source: sasview/sansmodels/src/sans/models/EllipticalCylinderModel.py @ 353f467

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Last change on this file since 353f467 was f10063e, checked in by Jae Cho <jhjcho@…>, 15 years ago

Updated the definition of SLD params according to new libigor functions

  • Property mode set to 100644
File size: 5.3 KB
Line 
1#!/usr/bin/env python
2"""
3        This software was developed by the University of Tennessee as part of the
4        Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
5        project funded by the US National Science Foundation.
6
7        If you use DANSE applications to do scientific research that leads to
8        publication, we ask that you acknowledge the use of the software with the
9        following sentence:
10
11        "This work benefited from DANSE software developed under NSF award DMR-0520547."
12
13        copyright 2008, University of Tennessee
14"""
15
16""" Provide functionality for a C extension model
17
18        WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
19                 DO NOT MODIFY THIS FILE, MODIFY ..\c_extensions\elliptical_cylinder.h
20                 AND RE-RUN THE GENERATOR SCRIPT
21
22"""
23
24from sans.models.BaseComponent import BaseComponent
25from sans_extension.c_models import CEllipticalCylinderModel
26import copy   
27   
28class EllipticalCylinderModel(CEllipticalCylinderModel, BaseComponent):
29    """ Class that evaluates a EllipticalCylinderModel model.
30        This file was auto-generated from ..\c_extensions\elliptical_cylinder.h.
31        Refer to that file and the structure it contains
32        for details of the model.
33        List of default parameters:
34         scale           = 1.0
35         r_minor         = 20.0 [A]
36         r_ratio         = 1.5
37         length          = 400.0 [A]
38         sldCyl          = 4e-006 [1/A^(2)]
39         sldSolv         = 1e-006 [1/A^(2)]
40         background      = 0.0 [1/cm]
41         cyl_theta       = 1.57 [rad]
42         cyl_phi         = 0.0 [rad]
43         cyl_psi         = 0.0 [rad]
44
45    """
46       
47    def __init__(self):
48        """ Initialization """
49       
50        # Initialize BaseComponent first, then sphere
51        BaseComponent.__init__(self)
52        CEllipticalCylinderModel.__init__(self)
53       
54        ## Name of the model
55        self.name = "EllipticalCylinderModel"
56        ## Model description
57        self.description =""" Model parameters: r_minor = the radius of minor axis of the cross section
58                r_ratio = the ratio of (r_major /r_minor >= 1)
59                length = the length of the cylinder
60                sldCyl = SLD of the cylinder
61                sldSolv = SLD of solvent -
62                background = incoherent background"""
63       
64        ## Parameter details [units, min, max]
65        self.details = {}
66        self.details['scale'] = ['', None, None]
67        self.details['r_minor'] = ['[A]', None, None]
68        self.details['r_ratio'] = ['', None, None]
69        self.details['length'] = ['[A]', None, None]
70        self.details['sldCyl'] = ['[1/A^(2)]', None, None]
71        self.details['sldSolv'] = ['[1/A^(2)]', None, None]
72        self.details['background'] = ['[1/cm]', None, None]
73        self.details['cyl_theta'] = ['[rad]', None, None]
74        self.details['cyl_phi'] = ['[rad]', None, None]
75        self.details['cyl_psi'] = ['[rad]', None, None]
76
77        ## fittable parameters
78        self.fixed=['cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width', 'length.width', 'r_minor.width', 'r_ratio.width']
79       
80        ## parameters with orientation
81        self.orientation_params =['cyl_phi', 'cyl_theta', 'cyl_psi', 'cyl_phi.width', 'cyl_theta.width', 'cyl_psi.width']
82   
83    def clone(self):
84        """ Return a identical copy of self """
85        return self._clone(EllipticalCylinderModel())   
86       
87    def __getstate__(self):
88        """ return object state for pickling and copying """
89        model_state = {'params': self.params, 'dispersion': self.dispersion, 'log': self.log}
90       
91        return self.__dict__, model_state
92       
93    def __setstate__(self, state):
94        """ create object from pickled state """
95       
96        self.__dict__, model_state = state
97        self.params = model_state['params']
98        self.dispersion = model_state['dispersion']
99        self.log = model_state['log']
100       
101   
102    def run(self, x = 0.0):
103        """ Evaluate the model
104            @param x: input q, or [q,phi]
105            @return: scattering function P(q)
106        """
107       
108        return CEllipticalCylinderModel.run(self, x)
109   
110    def runXY(self, x = 0.0):
111        """ Evaluate the model in cartesian coordinates
112            @param x: input q, or [qx, qy]
113            @return: scattering function P(q)
114        """
115       
116        return CEllipticalCylinderModel.runXY(self, x)
117       
118    def evalDistribution(self, x = []):
119        """ Evaluate the model in cartesian coordinates
120            @param x: input q[], or [qx[], qy[]]
121            @return: scattering function P(q[])
122        """
123        return CEllipticalCylinderModel.evalDistribution(self, x)
124       
125    def calculate_ER(self):
126        """ Calculate the effective radius for P(q)*S(q)
127            @return: the value of the effective radius
128        """       
129        return CEllipticalCylinderModel.calculate_ER(self)
130       
131    def set_dispersion(self, parameter, dispersion):
132        """
133            Set the dispersion object for a model parameter
134            @param parameter: name of the parameter [string]
135            @dispersion: dispersion object of type DispersionModel
136        """
137        return CEllipticalCylinderModel.set_dispersion(self, parameter, dispersion.cdisp)
138       
139   
140# End of file
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