-                      rffbe487
+                      reda8972
 """
     CanSAS data reader
+    CanSAS data reader - new recursive cansasVersion.
 """
 ############################################################################
 …
 #############################################################################
-# Known issue: reader not compatible with multiple SASdata entries
-# within a single SASentry. Will raise a runtime error.
-#TODO: check that all vectors are written only if they have at
-#    least one non-empty value
-#TODO: Writing only allows one SASentry per file.
-#     Would be best to allow multiple entries.
-#TODO: Store error list
-#TODO: Allow for additional meta data for each section
-#TODO: Notes need to be implemented. They can be any XML
-#    structure in version 1.0
-#      Process notes have the same problem.
-#TODO: Unit conversion is not complete (temperature units are missing)
 import logging
 import numpy
 …
 from sans.dataloader.data_info import Process
 from sans.dataloader.data_info import Aperture
+from lxml import etree
+import xml_reader
 import xml.dom.minidom
+from cansas_constants import cansasConstants
 _ZERO = 1e-16
 HAS_CONVERTER = True
 …
 except:
     HAS_CONVERTER = False
+CANSAS_NS = "cansas1d/1.0"
+CANSAS_FORMAT = cansasConstants.CANSAS_FORMAT
+CANSAS_NS = cansasConstants.CANSAS_NS
 ALLOW_ALL = True
 …
         return True
     return False
 def get_content(location, node):
 …
     return value, attr
+class Reader:
+class CANSASError(Exception):
+    """Base class all CANSAS reader exceptions are derived"""
+    pass
+class NotCANSASFileError(CANSASError):
+    def __init__(self):
+        self.value = "This is not a proper CanSAS file."
+    def __str__(self):
+        return repr(self.value)
+class Reader():
     """
     Class to load cansas 1D XML files
     :Dependencies:
+        The CanSas reader requires PyXML 0.8.4 or later.
+    """
+    ## CanSAS version
+    version = '1.0'
+    ## File type
+    type_name = "CanSAS 1D"
+    ## Wildcards
+    type = ["CanSAS 1D files (*.xml)|*.xml",
+                        "CanSAS 1D AVE files (*.AVEx)|*.AVEx",
+                         "CanSAS 1D AVE files (*.ABSx)|*.ABSx"]
+    ## List of allowed extensions
+    ext = ['.xml', '.XML', '.avex', '.AVEx', '.absx', 'ABSx']
+        The CanSAS reader requires PyXML 0.8.4 or later.
+    """
+    ##CanSAS version - defaults to version 1.0
+    cansasVersion = "1.0"
+    ##Data reader
+    reader = xml_reader.XMLreader()
+    errors = []
     def __init__(self):
         ## List of errors
         self.errors = []
+    def read(self, path):
+        """
+        Load data file
+        :param path: file path
+        :return: Data1D object if a single SASentry was found,
+                    or a list of Data1D objects if multiple entries were found,
+                    or None of nothing was found
+    def isCansas(self):
+        """
+        Checks to see if the xml file is a CanSAS file
+        """
+        if self.reader.validateXML():
+            xmlns = self.reader.xmlroot.keys()
+            if (CANSAS_NS.get(self.cansasVersion).get("ns") == self.reader.xmlroot.get(xmlns[1]).rsplit(" ")[0]):
+                return True
+        return False
+    def read(self, xml):
+        """
+        Validate and read in an xml file in the canSAS format.
+        :param xml: A canSAS file path in proper XML format
+        """
+        # X - Q value; Y - Intensity (Abs)
+        x = numpy.empty(0)
+        y = numpy.empty(0)
+        dx = numpy.empty(0)
+        dy = numpy.empty(0)
+        dxl = numpy.empty(0)
+        dxw = numpy.empty(0)
+        # output - Final list of Data1D objects
+        output = []
+        # ns - Namespace hierarchy for current xml object
+        ns = []
+        try:
+            # Load in the xml file and get the cansas version from the header
+            self.reader.setXMLFile(xml)
+            root = self.reader.xmlroot
+            self.cansasVersion = root.get("version")
+            # Generic values for the cansas file based on the version
+            cansas_defaults = CANSAS_NS.get(self.cansasVersion)
+            # Link a schema to the XML file.
+            basename = os.path.basename(xml)
+            base_name = xml_reader.__file__
+            base = base_name.split("\\sans\\")[0]
+            schema_path = "{0}\\sans\\dataloader\\readers\\schema\\{1}".format(base, cansas_defaults.get("schema")).replace("\\", "/")
+            self.reader.setSchema(schema_path)
+            # Try to load the file, but raise an error if unable to.
+            # Check the file matches the XML schema
+            if self.isCansas():
+                # Get each SASentry from the XML file and add it to a list.
+                entry_list = root.xpath('/ns:SASroot/ns:SASentry',
+                                             namespaces={'ns': cansas_defaults.get("ns")})
+                ns.append("SASentry")
+                # If there are multiple files, modify the name for each is unique
+                multipleFiles = len(entry_list) - 1
+                n = 0
+                name = basename
+                # Parse each SASentry item
+                for entry in entry_list:
+        :raise RuntimeError: when the file can't be opened
+        :raise ValueError: when the length of the data vectors are inconsistent
+        """
+        output = []
+        if os.path.isfile(path):
+            basename = os.path.basename(path)
+            root, extension = os.path.splitext(basename)
+            if ALLOW_ALL or extension.lower() in self.ext:
+                try:
+                    tree = etree.parse(path, parser=etree.ETCompatXMLParser())
+                    # Check the format version number
+                    # Specifying the namespace will take care of the file
+                    # format version
+                    root = tree.getroot()
+                    # Define a new Data1D object with zeroes for x and y
+                    data1D = Data1D(x,y,dx,dy)
+                    data1D.dxl = dxl
+                    data1D.dxw = dxw
+                    entry_list = root.xpath('/ns:SASroot/ns:SASentry',
+                                             namespaces={'ns': CANSAS_NS})
+                    # If more than one SASentry, number each in order
+                    if multipleFiles:
+                        name += "_{0}".format(n)
+                        n += 1
+                    for entry in entry_list:
+                        self.errors = []
+                        sas_entry = self._parse_entry(entry)
+                        sas_entry.filename = basename
+                        # Store loading process information
+                        sas_entry.errors = self.errors
+                        sas_entry.meta_data['loader'] = self.type_name
+                        output.append(sas_entry)
+                except:
+                    raise RuntimeError, "%s cannot be read \n" % path
+        else:
+            raise RuntimeError, "%s is not a file" % path
+        # Return output consistent with the loader's api
+        if len(output) == 0:
+            #cannot return none when it cannot read
+            #return None
+            raise RuntimeError, "%s cannot be read \n" % path
+        elif len(output) == 1:
+            return output[0]
+        else:
+            return output
+    def _parse_entry(self, dom):
+        """
+        Parse a SASentry
+        :param node: SASentry node
+        :return: Data1D object
+        """
+        x = numpy.zeros(0)
+        y = numpy.zeros(0)
+        data_info = Data1D(x, y)
+        # Look up title
+        self._store_content('ns:Title', dom, 'title', data_info)
+        # Look up run number
+        nodes = dom.xpath('ns:Run', namespaces={'ns': CANSAS_NS})
+        for item in nodes:
+            if item.text is not None:
+                value = item.text.strip()
+                if len(value) > 0:
+                    data_info.run.append(value)
+                    if item.get('name') is not None:
+                        data_info.run_name[value] = item.get('name')
+        # Look up instrument name
+        self._store_content('ns:SASinstrument/ns:name', dom, 'instrument',
+                             data_info)
+        # Notes
+        note_list = dom.xpath('ns:SASnote', namespaces={'ns': CANSAS_NS})
+        for note in note_list:
+                    # Set the Data1D name and then parse the entry. The entry is appended to a list of entry values
+                    data1D.filename = name
+                    data1D.meta_data["loader"] = "CanSAS 1D"
+                    return_value, extras = self._parse_entry(entry, ns, data1D)
+                    del extras[:]
+                    #Final cleanup - Remove empty nodes, verify array sizes are correct
+                    return_value.errors = self.errors
+                    del self.errors[:]
+                    numpy.trim_zeros(return_value.x)
+                    numpy.trim_zeros(return_value.y)
+                    numpy.trim_zeros(return_value.dy)
+                    size_dx = return_value.dx.size
+                    size_dxl = return_value.dxl.size
+                    size_dxw = return_value.dxw.size
+                    if size_dxl == 0 and size_dxw == 0:
+                        return_value.dxl = None
+                        return_value.dxw = None
+                        numpy.trim_zeros(return_value.dx)
+                    elif size_dx == 0:
+                        return_value.dx = None
+                        size_dx = size_dxl
+                        numpy.trim_zeros(return_value.dxl)
+                        numpy.trim_zeros(return_value.dxw)
+                    output.append(return_value)
+            else:
+                # If the file does not match the schema, raise this error
+                raise RuntimeError, "%s cannot be read \n" % xml
+        # If an exception occurs while loading the file, give a descriptive output.
+        except Exception:
+            raise RuntimeError, "%s cannot be read \n" % xml
+        # Return a list of parsed entries that dataloader can manage
+        return output
+    def _create_unique_key(self, dictionary, name, i):
+        if dictionary.get(name) is not None:
+            i += 1
+            name = name.split("_")[0]
+            name += "_{0}".format(i)
+            name = self._create_unique_key(dictionary, name, i)
+        return name
+    def _iterate_namespace(self, ns):
+        # The current level to look through in cansas_constants.
+        current_level = CANSAS_FORMAT.get("SASentry")
+        # Defaults for variable and datatype
+        ns_variable = "{0}.meta_data[\"{2}\"] = \"{1}\""
+        ns_datatype = "content"
+        ns_optional = True
+        for name in ns:
+            if name != "SASentry":
+                current_level = current_level.get("children").get(name, "")
+                if current_level == "":
+                    current_level = current_level.get("<any>", "")
+                cl_variable = current_level.get("variable", "")
+                cl_datatype = current_level.get("storeas", "")
+                cl_units_optional = current_level.get("units_required", "")
+                # Where are how to store the variable for the given namespace
+                # The CANSAS_CONSTANTS tree is hierarchical, so is no value, inherit
+                ns_variable = cl_variable if cl_variable != "" else ns_variable
+                ns_datatype = cl_datatype if cl_datatype != "" else ns_datatype
+                ns_optional = cl_units_optional if cl_units_optional != ns_optional else ns_optional
+        return current_level, ns_variable, ns_datatype, ns_optional
+    def _unit_conversion(self, new_current_level, attr, data1D, node_value, optional = True):
+        value_unit = ''
+        if 'unit' in attr and 'unit' in new_current_level:
             try:
+                if note.text is not None:
+                    note_value = note.text.strip()
+                    if len(note_value) > 0:
+                        data_info.notes.append(note_value)
+            except:
+                err_mess = "cansas_reader.read: error processing"
+                err_mess += " entry notes\n  %s" % sys.exc_value
+                self.errors.append(err_mess)
+                logging.error(err_mess)
+        # Sample info ###################
+        entry = get_content('ns:SASsample', dom)
+        if entry is not None:
+            data_info.sample.name = entry.get('name')
+        self._store_content('ns:SASsample/ns:ID',
+                     dom, 'ID', data_info.sample)
+        self._store_float('ns:SASsample/ns:thickness',
+                     dom, 'thickness', data_info.sample)
+        self._store_float('ns:SASsample/ns:transmission',
+                     dom, 'transmission', data_info.sample)
+        self._store_float('ns:SASsample/ns:temperature',
+                     dom, 'temperature', data_info.sample)
+        nodes = dom.xpath('ns:SASsample/ns:details',
+                          namespaces={'ns': CANSAS_NS})
+        for item in nodes:
+                if isinstance(node_value, float) is False:
+                    exec("node_value = float({0})".format(node_value))
+                default_unit = None
+                unitname = new_current_level.get("unit")
+                exec "default_unit = data1D.{0}.lower()".format(unitname)
+                local_unit = attr['unit'].lower()
+                if local_unit != default_unit:
+                    if HAS_CONVERTER == True:
+                        try:
+                            data_conv_q = Converter(attr['unit'])
+                            value_unit = default_unit
+                            exec "node_value = data_conv_q(node_value, units=data1D.{0})".format(unitname)
+                        except:
+                            msg = "CanSAS reader: could not convert "
+                            msg += "Q unit [%s]; " % attr['unit'],
+                            exec "msg += \"expecting [%s]\n  %s\" % (data1D.{0}, sys.exc_info()[1])".format(unitname)
+                            raise ValueError, msg
+                    else:
+                        value_unit = local_unit
+                        err_mess = "CanSAS reader: unrecognized %s unit [%s];"\
+                        % (node_value, default_unit)
+                        err_mess += " expecting [%s]" % local_unit
+                        self.errors.append(err_mess)
+                        if optional:
+                            logging.info(err_mess)
+                        else:
+                            raise ValueError, err_mess
+            except Exception as e:
+                msg = "CanSAS reader: could not convert "
+                msg += "Q unit [%s]; " % attr['unit'],
+                exec "msg += \"expecting [%s]\n  %s\" % (data1D.{0}, sys.exc_info()[1])".format(unitname)
+                self.errors.append(msg)
+                raise ValueError, msg
+        elif 'unit' in attr:
+            value_unit = attr['unit']
+        node_value = "float({0})".format(node_value)
+        return node_value, value_unit
+    def _parse_entry(self, dom, ns, data1D, extras = []):
+        """
+        Parse a SASEntry - new recursive method for parsing the dom of
+            the CanSAS data format. This will allow multiple data files
+            and extra nodes to be read in simultaneously.
+        :param dom: dom object with a namespace base of ns
+        :param ns: A list of element names that lead up to the dom object
+        :param data1D: The data1D object that will be modified
+        """
+        # A portion of every namespace entry
+        base_ns = "{0}{1}{2}".format("{", CANSAS_NS.get(self.cansasVersion).get("ns"), "}")
+        unit = ''
+        # Go through each child in the parent element
+        for node in dom:
             try:
+                if item.text is not None:
+                    detail_value = item.text.strip()
+                    if len(detail_value) > 0:
+                        data_info.sample.details.append(detail_value)
+            except:
+                err_mess = "cansas_reader.read: error processing "
+                err_mess += " sample details\n  %s" % sys.exc_value
+                self.errors.append(err_mess)
+                logging.error(err_mess)
+        # Position (as a vector)
+        self._store_float('ns:SASsample/ns:position/ns:x',
+                     dom, 'position.x', data_info.sample)
+        self._store_float('ns:SASsample/ns:position/ns:y',
+                     dom, 'position.y', data_info.sample)
+        self._store_float('ns:SASsample/ns:position/ns:z',
+                     dom, 'position.z', data_info.sample)
+        # Orientation (as a vector)
+        self._store_float('ns:SASsample/ns:orientation/ns:roll',
+                     dom, 'orientation.x', data_info.sample)
+        self._store_float('ns:SASsample/ns:orientation/ns:pitch',
+                     dom, 'orientation.y', data_info.sample)
+        self._store_float('ns:SASsample/ns:orientation/ns:yaw',
+                     dom, 'orientation.z', data_info.sample)
+        # Source info ###################
+        entry = get_content('ns:SASinstrument/ns:SASsource', dom)
+        if entry is not None:
+            data_info.source.name = entry.get('name')
+        self._store_content('ns:SASinstrument/ns:SASsource/ns:radiation',
+                     dom, 'radiation', data_info.source)
+        self._store_content('ns:SASinstrument/ns:SASsource/ns:beam_shape',
+                     dom, 'beam_shape', data_info.source)
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:wavelength',
+                     dom, 'wavelength', data_info.source)
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:wavelength_min',
+                     dom, 'wavelength_min', data_info.source)
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:wavelength_max',
+                     dom, 'wavelength_max', data_info.source)
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:wavelength_spread',
+                     dom, 'wavelength_spread', data_info.source)
+        # Beam size (as a vector)
+        entry = get_content('ns:SASinstrument/ns:SASsource/ns:beam_size', dom)
+        if entry is not None:
+            data_info.source.beam_size_name = entry.get('name')
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:beam_size/ns:x',
+                     dom, 'beam_size.x', data_info.source)
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:beam_size/ns:y',
+                     dom, 'beam_size.y', data_info.source)
+        self._store_float('ns:SASinstrument/ns:SASsource/ns:beam_size/ns:z',
+                     dom, 'beam_size.z', data_info.source)
+        # Collimation info ###################
+        nodes = dom.xpath('ns:SASinstrument/ns:SAScollimation',
+                          namespaces={'ns': CANSAS_NS})
+        for item in nodes:
+            collim = Collimation()
+            if item.get('name') is not None:
+                collim.name = item.get('name')
+            self._store_float('ns:length', item, 'length', collim)
+            # Look for apertures
+            apert_list = item.xpath('ns:aperture', namespaces={'ns': CANSAS_NS})
+            for apert in apert_list:
+                aperture = Aperture()
+                # Get the name and type of the aperture
+                aperture.name = apert.get('name')
+                aperture.type = apert.get('type')
+                # Get the element name and set the current ns level
+                tagname = node.tag.replace(base_ns, "")
+                tagname_original = tagname
+                ns.append(tagname)
+                attr = node.attrib
+                # Look for special cases
+                save_data1D = data1D
+                if tagname == "SASdetector":
+                    data1D = Detector()
+                elif tagname == "SAScollimation":
+                    data1D = Collimation()
+                elif tagname == "SASprocess":
+                    data1D = Process()
+                    for child in node:
+                        if child.tag.replace(base_ns, "") == "term":
+                            term_attr = {}
+                            for attr in child.keys():
+                                term_attr[attr] = child.get(attr).strip()
+                            if child.text is not None:
+                                term_attr['value'] = child.text.strip()
+                                data1D.term.append(term_attr)
+                elif tagname == "aperture":
+                    data1D = Aperture()
+                # Get where to store content
+                new_current_level, ns_variable, ns_datatype, optional = self._iterate_namespace(ns)
+                # If the element is a child element, recurse
+                if node.getchildren() is not None:
+                    # Returned value is new Data1D object with all previous and new values in it.
+                    data1D, extras = self._parse_entry(node, ns, data1D, extras)
+                self._store_float('ns:distance', apert, 'distance', aperture)
+                entry = get_content('ns:size', apert)
+                if entry is not None:
+                    aperture.size_name = entry.get('name')
+                self._store_float('ns:size/ns:x', apert, 'size.x', aperture)
+                self._store_float('ns:size/ns:y', apert, 'size.y', aperture)
+                self._store_float('ns:size/ns:z', apert, 'size.z', aperture)
+                collim.aperture.append(aperture)
+            data_info.collimation.append(collim)
+        # Detector info ######################
+        nodes = dom.xpath('ns:SASinstrument/ns:SASdetector',
+                           namespaces={'ns': CANSAS_NS})
+        for item in nodes:
+            detector = Detector()
+            self._store_content('ns:name', item, 'name', detector)
+            self._store_float('ns:SDD', item, 'distance', detector)
+            # Detector offset (as a vector)
+            self._store_float('ns:offset/ns:x', item, 'offset.x', detector)
+            self._store_float('ns:offset/ns:y', item, 'offset.y', detector)
+            self._store_float('ns:offset/ns:z', item, 'offset.z', detector)
+            # Detector orientation (as a vector)
+            self._store_float('ns:orientation/ns:roll', item, 'orientation.x',
+                               detector)
+            self._store_float('ns:orientation/ns:pitch', item, 'orientation.y',
+                               detector)
+            self._store_float('ns:orientation/ns:yaw', item, 'orientation.z',
+                               detector)
+            # Beam center (as a vector)
+            self._store_float('ns:beam_center/ns:x', item, 'beam_center.x',
+                               detector)
+            self._store_float('ns:beam_center/ns:y', item, 'beam_center.y',
+                              detector)
+            self._store_float('ns:beam_center/ns:z', item, 'beam_center.z',
+                               detector)
+            # Pixel size (as a vector)
+            self._store_float('ns:pixel_size/ns:x', item, 'pixel_size.x',
+                               detector)
+            self._store_float('ns:pixel_size/ns:y', item, 'pixel_size.y',
+                               detector)
+            self._store_float('ns:pixel_size/ns:z', item, 'pixel_size.z',
+                               detector)
+            self._store_float('ns:slit_length', item, 'slit_length', detector)
+            data_info.detector.append(detector)
+        # Processes info ######################
+        nodes = dom.xpath('ns:SASprocess', namespaces={'ns': CANSAS_NS})
+        for item in nodes:
+            process = Process()
+            self._store_content('ns:name', item, 'name', process)
+            self._store_content('ns:date', item, 'date', process)
+            self._store_content('ns:description', item, 'description', process)
+            term_list = item.xpath('ns:term', namespaces={'ns': CANSAS_NS})
+            for term in term_list:
+                try:
+                    term_attr = {}
+                    for attr in term.keys():
+                        term_attr[attr] = term.get(attr).strip()
+                    if term.text is not None:
+                        term_attr['value'] = term.text.strip()
+                        process.term.append(term_attr)
+                except:
+                    err_mess = "cansas_reader.read: error processing "
+                    err_mess += " process term\n  %s" % sys.exc_value
+                    self.errors.append(err_mess)
+                    logging.error(err_mess)
+            note_list = item.xpath('ns:SASprocessnote',
+                                   namespaces={'ns': CANSAS_NS})
+            for note in note_list:
+                if note.text is not None:
+                    process.notes.append(note.text.strip())
+            data_info.process.append(process)
+        # Data info ######################
+        nodes = dom.xpath('ns:SASdata', namespaces={'ns': CANSAS_NS})
+        if len(nodes) > 1:
+            msg = "CanSAS reader is not compatible with multiple"
+            msg += " SASdata entries"
+            raise RuntimeError, msg
+        nodes = dom.xpath('ns:SASdata/ns:Idata', namespaces={'ns': CANSAS_NS})
+        x = numpy.zeros(0)
+        y = numpy.zeros(0)
+        dx = numpy.zeros(0)
+        dy = numpy.zeros(0)
+        dxw = numpy.zeros(0)
+        dxl = numpy.zeros(0)
+        for item in nodes:
+            _x, attr = get_float('ns:Q', item)
+            _dx, attr_d = get_float('ns:Qdev', item)
+            _dxl, attr_l = get_float('ns:dQl', item)
+            _dxw, attr_w = get_float('ns:dQw', item)
+            if _dx == None:
+                _dx = 0.0
+            if _dxl == None:
+                _dxl = 0.0
+            if _dxw == None:
+                _dxw = 0.0
+            if 'unit' in attr and \
+                attr['unit'].lower() != data_info.x_unit.lower():
+                if HAS_CONVERTER == True:
+                    try:
+                        data_conv_q = Converter(attr['unit'])
+                        _x = data_conv_q(_x, units=data_info.x_unit)
+                    except:
+                        msg = "CanSAS reader: could not convert "
+                        msg += "Q unit [%s]; " % attr['unit'],
+                        msg += "expecting [%s]\n  %s" % (data_info.x_unit,
+                                                         sys.exc_value)
+                        raise ValueError, msg
+                #Get the information from the node
+                node_value = node.text
+                if node_value is not None:
+                    node_value = node_value.strip().replace("\r"," ").replace("\n"," ")
+                if node_value == "":
+                    node_value = None
+                # If the value is a float, compile with units.
+                if ns_datatype == "float":
+                    # If an empty value is given, store as zero.
+                    if node_value is None:
+                        node_value = "0.0"
+                    elif node_value.isspace():
+                        node_value = "0.0"
+                    node_value, unit = self._unit_conversion(new_current_level, attr, data1D, node_value, optional)
+                # If appending to a dictionary (meta_data | run_name), name sure the key is unique
+                if ns_variable == "{0}.meta_data[\"{2}\"] = \"{1}\"":
+                    # If we are within a Process, Detector, Collimation or Aperture instance, pull out old data1D
+                    tagname = self._create_unique_key(data1D.meta_data, tagname, 0)
+                    if isinstance(data1D, Data1D) == False:
+                        store_me = ns_variable.format("data1D", node_value, tagname)
+                        extras.append(store_me)
+                        ns_variable = None
+                if ns_variable == "{0}.run_name[\"{2}\"] = \"{1}\"":
+                    tagname = self._create_unique_key(data1D.run_name, tagname, 0)
+                # Check for Data1D object and any extra commands to save
+                if isinstance(data1D, Data1D):
+                    for item in extras:
+                        exec item
+                # Don't bother saving empty information unless it is a float
+                if ns_variable is not None and node_value is not None and node_value.isspace() == False:
+                    # Format a string and then execute it.
+                    store_me = ns_variable.format("data1D", node_value, tagname)
+                    exec store_me
+                # Get attributes and process them
+                if attr is not None:
+                    for key in node.keys():
+                        try:
+                            cansas_attrib = new_current_level.get("attributes").get(key)
+                            attrib_variable = cansas_attrib.get("variable")
+                            if key == 'unit' and unit != '':
+                                attrib_value = unit
+                            else:
+                                attrib_value = node.attrib[key]
+                            store_attr = attrib_variable.format("data1D", attrib_value, key)
+                            exec store_attr
+                        except AttributeError as e:
+                            pass
+            except Exception as e:
+                exc_type, exc_obj, exc_tb = sys.exc_info()
+                fname = os.path.split(exc_tb.tb_frame.f_code.co_filename)[1]
+                print(e, exc_type, fname, exc_tb.tb_lineno, tagname, exc_obj)
+            finally:
+                # Save special cases in original data1D object and then restore the data1D
+                if tagname_original == "SASdetector":
+                    save_data1D.detector.append(data1D)
+                elif tagname_original == "SAScollimation":
+                    save_data1D.collimation.append(data1D)
+                elif tagname_original == "SASprocess":
+                    save_data1D.process.append(data1D)
+                elif tagname_original == "aperture":
+                    save_data1D.aperture.append(data1D)
                 else:
+                    msg = "CanSAS reader: unrecognized Q unit [%s]; "\
+                    % attr['unit']
+                    msg += "expecting [%s]" % data_info.x_unit
+                    raise ValueError, msg
+            # Error in Q
+            if 'unit' in attr_d and \
+                attr_d['unit'].lower() != data_info.x_unit.lower():
+                if HAS_CONVERTER == True:
+                    try:
+                        data_conv_q = Converter(attr_d['unit'])
+                        _dx = data_conv_q(_dx, units=data_info.x_unit)
+                    except:
+                        msg = "CanSAS reader: could not convert dQ unit [%s]; "\
+                        % attr['unit']
+                        msg += " expecting "
+                        msg += "[%s]\n  %s" % (data_info.x_unit, sys.exc_value)
+                        raise ValueError, msg
+                else:
+                    msg = "CanSAS reader: unrecognized dQ unit [%s]; "\
+                    % attr['unit']
+                    msg += "expecting [%s]" % data_info.x_unit
+                    raise ValueError, msg
+            # Slit length
+            if 'unit' in attr_l and \
+                attr_l['unit'].lower() != data_info.x_unit.lower():
+                if HAS_CONVERTER == True:
+                    try:
+                        data_conv_q = Converter(attr_l['unit'])
+                        _dxl = data_conv_q(_dxl, units=data_info.x_unit)
+                    except:
+                        msg = "CanSAS reader: could not convert dQl unit [%s];"\
+                        % attr['unit']
+                        msg += " expecting [%s]\n  %s" % (data_info.x_unit,
+                                                          sys.exc_value)
+                        raise ValueError, msg
+                else:
+                    msg = "CanSAS reader: unrecognized dQl unit [%s];"\
+                    % attr['unit']
+                    msg += " expecting [%s]" % data_info.x_unit
+                    raise ValueError, msg
+            # Slit width
+            if 'unit' in attr_w and \
+            attr_w['unit'].lower() != data_info.x_unit.lower():
+                if HAS_CONVERTER == True:
+                    try:
+                        data_conv_q = Converter(attr_w['unit'])
+                        _dxw = data_conv_q(_dxw, units=data_info.x_unit)
+                    except:
+                        msg = "CanSAS reader: could not convert dQw unit [%s];"\
+                        % attr['unit']
+                        msg += " expecting [%s]\n  %s" % (data_info.x_unit,
+                                                          sys.exc_value)
+                        raise ValueError, msg
+                else:
+                    msg = "CanSAS reader: unrecognized dQw unit [%s];"\
+                    % attr['unit']
+                    msg += " expecting [%s]" % data_info.x_unit
+                    raise ValueError, msg
+            _y, attr = get_float('ns:I', item)
+            _dy, attr_d = get_float('ns:Idev', item)
+            if _dy == None:
+                _dy = 0.0
+            if 'unit' in attr and \
+            attr['unit'].lower() != data_info.y_unit.lower():
+                if HAS_CONVERTER == True:
+                    try:
+                        data_conv_i = Converter(attr['unit'])
+                        _y = data_conv_i(_y, units=data_info.y_unit)
+                    except:
+                        if attr['unit'].lower() == 'count':
+                            pass
+                        else:
+                            msg = "CanSAS reader: could not"
+                            msg += " convert I(q) unit [%s];" % str(attr['unit'])
+                            msg += " expecting [%s]\n" % str(data_info.y_unit)
+                            msg += "  %s" % str(sys.exc_value)
+                            raise ValueError, msg
+                else:
+                    msg = "CanSAS reader: unrecognized I(q) unit [%s];"\
+                    % attr['unit']
+                    msg += " expecting [%s]" % data_info.y_unit
+                    raise ValueError, msg
+            if 'unit' in attr_d and \
+            attr_d['unit'].lower() != data_info.y_unit.lower():
+                if HAS_CONVERTER == True:
+                    try:
+                        data_conv_i = Converter(attr_d['unit'])
+                        _dy = data_conv_i(_dy, units=data_info.y_unit)
+                    except:
+                        if attr_d['unit'].lower() == 'count':
+                            pass
+                        else:
+                            msg = "CanSAS reader: could not convert dI(q) unit "
+                            msg += "[%s]; expecting [%s]\n  %s" % (attr_d['unit'],
+                                                 data_info.y_unit, sys.exc_value)
+                            raise ValueError, msg
+                else:
+                    msg = "CanSAS reader: unrecognized dI(q) unit [%s]; "\
+                    % attr_d['unit']
+                    msg += "expecting [%s]" % data_info.y_unit
+                    raise ValueError, msg
+            if _x is not None and _y is not None:
+                x = numpy.append(x, _x)
+                y = numpy.append(y, _y)
+                dx = numpy.append(dx, _dx)
+                dy = numpy.append(dy, _dy)
+                dxl = numpy.append(dxl, _dxl)
+                dxw = numpy.append(dxw, _dxw)
+        # Zeros in dx, dy
+        if not numpy.all(dx == 0):
+            dx[dx == 0] = _ZERO
+        if not numpy.all(dy == 0):
+            dy[dy == 0] = _ZERO
+        data_info.x = x[x != 0]
+        data_info.y = y[x != 0]
+        data_info.dx = dx[x != 0]
+        data_info.dy = dy[x != 0]
+        data_info.dxl = dxl[x != 0]
+        data_info.dxw = dxw[x != 0]
+        data_conv_q = None
+        data_conv_i = None
+        if HAS_CONVERTER == True and data_info.x_unit != '1/A':
+            data_conv_q = Converter('1/A')
+            # Test it
+            data_conv_q(1.0, data_info.x_unit)
+        if HAS_CONVERTER == True and data_info.y_unit != '1/cm':
+            data_conv_i = Converter('1/cm')
+            # Test it
+            data_conv_i(1.0, data_info.y_unit)
+        if data_conv_q is not None:
+            data_info.xaxis("\\rm{Q}", data_info.x_unit)
+        else:
+            data_info.xaxis("\\rm{Q}", 'A^{-1}')
+        if data_conv_i is not None:
+            data_info.yaxis("\\rm{Intensity}", data_info.y_unit)
+        else:
+            data_info.yaxis("\\rm{Intensity}", "cm^{-1}")
+        return data_info
+                    save_data1D = data1D
+                data1D = save_data1D
+                # Remove tagname from ns to restore original base
+                ns.remove(tagname_original)
+        return data1D, extras
     def _to_xml_doc(self, datainfo):
         """
 …
         doc = xml.dom.minidom.Document()
         main_node = doc.createElement("SASroot")
         main_node.setAttribute("version", self.version)
         main_node.setAttribute("xmlns", "cansas1d/%s" % self.version)
+        main_node.setAttribute("cansasVersion", self.cansasVersion)
+        main_node.setAttribute("xmlns", "cansas1d/%s" % self.cansasVersion)
         main_node.setAttribute("xmlns:xsi",
                                "http://www.w3.org/2001/XMLSchema-instance")
         main_node.setAttribute("xsi:schemaLocation",
                                "cansas1d/%s http://svn.smallangles.net/svn/canSAS/1dwg/trunk/cansas1d.xsd" % self.version)
+                               "cansas1d/%s http://svn.smallangles.net/svn/canSAS/1dwg/trunk/cansas1d.xsd" % self.cansasVersion)
         doc.appendChild(main_node)
 …
         fd.write(doc.toprettyxml())
         fd.close()
-    def _store_float(self, location, node, variable, storage, optional=True):
-        """
-        Get the content of a xpath location and store
-        the result. Check that the units are compatible
-        with the destination. The value is expected to
-        be a float.
-        The xpath location might or might not exist.
-        If it does not exist, nothing is done
-        :param location: xpath location to fetch
-        :param node: node to read the data from
-        :param variable: name of the data member to store it in [string]
-        :param storage: data object that has the 'variable' data member
-        :param optional: if True, no exception will be raised
-            if unit conversion can't be done
-        :raise ValueError: raised when the units are not recognized
-        """
-        entry = get_content(location, node)
-        try:
-            value = float(entry.text)
-        except:
-            value = None
-        if value is not None:
-            # If the entry has units, check to see that they are
-            # compatible with what we currently have in the data object
-            units = entry.get('unit')
-            if units is not None:
-                toks = variable.split('.')
-                local_unit = None
-                exec "local_unit = storage.%s_unit" % toks[0]
-                if local_unit != None and units.lower() != local_unit.lower():
-                    if HAS_CONVERTER == True:
-                        try:
-                            conv = Converter(units)
-                            exec "storage.%s = %g" % (variable,
-                                            conv(value, units=local_unit))
-                        except:
-                            err_mess = "CanSAS reader: could not convert"
-                            err_mess += " %s unit [%s]; expecting [%s]\n  %s" \
-                                % (variable, units, local_unit, sys.exc_value)
-                            self.errors.append(err_mess)
-                            if optional:
-                                logging.info(err_mess)
-                            else:
-                                raise ValueError, err_mess
-                    else:
-                        err_mess = "CanSAS reader: unrecognized %s unit [%s];"\
-                        % (variable, units)
-                        err_mess += " expecting [%s]" % local_unit
-                        self.errors.append(err_mess)
-                        if optional:
-                            logging.info(err_mess)
-                        else:
-                            raise ValueError, err_mess
-                else:
-                    exec "storage.%s = value" % variable
-            else:
-                exec "storage.%s = value" % variable
-    def _store_content(self, location, node, variable, storage):
-        """
-        Get the content of a xpath location and store
-        the result. The value is treated as a string.
-        The xpath location might or might not exist.
-        If it does not exist, nothing is done
-        :param location: xpath location to fetch
-        :param node: node to read the data from
-        :param variable: name of the data member to store it in [string]
-        :param storage: data object that has the 'variable' data member
-        :return: return a list of errors
-        """
-        entry = get_content(location, node)
-        if entry is not None and entry.text is not None:
-            exec "storage.%s = entry.text.strip()" % variable

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SasView

Changeset eda8972 in sasview for src/sans/dataloader

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src/sans/dataloader/readers/cansas_reader.py

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