1 | #!/usr/bin/env python |
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2 | """ |
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3 | This software was developed by the University of Tennessee as part of the |
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4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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5 | project funded by the US National Science Foundation. |
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6 | |
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7 | If you use DANSE applications to do scientific research that leads to |
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8 | publication, we ask that you acknowledge the use of the software with the |
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9 | following sentence: |
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10 | |
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11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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12 | |
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13 | copyright 2008, University of Tennessee |
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14 | """ |
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15 | |
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16 | """ Provide functionality for a C extension model |
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17 | |
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18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\prolate.h |
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20 | AND RE-RUN THE GENERATOR SCRIPT |
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21 | |
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22 | """ |
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23 | |
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24 | from sans.models.BaseComponent import BaseComponent |
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25 | from sans_extension.c_models import CProlateModel |
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26 | import copy |
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27 | |
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28 | class ProlateModel(CProlateModel, BaseComponent): |
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29 | """ Class that evaluates a ProlateModel model. |
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30 | This file was auto-generated from ..\c_extensions\prolate.h. |
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31 | Refer to that file and the structure it contains |
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32 | for details of the model. |
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33 | List of default parameters: |
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34 | scale = 1.0 |
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35 | major_core = 100.0 [A] |
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36 | minor_core = 50.0 [A] |
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37 | major_shell = 110.0 [A] |
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38 | minor_shell = 60.0 [A] |
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39 | contrast = 1e-006 [1/A²] |
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40 | sld_solvent = 6.3e-006 [1/A²] |
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41 | background = 0.001 [1/cm] |
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42 | |
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43 | """ |
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44 | |
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45 | def __init__(self): |
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46 | """ Initialization """ |
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47 | |
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48 | # Initialize BaseComponent first, then sphere |
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49 | BaseComponent.__init__(self) |
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50 | CProlateModel.__init__(self) |
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51 | |
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52 | ## Name of the model |
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53 | self.name = "ProlateModel" |
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54 | ## Model description |
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55 | self.description ="""[ProlateCoreShellModel] Calculates the form factor for a prolate |
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56 | ellipsoid particle with a core_shell structure. |
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57 | The form factor is averaged over all possible |
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58 | orientations of the ellipsoid such that P(q) |
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59 | = scale*<f^2>/Vol + bkg, where f is the |
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60 | single particle scattering amplitude. |
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61 | [Parameters]: |
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62 | major_core = radius of major_core, |
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63 | minor_core = radius of minor_core, |
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64 | major_shell = radius of major_shell, |
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65 | minor_shell = radius of minor_shell, |
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66 | contrast = SLD_core - SLD_shell |
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67 | sld_solvent = SLD_solvent |
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68 | background = Incoherent bkg |
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69 | scale = scale |
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70 | Note:It is the users' responsibility to ensure |
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71 | that shell radii are larger than core radii.""" |
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72 | |
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73 | ## Parameter details [units, min, max] |
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74 | self.details = {} |
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75 | self.details['scale'] = ['', None, None] |
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76 | self.details['major_core'] = ['[A]', None, None] |
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77 | self.details['minor_core'] = ['[A]', None, None] |
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78 | self.details['major_shell'] = ['[A]', None, None] |
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79 | self.details['minor_shell'] = ['[A]', None, None] |
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80 | self.details['contrast'] = ['[1/A²]', None, None] |
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81 | self.details['sld_solvent'] = ['[1/A²]', None, None] |
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82 | self.details['background'] = ['[1/cm]', None, None] |
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83 | |
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84 | ## fittable parameters |
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85 | self.fixed=['major_core.width', 'minor_core.width', 'major_shell.width', 'minor_shell.width'] |
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86 | |
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87 | ## parameters with orientation |
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88 | self.orientation_params =[] |
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89 | |
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90 | def clone(self): |
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91 | """ Return a identical copy of self """ |
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92 | return self._clone(ProlateModel()) |
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93 | |
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94 | def run(self, x = 0.0): |
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95 | """ Evaluate the model |
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96 | @param x: input q, or [q,phi] |
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97 | @return: scattering function P(q) |
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98 | """ |
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99 | |
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100 | return CProlateModel.run(self, x) |
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101 | |
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102 | def runXY(self, x = 0.0): |
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103 | """ Evaluate the model in cartesian coordinates |
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104 | @param x: input q, or [qx, qy] |
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105 | @return: scattering function P(q) |
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106 | """ |
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107 | |
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108 | return CProlateModel.runXY(self, x) |
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109 | |
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110 | def evalDistribition(self, x = []): |
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111 | """ Evaluate the model in cartesian coordinates |
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112 | @param x: input q[], or [qx[], qy[]] |
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113 | @return: scattering function P(q[]) |
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114 | """ |
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115 | return CProlateModel.evalDistribition(self, x) |
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116 | |
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117 | def calculate_ER(self): |
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118 | """ Calculate the effective radius for P(q)*S(q) |
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119 | @param x: input q, or [q,phi] |
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120 | @return: the value of the effective radius |
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121 | """ |
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122 | return CProlateModel.calculate_ER(self) |
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123 | |
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124 | def set_dispersion(self, parameter, dispersion): |
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125 | """ |
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126 | Set the dispersion object for a model parameter |
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127 | @param parameter: name of the parameter [string] |
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128 | @dispersion: dispersion object of type DispersionModel |
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129 | """ |
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130 | return CProlateModel.set_dispersion(self, parameter, dispersion.cdisp) |
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131 | |
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132 | |
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133 | # End of file |
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