gen_scatter_panel.py @ 1b28ff5

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.1.1release-4.1.2release-4.2.2release_4.0.1ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload

Last change on this file since 1b28ff5 was dbc01f2, checked in by Jae Cho <jhjcho@…>, 12 years ago
fixed and added some features in pdb reader
Property mode set to `100644`
File size: 66.9 KB

Line
1	"""
2	Generic Scattering panel.
3	This module relies on guiframe manager.
4	"""
5
6	import wx
7	import sys
8	import os
9	import numpy
10	#import math
11	import wx.aui as aui
12	#import wx.lib.agw.aui as aui
13	import logging
14	import time
15
16	import matplotlib
17	matplotlib.interactive(False)
18	#Use the WxAgg back end. The Wx one takes too long to render
19	matplotlib.use('WXAgg')
20
21	from data_util.calcthread import CalcThread
22	from sans.guiframe.local_perspectives.plotting.SimplePlot import PlotFrame
23	from sans.guiframe.dataFitting import Data2D
24	from sans.dataloader.data_info import Detector
25	from sans.dataloader.data_info import Source
26	from sans.guiframe.panel_base import PanelBase
27	from sans.guiframe.utils import format_number
28	from sans.guiframe.events import StatusEvent
29	from sans.calculator import sans_gen
30	from calculator_widgets import OutputTextCtrl
31	from calculator_widgets import InputTextCtrl
32	from wx.lib.scrolledpanel import ScrolledPanel
33	from sans.perspectives.calculator.load_thread import GenReader
34	from danse.common.plottools.arrow3d import Arrow3D
35
36	_BOX_WIDTH = 76
37	#Slit length panel size
38	if sys.platform.count("win32") > 0:
39	PANEL_WIDTH = 570
40	PANEL_HEIGHT = 370
41	FONT_VARIANT = 0
42	else:
43	PANEL_WIDTH = 620
44	PANEL_HEIGHT = 370
45	FONT_VARIANT = 1
46	_QMAX_DEFAULT = 0.3
47	_NPTS_DEFAULT = 50
48
49	def add_icon(parent, frame):
50	"""
51	Add icon in the frame
52	"""
53	if parent != None:
54	if hasattr(frame, "IsIconized"):
55	if not frame.IsIconized():
56	try:
57	icon = parent.GetIcon()
58	frame.SetIcon(icon)
59	except:
60	pass
61
62	def _set_error(panel, item, show_msg=False):
63	"""
64	Set_error dialog
65	"""
66	if item != None:
67	item.SetBackgroundColour("pink")
68	item.Refresh()
69	if show_msg:
70	msg = "Error: wrong (or out of range) value entered."
71	if panel.parent.parent != None:
72	wx.PostEvent(panel.parent.parent,
73	StatusEvent(status=msg, info='Error' ))
74	panel.SetFocus()
75	return False
76
77	class CalcGen(CalcThread):
78	"""
79	Computation
80	"""
81	def __init__(self,
82	id=-1,
83	input = None,
84	completefn = None,
85	updatefn = None,
86	elapsed = 0,
87	yieldtime = 0.005,
88	worktime = 0.01):
89	"""
90	"""
91	CalcThread.__init__(self,completefn,
92	updatefn,
93	yieldtime,
94	worktime)
95	self.starttime = 0
96	self.id = id
97	self.input = input
98
99	def compute(self):
100	"""
101	excuting computation
102	"""
103	elapsed = time.time() - self.starttime
104
105	self.complete(input=self.input,
106	elapsed = elapsed)
107
108	class SasGenPanel(ScrolledPanel, PanelBase):
109	"""
110	Provides the sas gen calculator GUI.
111	"""
112	## Internal nickname for the window, used by the AUI manager
113	window_name = "Generic SANS Calculator"
114	## Name to appear on the window title bar
115	window_caption = "Generic SANS "
116	## Flag to tell the AUI manager to put this panel in the center pane
117	CENTER_PANE = True
118
119	def __init__(self, parent, args, *kwds):
120	ScrolledPanel.__init__(self, parent, style=wx.RAISED_BORDER,
121	args, *kwds)
122	#kwds['style'] = wx.SUNKEN_BORDER
123	PanelBase.__init__(self)
124	#Font size
125	self.SetWindowVariant(variant=FONT_VARIANT)
126	self.SetupScrolling()
127	#thread to read data
128	self.reader = None
129	self.ext = None
130	self.id = 'Generic Scattering'
131	self.file_name = ''
132	self.time_text = None
133	self.omfreader = sans_gen.OMFReader()
134	self.sldreader = sans_gen.SLDReader()
135	self.pdbreader = sans_gen.PDBReader()
136	self.model = sans_gen.GenSAS()
137	self.param_dic = self.model.params
138	self.parameters = []
139	self.data = None
140	self.scale2d = None
141	self.plot_frame = None
142	self.qmax_x = _QMAX_DEFAULT
143	self.npts_x = _NPTS_DEFAULT
144	self.sld_data = None
145	self.graph_num = 1
146	self.default_shape = 'rectangular'
147	# Object that receive status event
148	self.parent = parent
149	self._do_layout()
150	self._create_default_sld_data()
151	self._create_default_2d_data()
152	wx.CallAfter(self._set_sld_data_helper)
153
154	def _define_structure(self):
155	"""
156	Define the main sizers building to build this application.
157	"""
158	self.main_sizer = wx.BoxSizer(wx.VERTICAL)
159	self.box_source = wx.StaticBox(self, -1, str("SLD Data File"))
160	self.box_parameters = wx.StaticBox(self, -1, str("Input Parameters"))
161	self.box_qrange = wx.StaticBox(self, -1, str("Q Range"))
162	self.boxsizer_source = wx.StaticBoxSizer(self.box_source,
163	wx.VERTICAL)
164	self.boxsizer_parameters = wx.StaticBoxSizer(self.box_parameters,
165	wx.VERTICAL)
166	self.boxsizer_qrange = wx.StaticBoxSizer(self.box_qrange,
167	wx.VERTICAL)
168	self.data_name_sizer = wx.BoxSizer(wx.HORIZONTAL)
169	self.param_sizer = wx.BoxSizer(wx.HORIZONTAL)
170	self.shape_sizer = wx.BoxSizer(wx.HORIZONTAL)
171	self.hint_sizer = wx.BoxSizer(wx.HORIZONTAL)
172	self.qrange_sizer = wx.BoxSizer(wx.HORIZONTAL)
173	self.button_sizer = wx.BoxSizer(wx.HORIZONTAL)
174
175	def _layout_data_name(self):
176	"""
177	Fill the sizer containing data's name
178	"""
179	data_name_txt = wx.StaticText(self, -1, 'Data: ')
180	self.data_name_tcl = OutputTextCtrl(self, -1,
181	size=(_BOX_WIDTH * 4, -1))
182	data_hint = "Loaded data"
183	self.data_name_tcl.SetToolTipString(data_hint)
184	#control that triggers importing data
185	id = wx.NewId()
186	self.browse_button = wx.Button(self, id, "Load")
187	hint_on_browse = "Click on this button to load a data in this panel."
188	#self.browse_button.SetToolTipString(hint_on_browse)
189	self.Bind(wx.EVT_BUTTON, self.on_load_data, id=id)
190	self.data_name_sizer.AddMany([(data_name_txt, 0, wx.LEFT, 15),
191	(self.data_name_tcl, 0, wx.LEFT, 10),
192	(self.browse_button, 0, wx.LEFT, 10)])
193	def _layout_param_size(self):
194	"""
195	Fill the sizer containing slit size information
196	"""
197	self.parameters = []
198	sizer = wx.GridBagSizer(3, 6)
199	model = self.model
200	details = self.model.details
201	params = self.model.params
202	ix = 0
203	iy = 0
204	param_title = wx.StaticText(self, -1, 'Parameter')
205	sizer.Add(param_title, (iy, ix), (1, 1), \
206	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
207	ix += 1
208	value_title = wx.StaticText(self, -1, 'Value')
209	sizer.Add(value_title, (iy, ix), (1, 1), \
210	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
211	ix += 1
212	unit_title = wx.StaticText(self, -1, 'Unit')
213	sizer.Add(unit_title, (iy, ix), (1, 1), \
214	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
215	key_list = params.keys()
216	key_list.sort()
217	for param in key_list:
218	iy += 1
219	ix = 0
220	p_name = wx.StaticText(self, -1, param)
221	sizer.Add(p_name, (iy, ix), (1, 1), \
222	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
223	## add parameter value
224	ix += 1
225	value = model.getParam(param)
226	ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH * 2, 20),
227	style=wx.TE_PROCESS_ENTER)
228	#ctl.SetToolTipString(\
229	# "Hit 'Enter' after typing to update the plot.")
230	ctl.SetValue(format_number(value, True))
231	sizer.Add(ctl, (iy, ix), (1, 1), wx.EXPAND)
232	## add unit
233	ix += 1
234	unit = wx.StaticText(self, -1, details[param][0])
235	sizer.Add(unit, (iy, ix), (1, 1), \
236	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
237	self.parameters.append([p_name, ctl, unit])
238
239	self.param_sizer.Add(sizer, 0, wx.LEFT, 10)
240
241	def _layout_hint(self):
242	"""
243	Fill the sizer containing hint
244	"""
245	hint_msg = "We support the omf or sld data files only."
246	hint_msg += " "
247	if FONT_VARIANT < 1:
248	hint_msg += "Very "
249	hint_msg += "SLOW drawing -->"
250	hint_txt = wx.StaticText(self, -1, hint_msg)
251
252	id = wx.NewId()
253	self.draw_button = wx.Button(self, id, "Arrow Draw")
254	hint_on_draw = "Draw with arrows. Caution: it is a very slow drawing."
255	self.draw_button.SetToolTipString(hint_on_draw)
256	self.draw_button.Bind(wx.EVT_BUTTON, self.sld_draw, id=id)
257
258	self.draw_button.Enable(False)
259	self.hint_sizer.AddMany([(hint_txt, 0, wx.LEFT, 15),
260	(self.draw_button, 0, wx.LEFT, 15)])
261
262	def _layout_shape(self):
263	"""
264	Fill the shape sizer
265	"""
266	label_txt = wx.StaticText(self, -1, "Shape:")
267	self.shape_combo = self._fill_shape_combo()
268	self.shape_sizer.AddMany([(label_txt, 0, wx.LEFT, 15),
269	(self.shape_combo, 0, wx.LEFT, 5)])
270
271	def _fill_shape_combo(self):
272	"""
273	Fill up the shape combo box
274	"""
275	shape_combo = wx.ComboBox(self, -1, size=(150, -1),
276	style=wx.CB_READONLY)
277	shape_combo.Append('Rectangular')
278	shape_combo.Append('Ellipsoid')
279	shape_combo.Bind(wx.EVT_COMBOBOX, self._on_shape_select)
280	shape_combo.SetSelection(0)
281	return shape_combo
282
283	def _on_shape_select(self, event):
284	"""
285	On selecting a shape
286	"""
287	event.Skip()
288	label = event.GetEventObject().GetValue().lower()
289	self.default_shape = label
290	self.parent.set_omfpanel_default_shap(self.default_shape)
291	self.parent.set_omfpanel_npts()
292
293	def _layout_qrange(self):
294	"""
295	Fill the sizer containing qrange
296	"""
297	sizer = wx.GridBagSizer(2, 3)
298	ix = 0
299	iy = 0
300	#key_list.sort()
301	name = wx.StaticText(self, -1, 'No. of Qx (Qy) bins: ')
302	sizer.Add(name, (iy, ix), (1, 1), \
303	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
304	## add parameter value
305	ix += 1
306	self.npt_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH * 1.5, 20),
307	style=wx.TE_PROCESS_ENTER)
308	self.npt_ctl.Bind(wx.EVT_TEXT, self._onparamEnter)
309	self.npt_ctl.SetValue(format_number(self.npts_x, True))
310	sizer.Add(self.npt_ctl, (iy, ix), (1, 1), wx.EXPAND)
311	## add unit
312	ix += 1
313	unit = wx.StaticText(self, -1, '')
314	sizer.Add(unit, (iy, ix), (1, 1), \
315	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
316	iy += 1
317	ix = 0
318	name = wx.StaticText(self, -1, 'Qx (Qy) Max: ')
319	sizer.Add(name, (iy, ix), (1, 1), \
320	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
321	## add parameter value
322	ix += 1
323	self.qmax_ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH * 1.5, 20),
324	style=wx.TE_PROCESS_ENTER)
325	self.qmax_ctl.Bind(wx.EVT_TEXT, self._onparamEnter )
326	self.qmax_ctl.SetValue(format_number(self.qmax_x, True))
327	sizer.Add(self.qmax_ctl, (iy, ix), (1, 1), wx.EXPAND)
328	## add unit
329	ix += 1
330	unit = wx.StaticText(self, -1, '[1/A]')
331	sizer.Add(unit, (iy, ix), (1, 1), \
332	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
333	self.qrange_sizer.Add(sizer, 0, wx.LEFT, 10)
334
335	def _layout_button(self):
336	"""
337	Do the layout for the button widgets
338	"""
339	self.est_time = '*Estimated Computation time : %s sec'
340	self.time_text = wx.StaticText(self, -1, self.est_time% str(2) )
341	self.bt_compute = wx.Button(self, wx.NewId(),'Compute')
342	self.bt_compute.Bind(wx.EVT_BUTTON, self.on_compute)
343	self.bt_compute.SetToolTipString("Compute 2D Scattering Pattern.")
344	self.button_sizer.AddMany([(self.time_text , 0, wx.LEFT, 20),
345	(self.bt_compute, 0, wx.LEFT, 190)])
346
347	def estimate_ctime(self):
348	"""
349	"""
350	n_qbins = float(self.npt_ctl.GetValue())
351	n_qbins *= n_qbins
352	n_pixs = float(self.parent.get_npix())
353	x_in = n_qbins * n_pixs / 100000
354	# magic equation: not very accurate
355	etime = 1.0 + 0.14 * x_in
356	return int(etime)
357
358	def set_est_time(self):
359	"""
360	Set text for est. computation time
361	"""
362	if self.time_text != None:
363	etime = self.estimate_ctime()
364	self.time_text.SetLabel(self.est_time% str(etime))
365
366	def _do_layout(self):
367	"""
368	Draw window content
369	"""
370	self._define_structure()
371	self._layout_data_name()
372	self._layout_param_size()
373	self._layout_qrange()
374	self._layout_hint()
375	self._layout_shape()
376	self._layout_button()
377	self.boxsizer_source.AddMany([(self.data_name_sizer, 0,
378	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5),
379	(self.hint_sizer, 0,
380	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5),
381	(self.shape_sizer, 0,
382	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5)])
383	self.boxsizer_parameters.AddMany([(self.param_sizer, 0,
384	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5),])
385	self.boxsizer_qrange.AddMany([(self.qrange_sizer, 0,
386	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5),])
387	self.main_sizer.AddMany([(self.boxsizer_source, 0,
388	wx.EXPAND\|wx.ALL, 10),
389	(self.boxsizer_parameters, 0,
390	wx.EXPAND\|wx.ALL, 10),
391	(self.boxsizer_qrange, 0,
392	wx.EXPAND\|wx.ALL, 10),
393	(self.button_sizer, 0,
394	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5)])
395	self.SetSizer(self.main_sizer)
396	self.SetAutoLayout(True)
397
398	def _create_default_sld_data(self):
399	"""
400	Making default sld-data
401	"""
402	sld_n_default = 6.97e-06
403	omfdata = sans_gen.OMFData()
404	omf2sld = sans_gen.OMF2SLD()
405	omf2sld.set_data(omfdata, self.default_shape)
406	self.sld_data = omf2sld.output
407	self.sld_data.is_data = False
408	self.sld_data.filename = "Default SLD Profile"
409	self.sld_data.set_sldn(sld_n_default)
410	self.data_name_tcl.SetValue(self.sld_data.filename)
411
412	def choose_data_file(self, location=None):
413	"""
414	Choosing a dtata file
415	"""
416	path = None
417	filename = ''
418	if location == None:
419	location = os.getcwd()
420
421	omf_type = self.omfreader.type
422	sld_type = self.sldreader.type
423	pdb_type = self.pdbreader.type
424	wildcard = []
425	for type in sld_type:
426	wildcard.append(type)
427	for type in omf_type:
428	wildcard.append(type)
429	for type in pdb_type:
430	wildcard.append(type)
431	wildcard = '\|'.join(wildcard)
432	dlg = wx.FileDialog(self, "Choose a file", location,
433	"", wildcard, wx.OPEN)
434	if dlg.ShowModal() == wx.ID_OK:
435	path = dlg.GetPath()
436	filename = os.path.basename(path)
437	dlg.Destroy()
438	return path
439
440	def on_load_data(self, event):
441	"""
442	Open a file dialog to allow the user to select a given file.
443	The user is only allow to load file with extension .omf, .txt, .sld.
444	Display the slit size corresponding to the loaded data.
445	"""
446	location = self.parent.get_path()
447	path = self.choose_data_file(location=location)
448	if path is None:
449	return
450
451	self.shape_sizer.ShowItems(False)
452	self.default_shape = 'rectangular'
453	self.parent.set_omfpanel_default_shap(self.default_shape)
454
455	self.parent.set_file_location(os.path.dirname(path))
456	try:
457	#Load data
458	self.ext = os.path.splitext(path)[-1]
459	if self.ext in self.omfreader.ext:
460	loader = self.omfreader
461	elif self.ext in self.sldreader.ext:
462	loader = self.sldreader
463	elif self.ext in self.pdbreader.ext:
464	loader = self.pdbreader
465	else:
466	loader = None
467	if self.reader is not None and self.reader.isrunning():
468	self.reader.stop()
469	self.browse_button.Enable(False)
470	self.browse_button.SetLabel("Loading...")
471	if self.parent.parent is not None:
472	wx.PostEvent(self.parent.parent,
473	StatusEvent(status="Loading...",
474	type="progress"))
475	self.reader = GenReader(path=path, loader=loader,
476	completefn=self.complete_loading,
477	updatefn=self.load_update)
478	self.reader.queue()
479	#self.load_update()
480	except:
481	self.ext = None
482	if self.parent.parent is None:
483	return
484	msg = "Generic SANS Calculator: %s" % (sys.exc_value)
485	wx.PostEvent(self.parent.parent,
486	StatusEvent(status=msg, type='stop'))
487	self.SetFocus()
488	return
489
490	def load_update(self):
491	"""
492	print update on the status bar
493	"""
494	if self.parent.parent is None:
495	return
496	if self.reader.isrunning():
497	type = "progress"
498	else:
499	type = "stop"
500	wx.PostEvent(self.parent.parent, StatusEvent(status="",
501	type=type))
502
503	def complete_loading(self, data=None, filename=''):
504	"""
505	Complete the loading
506	"""
507	#compute the slit size
508	self.browse_button.Enable(True)
509	self.browse_button.SetLabel('Load')
510	try:
511	is_pdbdata = False
512	filename = data.filename
513	self.data_name_tcl.SetValue(str(filename))
514	self.file_name = filename.split('.')[0]
515	if self.ext in self.omfreader.ext:
516	gen = sans_gen.OMF2SLD()
517	gen.set_data(data)
518	#omf_data = data
519	self.sld_data = gen.get_magsld()
520	elif self.ext in self.sldreader.ext:
521	self.sld_data = data
522	elif self.ext in self.pdbreader.ext:
523	self.sld_data = data
524	is_pdbdata = True
525	#omf_data = None
526	else:
527	raise
528	self._set_sld_data_helper(True)
529	except:
530	if self.parent.parent is None:
531	raise
532	msg = "Loading Error: This file format is not supported "
533	msg += "for GenSANS."
534	wx.PostEvent(self.parent.parent,
535	StatusEvent(status=msg, type='stop', info='Error'))
536	self.SetFocus()
537	return
538	if self.parent.parent is None:
539	return
540
541	msg = "Load Complete"
542	wx.PostEvent(self.parent.parent, StatusEvent(status=msg, type='stop'))
543	self.SetFocus()
544
545	def _set_sld_data_helper(self, is_draw=False):
546	"""
547	Set sld data helper
548	"""
549	self.model.set_sld_data(self.sld_data)
550	self.draw_button.Enable(self.sld_data!=None)
551	wx.CallAfter(self.parent.set_sld_data, self.sld_data)
552	if is_draw:
553	wx.CallAfter(self.sld_draw, False)
554
555	def _onparamEnter(self, event):
556	"""
557	On param enter
558	"""
559	try:
560	item = event.GetEventObject()
561	self._check_value()
562	item.Refresh()
563	except:
564	pass
565
566	def sld_draw(self, has_arrow=False, event=None):
567	"""
568	Draw 3D sld profile
569	"""
570	color_dic = {'H':'blue', 'D':'purple', 'N': 'orange',
571	'O':'red', 'C':'green', 'Other':'k'}
572	graph_title = self.file_name
573	graph_title += " 3D SLD Profile "
574
575	flag = self.parent.check_omfpanel_inputs()
576	if not flag:
577	infor = 'Error'
578	msg = 'Error: Wrong inputs in the SLD info panel.'
579	# inform msg to wx
580	wx.PostEvent(self.parent.parent,
581	StatusEvent(status=msg, info=infor))
582	self.SetFocus()
583	return
584
585	self.sld_data = self.parent.get_sld_from_omf()
586	output = self.sld_data
587	#frame_size = wx.Size(470, 470)
588	self.plot_frame = PlotFrame(self, -1, 'testView')
589	frame = self.plot_frame
590	frame.Show(False)
591	add_icon(self.parent, frame)
592	panel = frame.plotpanel
593
594	try:
595	# mpl >= 1.0.0
596	ax = panel.figure.gca(projection='3d')
597	except:
598	# mpl < 1.0.0
599	try:
600	from mpl_toolkits.mplot3d import Axes3D
601	ax = Axes3D(panel.figure)
602	except:
603	logging.error("PlotPanel could not import Axes3D")
604	raise
605
606	marker = ','
607	m_size = 2
608	if output.pix_type != 'pixel':
609	marker = 'o'
610	m_size = 2
611	pos_x = output.pos_x
612	pos_y = output.pos_y
613	pos_z = output.pos_z
614	sld_mx = output.sld_mx
615	sld_my = output.sld_my
616	sld_mz = output.sld_mz
617
618	sld_tot = (numpy.fabs(sld_mx) + numpy.fabs(sld_my) +
619	numpy.fabs(sld_mz) + numpy.fabs(output.sld_n))
620	is_nonzero = sld_tot > 0.0
621	is_zero = sld_tot == 0.0
622
623	# Plot null points
624	if is_zero.any():
625	ax.plot(pos_x[is_zero], pos_z[is_zero], pos_y[is_zero], marker,
626	c="y", alpha=0.5, markeredgecolor='y',
627	markersize=m_size)
628	pos_x = pos_x[is_nonzero]
629	pos_y = pos_y[is_nonzero]
630	pos_z = pos_z[is_nonzero]
631	sld_mx = sld_mx[is_nonzero]
632	sld_my = sld_my[is_nonzero]
633	sld_mz = sld_mz[is_nonzero]
634
635	# Plot selective points in color
636	for key in color_dic.keys():
637	chosen_color = output.pix_symbol == key
638	other_color = numpy.ones(len(output.pix_symbol), dtype='bool')
639	if chosen_color.any():
640	other_color = other_color & (chosen_color != True)
641	color = color_dic[key]
642	ax.plot(pos_x[chosen_color], pos_z[chosen_color],
643	pos_y[chosen_color], marker, c=color, alpha=0.5,
644	markeredgecolor=color, markersize=m_size, label=key)
645	# Plot All others
646	if other_color.any():
647	ax.plot(pos_x[other_color], pos_z[other_color], pos_y[other_color],
648	marker, c="k", alpha=0.5, markeredgecolor="k",
649	markersize=m_size, label="Other")
650
651	if has_arrow and len(pos_x) > 0:
652	graph_title += "w/ Arrows"
653	def _draw_arrow(input=None, elapsed=0.1):
654	"""
655	draw w/arrow
656	"""
657	max_mx = max(numpy.fabs(sld_mx))
658	max_my = max(numpy.fabs(sld_my))
659	max_mz = max(numpy.fabs(sld_mz))
660	max_m = max(max_mx, max_my, max_mz)
661	try:
662	max_step = max(output.xstepsize, output.ystepsize,
663	output.zstepsize)
664	except:
665	max_step = 0
666	if max_step <= 0:
667	max_step = 5
668	try:
669	if max_m != 0:
670	unit_x2 = sld_mx / max_m
671	unit_y2 = sld_my / max_m
672	unit_z2 = sld_mz / max_m
673	# 0.8 is for avoiding the color becomes white=(1,1,1))
674	color_x = numpy.fabs(unit_x2 * 0.8)
675	color_y = numpy.fabs(unit_y2 * 0.8)
676	color_z = numpy.fabs(unit_z2 * 0.8)
677	x2 = pos_x + unit_x2 * max_step
678	y2 = pos_y + unit_y2 * max_step
679	z2 = pos_z + unit_z2 * max_step
680	x_arrow = numpy.column_stack((pos_x, x2))
681	y_arrow = numpy.column_stack((pos_y, y2))
682	z_arrow = numpy.column_stack((pos_z, z2))
683	colors = numpy.column_stack((color_x,
684	color_y,
685	color_z))
686
687	arrows = Arrow3D(panel, x_arrow, z_arrow, y_arrow,
688	colors,
689	mutation_scale=10, lw=1,
690	arrowstyle="->", alpha = 0.5)
691	ax.add_artist(arrows)
692	except:
693	pass
694	msg = "Arrow Drawing completed.\n"
695	status_type = 'stop'
696	self._status_info(msg, status_type)
697	msg = "Arrow Drawing is in progress..."
698
699	status_type = 'progress'
700	self._status_info(msg, status_type)
701	draw_out = CalcGen(input=ax,
702	completefn=_draw_arrow, updatefn=self._update)
703	draw_out.queue()
704
705	panel.subplot.figure.subplots_adjust(left=0.05, right=0.95,
706	bottom=0.05, top=0.96)
707	# Use y, z axes (in mpl 3d) as z, y axes
708	# that consistent with SANS coords.
709	ax.set_xlabel('x ($\A%s$)'% output.pos_unit)
710	ax.set_ylabel('z ($\A%s$)'% output.pos_unit)
711	ax.set_zlabel('y ($\A%s$)'% output.pos_unit)
712	if output.pix_type == 'atom':
713	ax.legend(loc='upper left', prop={'size':10})
714	num_graph = str(self.graph_num)
715	frame.SetTitle('Graph %s: %s'% (num_graph, graph_title))
716	wx.CallAfter(frame.Show, True)
717	self.graph_num += 1
718
719	def set_input_params(self):
720	"""
721	Set model parameters
722	"""
723	for list in self.parameters:
724	param_name = list[0].GetLabelText()
725	param_value = float(list[1].GetValue())
726	self.model.setParam(param_name, param_value)
727
728	def on_compute(self, event):
729	"""
730	Compute I(qx, qy)
731	"""
732	flag = self.parent.check_omfpanel_inputs()
733	if not flag and self.parent.parent != None:
734	infor = 'Error'
735	msg = 'Error: Wrong inputs in the SLD info panel.'
736	# inform msg to wx
737	wx.PostEvent(self.parent.parent,
738	StatusEvent(status=msg, info=infor))
739	self.SetFocus()
740	return
741	self.sld_data = self.parent.get_sld_from_omf()
742	if self.sld_data == None:
743	if self.parent.parent != None:
744	infor = 'Error'
745	msg = 'Error: No data has been selected.'
746	# inform msg to wx
747	wx.PostEvent(self.parent.parent,
748	StatusEvent(status=msg, info=infor))
749	self.SetFocus()
750	return
751	flag = self._check_value()
752	if not flag:
753	_set_error(self, None, True)
754	return
755	try:
756	#vol = self.parent.get_pix_volumes()
757	#self.model.set_pixel_volumes(vol)
758	self.model.set_sld_data(self.sld_data)
759	self.set_input_params()
760	self._create_default_2d_data()
761	i_out = numpy.zeros(len(self.data.data))
762	msg = "Computation is in progress..."
763	status_type = 'progress'
764	self._status_info(msg, status_type)
765
766	cal_out = CalcGen(input=[self.data.qx_data,
767	self.data.qy_data, i_out],
768	completefn=self.complete,
769	updatefn=self._update)
770	cal_out.queue()
771
772	except:
773	msg = "%s."% sys.exc_value
774	status_type = 'stop'
775	self._status_info(msg, status_type)
776	wx.PostEvent(self.parent.parent,
777	StatusEvent(status=msg, info='Error'))
778	self.SetFocus()
779
780	def _check_value(self):
781	"""
782	Check input values if float
783	"""
784	flag = True
785	self.npt_ctl.SetBackgroundColour("white")
786	self.qmax_ctl.SetBackgroundColour("white")
787	try:
788	npt_val = float(self.npt_ctl.GetValue())
789	if npt_val < 2 or npt_val > 1000:
790	raise
791	self.npt_ctl.SetValue(str(int(npt_val)))
792	self.set_est_time()
793	except:
794	flag = _set_error(self, self.npt_ctl)
795	try:
796	qmax_val = float(self.qmax_ctl.GetValue())
797	if qmax_val <= 0 or qmax_val > 1000:
798	raise
799	except:
800	flag = _set_error(self, self.qmax_ctl)
801	for list in self.parameters:
802	list[1].SetBackgroundColour("white")
803	param_name = list[0].GetLabelText()
804	try:
805	param_val = float(list[1].GetValue())
806	if param_name.count('frac') > 0:
807	if param_val < 0 or param_val > 1:
808	raise
809	except:
810	flag = _set_error(self, list[1])
811	return flag
812
813	def _status_info(self, msg = '', type = "update"):
814	"""
815	Status msg
816	"""
817	if type == "stop":
818	label = "Compute"
819	able = True
820	else:
821	label = "Wait..."
822	able = False
823	self.bt_compute.Enable(able)
824	self.bt_compute.SetLabel(label)
825	self.bt_compute.SetToolTipString(label)
826	if self.parent.parent != None:
827	wx.PostEvent(self.parent.parent,
828	StatusEvent(status = msg, type = type ))
829
830	def _update(self, time=None):
831	"""
832	Update the output of plotting model
833	"""
834	if self.parent.parent != None:
835	msg = "Computation/drawing is in progress..."
836	wx.PostEvent(self.parent.parent,
837	StatusEvent(status=msg, type="update"))
838
839	def complete(self, input, elapsed=None):
840	"""
841	Gen compute complete function
842	:Param input: input list [qx_data, qy_data, i_out]
843	"""
844	out = self.model.runXY(input)
845	self._draw2D(out)
846	msg = "Gen computation completed.\n"
847	status_type = 'stop'
848	self._status_info(msg, status_type)
849
850	def _create_default_2d_data(self):
851	"""
852	Create 2D data by default
853	Only when the page is on theory mode.
854	:warning: This data is never plotted.
855	"""
856	self.qmax_x = float(self.qmax_ctl.GetValue())
857	self.npts_x = int(float(self.npt_ctl.GetValue()))
858	self.data = Data2D()
859	qmax = self.qmax_x #/ numpy.sqrt(2)
860	self.data.xaxis('\\rm{Q_{x}}', '\AA^{-1}')
861	self.data.yaxis('\\rm{Q_{y}}', '\AA^{-1}')
862	self.data.is_data = False
863	self.data.id = str(self.uid) + " GenData"
864	self.data.group_id = str(self.uid) + " Model2D"
865	## Default values
866	self.data.detector.append(Detector())
867	index = len(self.data.detector) - 1
868	self.data.detector[index].distance = 8000 # mm
869	self.data.source.wavelength = 6 # A
870	self.data.detector[index].pixel_size.x = 5 # mm
871	self.data.detector[index].pixel_size.y = 5 # mm
872	self.data.detector[index].beam_center.x = qmax
873	self.data.detector[index].beam_center.y = qmax
874	xmax = qmax
875	xmin = -qmax
876	ymax = qmax
877	ymin = -qmax
878	qstep = self.npts_x
879
880	x = numpy.linspace(start=xmin, stop=xmax, num=qstep, endpoint=True)
881	y = numpy.linspace(start=ymin, stop=ymax, num=qstep, endpoint=True)
882	## use data info instead
883	new_x = numpy.tile(x, (len(y), 1))
884	new_y = numpy.tile(y, (len(x), 1))
885	new_y = new_y.swapaxes(0, 1)
886	# all data reuire now in 1d array
887	qx_data = new_x.flatten()
888	qy_data = new_y.flatten()
889	q_data = numpy.sqrt(qx_data * qx_data + qy_data * qy_data)
890	# set all True (standing for unmasked) as default
891	mask = numpy.ones(len(qx_data), dtype=bool)
892	# store x and y bin centers in q space
893	x_bins = x
894	y_bins = y
895	self.data.source = Source()
896	self.data.data = numpy.ones(len(mask))
897	self.data.err_data = numpy.ones(len(mask))
898	self.data.qx_data = qx_data
899	self.data.qy_data = qy_data
900	self.data.q_data = q_data
901	self.data.mask = mask
902	self.data.x_bins = x_bins
903	self.data.y_bins = y_bins
904	# max and min taking account of the bin sizes
905	self.data.xmin = xmin
906	self.data.xmax = xmax
907	self.data.ymin = ymin
908	self.data.ymax = ymax
909
910	def _draw2D(self, image):
911	"""
912	Complete get the result of modelthread and create model 2D
913	that can be plot.
914	"""
915	page_id = self.id
916	data = self.data
917
918	model = self.model
919	qmin = 0.0
920	state = None
921
922	numpy.nan_to_num(image)
923	new_plot = Data2D(image=image, err_image=data.err_data)
924	new_plot.name = model.name + '2d'
925	new_plot.title = "Generic model 2D "
926	new_plot.id = str(page_id) + ': ' + self.file_name \
927	+ ' #%s'% str(self.graph_num)
928	new_plot.group_id = str(page_id) + " Model2D"
929	new_plot.detector = data.detector
930	new_plot.source = data.source
931	new_plot.is_data = False
932	new_plot.qx_data = data.qx_data
933	new_plot.qy_data = data.qy_data
934	new_plot.q_data = data.q_data
935	new_plot.mask = data.mask
936	## plot boundaries
937	new_plot.ymin = data.ymin
938	new_plot.ymax = data.ymax
939	new_plot.xmin = data.xmin
940	new_plot.xmax = data.xmax
941	title = data.title
942	_yaxis, _yunit = data.get_yaxis()
943	_xaxis, _xunit = data.get_xaxis()
944	new_plot.xaxis(str(_xaxis), str(_xunit))
945	new_plot.yaxis(str(_yaxis), str(_yunit))
946
947	new_plot.is_data = False
948	if data.is_data:
949	data_name = str(data.name)
950	else:
951	data_name = str(model.__class__.__name__) + '2d'
952
953	if len(title) > 1:
954	new_plot.title = "Gen Theory for %s "% model.name + data_name
955	new_plot.name = new_plot.id
956	new_plot.label = new_plot.id
957	#theory_data = deepcopy(new_plot)
958	if self.parent.parent != None:
959	self.parent.parent.update_theory(data_id=data.id,
960	theory=new_plot,
961	state=state)
962	title = new_plot.title
963	num_graph = str(self.graph_num)
964	wx.CallAfter(self.parent.draw_graph, new_plot,
965	title="Graph %s: "% num_graph + new_plot.id )
966	self.graph_num += 1
967
968	def set_scale2d(self, scale):
969	"""
970	Set SLD plot scale
971	"""
972	self.scale2d = None
973
974	def on_panel_close(self, event):
975	"""
976	On Close SLD panel
977	"""
978	#Not implemented
979
980	class OmfPanel(ScrolledPanel, PanelBase):
981	"""
982	Provides the sas gen calculator GUI.
983	"""
984	## Internal nickname for the window, used by the AUI manager
985	window_name = "SLD Pixel Info"
986	## Name to appear on the window title bar
987	window_caption = "SLD Pixel Info "
988	## Flag to tell the AUI manager to put this panel in the center pane
989	CENTER_PANE = False
990
991	def __init__(self, parent, args, *kwds):
992	ScrolledPanel.__init__(self, parent, style=wx.RAISED_BORDER,
993	args, *kwds)
994	PanelBase.__init__(self)
995	#Font size
996	self.SetWindowVariant(variant=FONT_VARIANT)
997	self.SetupScrolling()
998	# Object that receive status event
999	self.parent = parent
1000	self.sld_data = sans_gen.MagSLD([0], [0], [0])
1001	self.sld_ctl = None
1002	self.default_shape = 'rectangular'
1003	self._do_layout()
1004
1005	def set_slddata(self, slddata):
1006	"""
1007	Set sld data related items
1008	"""
1009	self.sld_data = slddata
1010	self._set_slddata_ctr_val(slddata)
1011	# Make sure that self._set_slddata_ctr_val() is finished
1012	wx.CallAfter(self._set_omfdata_ctr, slddata)
1013
1014	def get_sld_val(self):
1015	"""
1016	Set sld_n of slddata on sld input
1017	"""
1018	sld_sets = {}
1019	if not self.sld_data.is_data:
1020	self._get_other_val()
1021	for list in self.slds:
1022	if list[1].IsEnabled():
1023	list[1].SetBackgroundColour("white")
1024	list[1].Refresh()
1025	try:
1026	val = float(list[1].GetValue())
1027	sld_sets[list[0]] = val
1028	except:
1029	flag = _set_error(self, list[1])
1030	if not flag:
1031	return self.sld_data
1032	else:
1033	sld_sets[list[0]]= None
1034	for key in sld_sets.keys():
1035	key_low = key.lower()
1036	if key_low.count('mx') > 0:
1037	if sld_sets[key] == None:
1038	sld_sets[key] = self.sld_data.sld_mx
1039	mx = sld_sets[key]
1040	elif key_low.count('my') > 0:
1041	if sld_sets[key] == None:
1042	sld_sets[key] = self.sld_data.sld_my
1043	my = sld_sets[key]
1044	elif key_low.count('mz') > 0:
1045	if sld_sets[key] == None:
1046	sld_sets[key] = self.sld_data.sld_mz
1047	mz = sld_sets[key]
1048	else:
1049	if sld_sets[key] != None:
1050	self.sld_data.set_sldn(sld_sets[key])
1051	self.sld_data.set_sldms(mx, my, mz)
1052	self._set_slddata_ctr_val(self.sld_data)
1053
1054	return self.sld_data
1055
1056	def get_pix_volumes(self):
1057	"""
1058	Get the pixel volume
1059	"""
1060	vol = self.sld_data.vol_pix
1061
1062	return vol
1063
1064	def _get_other_val(self):
1065	"""
1066	"""
1067	omfdata = sans_gen.OMFData()
1068	sets = {}
1069	try:
1070	for lst in self.stepsize:
1071	if lst[1].IsEnabled():
1072	val = float(lst[1].GetValue())
1073	sets[lst[0]] = val
1074	else:
1075	sets[lst[0]] = None
1076	return
1077	for lst in self.nodes:
1078	if lst[1].IsEnabled():
1079	val = float(lst[1].GetValue())
1080	sets[lst[0]] = val
1081	else:
1082	sets[lst[0]] = None
1083	return
1084
1085	for key in sets.keys():
1086	exec "omfdata.%s = sets['%s']"% (key, key)
1087
1088	omf2sld = sans_gen.OMF2SLD()
1089	omf2sld.set_data(omfdata, self.default_shape)
1090	self.sld_data = omf2sld.output
1091	self.sld_data.is_data = False
1092	self.sld_data.filename = "Default SLD Profile"
1093	except:
1094	msg = "OMF Panel: %s"% sys.exc_value
1095	infor = 'Error'
1096	#logging.error(msg)
1097	if self.parent.parent != None:
1098	# inform msg to wx
1099	wx.PostEvent(self.parent.parent,
1100	StatusEvent(status=msg, info=infor))
1101	self.SetFocus()
1102
1103	def _set_slddata_ctr_val(self, slddata):
1104	"""
1105	Set slddata crl
1106	"""
1107	try:
1108	val = str(len(slddata.sld_n))
1109	except:
1110	val = 'Unknown'
1111	self.npix_ctl.SetValue(val)
1112
1113	def _set_omfdata_ctr(self, omfdata):
1114	"""
1115	Set the textctr box values
1116	"""
1117
1118	if omfdata == None:
1119	self._set_none_text()
1120	return
1121	nodes_list = self._get_nodes_key_list(omfdata)
1122	step_list = self._get_step_key_list(omfdata)
1123	for ctr_list in self.nodes:
1124	for key in nodes_list.keys():
1125	if ctr_list[0] == key:
1126	ctr_list[1].SetValue(format_number(nodes_list[key], True))
1127	ctr_list[1].Enable(not omfdata.is_data)
1128	break
1129	for ctr_list in self.stepsize:
1130	for key in step_list.keys():
1131	if ctr_list[0] == key:
1132	ctr_list[1].SetValue(format_number(step_list[key], True))
1133	ctr_list[1].Enable(not omfdata.is_data)
1134	break
1135
1136	def _set_none_text(self):
1137	"""
1138	Set Unknown in textctrls
1139	"""
1140	val = 'Unknown'
1141	for ctr_list in self.nodes:
1142	ctr_list[1].SetValue(val)
1143	for ctr_list in self.stepsize:
1144	ctr_list[1].SetValue(val)
1145
1146	def _define_structure(self):
1147	"""
1148	Define the main sizers building to build this application.
1149	"""
1150	self.main_sizer = wx.BoxSizer(wx.VERTICAL)
1151
1152	self.npixels_sizer = wx.BoxSizer(wx.HORIZONTAL)
1153	self.box_sld = wx.StaticBox(self, -1,
1154	str("Scattering Length (Density)"))
1155	self.box_node = wx.StaticBox(self, -1, str("Nodes"))
1156	self.boxsizer_sld = wx.StaticBoxSizer(self.box_sld, wx.VERTICAL)
1157	self.box_stepsize = wx.StaticBox(self, -1, str("Step Size"))
1158	self.boxsizer_node = wx.StaticBoxSizer(self.box_node, wx.VERTICAL)
1159	self.boxsizer_stepsize = wx.StaticBoxSizer(self.box_stepsize,
1160	wx.VERTICAL)
1161	self.sld_sizer = wx.BoxSizer(wx.HORIZONTAL)
1162	self.node_sizer = wx.BoxSizer(wx.HORIZONTAL)
1163	self.step_sizer = wx.BoxSizer(wx.HORIZONTAL)
1164	self.hint_sizer = wx.BoxSizer(wx.HORIZONTAL)
1165	self.button_sizer = wx.BoxSizer(wx.HORIZONTAL)
1166
1167	def _layout_npix(self):
1168	"""
1169	Build No of pixels sizer
1170	"""
1171	num_pix_text = wx.StaticText(self, -1, "No. of Pixels: ")
1172	self.npix_ctl = OutputTextCtrl(self, -1, size=(_BOX_WIDTH, 20),
1173	style=wx.TE_PROCESS_ENTER)
1174	self._set_slddata_ctr_val(self.sld_data)
1175	self._set_omfdata_ctr(self.sld_data)
1176	self.npixels_sizer.AddMany([(num_pix_text, 0,
1177	wx.EXPAND\|wx.LEFT\|wx.TOP, 5),
1178	(self.npix_ctl, 0,
1179	wx.EXPAND\|wx.TOP, 5)])
1180
1181	def _layout_slds(self):
1182	"""
1183	Build nuclear sld sizer
1184	"""
1185	self.slds = []
1186	omfdata = self.sld_data
1187	if omfdata == None:
1188	raise
1189	sld_key_list = self._get_slds_key_list(omfdata)
1190	# Dic is not sorted
1191	key_list = [key for key in sld_key_list.keys()]
1192	# Sort here
1193	key_list.sort()
1194	is_data = self.sld_data.is_data
1195	sizer = wx.GridBagSizer(2, 3)
1196	ix = 0
1197	iy = -1
1198	for key in key_list:
1199	value = sld_key_list[key]
1200	iy += 1
1201	ix = 0
1202	name = wx.StaticText(self, -1, key)
1203	sizer.Add(name, (iy, ix), (1, 1), \
1204	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
1205	## add parameter value
1206	ix += 1
1207	ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20),
1208	style=wx.TE_PROCESS_ENTER)
1209	ctl.SetValue(format_number(value, True))
1210	ctl.Enable(not is_data)
1211	sizer.Add(ctl, (iy, ix), (1, 1), wx.EXPAND)
1212	## add unit
1213	ix += 1
1214	s_unit = '[' + omfdata.sld_unit + ']'
1215	unit = wx.StaticText(self, -1, s_unit)
1216	sizer.Add(unit, (iy, ix), (1, 1), \
1217	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
1218	self.slds.append([key, ctl, unit])
1219	self.sld_sizer.Add(sizer, 0, wx.LEFT, 10)
1220
1221	def _layout_nodes(self):
1222	"""
1223	Fill the sizer containing data's name
1224	"""
1225	self.nodes = []
1226	omfdata = self.sld_data
1227	if omfdata == None:
1228	raise
1229	key_list = self._get_nodes_key_list(omfdata)
1230	is_data = self.sld_data.is_data
1231	sizer = wx.GridBagSizer(2, 3)
1232	ix = 0
1233	iy = -1
1234	for key, value in key_list.iteritems():
1235	iy += 1
1236	ix = 0
1237	name = wx.StaticText(self, -1, key)
1238	sizer.Add(name, (iy, ix), (1, 1), \
1239	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
1240	## add parameter value
1241	ix += 1
1242	ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20),
1243	style=wx.TE_PROCESS_ENTER)
1244	ctl.Bind(wx.EVT_TEXT, self._onparamEnter )
1245	ctl.SetValue(format_number(value, True))
1246	ctl.Enable(not is_data)
1247	sizer.Add(ctl, (iy, ix), (1, 1), wx.EXPAND)
1248	## add unit
1249	ix += 1
1250	unit = wx.StaticText(self, -1, '')
1251	sizer.Add(unit, (iy, ix), (1, 1), \
1252	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
1253	self.nodes.append([key, ctl, unit])
1254	self.node_sizer.Add(sizer, 0, wx.LEFT, 10)
1255
1256	def _layout_stepsize(self):
1257	"""
1258	Fill the sizer containing slit size information
1259	"""
1260	self.stepsize = []
1261	omfdata = self.sld_data
1262	if omfdata == None:
1263	raise
1264	key_list = self._get_step_key_list(omfdata)
1265	is_data = self.sld_data.is_data
1266	sizer = wx.GridBagSizer(2, 3)
1267	ix = 0
1268	iy = -1
1269	#key_list.sort()
1270	for key, value in key_list.iteritems():
1271	iy += 1
1272	ix = 0
1273	name = wx.StaticText(self, -1, key)
1274	sizer.Add(name, (iy, ix), (1, 1), \
1275	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
1276	## add parameter value
1277	ix += 1
1278	ctl = InputTextCtrl(self, -1, size=(_BOX_WIDTH, 20),
1279	style=wx.TE_PROCESS_ENTER)
1280	ctl.Bind(wx.EVT_TEXT, self._onstepsize )
1281	ctl.SetValue(format_number(value, True))
1282	ctl.Enable(not is_data)
1283	sizer.Add(ctl, (iy, ix), (1, 1), wx.EXPAND)
1284	## add unit
1285	ix += 1
1286	p_unit = '[' + omfdata.pos_unit + ']'
1287	unit = wx.StaticText(self, -1, p_unit)
1288	sizer.Add(unit, (iy, ix), (1, 1), \
1289	wx.EXPAND \| wx.ADJUST_MINSIZE, 0)
1290	self.stepsize.append([key, ctl, unit])
1291	self.step_sizer.Add(sizer, 0, wx.LEFT, 10)
1292
1293	def _layout_hint(self):
1294	"""
1295	Fill the sizer containing hint
1296	"""
1297	hint_msg = "Load an omf or 3d sld profile data file."
1298	self.hint_txt = wx.StaticText(self, -1, hint_msg)
1299	self.hint_sizer.AddMany([(self.hint_txt, 0, wx.LEFT, 15)])
1300
1301	def _layout_button(self):
1302	"""
1303	Do the layout for the button widgets
1304	"""
1305	self.bt_draw = wx.Button(self, wx.NewId(),'Draw Points')
1306	self.bt_draw.Bind(wx.EVT_BUTTON, self.on_sld_draw)
1307	self.bt_draw.SetToolTipString("Draw a scatter plot for sld profile.")
1308	self.bt_save = wx.Button(self, wx.NewId(),'Save SLD Data')
1309	self.bt_save.Bind(wx.EVT_BUTTON, self.on_save)
1310	self.bt_save.Enable(False)
1311	self.bt_save.SetToolTipString("Save SLD data.")
1312	self.button_sizer.AddMany([(self.bt_draw, 0, wx.LEFT, 10),
1313	(self.bt_save, 0, wx.LEFT, 10)])
1314
1315	def _do_layout(self):
1316	"""
1317	Draw window content
1318	"""
1319	self._define_structure()
1320	self._layout_nodes()
1321	self._layout_stepsize()
1322	self._layout_npix()
1323	self._layout_slds()
1324	#self._layout_hint()
1325	self._layout_button()
1326	self.boxsizer_node.AddMany([(self.node_sizer, 0,
1327	wx.EXPAND\|wx.TOP, 5),
1328	(self.hint_sizer, 0,
1329	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5)])
1330	self.boxsizer_stepsize.AddMany([(self.step_sizer, 0,
1331	wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5),])
1332	self.boxsizer_sld.AddMany([(self.sld_sizer, 0,
1333	wx.EXPAND\|wx.BOTTOM, 5),])
1334	self.main_sizer.AddMany([(self.npixels_sizer, 0, wx.EXPAND\|wx.ALL, 10),
1335	(self.boxsizer_sld, 0, wx.EXPAND\|wx.ALL, 10),
1336	(self.boxsizer_node, 0, wx.EXPAND\|wx.ALL, 10),
1337	(self.boxsizer_stepsize, 0, wx.EXPAND\|wx.ALL, 10),
1338	(self.button_sizer, 0, wx.EXPAND\|wx.TOP\|wx.BOTTOM, 5)])
1339	self.SetSizer(self.main_sizer)
1340	self.SetAutoLayout(True)
1341
1342	def _get_nodes_key_list(self, data):
1343	"""
1344	Return nodes key list
1345
1346	:Param data: OMFData
1347	"""
1348	key_list = {'xnodes' : data.xnodes,
1349	'ynodes' : data.ynodes,
1350	'znodes' : data.znodes}
1351	return key_list
1352
1353	def _get_slds_key_list(self, data):
1354	"""
1355	Return nodes key list
1356
1357	:Param data: OMFData
1358	"""
1359	key_list = {'Nucl.' : data.sld_n,
1360	'Mx' : data.sld_mx,
1361	'My' : data.sld_my,
1362	'Mz' : data.sld_mz}
1363	return key_list
1364
1365	def _get_step_key_list(self, data):
1366	"""
1367	Return step key list
1368
1369	:Param data: OMFData
1370	"""
1371	key_list = {'xstepsize' : data.xstepsize,
1372	'ystepsize' : data.ystepsize,
1373	'zstepsize' : data.zstepsize}
1374	return key_list
1375
1376	def set_sld_ctr(self, sld_data):
1377	"""
1378	Set sld textctrls
1379	"""
1380	if sld_data == None:
1381	for ctr_list in self.slds:
1382	ctr_list[1].Enable(False)
1383	#break
1384	return
1385
1386	self.sld_data = sld_data
1387	sld_list = self._get_slds_key_list(sld_data)
1388	for ctr_list in self.slds:
1389	for key in sld_list.keys():
1390	if ctr_list[0] == key:
1391	min_val = numpy.min(sld_list[key])
1392	max_val = numpy.max(sld_list[key])
1393	mean_val = numpy.mean(sld_list[key])
1394	enable = (min_val == max_val) and \
1395	sld_data.pix_type == 'pixel'
1396	ctr_list[1].SetValue(format_number(mean_val, True))
1397	ctr_list[1].Enable(enable)
1398	#ctr_list[2].SetLabel("[" + sld_data.sld_unit + "]")
1399	break
1400
1401	def on_sld_draw(self, event):
1402	"""
1403	Draw sld profile as scattered plot
1404	"""
1405	self.parent.sld_draw()
1406
1407	def on_save(self, event):
1408	"""
1409	Close the window containing this panel
1410	"""
1411	flag = True
1412	flag = self.check_inputs()
1413	if not flag:
1414	return
1415	self.sld_data = self.get_sld_val()
1416	self.parent.set_main_panel_sld_data(self.sld_data)
1417
1418	reader = sans_gen.SLDReader()
1419	extension = '*.sld'
1420	path = None
1421	data= None
1422	location = self.parent.get_path()
1423	dlg = wx.FileDialog(self, "Save sld file",
1424	location, "sld_file",
1425	extension,
1426	wx.SAVE)
1427	if dlg.ShowModal() == wx.ID_OK:
1428	path = dlg.GetPath()
1429	self.parent.set_file_location(os.path.dirname(path))
1430	else:
1431	return None
1432	dlg.Destroy()
1433	try:
1434	if path is None:
1435	return
1436
1437	data = self.parent.get_sld_data()
1438	fName = os.path.splitext(path)[0] + '.' + extension.split('.')[-1]
1439	if data != None:
1440	try:
1441	reader.write(fName, data)
1442	except:
1443	raise
1444	else:
1445	msg = "%s cannot write %s\n" % ('Generic Scattering', str(path))
1446	infor = 'Error'
1447	#logging.error(msg)
1448	if self.parent.parent != None:
1449	# inform msg to wx
1450	wx.PostEvent(self.parent.parent,
1451	StatusEvent(status=msg, info=infor))
1452	self.SetFocus()
1453	return
1454	except:
1455	msg = "Error occurred while saving. "
1456	infor = 'Error'
1457	if self.parent.parent != None:
1458	# inform msg to wx
1459	wx.PostEvent(self.parent.parent,
1460	StatusEvent(status=msg, info=infor))
1461	self.SetFocus()
1462
1463	def _onparamEnter(self, event):
1464	"""
1465	"""
1466	flag = True
1467	if event != None:
1468	event.Skip()
1469	ctl = event.GetEventObject()
1470	ctl.SetBackgroundColour("white")
1471	#_set_error(self, ctl)
1472	try:
1473	float(ctl.GetValue())
1474	except:
1475	flag = _set_error(self, ctl)
1476	if flag:
1477	npts = 1
1478	for item in self.nodes:
1479	n_val = float(item[1].GetValue())
1480	if n_val <= 0:
1481	item[1].SetBackgroundColour("pink")
1482	npts = -1
1483	break
1484	if numpy.isfinite(n_val):
1485	npts *= int(n_val)
1486	if npts > 0:
1487	nop = self.set_npts_from_slddata()
1488	if nop == None:
1489	nop = npts
1490	self.display_npts(nop)
1491	ctl.Refresh()
1492	return flag
1493
1494	def _onstepsize(self, event):
1495	"""
1496	On stepsize event
1497	"""
1498	flag = True
1499	if event != None:
1500	event.Skip()
1501	ctl = event.GetEventObject()
1502	ctl.SetBackgroundColour("white")
1503
1504	if flag and not self.sld_data.is_data:#ctl.IsEnabled():
1505	s_size = 1.0
1506	try:
1507	for item in self.stepsize:
1508	s_val = float(item[1].GetValue())
1509	if s_val <= 0:
1510	item[1].SetBackgroundColour("pink")
1511	ctl.Refresh()
1512	return
1513	if numpy.isfinite(s_val):
1514	s_size *= s_val
1515	self.sld_data.set_pixel_volumes(s_size)
1516	except:
1517	pass
1518	ctl.Refresh()
1519
1520
1521	def set_npts_from_slddata(self):
1522	"""
1523	Set total n. of points form the sld data
1524	"""
1525	try:
1526	sld_data = self.parent.get_sld_from_omf()
1527	#nop = (nop * numpy.pi) / 6
1528	nop = len(sld_data.sld_n)
1529	except:
1530	nop = None
1531	return nop
1532
1533	def display_npts(self, nop):
1534	"""
1535	Displays Npts ctrl
1536	"""
1537	try:
1538	self.npix_ctl.SetValue(str(nop))
1539	self.npix_ctl.Refresh()
1540	self.parent.set_etime()
1541	except:
1542	# On Init
1543	pass
1544
1545	def check_inputs(self):
1546	"""
1547	check if the inputs are valid
1548	"""
1549	flag = self._check_input_helper(self.slds)
1550	if flag:
1551	flag = self._check_input_helper(self.nodes)
1552	if flag:
1553	flag = self._check_input_helper(self.stepsize)
1554	return flag
1555
1556	def _check_input_helper(self, list):
1557	"""
1558	Check list values
1559	"""
1560	flag = True
1561	for item in list:
1562	item[1].SetBackgroundColour("white")
1563	item[1].Refresh()
1564	try:
1565	float(item[1].GetValue())
1566	except:
1567	flag = _set_error(self, item[1])
1568	break
1569	return flag
1570
1571	class SasGenWindow(wx.Frame):
1572	"""
1573	GEN SAS main window
1574	"""
1575	def __init__(self, parent=None, title="Generic Scattering Calculator",
1576	size=(PANEL_WIDTH * 1.3, PANEL_HEIGHT * 1.55), args, *kwds):
1577	"""
1578	Init
1579	"""
1580	kwds['size']= size
1581	kwds['title']= title
1582
1583	wx.Frame.__init__(self, parent, args, *kwds)
1584	self.parent = parent
1585	self.omfpanel = OmfPanel(parent=self)
1586	self.panel = SasGenPanel(parent=self)
1587	self.data = None
1588	self.omfdata = sans_gen.OMFData()
1589	self.sld_data = None
1590	self._default_save_location = os.getcwd()
1591
1592	self._mgr = aui.AuiManager(self)
1593	self._mgr.SetDockSizeConstraint(0.5, 0.5)
1594	self._plot_title = ''
1595	self.scale2d = 'log_{10}'
1596
1597	self._build_toolbar()
1598	self._build_menubar()
1599
1600	self.build_panels()
1601	self.Centre()
1602	self.Show(True)
1603
1604	def _build_toolbar(self):
1605	"""
1606	Build toolbar
1607	"""
1608	tsize = (20, 20)
1609	tb = self.CreateToolBar(wx.TB_HORIZONTAL \| wx.TB_FLAT)
1610	open_bmp = wx.ArtProvider.GetBitmap(wx.ART_FILE_OPEN, wx.ART_TOOLBAR,
1611	tsize)
1612	save_bmp = wx.ArtProvider.GetBitmap(wx.ART_FILE_SAVE_AS, wx.ART_TOOLBAR,
1613	tsize)
1614	close_bmp= wx.ArtProvider.GetBitmap(wx.ART_QUIT, wx.ART_TOOLBAR,
1615	tsize)
1616	help_bmp= wx.ArtProvider.GetBitmap(wx.ART_HELP, wx.ART_TOOLBAR,
1617	(17, 20))
1618
1619	id = wx.NewId()
1620	tb.AddLabelTool(id, "Open", open_bmp, shortHelp="Open",
1621	longHelp="Open sld/omf file")
1622	self.Bind(wx.EVT_TOOL, self.on_open_file, id=id)
1623
1624	id = wx.NewId()
1625	tb.AddSimpleTool(id, save_bmp, "Save", "Save as sld file")
1626	self.Bind(wx.EVT_TOOL, self.on_save_file, id=id)
1627
1628	tb.AddSeparator()
1629	id = wx.NewId()
1630	tb.AddSimpleTool(id, close_bmp, "Quit", "Quit")
1631	self.Bind(wx.EVT_TOOL, self.on_close, id=id)
1632
1633	tb.AddSeparator()
1634	id = wx.NewId()
1635	tb.AddSimpleTool(id, help_bmp, "Help", "Help")
1636	self.Bind(wx.EVT_TOOL, self.on_help, id=id)
1637
1638	tb.Realize()
1639
1640	def _build_menubar(self):
1641	"""
1642	Build menubar
1643	"""
1644	tsize = (13, 13)
1645	open_bmp = wx.ArtProvider.GetBitmap(wx.ART_FILE_OPEN, wx.ART_TOOLBAR,
1646	tsize)
1647	save_bmp = wx.ArtProvider.GetBitmap(wx.ART_FILE_SAVE_AS, wx.ART_TOOLBAR,
1648	tsize)
1649	quit_bmp= wx.ArtProvider.GetBitmap(wx.ART_QUIT, wx.ART_TOOLBAR,
1650	tsize)
1651	help_bmp= wx.ArtProvider.GetBitmap(wx.ART_HELP, wx.ART_TOOLBAR,
1652	(13, 15))
1653
1654	menu_bar = wx.MenuBar()
1655
1656	menu = wx.Menu()
1657	id = wx.NewId()
1658	item = wx.MenuItem(menu, id, "&Open sld/omf file")
1659	item.SetBitmap(open_bmp)
1660	menu.AppendItem(item)
1661	wx.EVT_MENU(self, id, self.on_open_file)
1662
1663	id = wx.NewId()
1664	item = wx.MenuItem(menu, id, "&Save as sld file")
1665	item.SetBitmap(save_bmp)
1666	menu.AppendItem(item)
1667	wx.EVT_MENU(self, id, self.on_save_file)
1668
1669	menu.AppendSeparator()
1670	id = wx.NewId()
1671	item = wx.MenuItem(menu, id, "&Quit")
1672	item.SetBitmap(quit_bmp)
1673	menu.AppendItem(item)
1674
1675	menu_bar.Append(menu, "&File")
1676	wx.EVT_MENU(self, id, self.on_close)
1677
1678	menu_help = wx.Menu()
1679	id = wx.NewId()
1680	item = wx.MenuItem(menu_help, id, "&Theory and GUI")
1681	item.SetBitmap(help_bmp)
1682	menu_help.AppendItem(item)
1683	wx.EVT_MENU(self, id, self.on_help)
1684
1685	menu_bar.Append(menu_help, "&Help")
1686
1687	self.SetMenuBar(menu_bar)
1688
1689	def build_panels(self):
1690	"""
1691	"""
1692
1693	self.set_sld_data(self.sld_data)
1694
1695	self._mgr.AddPane(self.panel, aui.AuiPaneInfo().
1696	Name(self.panel.window_name).
1697	CenterPane().
1698	# This is where we set the size of
1699	# the application window
1700	BestSize(wx.Size(PANEL_WIDTH,
1701	PANEL_HEIGHT)).
1702	Show())
1703	self._mgr.AddPane(self.omfpanel, aui.AuiPaneInfo().
1704	Name(self.omfpanel.window_name).
1705	Caption(self.omfpanel.window_caption).
1706	CloseButton(False).
1707	Right().
1708	Floatable(False).
1709	BestSize(wx.Size(PANEL_WIDTH/2.5, PANEL_HEIGHT)).
1710	Show())
1711	self._mgr.Update()
1712
1713	def get_sld_data(self):
1714	"""
1715	Return slddata
1716	"""
1717	return self.sld_data
1718
1719	def get_sld_from_omf(self):
1720	"""
1721	"""
1722	self.sld_data = self.omfpanel.get_sld_val()
1723	return self.sld_data
1724
1725	def set_sld_n(self, sld):
1726	"""
1727	"""
1728	self.panel.sld_data = sld
1729	self.panel.model.set_sld_data(sld)
1730
1731	def set_sld_data(self, data):
1732	"""
1733	Set omfdata
1734	"""
1735	if data == None:
1736	return
1737	self.sld_data = data
1738	enable = (not data==None)
1739	self._set_omfpanel_sld_data(self.sld_data)
1740	self.omfpanel.bt_save.Enable(enable)
1741	self.set_etime()
1742
1743	def set_omfpanel_npts(self):
1744	"""
1745	Set Npts in omf panel
1746	"""
1747	nop = self.omfpanel.set_npts_from_slddata()
1748	self.omfpanel.display_npts(nop)
1749
1750	def _set_omfpanel_sld_data(self, data):
1751	"""
1752	Set sld_data in omf panel
1753	"""
1754	self.omfpanel.set_slddata(data)
1755	self.omfpanel.set_sld_ctr(data)
1756
1757	def check_omfpanel_inputs(self):
1758	"""
1759	Check OMF panel inputs
1760	"""
1761	return self.omfpanel.check_inputs()
1762
1763	def set_main_panel_sld_data(self, sld_data):
1764	"""
1765	"""
1766	self.sld_data = sld_data
1767
1768	def set_file_location(self, path):
1769	"""
1770	File location
1771	"""
1772	self._default_save_location = path
1773
1774	def get_path(self):
1775	"""
1776	File location
1777	"""
1778	return self._default_save_location
1779
1780	def draw_graph(self, plot, title=''):
1781	"""
1782	"""
1783	frame = PlotFrame(self, -1, 'testView', self.scale2d)
1784	add_icon(self.parent, frame)
1785	frame.add_plot(plot)
1786	frame.SetTitle(title)
1787	frame.Show(True)
1788	frame.SetFocus()
1789
1790	def get_npix(self):
1791	"""
1792	Get no. of pixels from omf panel
1793	"""
1794	n_pix = self.omfpanel.npix_ctl.GetValue()
1795	return n_pix
1796
1797	def get_pix_volumes(self):
1798	"""
1799	Get a pixel volume
1800	"""
1801	vol = self.omfpanel.get_pix_volumes()
1802	return vol
1803
1804	def set_omfpanel_default_shap(self, shape):
1805	"""
1806	Set default_shape in omfpanel
1807	"""
1808	self.omfpanel.default_shape = shape
1809
1810	def set_etime(self):
1811	"""
1812	Sets est. computation time on panel
1813	"""
1814	self.panel.set_est_time()
1815
1816	def get_sld_data_from_omf(self):
1817	"""
1818	"""
1819	data = self.omfpanel.get_sld_val()
1820	return data
1821
1822	def set_scale2d(self, scale):
1823	"""
1824	"""
1825	self.scale2d = scale
1826
1827	def on_panel_close(self, event):
1828	"""
1829	"""
1830	#Not implemented
1831
1832	def on_open_file(self, event):
1833	"""
1834	On Open
1835	"""
1836	self.panel.on_load_data(event)
1837
1838	def sld_draw(self):
1839	"""
1840	sld draw
1841	"""
1842	self.panel.sld_draw(has_arrow=False)
1843
1844	def on_save_file(self, event):
1845	"""
1846	On Close
1847	"""
1848	self.omfpanel.on_save(event)
1849
1850	def on_close(self, event):
1851	"""
1852	Close
1853	"""
1854	self.Destroy()
1855
1856	def on_help(self, event):
1857	"""
1858	Gen scatter angle help panel
1859	"""
1860	from help_panel import HelpWindow
1861	# Get models help model_function path
1862	import sans.perspectives.calculator as calmedia
1863
1864	media = calmedia.get_data_path(media='media')
1865	path = os.path.join(media,"gen_sans_help.html")
1866	name = "Polarization Angle"
1867	frame = HelpWindow(self, -1, title=' Help: Polarization Angle',
1868	pageToOpen=path, size=(865, 450))
1869	try:
1870	frame.splitter.DetachWindow(frame.lpanel)
1871	# Display only the right side one
1872	frame.lpanel.Hide()
1873	frame.Show(True)
1874	except:
1875	frame.Destroy()
1876	msg = 'Display Error\n'
1877	info = "Info"
1878	wx.MessageBox(msg, info)
1879
1880	if __name__ == "__main__":
1881	app = wx.PySimpleApp()
1882	frame = SasGenWindow()
1883	frame.Show(True)
1884	app.MainLoop()

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SasView

source: sasview/calculatorview/src/sans/perspectives/calculator/gen_scatter_panel.py @ 1b28ff5

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