[ae3ce4e] | 1 | #!/usr/bin/env python |
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[95986b5] | 2 | """ |
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| 3 | This software was developed by the University of Tennessee as part of the |
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| 4 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 5 | project funded by the US National Science Foundation. |
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| 6 | |
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| 7 | If you use DANSE applications to do scientific research that leads to |
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| 8 | publication, we ask that you acknowledge the use of the software with the |
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| 9 | following sentence: |
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| 10 | |
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| 11 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 12 | |
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| 13 | copyright 2008, University of Tennessee |
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| 14 | """ |
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| 15 | |
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[ae3ce4e] | 16 | """ Provide functionality for a C extension model |
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| 17 | |
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| 18 | WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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[836fe6e] | 19 | DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\elliptical_cylinder.h |
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[ae3ce4e] | 20 | AND RE-RUN THE GENERATOR SCRIPT |
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| 21 | |
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| 22 | """ |
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| 23 | |
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| 24 | from sans.models.BaseComponent import BaseComponent |
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| 25 | from sans_extension.c_models import CEllipticalCylinderModel |
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| 26 | import copy |
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| 27 | |
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| 28 | class EllipticalCylinderModel(CEllipticalCylinderModel, BaseComponent): |
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| 29 | """ Class that evaluates a EllipticalCylinderModel model. |
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[fe9c19b4] | 30 | This file was auto-generated from ..\c_extensions\elliptical_cylinder.h. |
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| 31 | Refer to that file and the structure it contains |
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| 32 | for details of the model. |
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| 33 | List of default parameters: |
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[ae3ce4e] | 34 | scale = 1.0 |
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[1ed3834] | 35 | r_minor = 20.0 [A] |
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[0824909] | 36 | r_ratio = 1.5 |
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[1ed3834] | 37 | length = 400.0 [A] |
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[f10063e] | 38 | sldCyl = 4e-006 [1/A^(2)] |
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| 39 | sldSolv = 1e-006 [1/A^(2)] |
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[0824909] | 40 | background = 0.0 [1/cm] |
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| 41 | cyl_theta = 1.57 [rad] |
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| 42 | cyl_phi = 0.0 [rad] |
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| 43 | cyl_psi = 0.0 [rad] |
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[ae3ce4e] | 44 | |
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| 45 | """ |
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| 46 | |
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| 47 | def __init__(self): |
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| 48 | """ Initialization """ |
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| 49 | |
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| 50 | # Initialize BaseComponent first, then sphere |
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| 51 | BaseComponent.__init__(self) |
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| 52 | CEllipticalCylinderModel.__init__(self) |
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| 53 | |
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| 54 | ## Name of the model |
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| 55 | self.name = "EllipticalCylinderModel" |
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[836fe6e] | 56 | ## Model description |
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[7ad9887] | 57 | self.description =""" Model parameters: r_minor = the radius of minor axis of the cross section |
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| 58 | r_ratio = the ratio of (r_major /r_minor >= 1) |
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| 59 | length = the length of the cylinder |
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[f10063e] | 60 | sldCyl = SLD of the cylinder |
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| 61 | sldSolv = SLD of solvent - |
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[7ad9887] | 62 | background = incoherent background""" |
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[836fe6e] | 63 | |
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[fe9c19b4] | 64 | ## Parameter details [units, min, max] |
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[ae3ce4e] | 65 | self.details = {} |
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| 66 | self.details['scale'] = ['', None, None] |
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[1ed3834] | 67 | self.details['r_minor'] = ['[A]', None, None] |
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[0824909] | 68 | self.details['r_ratio'] = ['', None, None] |
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[1ed3834] | 69 | self.details['length'] = ['[A]', None, None] |
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[f10063e] | 70 | self.details['sldCyl'] = ['[1/A^(2)]', None, None] |
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| 71 | self.details['sldSolv'] = ['[1/A^(2)]', None, None] |
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[0824909] | 72 | self.details['background'] = ['[1/cm]', None, None] |
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| 73 | self.details['cyl_theta'] = ['[rad]', None, None] |
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| 74 | self.details['cyl_phi'] = ['[rad]', None, None] |
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| 75 | self.details['cyl_psi'] = ['[rad]', None, None] |
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[836fe6e] | 76 | |
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[fe9c19b4] | 77 | ## fittable parameters |
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[975ec8e] | 78 | self.fixed=['cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width', 'length.width', 'r_minor.width', 'r_ratio.width'] |
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[25a608f5] | 79 | |
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| 80 | ## parameters with orientation |
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| 81 | self.orientation_params =['cyl_phi', 'cyl_theta', 'cyl_psi', 'cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width'] |
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[ae3ce4e] | 82 | |
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| 83 | def clone(self): |
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| 84 | """ Return a identical copy of self """ |
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[95986b5] | 85 | return self._clone(EllipticalCylinderModel()) |
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[fe9c19b4] | 86 | |
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| 87 | def __getstate__(self): |
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| 88 | """ return object state for pickling and copying """ |
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| 89 | model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log} |
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| 90 | |
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| 91 | return self.__dict__, model_state |
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| 92 | |
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| 93 | def __setstate__(self, state): |
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| 94 | """ create object from pickled state """ |
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| 95 | |
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| 96 | self.__dict__, model_state = state |
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| 97 | self.params = model_state['params'] |
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| 98 | self.dispersion = model_state['dispersion'] |
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| 99 | self.log = model_state['log'] |
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| 100 | |
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[ae3ce4e] | 101 | |
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| 102 | def run(self, x = 0.0): |
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| 103 | """ Evaluate the model |
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| 104 | @param x: input q, or [q,phi] |
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| 105 | @return: scattering function P(q) |
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| 106 | """ |
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| 107 | |
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| 108 | return CEllipticalCylinderModel.run(self, x) |
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| 109 | |
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| 110 | def runXY(self, x = 0.0): |
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| 111 | """ Evaluate the model in cartesian coordinates |
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| 112 | @param x: input q, or [qx, qy] |
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| 113 | @return: scattering function P(q) |
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| 114 | """ |
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| 115 | |
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| 116 | return CEllipticalCylinderModel.runXY(self, x) |
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[95986b5] | 117 | |
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[f9a1279] | 118 | def evalDistribution(self, x = []): |
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[9bd69098] | 119 | """ Evaluate the model in cartesian coordinates |
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| 120 | @param x: input q[], or [qx[], qy[]] |
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| 121 | @return: scattering function P(q[]) |
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| 122 | """ |
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[f9a1279] | 123 | return CEllipticalCylinderModel.evalDistribution(self, x) |
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[9bd69098] | 124 | |
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[5eb9154] | 125 | def calculate_ER(self): |
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| 126 | """ Calculate the effective radius for P(q)*S(q) |
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| 127 | @return: the value of the effective radius |
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| 128 | """ |
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| 129 | return CEllipticalCylinderModel.calculate_ER(self) |
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| 130 | |
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[95986b5] | 131 | def set_dispersion(self, parameter, dispersion): |
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| 132 | """ |
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| 133 | Set the dispersion object for a model parameter |
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| 134 | @param parameter: name of the parameter [string] |
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| 135 | @dispersion: dispersion object of type DispersionModel |
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| 136 | """ |
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| 137 | return CEllipticalCylinderModel.set_dispersion(self, parameter, dispersion.cdisp) |
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| 138 | |
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[ae3ce4e] | 139 | |
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| 140 | # End of file |
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