dataFitting.py @ 6435594

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.2.2ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload

Last change on this file since 6435594 was 9a5097c, checked in by andyfaff, 8 years ago
MAINT: import numpy as np
Property mode set to `100644`
File size: 19.0 KB

Rev	Line
[12aa9b5]	1	"""
[d955bf19]	2	Adapters for fitting module
[12aa9b5]	3	"""
[8e87ece]	4	import copy
[9a5097c]	5	import numpy as np
[901142f]	6	import math
[b699768]	7	from sas.sascalc.data_util.uncertainty import Uncertainty
[d7bb526]	8	from sas.sasgui.plottools.plottables import Data1D as PlotData1D
	9	from sas.sasgui.plottools.plottables import Data2D as PlotData2D
	10	from sas.sasgui.plottools.plottables import Theory1D as PlotTheory1D
[81812d9]	11
[b699768]	12	from sas.sascalc.dataloader.data_info import Data1D as LoadData1D
	13	from sas.sascalc.dataloader.data_info import Data2D as LoadData2D
[81812d9]	14
[f444b20]	15
[3562fbc]	16	class Data1D(PlotData1D, LoadData1D):
[d955bf19]	17	"""
	18	"""
[a9f579c]	19
	20	def __init__(self, x=None, y=None, dx=None, dy=None, lam=None, dlam=None, isSesans=False):
[d955bf19]	21	"""
	22	"""
[32c0841]	23	if x is None:
	24	x = []
	25	if y is None:
	26	y = []
[a9f579c]	27	self.isSesans = isSesans
	28	PlotData1D.__init__(self, x, y, dx, dy, lam, dlam)
	29	LoadData1D.__init__(self, x, y, dx, dy, lam, dlam, isSesans)
	30
[901142f]	31	self.id = None
[e88ebfd]	32	self.list_group_id = []
	33	self.group_id = None
[ff3f900b]	34	self.is_data = True
[f444b20]	35	self.path = None
[8a7d922]	36	self.xtransform = None
[68adf86]	37	if self.isSesans:
	38	self.xtransform = "x"
[8a7d922]	39	self.ytransform = None
[68adf86]	40	if self.isSesans:
	41	self.ytransform = "y"
[f444b20]	42	self.title = ""
[5c4b674]	43	self.scale = None
	44
[ff3f900b]	45	def copy_from_datainfo(self, data1d):
	46	"""
[d955bf19]	47	copy values of Data1D of type DataLaoder.Data_info
[ff3f900b]	48	"""
	49	self.x = copy.deepcopy(data1d.x)
	50	self.y = copy.deepcopy(data1d.y)
	51	self.dy = copy.deepcopy(data1d.dy)
[8e87ece]	52
	53	if hasattr(data1d, "dx"):
	54	self.dx = copy.deepcopy(data1d.dx)
	55	if hasattr(data1d, "dxl"):
	56	self.dxl = copy.deepcopy(data1d.dxl)
	57	if hasattr(data1d, "dxw"):
	58	self.dxw = copy.deepcopy(data1d.dxw)
[ff3f900b]	59
[901142f]	60	self.xaxis(data1d._xaxis, data1d._xunit)
	61	self.yaxis(data1d._yaxis, data1d._yunit)
[f444b20]	62	self.title = data1d.title
[3562fbc]	63
	64	def __str__(self):
	65	"""
[d955bf19]	66	print data
[3562fbc]	67	"""
	68	_str = "%s\n" % LoadData1D.__str__(self)
	69
	70	return _str
[901142f]	71
	72	def _perform_operation(self, other, operation):
	73	"""
	74	"""
	75	# First, check the data compatibility
	76	dy, dy_other = self._validity_check(other)
[a9f579c]	77	result = Data1D(x=[], y=[], lam=[], dx=None, dy=None, dlam=None)
[a48842a2]	78	result.clone_without_data(length=len(self.x), clone=self)
[901142f]	79	result.copy_from_datainfo(data1d=self)
[a48842a2]	80	if self.dxw == None:
	81	result.dxw = None
	82	else:
[9a5097c]	83	result.dxw = np.zeros(len(self.x))
[a48842a2]	84	if self.dxl == None:
	85	result.dxl = None
	86	else:
[9a5097c]	87	result.dxl = np.zeros(len(self.x))
[a48842a2]	88
[901142f]	89	for i in range(len(self.x)):
	90	result.x[i] = self.x[i]
	91	if self.dx is not None and len(self.x) == len(self.dx):
	92	result.dx[i] = self.dx[i]
[a48842a2]	93	if self.dxw is not None and len(self.x) == len(self.dxw):
	94	result.dxw[i] = self.dxw[i]
	95	if self.dxl is not None and len(self.x) == len(self.dxl):
	96	result.dxl[i] = self.dxl[i]
[901142f]	97
	98	a = Uncertainty(self.y[i], dy[i]**2)
	99	if isinstance(other, Data1D):
	100	b = Uncertainty(other.y[i], dy_other[i]**2)
[a48842a2]	101	if other.dx is not None:
	102	result.dx[i] *= self.dx[i]
	103	result.dx[i] += (other.dx[i]**2)
	104	result.dx[i] /= 2
	105	result.dx[i] = math.sqrt(result.dx[i])
	106	if result.dxl is not None and other.dxl is not None:
	107	result.dxl[i] *= self.dxl[i]
	108	result.dxl[i] += (other.dxl[i]**2)
	109	result.dxl[i] /= 2
	110	result.dxl[i] = math.sqrt(result.dxl[i])
[901142f]	111	else:
	112	b = other
	113
	114	output = operation(a, b)
	115	result.y[i] = output.x
	116	result.dy[i] = math.sqrt(math.fabs(output.variance))
	117	return result
	118
[a48842a2]	119	def _perform_union(self, other):
	120	"""
	121	"""
	122	# First, check the data compatibility
	123	self._validity_check_union(other)
[a9f579c]	124	result = Data1D(x=[], y=[], lam=[], dx=None, dy=None, dlam=None)
[a48842a2]	125	tot_length = len(self.x) + len(other.x)
	126	result = self.clone_without_data(length=tot_length, clone=result)
[a9f579c]	127	if self.dlam == None or other.dlam is None:
	128	result.dlam = None
	129	else:
[9a5097c]	130	result.dlam = np.zeros(tot_length)
[a48842a2]	131	if self.dy == None or other.dy is None:
	132	result.dy = None
	133	else:
[9a5097c]	134	result.dy = np.zeros(tot_length)
[a48842a2]	135	if self.dx == None or other.dx is None:
	136	result.dx = None
	137	else:
[9a5097c]	138	result.dx = np.zeros(tot_length)
[a48842a2]	139	if self.dxw == None or other.dxw is None:
	140	result.dxw = None
	141	else:
[9a5097c]	142	result.dxw = np.zeros(tot_length)
[a48842a2]	143	if self.dxl == None or other.dxl is None:
	144	result.dxl = None
	145	else:
[9a5097c]	146	result.dxl = np.zeros(tot_length)
[a48842a2]	147
[9a5097c]	148	result.x = np.append(self.x, other.x)
[a48842a2]	149	#argsorting
[9a5097c]	150	ind = np.argsort(result.x)
[a48842a2]	151	result.x = result.x[ind]
[9a5097c]	152	result.y = np.append(self.y, other.y)
[a48842a2]	153	result.y = result.y[ind]
[9a5097c]	154	result.lam = np.append(self.lam, other.lam)
[a9f579c]	155	result.lam = result.lam[ind]
	156	if result.dlam != None:
[9a5097c]	157	result.dlam = np.append(self.dlam, other.dlam)
[a9f579c]	158	result.dlam = result.dlam[ind]
[a48842a2]	159	if result.dy != None:
[9a5097c]	160	result.dy = np.append(self.dy, other.dy)
[a48842a2]	161	result.dy = result.dy[ind]
	162	if result.dx is not None:
[9a5097c]	163	result.dx = np.append(self.dx, other.dx)
[a48842a2]	164	result.dx = result.dx[ind]
	165	if result.dxw is not None:
[9a5097c]	166	result.dxw = np.append(self.dxw, other.dxw)
[a48842a2]	167	result.dxw = result.dxw[ind]
	168	if result.dxl is not None:
[9a5097c]	169	result.dxl = np.append(self.dxl, other.dxl)
[a48842a2]	170	result.dxl = result.dxl[ind]
	171	return result
	172
[f444b20]	173
	174
[32c0841]	175	class Theory1D(PlotTheory1D, LoadData1D):
[d955bf19]	176	"""
	177	"""
[32c0841]	178	def __init__(self, x=None, y=None, dy=None):
[d955bf19]	179	"""
	180	"""
[32c0841]	181	if x is None:
	182	x = []
	183	if y is None:
	184	y = []
[e5664f2]	185	PlotTheory1D.__init__(self, x, y, dy)
	186	LoadData1D.__init__(self, x, y, dy)
[901142f]	187	self.id = None
[e88ebfd]	188	self.list_group_id = []
	189	self.group_id = None
[e5664f2]	190	self.is_data = True
[f444b20]	191	self.path = None
[8a7d922]	192	self.xtransform = None
	193	self.ytransform = None
[f444b20]	194	self.title = ""
[5c4b674]	195	self.scale = None
[e5664f2]	196
	197	def copy_from_datainfo(self, data1d):
	198	"""
[d955bf19]	199	copy values of Data1D of type DataLaoder.Data_info
[e5664f2]	200	"""
	201	self.x = copy.deepcopy(data1d.x)
	202	self.y = copy.deepcopy(data1d.y)
	203	self.dy = copy.deepcopy(data1d.dy)
[8e87ece]	204	if hasattr(data1d, "dx"):
	205	self.dx = copy.deepcopy(data1d.dx)
	206	if hasattr(data1d, "dxl"):
	207	self.dxl = copy.deepcopy(data1d.dxl)
	208	if hasattr(data1d, "dxw"):
	209	self.dxw = copy.deepcopy(data1d.dxw)
[901142f]	210	self.xaxis(data1d._xaxis, data1d._xunit)
	211	self.yaxis(data1d._yaxis, data1d._yunit)
[f444b20]	212	self.title = data1d.title
[8e87ece]	213
[3562fbc]	214	def __str__(self):
	215	"""
[d955bf19]	216	print data
[3562fbc]	217	"""
	218	_str = "%s\n" % LoadData1D.__str__(self)
	219
	220	return _str
[901142f]	221
	222	def _perform_operation(self, other, operation):
	223	"""
	224	"""
	225	# First, check the data compatibility
	226	dy, dy_other = self._validity_check(other)
[a48842a2]	227	result = self.clone_without_data(len(self.x))
[901142f]	228	result.copy_from_datainfo(data1d=self)
[a48842a2]	229	if self.dxw == None:
	230	result.dxw = None
	231	else:
[9a5097c]	232	result.dxw = np.zeros(len(self.x))
[a48842a2]	233	if self.dxl == None:
	234	result.dxl = None
	235	else:
[9a5097c]	236	result.dxl = np.zeros(len(self.x))
[a48842a2]	237
[9a5097c]	238	for i in range(np.size(self.x)):
[901142f]	239	result.x[i] = self.x[i]
[a48842a2]	240	if self.dx is not None and len(self.x) == len(self.dx):
	241	result.dx[i] = self.dx[i]
	242	if self.dxw is not None and len(self.x) == len(self.dxw):
	243	result.dxw[i] = self.dxw[i]
	244	if self.dxl is not None and len(self.x) == len(self.dxl):
	245	result.dxl[i] = self.dxl[i]
	246
[901142f]	247	a = Uncertainty(self.y[i], dy[i]**2)
	248	if isinstance(other, Data1D):
	249	b = Uncertainty(other.y[i], dy_other[i]**2)
[a48842a2]	250	if other.dx is not None:
	251	result.dx[i] *= self.dx[i]
	252	result.dx[i] += (other.dx[i]**2)
	253	result.dx[i] /= 2
	254	result.dx[i] = math.sqrt(result.dx[i])
	255	if result.dxl is not None and other.dxl is not None:
	256	result.dxl[i] *= self.dxl[i]
	257	other.dxl[i] += (other.dxl[i]**2)
	258	result.dxl[i] /= 2
	259	result.dxl[i] = math.sqrt(result.dxl[i])
	260	if result.dxw is not None and self.dxw is not None:
	261	result.dxw[i] *= self.dxw[i]
	262	other.dxw[i] += (other.dxw[i]**2)
	263	result.dxw[i] /= 2
	264	result.dxw[i] = math.sqrt(result.dxw[i])
[901142f]	265	else:
	266	b = other
[a48842a2]	267
[901142f]	268	output = operation(a, b)
	269	result.y[i] = output.x
	270	result.dy[i] = math.sqrt(math.fabs(output.variance))
	271	return result
	272
[a48842a2]	273	def _perform_union(self, other):
	274	"""
	275	"""
	276	# First, check the data compatibility
	277	self._validity_check_union(other)
[a9f579c]	278	result = Data1D(x=[], y=[], lam=[], dx=None, dy=None, dlam=[])
[a48842a2]	279	tot_length = len(self.x)+len(other.x)
	280	result.clone_without_data(length=tot_length, clone=self)
[a9f579c]	281	if self.dlam == None or other.dlam is None:
	282	result.dlam = None
	283	else:
[9a5097c]	284	result.dlam = np.zeros(tot_length)
[a48842a2]	285	if self.dy == None or other.dy is None:
	286	result.dy = None
	287	else:
[9a5097c]	288	result.dy = np.zeros(tot_length)
[a48842a2]	289	if self.dx == None or other.dx is None:
	290	result.dx = None
	291	else:
[9a5097c]	292	result.dx = np.zeros(tot_length)
[a48842a2]	293	if self.dxw == None or other.dxw is None:
	294	result.dxw = None
	295	else:
[9a5097c]	296	result.dxw = np.zeros(tot_length)
[a48842a2]	297	if self.dxl == None or other.dxl is None:
	298	result.dxl = None
	299	else:
[9a5097c]	300	result.dxl = np.zeros(tot_length)
	301	result.x = np.append(self.x, other.x)
[a48842a2]	302	#argsorting
[9a5097c]	303	ind = np.argsort(result.x)
[a48842a2]	304	result.x = result.x[ind]
[9a5097c]	305	result.y = np.append(self.y, other.y)
[a48842a2]	306	result.y = result.y[ind]
[9a5097c]	307	result.lam = np.append(self.lam, other.lam)
[a9f579c]	308	result.lam = result.lam[ind]
[a48842a2]	309	if result.dy != None:
[9a5097c]	310	result.dy = np.append(self.dy, other.dy)
[a48842a2]	311	result.dy = result.dy[ind]
	312	if result.dx is not None:
[9a5097c]	313	result.dx = np.append(self.dx, other.dx)
[a48842a2]	314	result.dx = result.dx[ind]
	315	if result.dxw is not None:
[9a5097c]	316	result.dxw = np.append(self.dxw, other.dxw)
[a48842a2]	317	result.dxw = result.dxw[ind]
	318	if result.dxl is not None:
[9a5097c]	319	result.dxl = np.append(self.dxl, other.dxl)
[a48842a2]	320	result.dxl = result.dxl[ind]
	321	return result
	322
[ff3f900b]	323
[32c0841]	324	class Data2D(PlotData2D, LoadData2D):
[d955bf19]	325	"""
	326	"""
[901142f]	327	def __init__(self, image=None, err_image=None,
[0008f54]	328	qx_data=None, qy_data=None, q_data=None,
	329	mask=None, dqx_data=None, dqy_data=None,
[901142f]	330	xmin=None, xmax=None, ymin=None, ymax=None,
[0008f54]	331	zmin=None, zmax=None):
[d955bf19]	332	"""
	333	"""
[901142f]	334	PlotData2D.__init__(self, image=image, err_image=err_image,
	335	xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax,
	336	zmin=zmin, zmax=zmax, qx_data=qx_data,
	337	qy_data=qy_data)
[ff3f900b]	338
[901142f]	339	LoadData2D.__init__(self, data=image, err_data=err_image,
	340	qx_data=qx_data, qy_data=qy_data,
	341	dqx_data=dqx_data, dqy_data=dqy_data,
	342	q_data=q_data, mask=mask)
[f444b20]	343	self.id = None
[e88ebfd]	344	self.list_group_id = []
	345	self.group_id = None
[5c4b674]	346	self.is_data = True
[f444b20]	347	self.path = None
[5c4b674]	348	self.xtransform = None
	349	self.ytransform = None
[f444b20]	350	self.title = ""
[8a7d922]	351	self.scale = None
[ff3f900b]	352
	353	def copy_from_datainfo(self, data2d):
	354	"""
[d955bf19]	355	copy value of Data2D of type DataLoader.data_info
[ff3f900b]	356	"""
[32c0841]	357	self.data = copy.deepcopy(data2d.data)
	358	self.qx_data = copy.deepcopy(data2d.qx_data)
	359	self.qy_data = copy.deepcopy(data2d.qy_data)
	360	self.q_data = copy.deepcopy(data2d.q_data)
	361	self.mask = copy.deepcopy(data2d.mask)
	362	self.err_data = copy.deepcopy(data2d.err_data)
	363	self.x_bins = copy.deepcopy(data2d.x_bins)
	364	self.y_bins = copy.deepcopy(data2d.y_bins)
	365	if data2d.dqx_data is not None:
	366	self.dqx_data = copy.deepcopy(data2d.dqx_data)
	367	if data2d.dqy_data is not None:
	368	self.dqy_data = copy.deepcopy(data2d.dqy_data)
	369	self.xmin = data2d.xmin
	370	self.xmax = data2d.xmax
	371	self.ymin = data2d.ymin
	372	self.ymax = data2d.ymax
[f7a5c7e]	373	if hasattr(data2d, "zmin"):
[32c0841]	374	self.zmin = data2d.zmin
[f7a5c7e]	375	if hasattr(data2d, "zmax"):
[32c0841]	376	self.zmax = data2d.zmax
[901142f]	377	self.xaxis(data2d._xaxis, data2d._xunit)
	378	self.yaxis(data2d._yaxis, data2d._yunit)
[f444b20]	379	self.title = data2d.title
[ff3f900b]	380
[3562fbc]	381	def __str__(self):
	382	"""
[d955bf19]	383	print data
[3562fbc]	384	"""
	385	_str = "%s\n" % LoadData2D.__str__(self)
	386	return _str
[fdef956]	387
[901142f]	388	def _perform_operation(self, other, operation):
	389	"""
[d955bf19]	390	Perform 2D operations between data sets
	391
	392	:param other: other data set
	393	:param operation: function defining the operation
	394
[901142f]	395	"""
	396	# First, check the data compatibility
	397	dy, dy_other = self._validity_check(other)
	398	result = Data2D(image=None, qx_data=None, qy_data=None,
[a48842a2]	399	q_data=None, err_image=None, xmin=None, xmax=None,
[901142f]	400	ymin=None, ymax=None, zmin=None, zmax=None)
[9053779]	401	result.clone_without_data(len(self.data))
[901142f]	402	result.copy_from_datainfo(data2d=self)
[a48842a2]	403	result.xmin = self.xmin
	404	result.xmax = self.xmax
	405	result.ymin = self.ymin
	406	result.ymax = self.ymax
	407	if self.dqx_data == None or self.dqy_data == None:
	408	result.dqx_data = None
	409	result.dqy_data = None
	410	else:
[9a5097c]	411	result.dqx_data = np.zeros(len(self.data))
	412	result.dqy_data = np.zeros(len(self.data))
	413	for i in range(np.size(self.data)):
[dcf73a4]	414	result.data[i] = self.data[i]
	415	if self.err_data is not None and \
[9a5097c]	416	np.size(self.data) == np.size(self.err_data):
[dcf73a4]	417	result.err_data[i] = self.err_data[i]
	418	if self.dqx_data is not None:
	419	result.dqx_data[i] = self.dqx_data[i]
	420	if self.dqy_data is not None:
	421	result.dqy_data[i] = self.dqy_data[i]
	422	result.qx_data[i] = self.qx_data[i]
	423	result.qy_data[i] = self.qy_data[i]
	424	result.q_data[i] = self.q_data[i]
	425	result.mask[i] = self.mask[i]
	426
[a48842a2]	427	a = Uncertainty(self.data[i], dy[i]**2)
	428	if isinstance(other, Data2D):
	429	b = Uncertainty(other.data[i], dy_other[i]**2)
	430	if other.dqx_data is not None and \
	431	result.dqx_data is not None:
	432	result.dqx_data[i] *= self.dqx_data[i]
	433	result.dqx_data[i] += (other.dqx_data[i]**2)
	434	result.dqx_data[i] /= 2
	435	result.dqx_data[i] = math.sqrt(result.dqx_data[i])
	436	if other.dqy_data is not None and \
	437	result.dqy_data is not None:
	438	result.dqy_data[i] *= self.dqy_data[i]
	439	result.dqy_data[i] += (other.dqy_data[i]**2)
	440	result.dqy_data[i] /= 2
	441	result.dqy_data[i] = math.sqrt(result.dqy_data[i])
	442	else:
	443	b = other
	444
	445	output = operation(a, b)
	446	result.data[i] = output.x
	447	result.err_data[i] = math.sqrt(math.fabs(output.variance))
	448	return result
	449
	450	def _perform_union(self, other):
	451	"""
	452	Perform 2D operations between data sets
[901142f]	453
[a48842a2]	454	:param other: other data set
	455	:param operation: function defining the operation
	456
	457	"""
	458	# First, check the data compatibility
	459	self._validity_check_union(other)
	460	result = Data2D(image=None, qx_data=None, qy_data=None,
	461	q_data=None, err_image=None, xmin=None, xmax=None,
	462	ymin=None, ymax=None, zmin=None, zmax=None)
	463	length = len(self.data)
	464	tot_length = length + len(other.data)
[9053779]	465	result.clone_without_data(tot_length)
[a48842a2]	466	result.xmin = self.xmin
	467	result.xmax = self.xmax
	468	result.ymin = self.ymin
	469	result.ymax = self.ymax
	470	if self.dqx_data == None or self.dqy_data == None or \
	471	other.dqx_data == None or other.dqy_data == None :
	472	result.dqx_data = None
	473	result.dqy_data = None
	474	else:
[9a5097c]	475	result.dqx_data = np.zeros(len(self.data) + \
	476	np.size(other.data))
	477	result.dqy_data = np.zeros(len(self.data) + \
	478	np.size(other.data))
[a48842a2]	479
[9a5097c]	480	result.data = np.append(self.data, other.data)
	481	result.qx_data = np.append(self.qx_data, other.qx_data)
	482	result.qy_data = np.append(self.qy_data, other.qy_data)
	483	result.q_data = np.append(self.q_data, other.q_data)
	484	result.mask = np.append(self.mask, other.mask)
[a48842a2]	485	if result.err_data is not None:
[9a5097c]	486	result.err_data = np.append(self.err_data, other.err_data)
[a48842a2]	487	if self.dqx_data is not None:
[9a5097c]	488	result.dqx_data = np.append(self.dqx_data, other.dqx_data)
[a48842a2]	489	if self.dqy_data is not None:
[9a5097c]	490	result.dqy_data = np.append(self.dqy_data, other.dqy_data)
[a48842a2]	491
[901142f]	492	return result
[1913820]	493
	494	def check_data_validity(data):
[b21d32b]	495	"""
	496	Return True is data is valid enough to compute chisqr, else False
	497	"""
	498	flag = True
	499	if data is not None:
	500	if issubclass(data.__class__, Data2D):
	501	if (data.data is None) or (len(data.data) == 0)\
	502	or (len(data.err_data) == 0):
	503	flag = False
	504	else:
	505	if (data.y is None) or (len(data.y) == 0):
	506	flag = False
	507	if not data.is_data:
	508	flag = False
	509	else:
	510	flag = False
	511	return flag

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SasView

source: sasview/src/sas/sasgui/guiframe/dataFitting.py @ 6435594

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