source: sasview/src/sans/perspectives/fitting/models.py @ 143c801

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Last change on this file since 143c801 was 2cdcbb5, checked in by Miguel Gonzalez <onzalezm@…>, 10 years ago

Removed MySphereModel? (only for testing) from models.py
  • Property mode set to 100644
File size: 45.2 KB
Line 
1"""
2    Utilities to manage models
3"""
4import wx
5import imp
6import os
7import sys
8import math
9import os.path
10# Time is needed by the log method
11import time
12import logging
13import py_compile
14import shutil
15from sans.guiframe.events import StatusEvent
16# Explicitly import from the pluginmodel module so that py2exe
17# places it in the distribution. The Model1DPlugin class is used
18# as the base class of plug-in models.
19from sans.models.pluginmodel import Model1DPlugin
20from sans.models.BaseComponent import BaseComponent
21from sans.guiframe.CategoryInstaller import CategoryInstaller
22   
23PLUGIN_DIR = 'plugin_models'
24
25def get_model_python_path():
26    return os.path.dirname(__file__)
27
28
29def log(message):
30    """
31        Log a message in a file located in the user's home directory
32    """
33    dir = os.path.join(os.path.expanduser("~"), '.sasview', PLUGIN_DIR)
34    out = open(os.path.join(dir, "plugins.log"), 'a')
35    out.write("%10g:  %s\n" % (time.clock(), message))
36    out.close()
37
38
39def _check_plugin(model, name):
40    """
41    Do some checking before model adding plugins in the list
42   
43    :param model: class model to add into the plugin list
44    :param name:name of the module plugin
45   
46    :return model: model if valid model or None if not valid
47   
48    """
49    #Check if the plugin is of type Model1DPlugin
50    if not issubclass(model, Model1DPlugin):
51        msg = "Plugin %s must be of type Model1DPlugin \n" % str(name)
52        log(msg)
53        return None
54    if model.__name__ != "Model":
55        msg = "Plugin %s class name must be Model \n" % str(name)
56        log(msg)
57        return None
58    try:
59        new_instance = model()
60    except:
61        msg = "Plugin %s error in __init__ \n\t: %s %s\n" % (str(name),
62                                    str(sys.exc_type), sys.exc_value)
63        log(msg)
64        return None
65   
66    if hasattr(new_instance, "function"):
67        try:
68            value = new_instance.function()
69        except:
70            msg = "Plugin %s: error writing function \n\t :%s %s\n " % (str(name),
71                                    str(sys.exc_type), sys.exc_value)
72            log(msg)
73            return None
74    else:
75        msg = "Plugin  %s needs a method called function \n" % str(name)
76        log(msg)
77        return None
78    return model
79 
80 
81def find_plugins_dir():
82    """
83        Find path of the plugins directory.
84        The plugin directory is located in the user's home directory.
85    """
86    dir = os.path.join(os.path.expanduser("~"), '.sasview', PLUGIN_DIR)
87   
88    # If the plugin directory doesn't exist, create it
89    if not os.path.isdir(dir):
90        os.makedirs(dir)
91       
92    # Find paths needed
93    try:
94        # For source
95        if os.path.isdir(os.path.dirname(__file__)):
96            p_dir = os.path.join(os.path.dirname(__file__), PLUGIN_DIR)
97        else:
98            raise
99    except:
100        # Check for data path next to exe/zip file.
101        #Look for maximum n_dir up of the current dir to find plugins dir
102        n_dir = 12
103        p_dir = None
104        f_dir = os.path.join(os.path.dirname(__file__))
105        for i in range(n_dir):
106            if i > 1:
107                f_dir, _ = os.path.split(f_dir)
108            plugin_path = os.path.join(f_dir, PLUGIN_DIR)
109            if os.path.isdir(plugin_path):
110                p_dir = plugin_path
111                break
112        if not p_dir:
113            raise
114    # Place example user models as needed
115    if os.path.isdir(p_dir):
116        for file in os.listdir(p_dir):
117            file_path = os.path.join(p_dir, file)
118            if os.path.isfile(file_path):
119                if file.split(".")[-1] == 'py' and\
120                    file.split(".")[0] != '__init__':
121                    if not os.path.isfile(os.path.join(dir, file)):
122                        shutil.copy(file_path, dir)
123
124    return dir
125
126
127class ReportProblem:
128    def __nonzero__(self):
129        type, value, traceback = sys.exc_info()
130        if type is not None and issubclass(type, py_compile.PyCompileError):
131            print "Problem with", repr(value)
132            raise type, value, traceback
133        return 1
134   
135report_problem = ReportProblem()
136
137
138def compile_file(dir):
139    """
140    Compile a py file
141    """
142    try:
143        import compileall
144        compileall.compile_dir(dir=dir, ddir=dir, force=1,
145                               quiet=report_problem)
146    except:
147        type, value, traceback = sys.exc_info()
148        return value
149    return None
150
151
152def _findModels(dir):
153    """
154    """
155    # List of plugin objects
156    plugins = {}
157    # Go through files in plug-in directory
158    #always recompile the folder plugin
159    dir = find_plugins_dir()
160    if not os.path.isdir(dir):
161        msg = "SansView couldn't locate Model plugin folder."
162        msg += """ "%s" does not exist""" % dir
163        logging.warning(msg)
164        return plugins
165    else:
166        log("looking for models in: %s" % str(dir))
167        compile_file(dir)
168        logging.info("pluging model dir: %s\n" % str(dir))
169    try:
170        list = os.listdir(dir)
171        for item in list:
172            toks = os.path.splitext(os.path.basename(item))
173            if toks[1] == '.py' and not toks[0] == '__init__':
174                name = toks[0]
175           
176                path = [os.path.abspath(dir)]
177                file = None
178                try:
179                    (file, path, info) = imp.find_module(name, path)
180                    module = imp.load_module(name, file, item, info)
181                    if hasattr(module, "Model"):
182                        try:
183                            if _check_plugin(module.Model, name) != None:
184                                plugins[name] = module.Model
185                        except:
186                            msg = "Error accessing Model"
187                            msg += "in %s\n  %s %s\n" % (name,
188                                    str(sys.exc_type), sys.exc_value)
189                            log(msg)
190                except:
191                    msg = "Error accessing Model"
192                    msg += " in %s\n  %s %s \n" % (name,
193                                    str(sys.exc_type), sys.exc_value)
194                    log(msg)
195                finally:
196             
197                    if not file == None:
198                        file.close()
199    except:
200        # Don't deal with bad plug-in imports. Just skip.
201        msg = "Could not import model plugin: %s\n" % sys.exc_value
202        log(msg)
203        pass
204    return plugins
205
206
207class ModelList(object):
208    """
209    Contains dictionary of model and their type
210    """
211    def __init__(self):
212        """
213        """
214        self.mydict = {}
215       
216    def set_list(self, name, mylist):
217        """
218        :param name: the type of the list
219        :param mylist: the list to add
220       
221        """
222        if name not in self.mydict.keys():
223            self.reset_list(name, mylist)
224           
225    def reset_list(self, name, mylist):
226        """
227        :param name: the type of the list
228        :param mylist: the list to add
229        """
230        self.mydict[name] = mylist
231           
232    def get_list(self):
233        """
234        return all the list stored in a dictionary object
235        """
236        return self.mydict
237       
238       
239class ModelManagerBase:
240    """
241        Base class for the model manager
242    """
243    ## external dict for models
244    model_combobox = ModelList()
245    ## Dictionary of form factor models
246    form_factor_dict = {}
247    ## dictionary of structure factor models
248    struct_factor_dict = {}
249    ##list of shape models -- this is superseded by categories
250#    shape_list = []
251    ## shape independent model list-- this is superseded by categories
252#    shape_indep_list = []
253    ##list of structure factors
254    struct_list = []
255    ##list of model allowing multiplication by a structure factor
256    multiplication_factor = []
257    ##list of multifunctional shapes (i.e. that have user defined number of levels
258    multi_func_list = []
259    ## list of added models -- currently python models found in the plugin dir.
260    plugins = []
261    ## Event owner (guiframe)
262    event_owner = None
263    last_time_dir_modified = 0
264   
265    def __init__(self):
266        """
267        """
268        self.model_dictionary = {}
269        self.stored_plugins = {}
270        self._getModelList()
271       
272    def findModels(self):
273        """
274        find  plugin model in directory of plugin .recompile all file
275        in the directory if file were modified
276        """
277        temp = {}
278        if self.is_changed():
279            return  _findModels(dir)
280        logging.info("pluging model : %s\n" % str(temp))
281        return temp
282       
283    def _getModelList(self):
284        """
285        List of models we want to make available by default
286        for this application
287   
288        :return: the next free event ID following the new menu events
289       
290        """
291
292        ## NOTE: as of April 26, 2014, as part of first pass on fixing categories,
293        ## all the appends to shape_list or shape_independent_list are
294        ## commented out.  They should be possible to remove.  They are in
295        ## fact a "category" of model whereas the other list are actually
296        ## "attributes" of a model.  In other words is it a structure factor
297        ## that can be used against a form factor, is it a form factor that is
298        ## knows how to be multiplied by a structure factor, does it have user
299        ## defined number of parameters, etc.
300        ##
301        ## We hope this whole list will be superseded by the new C models
302        ## structure where each model will provide a method to interrogate it
303        ## about its "attributes" -- then this long list becomes a loop reading
304        ## each model in the category list to populate the "attribute"lists. 
305        ## We should also refactor the whole category vs attribute list
306        ## structure when doing this as now the attribute lists think they are
307        ## also category lists.
308        ##
309        ##   -PDB  April 26, 2014
310
311        # regular model names only
312        self.model_name_list = []
313        from sans.models.SphereModel import SphereModel
314        self.model_dictionary[SphereModel.__name__] = SphereModel
315#        self.shape_list.append(SphereModel)
316        self.multiplication_factor.append(SphereModel)
317        self.model_name_list.append(SphereModel.__name__)
318       
319        from sans.models.BinaryHSModel import BinaryHSModel
320        self.model_dictionary[BinaryHSModel.__name__] = BinaryHSModel
321#        self.shape_list.append(BinaryHSModel)
322        self.model_name_list.append(BinaryHSModel.__name__)
323                       
324        from sans.models.FuzzySphereModel import FuzzySphereModel
325        self.model_dictionary[FuzzySphereModel.__name__] = FuzzySphereModel
326#        self.shape_list.append(FuzzySphereModel)
327        self.multiplication_factor.append(FuzzySphereModel)
328        self.model_name_list.append(FuzzySphereModel.__name__)
329                       
330        from sans.models.RaspBerryModel import RaspBerryModel
331        self.model_dictionary[RaspBerryModel.__name__] = RaspBerryModel
332#        self.shape_list.append(RaspBerryModel)
333        self.model_name_list.append(RaspBerryModel.__name__)
334               
335        from sans.models.CoreShellModel import CoreShellModel
336        self.model_dictionary[CoreShellModel.__name__] = CoreShellModel
337#        self.shape_list.append(CoreShellModel)
338        self.multiplication_factor.append(CoreShellModel)
339        self.model_name_list.append(CoreShellModel.__name__)
340       
341        from sans.models.Core2ndMomentModel import Core2ndMomentModel
342        self.model_dictionary[Core2ndMomentModel.__name__] = Core2ndMomentModel
343#        self.shape_list.append(Core2ndMomentModel)
344        self.model_name_list.append(Core2ndMomentModel.__name__)
345       
346        from sans.models.CoreMultiShellModel import CoreMultiShellModel
347        self.model_dictionary[CoreMultiShellModel.__name__] = CoreMultiShellModel
348#        self.shape_list.append(CoreMultiShellModel)
349        self.multiplication_factor.append(CoreMultiShellModel)
350        self.multi_func_list.append(CoreMultiShellModel)
351
352        from sans.models.VesicleModel import VesicleModel
353        self.model_dictionary[VesicleModel.__name__] = VesicleModel
354#        self.shape_list.append(VesicleModel)
355        self.multiplication_factor.append(VesicleModel)
356        self.model_name_list.append(VesicleModel.__name__)
357       
358        from sans.models.MultiShellModel import MultiShellModel
359        self.model_dictionary[MultiShellModel.__name__] = MultiShellModel
360#        self.shape_list.append(MultiShellModel)
361        self.multiplication_factor.append(MultiShellModel)
362        self.model_name_list.append(MultiShellModel.__name__)
363       
364        from sans.models.OnionExpShellModel import OnionExpShellModel
365        self.model_dictionary[OnionExpShellModel.__name__] = OnionExpShellModel
366#        self.shape_list.append(OnionExpShellModel)
367        self.multiplication_factor.append(OnionExpShellModel)
368        self.multi_func_list.append(OnionExpShellModel)
369                         
370        from sans.models.SphericalSLDModel import SphericalSLDModel
371        self.model_dictionary[SphericalSLDModel.__name__] = SphericalSLDModel
372#        self.shape_list.append(SphericalSLDModel)
373        self.multiplication_factor.append(SphericalSLDModel)
374        self.multi_func_list.append(SphericalSLDModel)
375
376       
377        from sans.models.LinearPearlsModel import LinearPearlsModel
378        self.model_dictionary[LinearPearlsModel.__name__] = LinearPearlsModel
379#        self.shape_list.append(LinearPearlsModel)
380        self.model_name_list.append(LinearPearlsModel.__name__)
381         
382        from sans.models.PearlNecklaceModel import PearlNecklaceModel
383        self.model_dictionary[PearlNecklaceModel.__name__] = PearlNecklaceModel
384#        self.shape_list.append(PearlNecklaceModel)
385        self.model_name_list.append(PearlNecklaceModel.__name__)
386        #self.multiplication_factor.append(PearlNecklaceModel)
387       
388        from sans.models.CylinderModel import CylinderModel
389        self.model_dictionary[CylinderModel.__name__] = CylinderModel
390#        self.shape_list.append(CylinderModel)
391        self.multiplication_factor.append(CylinderModel)
392        self.model_name_list.append(CylinderModel.__name__)
393       
394        from sans.models.CoreShellCylinderModel import CoreShellCylinderModel
395        self.model_dictionary[CoreShellCylinderModel.__name__] = CoreShellCylinderModel
396#        self.shape_list.append(CoreShellCylinderModel)
397        self.multiplication_factor.append(CoreShellCylinderModel)
398        self.model_name_list.append(CoreShellCylinderModel.__name__)
399       
400        from sans.models.CoreShellBicelleModel import CoreShellBicelleModel
401        self.model_dictionary[CoreShellBicelleModel.__name__] = CoreShellBicelleModel
402#        self.shape_list.append(CoreShellBicelleModel)
403        self.multiplication_factor.append(CoreShellBicelleModel)
404        self.model_name_list.append(CoreShellBicelleModel.__name__)
405               
406        from sans.models.HollowCylinderModel import HollowCylinderModel
407        self.model_dictionary[HollowCylinderModel.__name__] = HollowCylinderModel
408#        self.shape_list.append(HollowCylinderModel)
409        self.multiplication_factor.append(HollowCylinderModel)
410        self.model_name_list.append(HollowCylinderModel.__name__)
411             
412        from sans.models.FlexibleCylinderModel import FlexibleCylinderModel
413        self.model_dictionary[FlexibleCylinderModel.__name__] = FlexibleCylinderModel
414#        self.shape_list.append(FlexibleCylinderModel)
415        self.model_name_list.append(FlexibleCylinderModel.__name__)
416
417        from sans.models.FlexCylEllipXModel import FlexCylEllipXModel
418        self.model_dictionary[FlexCylEllipXModel.__name__] = FlexCylEllipXModel
419#        self.shape_list.append(FlexCylEllipXModel)
420        self.model_name_list.append(FlexCylEllipXModel.__name__)
421       
422        from sans.models.StackedDisksModel import StackedDisksModel
423        self.model_dictionary[StackedDisksModel.__name__] = StackedDisksModel
424#        self.shape_list.append(StackedDisksModel)
425        self.multiplication_factor.append(StackedDisksModel)
426        self.model_name_list.append(StackedDisksModel.__name__)
427       
428        from sans.models.ParallelepipedModel import ParallelepipedModel
429        self.model_dictionary[ParallelepipedModel.__name__] = ParallelepipedModel
430#        self.shape_list.append(ParallelepipedModel)
431        self.multiplication_factor.append(ParallelepipedModel)
432        self.model_name_list.append(ParallelepipedModel.__name__)
433       
434        from sans.models.CSParallelepipedModel import CSParallelepipedModel
435        self.model_dictionary[CSParallelepipedModel.__name__] = CSParallelepipedModel
436#        self.shape_list.append(CSParallelepipedModel)
437        self.multiplication_factor.append(CSParallelepipedModel)
438        self.model_name_list.append(CSParallelepipedModel.__name__)
439       
440        from sans.models.EllipticalCylinderModel import EllipticalCylinderModel
441        self.model_dictionary[EllipticalCylinderModel.__name__] = EllipticalCylinderModel
442#        self.shape_list.append(EllipticalCylinderModel)
443        self.multiplication_factor.append(EllipticalCylinderModel)
444        self.model_name_list.append(EllipticalCylinderModel.__name__)
445       
446        from sans.models.BarBellModel import BarBellModel
447        self.model_dictionary[BarBellModel.__name__] = BarBellModel
448#        self.shape_list.append(BarBellModel)
449        self.model_name_list.append(BarBellModel.__name__)
450        # not implemeted yet!
451        #self.multiplication_factor.append(BarBellModel)
452       
453        from sans.models.CappedCylinderModel import CappedCylinderModel
454        self.model_dictionary[CappedCylinderModel.__name__] = CappedCylinderModel
455 #       self.shape_list.append(CappedCylinderModel)
456        self.model_name_list.append(CappedCylinderModel.__name__)
457        # not implemeted yet!
458        #self.multiplication_factor.append(CappedCylinderModel)
459       
460        from sans.models.EllipsoidModel import EllipsoidModel
461        self.model_dictionary[EllipsoidModel.__name__] = EllipsoidModel
462#        self.shape_list.append(EllipsoidModel)
463        self.multiplication_factor.append(EllipsoidModel)
464        self.model_name_list.append(EllipsoidModel.__name__)
465     
466        from sans.models.CoreShellEllipsoidModel import CoreShellEllipsoidModel
467        self.model_dictionary[CoreShellEllipsoidModel.__name__] = CoreShellEllipsoidModel
468#        self.shape_list.append(CoreShellEllipsoidModel)
469        self.multiplication_factor.append(CoreShellEllipsoidModel)
470        self.model_name_list.append(CoreShellEllipsoidModel.__name__)
471
472        from sans.models.CoreShellEllipsoidXTModel import CoreShellEllipsoidXTModel
473        self.model_dictionary[CoreShellEllipsoidXTModel.__name__] = CoreShellEllipsoidXTModel
474#        self.shape_list.append(CoreShellEllipsoidXTModel)
475        self.multiplication_factor.append(CoreShellEllipsoidXTModel)
476        self.model_name_list.append(CoreShellEllipsoidXTModel.__name__)
477         
478        from sans.models.TriaxialEllipsoidModel import TriaxialEllipsoidModel
479        self.model_dictionary[TriaxialEllipsoidModel.__name__] = TriaxialEllipsoidModel
480#        self.shape_list.append(TriaxialEllipsoidModel)
481        self.multiplication_factor.append(TriaxialEllipsoidModel)
482        self.model_name_list.append(TriaxialEllipsoidModel.__name__)
483       
484        from sans.models.LamellarModel import LamellarModel
485        self.model_dictionary[LamellarModel.__name__] = LamellarModel
486#        self.shape_list.append(LamellarModel)
487        self.model_name_list.append(LamellarModel.__name__)
488       
489        from sans.models.LamellarFFHGModel import LamellarFFHGModel
490        self.model_dictionary[LamellarFFHGModel.__name__] = LamellarFFHGModel
491#        self.shape_list.append(LamellarFFHGModel)
492        self.model_name_list.append(LamellarFFHGModel.__name__)
493       
494        from sans.models.LamellarPSModel import LamellarPSModel
495        self.model_dictionary[LamellarPSModel.__name__] = LamellarPSModel
496#        self.shape_list.append(LamellarPSModel)
497        self.model_name_list.append(LamellarPSModel.__name__)
498     
499        from sans.models.LamellarPSHGModel import LamellarPSHGModel
500        self.model_dictionary[LamellarPSHGModel.__name__] = LamellarPSHGModel
501#        self.shape_list.append(LamellarPSHGModel)
502        self.model_name_list.append(LamellarPSHGModel.__name__)
503       
504        from sans.models.LamellarPCrystalModel import LamellarPCrystalModel
505        self.model_dictionary[LamellarPCrystalModel.__name__] = LamellarPCrystalModel
506#        self.shape_list.append(LamellarPCrystalModel)
507        self.model_name_list.append(LamellarPCrystalModel.__name__)
508       
509        from sans.models.SCCrystalModel import SCCrystalModel
510        self.model_dictionary[SCCrystalModel.__name__] = SCCrystalModel
511#        self.shape_list.append(SCCrystalModel)
512        self.model_name_list.append(SCCrystalModel.__name__)
513       
514        from sans.models.FCCrystalModel import FCCrystalModel
515        self.model_dictionary[FCCrystalModel.__name__] = FCCrystalModel
516#        self.shape_list.append(FCCrystalModel)
517        self.model_name_list.append(FCCrystalModel.__name__)
518       
519        from sans.models.BCCrystalModel import BCCrystalModel
520        self.model_dictionary[BCCrystalModel.__name__] = BCCrystalModel
521#        self.shape_list.append(BCCrystalModel)
522        self.model_name_list.append(BCCrystalModel.__name__)
523     
524        ## Structure factor
525        from sans.models.SquareWellStructure import SquareWellStructure
526        self.model_dictionary[SquareWellStructure.__name__] = SquareWellStructure
527        self.struct_list.append(SquareWellStructure)
528        self.model_name_list.append(SquareWellStructure.__name__)
529       
530        from sans.models.HardsphereStructure import HardsphereStructure
531        self.model_dictionary[HardsphereStructure.__name__] = HardsphereStructure
532        self.struct_list.append(HardsphereStructure)
533        self.model_name_list.append(HardsphereStructure.__name__)
534         
535        from sans.models.StickyHSStructure import StickyHSStructure
536        self.model_dictionary[StickyHSStructure.__name__] = StickyHSStructure
537        self.struct_list.append(StickyHSStructure)
538        self.model_name_list.append(StickyHSStructure.__name__)
539       
540        from sans.models.HayterMSAStructure import HayterMSAStructure
541        self.model_dictionary[HayterMSAStructure.__name__] = HayterMSAStructure
542        self.struct_list.append(HayterMSAStructure)
543        self.model_name_list.append(HayterMSAStructure.__name__)
544
545
546        ##shape-independent models
547        from sans.models.PowerLawAbsModel import PowerLawAbsModel
548        self.model_dictionary[PowerLawAbsModel.__name__] = PowerLawAbsModel
549#        self.shape_indep_list.append(PowerLawAbsModel)
550        self.model_name_list.append(PowerLawAbsModel.__name__)
551       
552        from sans.models.BEPolyelectrolyte import BEPolyelectrolyte
553        self.model_dictionary[BEPolyelectrolyte.__name__] = BEPolyelectrolyte
554#        self.shape_indep_list.append(BEPolyelectrolyte)
555        self.model_name_list.append(BEPolyelectrolyte.__name__)
556        self.form_factor_dict[str(wx.NewId())] =  [SphereModel]
557       
558        from sans.models.BroadPeakModel import BroadPeakModel
559        self.model_dictionary[BroadPeakModel.__name__] = BroadPeakModel
560#        self.shape_indep_list.append(BroadPeakModel)
561        self.model_name_list.append(BroadPeakModel.__name__)
562       
563        from sans.models.CorrLengthModel import CorrLengthModel
564        self.model_dictionary[CorrLengthModel.__name__] = CorrLengthModel
565#        self.shape_indep_list.append(CorrLengthModel)
566        self.model_name_list.append(CorrLengthModel.__name__)
567       
568        from sans.models.DABModel import DABModel
569        self.model_dictionary[DABModel.__name__] = DABModel
570#        self.shape_indep_list.append(DABModel)
571        self.model_name_list.append(DABModel.__name__)
572       
573        from sans.models.DebyeModel import DebyeModel
574        self.model_dictionary[DebyeModel.__name__] = DebyeModel
575#        self.shape_indep_list.append(DebyeModel)
576        self.model_name_list.append(DebyeModel.__name__)
577       
578        from sans.models.FractalModel import FractalModel
579        self.model_dictionary[FractalModel.__name__] = FractalModel
580#        self.shape_indep_list.append(FractalModel)
581        self.model_name_list.append(FractalModel.__name__)
582       
583        from sans.models.FractalCoreShellModel import FractalCoreShellModel
584        self.model_dictionary[FractalCoreShellModel.__name__] = FractalCoreShellModel
585#        self.shape_indep_list.append(FractalCoreShellModel)
586        self.model_name_list.append(FractalCoreShellModel.__name__)
587       
588        from sans.models.GaussLorentzGelModel import GaussLorentzGelModel
589        self.model_dictionary[GaussLorentzGelModel.__name__] = GaussLorentzGelModel
590#        self.shape_indep_list.append(GaussLorentzGelModel)
591        self.model_name_list.append(GaussLorentzGelModel.__name__)
592               
593        from sans.models.GuinierModel import GuinierModel
594        self.model_dictionary[GuinierModel.__name__] = GuinierModel
595#        self.shape_indep_list.append(GuinierModel)
596        self.model_name_list.append(GuinierModel.__name__)
597       
598        from sans.models.GuinierPorodModel import GuinierPorodModel
599        self.model_dictionary[GuinierPorodModel.__name__] = GuinierPorodModel
600#        self.shape_indep_list.append(GuinierPorodModel)
601        self.model_name_list.append(GuinierPorodModel.__name__)
602
603        from sans.models.LorentzModel import LorentzModel
604        self.model_dictionary[LorentzModel.__name__] = LorentzModel
605#        self.shape_indep_list.append(LorentzModel)
606        self.model_name_list.append(LorentzModel.__name__)
607
608        from sans.models.MassFractalModel import MassFractalModel
609        self.model_dictionary[MassFractalModel.__name__] = MassFractalModel
610#        self.shape_indep_list.append(MassFractalModel)
611        self.model_name_list.append(MassFractalModel.__name__)
612       
613        from sans.models.MassSurfaceFractal import MassSurfaceFractal
614        self.model_dictionary[MassSurfaceFractal.__name__] = MassSurfaceFractal
615#        self.shape_indep_list.append(MassSurfaceFractal)
616        self.model_name_list.append(MassSurfaceFractal.__name__)
617       
618        from sans.models.PeakGaussModel import PeakGaussModel
619        self.model_dictionary[PeakGaussModel.__name__] = PeakGaussModel
620#        self.shape_indep_list.append(PeakGaussModel)
621        self.model_name_list.append(PeakGaussModel.__name__)
622       
623        from sans.models.PeakLorentzModel import PeakLorentzModel
624        self.model_dictionary[PeakLorentzModel.__name__] = PeakLorentzModel
625#        self.shape_indep_list.append(PeakLorentzModel)
626        self.model_name_list.append(PeakLorentzModel.__name__)
627       
628        from sans.models.Poly_GaussCoil import Poly_GaussCoil
629        self.model_dictionary[Poly_GaussCoil.__name__] = Poly_GaussCoil
630#        self.shape_indep_list.append(Poly_GaussCoil)
631        self.model_name_list.append(Poly_GaussCoil.__name__)
632       
633        from sans.models.PolymerExclVolume import PolymerExclVolume
634        self.model_dictionary[PolymerExclVolume.__name__] = PolymerExclVolume
635#        self.shape_indep_list.append(PolymerExclVolume)
636        self.model_name_list.append(PolymerExclVolume.__name__)
637       
638        from sans.models.PorodModel import PorodModel
639        self.model_dictionary[PorodModel.__name__] = PorodModel
640#        self.shape_indep_list.append(PorodModel)
641        self.model_name_list.append(PorodModel.__name__)
642       
643        from sans.models.RPA10Model import RPA10Model
644        self.model_dictionary[RPA10Model.__name__] = RPA10Model
645#        self.shape_indep_list.append(RPA10Model)
646        self.multi_func_list.append(RPA10Model)
647
648        from sans.models.StarPolymer import StarPolymer
649        self.model_dictionary[StarPolymer.__name__] = StarPolymer
650#        self.shape_indep_list.append(StarPolymer)
651        self.model_name_list.append(StarPolymer.__name__)
652
653        from sans.models.SurfaceFractalModel import SurfaceFractalModel
654        self.model_dictionary[SurfaceFractalModel.__name__] = SurfaceFractalModel
655#        self.shape_indep_list.append(SurfaceFractalModel)
656        self.model_name_list.append(SurfaceFractalModel.__name__)
657       
658        from sans.models.TeubnerStreyModel import TeubnerStreyModel
659        self.model_dictionary[TeubnerStreyModel.__name__] = TeubnerStreyModel
660#        self.shape_indep_list.append(TeubnerStreyModel)
661        self.model_name_list.append(TeubnerStreyModel.__name__)
662
663        from sans.models.TwoLorentzianModel import TwoLorentzianModel
664        self.model_dictionary[TwoLorentzianModel.__name__] = TwoLorentzianModel
665#        self.shape_indep_list.append(TwoLorentzianModel)
666        self.model_name_list.append(TwoLorentzianModel.__name__)
667       
668        from sans.models.TwoPowerLawModel import TwoPowerLawModel
669        self.model_dictionary[TwoPowerLawModel.__name__] = TwoPowerLawModel
670#        self.shape_indep_list.append(TwoPowerLawModel)
671        self.model_name_list.append(TwoPowerLawModel.__name__)
672       
673        from sans.models.UnifiedPowerRgModel import UnifiedPowerRgModel
674        self.model_dictionary[UnifiedPowerRgModel.__name__] = UnifiedPowerRgModel
675#        self.shape_indep_list.append(UnifiedPowerRgModel)
676        self.multi_func_list.append(UnifiedPowerRgModel)
677
678        from sans.models.LineModel import LineModel
679        self.model_dictionary[LineModel.__name__] = LineModel
680#        self.shape_indep_list.append(LineModel)
681        self.model_name_list.append(LineModel.__name__)
682       
683        from sans.models.ReflectivityModel import ReflectivityModel
684        self.model_dictionary[ReflectivityModel.__name__] = ReflectivityModel
685#        self.shape_indep_list.append(ReflectivityModel)
686        self.multi_func_list.append(ReflectivityModel)
687       
688        from sans.models.ReflectivityIIModel import ReflectivityIIModel
689        self.model_dictionary[ReflectivityIIModel.__name__] = ReflectivityIIModel
690#        self.shape_indep_list.append(ReflectivityIIModel)
691        self.multi_func_list.append(ReflectivityIIModel)
692       
693        from sans.models.GelFitModel import GelFitModel
694        self.model_dictionary[GelFitModel.__name__] = GelFitModel
695#        self.shape_indep_list.append(GelFitModel)
696        self.model_name_list.append(GelFitModel.__name__)
697
698        from sans.models.PringlesModel import PringlesModel
699        self.model_dictionary[PringlesModel.__name__] = PringlesModel
700#        self.shape_indep_list.append(PringlesModel)
701        self.model_name_list.append(PringlesModel.__name__)
702
703        from sans.models.RectangularPrismModel import RectangularPrismModel
704        self.model_dictionary[RectangularPrismModel.__name__] = RectangularPrismModel
705#        self.shape_list.append(RectangularPrismModel)
706        self.multiplication_factor.append(RectangularPrismModel)
707        self.model_name_list.append(RectangularPrismModel.__name__)
708
709        from sans.models.RectangularHollowPrismInfThinWallsModel import RectangularHollowPrismInfThinWallsModel
710        self.model_dictionary[RectangularHollowPrismInfThinWallsModel.__name__] = RectangularHollowPrismInfThinWallsModel
711#        self.shape_list.append(RectangularHollowPrismInfThinWallsModel)
712        self.multiplication_factor.append(RectangularHollowPrismInfThinWallsModel)
713        self.model_name_list.append(RectangularHollowPrismInfThinWallsModel.__name__)
714
715        from sans.models.RectangularHollowPrismModel import RectangularHollowPrismModel
716        self.model_dictionary[RectangularHollowPrismModel.__name__] = RectangularHollowPrismModel
717#        self.shape_list.append(RectangularHollowPrismModel)
718        self.multiplication_factor.append(RectangularHollowPrismModel)
719        self.model_name_list.append(RectangularHollowPrismModel.__name__)
720
721        from sans.models.MicelleSphCoreModel import MicelleSphCoreModel
722        self.model_dictionary[MicelleSphCoreModel.__name__] = MicelleSphCoreModel
723#        self.shape_list.append(MicelleSphCoreModel)
724        self.multiplication_factor.append(MicelleSphCoreModel)
725        self.model_name_list.append(MicelleSphCoreModel.__name__)
726
727
728        #from sans.models.FractalO_Z import FractalO_Z
729        #self.model_dictionary[FractalO_Z.__name__] = FractalO_Z
730        #self.shape_indep_list.append(FractalO_Z)
731        #self.model_name_list.append(FractalO_Z.__name__)
732   
733        #Looking for plugins
734        self.stored_plugins = self.findModels()
735        self.plugins = self.stored_plugins.values()
736        for name, plug in self.stored_plugins.iteritems():
737            self.model_dictionary[name] = plug
738           
739        self._get_multifunc_models()
740       
741        return 0
742
743    def is_changed(self):
744        """
745        check the last time the plugin dir has changed and return true
746         is the directory was modified else return false
747        """
748        is_modified = False
749        plugin_dir = find_plugins_dir()
750        if os.path.isdir(plugin_dir):
751            temp = os.path.getmtime(plugin_dir)
752            if  self.last_time_dir_modified != temp:
753                is_modified = True
754                self.last_time_dir_modified = temp
755       
756        return is_modified
757   
758    def update(self):
759        """
760        return a dictionary of model if
761        new models were added else return empty dictionary
762        """
763        new_plugins = self.findModels()
764        if len(new_plugins) > 0:
765            for name, plug in  new_plugins.iteritems():
766                if name not in self.stored_plugins.keys():
767                    self.stored_plugins[name] = plug
768                    self.plugins.append(plug)
769                    self.model_dictionary[name] = plug
770            self.model_combobox.set_list("Customized Models", self.plugins)
771            return self.model_combobox.get_list()
772        else:
773            return {}
774   
775    def pulgins_reset(self):
776        """
777        return a dictionary of model
778        """
779        self.plugins = []
780        new_plugins = _findModels(dir)
781        for name, plug in  new_plugins.iteritems():
782            for stored_name, stored_plug in self.stored_plugins.iteritems():
783                if name == stored_name:
784                    del self.stored_plugins[name]
785                    del self.model_dictionary[name]
786                    break
787            self.stored_plugins[name] = plug
788            self.plugins.append(plug)
789            self.model_dictionary[name] = plug
790
791        self.model_combobox.reset_list("Customized Models", self.plugins)
792        return self.model_combobox.get_list()
793       
794##   I believe the next four methods are for the old form factor GUI
795##   where the dropdown showed a list of categories which then rolled out
796##   in a second dropdown to the side. Some testing shows they indeed no longer
797##   seem to be called.  If no problems are found during testing of release we
798##   can remove this huge chunck of stuff.
799##
800##   -PDB  April 26, 2014
801
802#   def populate_menu(self, modelmenu, event_owner):
803#       """
804#       Populate a menu with our models
805#       
806#       :param id: first menu event ID to use when binding the menu events
807#       :param modelmenu: wx.Menu object to populate
808#       :param event_owner: wx object to bind the menu events to
809#       
810#       :return: the next free event ID following the new menu events
811#       
812#       """
813#
814        ## Fill model lists
815#        self._getModelList()
816        ## store reference to model menu of guiframe
817#        self.modelmenu = modelmenu
818        ## guiframe reference
819#        self.event_owner = event_owner
820       
821#        shape_submenu = wx.Menu()
822#        shape_indep_submenu = wx.Menu()
823#        structure_factor = wx.Menu()
824#        added_models = wx.Menu()
825#        multip_models = wx.Menu()
826        ## create menu with shape
827#        self._fill_simple_menu(menuinfo=["Shapes",
828#                                         shape_submenu,
829#                                         " simple shape"],
830#                         list1=self.shape_list)
831       
832#        self._fill_simple_menu(menuinfo=["Shape-Independent",
833#                                         shape_indep_submenu,
834#                                         "List of shape-independent models"],
835#                         list1=self.shape_indep_list)
836       
837#        self._fill_simple_menu(menuinfo=["Structure Factors",
838#                                         structure_factor,
839#                                         "List of Structure factors models"],
840#                                list1=self.struct_list)
841       
842#        self._fill_plugin_menu(menuinfo=["Customized Models", added_models,
843#                                            "List of additional models"],
844#                                 list1=self.plugins)
845       
846#        self._fill_menu(menuinfo=["P(Q)*S(Q)", multip_models,
847#                                  "mulplication of 2 models"],
848#                                   list1=self.multiplication_factor,
849#                                   list2=self.struct_list)
850#        return 0
851   
852#    def _fill_plugin_menu(self, menuinfo, list1):
853#        """
854#        fill the plugin menu with costumized models
855#        """
856#        print ("got to fill plugin menu")
857#        if len(list1) == 0:
858#            id = wx.NewId()
859#            msg = "No model available check plugins.log for errors to fix problem"
860#            menuinfo[1].Append(int(id), "Empty", msg)
861#        self._fill_simple_menu(menuinfo, list1)
862       
863#   def _fill_simple_menu(self, menuinfo, list1):
864#       """
865#       Fill the menu with list item
866#       
867#       :param modelmenu: the menu to fill
868#       :param menuinfo: submenu item for the first column of this modelmenu
869#                        with info.Should be a list :
870#                        [name(string) , menu(wx.menu), help(string)]
871#       :param list1: contains item (form factor )to fill modelmenu second column
872#       
873#       """
874#       if len(list1) > 0:
875#           self.model_combobox.set_list(menuinfo[0], list1)
876           
877#            for item in list1:
878#                try:
879#                    id = wx.NewId()
880#                    struct_factor = item()
881#                    struct_name = struct_factor.__class__.__name__
882#                    if hasattr(struct_factor, "name"):
883#                        struct_name = struct_factor.name
884#                       
885#                    menuinfo[1].Append(int(id), struct_name, struct_name)
886#                    if not  item in self.struct_factor_dict.itervalues():
887#                        self.struct_factor_dict[str(id)] = item
888#                    wx.EVT_MENU(self.event_owner, int(id), self._on_model)
889#                except:
890#                    msg = "Error Occured: %s" % sys.exc_value
891#                    wx.PostEvent(self.event_owner, StatusEvent(status=msg))
892#               
893#        id = wx.NewId()
894#        self.modelmenu.AppendMenu(id, menuinfo[0], menuinfo[1], menuinfo[2])
895#       
896#    def _fill_menu(self, menuinfo, list1, list2):
897#        """
898#        Fill the menu with list item
899#       
900#        :param menuinfo: submenu item for the first column of this modelmenu
901#                         with info.Should be a list :
902#                         [name(string) , menu(wx.menu), help(string)]
903#        :param list1: contains item (form factor )to fill modelmenu second column
904#        :param list2: contains item (Structure factor )to fill modelmenu
905#                third column
906#               
907#        """
908#        if len(list1) > 0:
909#            self.model_combobox.set_list(menuinfo[0], list1)
910#           
911#            for item in list1:
912#                form_factor = item()
913#                form_name = form_factor.__class__.__name__
914#                if hasattr(form_factor, "name"):
915#                    form_name = form_factor.name
916#                ### store form factor to return to other users
917#                newmenu = wx.Menu()
918#                if len(list2) > 0:
919#                    for model  in list2:
920#                        id = wx.NewId()
921#                        struct_factor = model()
922#                        name = struct_factor.__class__.__name__
923#                        if hasattr(struct_factor, "name"):
924#                            name = struct_factor.name
925#                        newmenu.Append(id, name, name)
926#                        wx.EVT_MENU(self.event_owner, int(id), self._on_model)
927#                        ## save form_fact and struct_fact
928#                        self.form_factor_dict[int(id)] = [form_factor,
929#                                                          struct_factor]
930#                       
931#                form_id = wx.NewId()
932#                menuinfo[1].AppendMenu(int(form_id), form_name,
933#                                       newmenu, menuinfo[2])
934#        id = wx.NewId()
935#        self.modelmenu.AppendMenu(id, menuinfo[0], menuinfo[1], menuinfo[2])
936       
937    def _on_model(self, evt):
938        """
939        React to a model menu event
940       
941        :param event: wx menu event
942       
943        """
944        if int(evt.GetId()) in self.form_factor_dict.keys():
945            from sans.models.MultiplicationModel import MultiplicationModel
946            self.model_dictionary[MultiplicationModel.__name__] = MultiplicationModel
947            model1, model2 = self.form_factor_dict[int(evt.GetId())]
948            model = MultiplicationModel(model1, model2)
949        else:
950            model = self.struct_factor_dict[str(evt.GetId())]()
951       
952        #TODO: investigate why the following two lines were left in the code
953        #      even though the ModelEvent class doesn't exist
954        #evt = ModelEvent(model=model)
955        #wx.PostEvent(self.event_owner, evt)
956       
957    def _get_multifunc_models(self):
958        """
959        Get the multifunctional models
960        """
961        for item in self.plugins:
962            try:
963                # check the multiplicity if any
964                if item.multiplicity_info[0] > 1:
965                    self.multi_func_list.append(item)
966            except:
967                # pass to other items
968                pass
969                   
970    def get_model_list(self):
971        """
972        return dictionary of models for fitpanel use
973       
974        """
975        ## Model_list now only contains attribute lists not category list.
976        ## Eventually this should be in one master list -- read in category
977        ## list then pull those models that exist and get attributes then add
978        ## to list ..and if model does not exist remove from list as now
979        ## and update json file.
980        ##
981        ## -PDB   April 26, 2014
982       
983#        self.model_combobox.set_list("Shapes", self.shape_list)
984#        self.model_combobox.set_list("Shape-Independent",
985#                                     self.shape_indep_list)
986        self.model_combobox.set_list("Structure Factors", self.struct_list)
987        self.model_combobox.set_list("Customized Models", self.plugins)
988        self.model_combobox.set_list("P(Q)*S(Q)", self.multiplication_factor)
989        self.model_combobox.set_list("multiplication",
990                                     self.multiplication_factor)
991        self.model_combobox.set_list("Multi-Functions", self.multi_func_list)
992        return self.model_combobox.get_list()
993   
994    def get_model_name_list(self):
995        """
996        return regular model name list
997        """
998        return self.model_name_list
999
1000    def get_model_dictionary(self):
1001        """
1002        return dictionary linking model names to objects
1003        """
1004        return self.model_dictionary
1005 
1006       
1007class ModelManager(object):
1008    """
1009    implement model
1010    """
1011    __modelmanager = ModelManagerBase()
1012    cat_model_list = [model_name for model_name \
1013                      in __modelmanager.model_dictionary.keys() \
1014                      if model_name not in __modelmanager.stored_plugins.keys()]
1015
1016    CategoryInstaller.check_install(model_list=cat_model_list)
1017    def findModels(self):
1018        return self.__modelmanager.findModels()
1019   
1020    def _getModelList(self):
1021        return self.__modelmanager._getModelList()
1022   
1023    def is_changed(self):
1024        return self.__modelmanager.is_changed()
1025   
1026    def update(self):
1027        return self.__modelmanager.update()
1028   
1029    def pulgins_reset(self):
1030        return self.__modelmanager.pulgins_reset()
1031   
1032    def populate_menu(self, modelmenu, event_owner):
1033        return self.__modelmanager.populate_menu(modelmenu, event_owner)
1034   
1035    def _on_model(self, evt):
1036        return self.__modelmanager._on_model(evt)
1037   
1038    def _get_multifunc_models(self):
1039        return self.__modelmanager._get_multifunc_models()
1040   
1041    def get_model_list(self):
1042        return self.__modelmanager.get_model_list()
1043   
1044    def get_model_name_list(self):
1045        return self.__modelmanager.get_model_name_list()
1046
1047    def get_model_dictionary(self):
1048        return self.__modelmanager.get_model_dictionary()
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