[fcb33e4] | 1 | // NOTE that "length" here is the full height of the core! |
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[44e8a93] | 2 | static double |
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| 3 | form_volume(double r_minor, |
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[becded3] | 4 | double x_core, |
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| 5 | double thick_rim, |
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| 6 | double thick_face, |
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| 7 | double length) |
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[fcb33e4] | 8 | { |
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[44e8a93] | 9 | return M_PI*(r_minor+thick_rim)*(r_minor*x_core+thick_rim)*(length+2.0*thick_face); |
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[fcb33e4] | 10 | } |
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| 11 | |
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[d277229] | 12 | static double |
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[99658f6] | 13 | radius_from_excluded_volume(double r_minor, double x_core, double thick_rim, double thick_face, double length) |
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| 14 | { |
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| 15 | const double r_equiv = sqrt((r_minor + thick_rim)*(r_minor*x_core + thick_rim)); |
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| 16 | const double length_tot = length + 2.0*thick_face; |
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| 17 | return 0.5*cbrt(0.75*r_equiv*(2.0*r_equiv*length_tot + (r_equiv + length_tot)*(M_PI*r_equiv + length_tot))); |
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| 18 | } |
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| 19 | |
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| 20 | static double |
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[d277229] | 21 | radius_from_volume(double r_minor, double x_core, double thick_rim, double thick_face, double length) |
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| 22 | { |
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| 23 | const double volume_bicelle = form_volume(r_minor, x_core, thick_rim,thick_face,length); |
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[6d5601c] | 24 | return cbrt(volume_bicelle/M_4PI_3); |
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[d277229] | 25 | } |
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| 26 | |
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| 27 | static double |
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| 28 | radius_from_diagonal(double r_minor, double x_core, double thick_rim, double thick_face, double length) |
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| 29 | { |
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| 30 | const double radius_max = (x_core < 1.0 ? r_minor : x_core*r_minor); |
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| 31 | const double radius_max_tot = radius_max + thick_rim; |
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| 32 | const double length_tot = length + 2.0*thick_face; |
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| 33 | return sqrt(radius_max_tot*radius_max_tot + 0.25*length_tot*length_tot); |
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| 34 | } |
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| 35 | |
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| 36 | static double |
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| 37 | effective_radius(int mode, double r_minor, double x_core, double thick_rim, double thick_face, double length) |
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| 38 | { |
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[ee60aa7] | 39 | switch (mode) { |
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[d42dd4a] | 40 | default: |
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[99658f6] | 41 | case 1: // equivalent cylinder excluded volume |
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| 42 | return radius_from_excluded_volume(r_minor, x_core, thick_rim, thick_face, length); |
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| 43 | case 2: // equivalent volume sphere |
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[d277229] | 44 | return radius_from_volume(r_minor, x_core, thick_rim, thick_face, length); |
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[99658f6] | 45 | case 3: // outer rim average radius |
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[d277229] | 46 | return 0.5*r_minor*(1.0 + x_core) + thick_rim; |
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[99658f6] | 47 | case 4: // outer rim min radius |
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[d277229] | 48 | return (x_core < 1.0 ? x_core*r_minor+thick_rim : r_minor+thick_rim); |
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[99658f6] | 49 | case 5: // outer max radius |
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[d277229] | 50 | return (x_core > 1.0 ? x_core*r_minor+thick_rim : r_minor+thick_rim); |
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[99658f6] | 51 | case 6: // half outer thickness |
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[d277229] | 52 | return 0.5*length + thick_face; |
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[99658f6] | 53 | case 7: // half diagonal |
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[d277229] | 54 | return radius_from_diagonal(r_minor,x_core,thick_rim,thick_face,length); |
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| 55 | } |
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| 56 | } |
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| 57 | |
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[71b751d] | 58 | static void |
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| 59 | Fq(double q, |
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| 60 | double *F1, |
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| 61 | double *F2, |
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[becded3] | 62 | double r_minor, |
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| 63 | double x_core, |
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| 64 | double thick_rim, |
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| 65 | double thick_face, |
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| 66 | double length, |
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| 67 | double sld_core, |
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| 68 | double sld_face, |
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| 69 | double sld_rim, |
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| 70 | double sld_solvent) |
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[fcb33e4] | 71 | { |
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| 72 | // core_shell_bicelle_elliptical, RKH Dec 2016, based on elliptical_cylinder and core_shell_bicelle |
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[dedcf34] | 73 | // tested against limiting cases of cylinder, elliptical_cylinder, stacked_discs, and core_shell_bicelle |
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[fcb33e4] | 74 | const double halfheight = 0.5*length; |
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[44e8a93] | 75 | const double r_major = r_minor * x_core; |
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[dedcf34] | 76 | const double r2A = 0.5*(square(r_major) + square(r_minor)); |
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| 77 | const double r2B = 0.5*(square(r_major) - square(r_minor)); |
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[2a0b2b1] | 78 | const double vol1 = M_PI*r_minor*r_major*(2.0*halfheight); |
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| 79 | const double vol2 = M_PI*(r_minor+thick_rim)*(r_major+thick_rim)*2.0*(halfheight+thick_face); |
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| 80 | const double vol3 = M_PI*r_minor*r_major*2.0*(halfheight+thick_face); |
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| 81 | const double dr1 = vol1*(sld_core-sld_face); |
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| 82 | const double dr2 = vol2*(sld_rim-sld_solvent); |
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| 83 | const double dr3 = vol3*(sld_face-sld_rim); |
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[fcb33e4] | 84 | |
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| 85 | //initialize integral |
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[71b751d] | 86 | double outer_total_F1 = 0.0; |
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| 87 | double outer_total_F2 = 0.0; |
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[74768cb] | 88 | for(int i=0;i<GAUSS_N;i++) { |
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[fcb33e4] | 89 | //setup inner integral over the ellipsoidal cross-section |
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[74768cb] | 90 | //const double cos_theta = ( GAUSS_Z[i]*(vb-va) + va + vb )/2.0; |
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| 91 | const double cos_theta = ( GAUSS_Z[i] + 1.0 )/2.0; |
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[2a0b2b1] | 92 | const double sin_theta = sqrt(1.0 - cos_theta*cos_theta); |
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| 93 | const double qab = q*sin_theta; |
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| 94 | const double qc = q*cos_theta; |
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| 95 | const double si1 = sas_sinx_x(halfheight*qc); |
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| 96 | const double si2 = sas_sinx_x((halfheight+thick_face)*qc); |
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[71b751d] | 97 | double inner_total_F1 = 0; |
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| 98 | double inner_total_F2 = 0; |
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[74768cb] | 99 | for(int j=0;j<GAUSS_N;j++) { |
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[fcb33e4] | 100 | //76 gauss points for the inner integral (WAS 20 points,so this may make unecessarily slow, but playing safe) |
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[71b751d] | 101 | //const double beta = ( GAUSS_Z[j]*(vbj-vaj) + vaj + vbj )/2.0; |
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| 102 | const double beta = ( GAUSS_Z[j] +1.0)*M_PI_2; |
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| 103 | const double rr = sqrt(r2A - r2B*cos(beta)); |
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[2a0b2b1] | 104 | const double be1 = sas_2J1x_x(rr*qab); |
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| 105 | const double be2 = sas_2J1x_x((rr+thick_rim)*qab); |
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[71b751d] | 106 | const double f = dr1*si1*be1 + dr2*si2*be2 + dr3*si2*be1; |
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[2a0b2b1] | 107 | |
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[71b751d] | 108 | inner_total_F1 += GAUSS_W[j] * f; |
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| 109 | inner_total_F2 += GAUSS_W[j] * f * f; |
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[fcb33e4] | 110 | } |
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| 111 | //now calculate outer integral |
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[71b751d] | 112 | outer_total_F1 += GAUSS_W[i] * inner_total_F1; |
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| 113 | outer_total_F2 += GAUSS_W[i] * inner_total_F2; |
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[fcb33e4] | 114 | } |
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[71b751d] | 115 | // now complete change of integration variables (1-0)/(1-(-1))= 0.5 |
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| 116 | outer_total_F1 *= 0.25; |
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| 117 | outer_total_F2 *= 0.25; |
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[fcb33e4] | 118 | |
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[71b751d] | 119 | //convert from [1e-12 A-1] to [cm-1] |
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| 120 | *F1 = 1e-2*outer_total_F1; |
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| 121 | *F2 = 1e-4*outer_total_F2; |
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[fcb33e4] | 122 | } |
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| 123 | |
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[44e8a93] | 124 | static double |
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[108e70e] | 125 | Iqabc(double qa, double qb, double qc, |
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[becded3] | 126 | double r_minor, |
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| 127 | double x_core, |
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| 128 | double thick_rim, |
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| 129 | double thick_face, |
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| 130 | double length, |
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| 131 | double sld_core, |
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| 132 | double sld_face, |
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| 133 | double sld_rim, |
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| 134 | double sld_solvent) |
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[fcb33e4] | 135 | { |
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[2a0b2b1] | 136 | const double dr1 = sld_core-sld_face; |
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| 137 | const double dr2 = sld_rim-sld_solvent; |
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| 138 | const double dr3 = sld_face-sld_rim; |
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[44e8a93] | 139 | const double r_major = r_minor*x_core; |
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[fcb33e4] | 140 | const double halfheight = 0.5*length; |
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[44e8a93] | 141 | const double vol1 = M_PI*r_minor*r_major*length; |
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| 142 | const double vol2 = M_PI*(r_minor+thick_rim)*(r_major+thick_rim)*2.0*(halfheight+thick_face); |
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| 143 | const double vol3 = M_PI*r_minor*r_major*2.0*(halfheight+thick_face); |
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[fcb33e4] | 144 | |
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[44e8a93] | 145 | // Compute effective radius in rotated coordinates |
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[82592da] | 146 | const double qr_hat = sqrt(square(r_major*qb) + square(r_minor*qa)); |
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| 147 | const double qrshell_hat = sqrt(square((r_major+thick_rim)*qb) |
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| 148 | + square((r_minor+thick_rim)*qa)); |
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[2a0b2b1] | 149 | const double be1 = sas_2J1x_x( qr_hat ); |
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| 150 | const double be2 = sas_2J1x_x( qrshell_hat ); |
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| 151 | const double si1 = sas_sinx_x( halfheight*qc ); |
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| 152 | const double si2 = sas_sinx_x( (halfheight + thick_face)*qc ); |
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| 153 | const double fq = vol1*dr1*si1*be1 + vol2*dr2*si2*be2 + vol3*dr3*si2*be1; |
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| 154 | return 1.0e-4 * fq*fq; |
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[fcb33e4] | 155 | } |
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