return self.state
754
755	def write(self, filename, datainfo=None, invstate=None):
756	"""
757	Write the content of a Data1D as a CanSAS XML file
758
759	: param filename: name of the file to write
760	: param datainfo: Data1D object
761	: param invstate: InvariantState object
762	"""
763	# Sanity check
764	if self.cansas:
765	doc = self.write_toXML(datainfo, invstate)
766	# Write the XML document
767	fd = open(filename, 'w')
768	fd.write(doc.toprettyxml())
769	fd.close()
770	else:
771	invstate.toXML(file=filename)
772
773	def write_toXML(self, datainfo=None, state=None):
774	"""
775	Write toXML, a helper for write()
776
777	: return: xml doc
778	"""
779	if datainfo is None:
780	datainfo = sas.sascalc.dataloader.data_info.Data1D(x=[], y=[])
781	elif not issubclass(datainfo.__class__, sas.sascalc.dataloader.data_info.Data1D):
782	msg = "The cansas writer expects a Data1D"
783	msg += " instance: %s" % str(datainfo.__class__.__name__)
784	raise RuntimeError, msg
785	# make sure title and data run is filled up.
786	if datainfo.title is None or datainfo.title == '':
787	datainfo.title = datainfo.name
788	if datainfo.run_name is None or datainfo.run_name == {}:
789	datainfo.run = [str(datainfo.name)]
790	datainfo.run_name[0] = datainfo.name
791	# Create basic XML document
792	doc, sasentry = self._to_xml_doc(datainfo)
793	# Add the invariant information to the XML document
794	if state is not None:
795	doc = state.toXML(datainfo.name, doc=doc, entry_node=sasentry)
796	return doc

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SasView

source: sasview/src/sas/sasgui/perspectives/invariant/invariant_state.py @ 23ff8d5

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