-                      rb31b7e2
+                      rdbba134
 The graph will update dynamically as the parameter values are changed.
+You can decide your own model categorizations using the :ref:`Category_Manager`.
+.. TODO: uncomment after Category_Manager done
+.. You can decide your own model categorizations using the :ref:`Category_Manager`.
 Once you have selected a model you can read its help documentation by right clicking
 …
 .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
+.. _Category_Manager:
+Category Manager
+----------------
+To change the model categorizations, either choose *Category Manager* from the
+*View* option on the menubar, or click on the *Modify* button on the *Fit Page*.
+.. image:: cat_fig0.png
+The categorization of all models except the user supplied Plugin Models can be
+reassigned, added to, and removed using *Category Manager*. Models can also be
+hidden from view in the drop-down menus.
+.. image:: cat_fig1.png
+Changing category
+^^^^^^^^^^^^^^^^^
+To change category, highlight a model in the list by left-clicking on its entry
+and then click the *Modify* button. Use the *Change Category* panel that appears
+to make the required changes.
+.. image:: cat_fig2.png
+To create a category for the selected model, click the *Add* button. In order
+to delete a category, select the category name and click the *Remove Selected*
+button. Then click *Done*.
+Showing/hiding models
+^^^^^^^^^^^^^^^^^^^^^
+Use the *Enable All / Disable All* buttons and the check boxes beside each model
+to select the models to show/hide. To apply the selection, click *Ok*. Otherwise
+click *Cancel*.
+*NB: It may be necessary to change to a different category and then back again*
+*before any changes take effect.*
+.. TODO: uncomment after Category_Manager done
+..
+  .. _Category_Manager:
+  Category Manager
+  ----------------
+  To change the model categorizations, either choose *Category Manager* from the
+  *View* option on the menubar, or click on the *Modify* button on the *Fit Page*.
+  .. image:: cat_fig0.png
+  The categorization of all models except the user supplied Plugin Models can be
+  reassigned, added to, and removed using *Category Manager*. Models can also be
+  hidden from view in the drop-down menus.
+  .. image:: cat_fig1.png
+  Changing category
+  ^^^^^^^^^^^^^^^^^
+  To change category, highlight a model in the list by left-clicking on its entry
+  and then click the *Modify* button. Use the *Change Category* panel that appears
+  to make the required changes.
+  .. image:: cat_fig2.png
+  To create a category for the selected model, click the *Add* button. In order
+  to delete a category, select the category name and click the *Remove Selected*
+  button. Then click *Done*.
+  Showing/hiding models
+  ^^^^^^^^^^^^^^^^^^^^^
+  Use the *Enable All / Disable All* buttons and the check boxes beside each model
+  to select the models to show/hide. To apply the selection, click *Ok*. Otherwise
+  click *Cancel*.
+  *NB: It may be necessary to change to a different category and then back again*
+  *before any changes take effect.*
+..
 .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
 …
 them in the first place!).
+To tie parameters between the data sets with constraints, check the 'yes' radio button
+next to *Add Constraint?* in the *Fit Constraints* box.
+*NB: You can only constrain parameters that are set to refine.*
+.. image:: constraint_1.png
+To tie parameters between the data sets with constraints, select the data sets and right click.
+From the menu choose *Mutual constraint of parameters in selected models*
+.. image:: constraint_2.png
 When ready, click the *Fit* button on the *Const & Simul Fit* page, NOT the *Fit*
 …
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Use the *Easy Setup* drop-down buttons in the *Const & Simul Fit* page to set
+up constraints between *FitPage*'s.
+In the *Const. & Simul. Fit* page select two data sets which are to be constrained.
+Right clicking in the *Source choice for simultaneous fitting* area will bring up
+the context menu:
+.. image:: constraint_2.png
+Here you can choose datasets for fitting and define constraints between parameters in
+both datasets.
+Selecting this option will bring up the *Complex Constraint* dialog.
+.. image:: complex_constraint.png
 Constraints will generally be of the form
 …
 .. image:: restore_batch_window.png
+Once a batch fit is completed, all model parameters are displayed but *not*
+their uncertainties. To view the uncertainties, click on a given column then
+go to *Edit* in the menu bar, select *Insert Column Before* and choose the
+required data from the list. An empty column can be inserted in the same way.
+To remove a column from the grid, click on the column header and choose
+*Remove Column* under *Edit* in the menu bar. The same functionality also
+allows you to re-order columns.
+*NB: You cannot insert/remove/re-order the rows in the Grid Window.*
+All of the above functions are also available by right-clicking on a column
+label.
+.. image:: edit_menu.png
+*NB: If there is an existing Grid Window and another batch fit is performed,*
+..
+  Once a batch fit is completed, all model parameters are displayed but *not*
+  their uncertainties. To view the uncertainties, click on a given column then
+  go to *Edit* in the menu bar, select *Insert Column Before* and choose the
+  required data from the list. An empty column can be inserted in the same way.
+  To remove a column from the grid, click on the column header and choose
+  *Remove Column* under *Edit* in the menu bar. The same functionality also
+  allows you to re-order columns.
+  *NB: You cannot insert/remove/re-order the rows in the Grid Window.*
+  All of the above functions are also available by right-clicking on a column
+  label.
+  .. image:: edit_menu.png
+..
+If there is an existing Grid Window and another batch fit is performed,*
 *an additional 'Table' tab will be added to the Grid Window.*
 …
 ^^^^^^^^^^^^^^^
+Any column of *numeric* parameter values can be plotted against another using
+the *Grid Window*. Simply select one column at the time and click the *Add*
+button next to the required *X/Y-axis Selection Range* text box. When both
+the X and Y axis boxes have been completed, click the *Plot* button.
+When the *Add* button is clicked, *SasView* also automatically completes the
+*X/Y-axis Label* text box with the heading from Row 1 of the selected table,
+but different labels and units can be entered manually.
+.. image:: plot_button.png
+The *X/Y-axis Selection Range* can be edited manually. The text control box
+recognises the operators +, -, \*, /, or 'pow', and allows the following
+types of expression :
+) if an axis label range is a function of 1 or more *columns*, write
+     this type of expression
+     constant1 * column_name1 [minimum row index :  maximum  row index]
+     operator constant2 * column_name2 [minimum row index :  maximum  row index]
+     Example: radius [2 : 5] -3 * scale [2 : 5]
+) if only some *values* of a given column are needed but the range between
+     the first row and the last row used is not continuous, write this type of
+     expression
+     column_name1 [minimum row index1 :  maximum  row index1] , column_name1
+     [minimum row index2 :  maximum  row index2]
+     Example: radius [2 : 5] , radius [10 : 25]
+..
+  Any column of *numeric* parameter values can be plotted against another using
+  the *Grid Window*. Simply select one column at the time and click the *Add*
+  button next to the required *X/Y-axis Selection Range* text box. When both
+  the X and Y axis boxes have been completed, click the *Plot* button.
+  When the *Add* button is clicked, *SasView* also automatically completes the
+  *X/Y-axis Label* text box with the heading from Row 1 of the selected table,
+  but different labels and units can be entered manually.
+  .. image:: plot_button.png
+  The *X/Y-axis Selection Range* can be edited manually. The text control box
+  recognises the operators +, -, \*, /, or 'pow', and allows the following
+  types of expression :
+) if an axis label range is a function of 1 or more *columns*, write
+      this type of expression
+      constant1 * column_name1 [minimum row index :  maximum  row index]
+      operator constant2 * column_name2 [minimum row index :  maximum  row index]
+      Example: radius [2 : 5] -3 * scale [2 : 5]
+) if only some *values* of a given column are needed but the range between
+      the first row and the last row used is not continuous, write this type of
+      expression
+      column_name1 [minimum row index1 :  maximum  row index1] , column_name1
+      [minimum row index2 :  maximum  row index2]
+      Example: radius [2 : 5] , radius [10 : 25]
+..
+Any row (dataset) can be plotted by selecting it and either right-clicking and choosing
+*Plot selected fits* menu item or by clicking on the *Plot* button.
 .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
 …
 described in :ref:`Loading_data`. Next start up two or more *BatchPage* fits
 following the instructions in :ref:`Batch_Fit_Mode` but **DO NOT PRESS FIT**.
+At this point the *Combine Batch Fit* menu item under the *Fitting menu* should
+be active (if there is one or no *BatchPage* the menu item will be greyed out
+and inactive).  Clicking on *Combine Batch Fit* will bring up a new panel,
+similar to the *Const & Simult Fit* panel. In this case there will be a
+checkbox for each *BatchPage* instead of each *FitPage* that should be included
+in the fit.  Once all are selected, click the Fit button on
+the *BatchPage* to run each batch fit in *sequence*
+.. image:: combine_batch_page.png
+When done, select *Constrained or Simultaneous Fit* under *Fitting* in the menu bar.
+In the *Const & Simul Fit* page that appears, choose *Batch fits* radio button and
+select which data sets are to be  fitted.
+.. image:: simult_batch.png
+Once all are selected, click the Fit button on
+the *Const. Simult. Fitting* to run each batch fit in *sequence*
 The batch table will then pop up at the end as for the case of the simple Batch
 …
    recognized as the same parameter.
+.. image:: combine_batch_grid.png
+In the example shown above the data is a time series with a shifting peak.
+The first part of the series was fitted using the *broad_peak* model, while
+the rest of the data were fit using the *gaussian_peak* model. Unfortunately the
+time is not listed in the file but the file name contains the information. As
+described in :ref:`Grid_Window`, a column can be added manually, in this case
+called time, and the peak position plotted against time.
+.. image:: combine_batch_plot.png
+Note the discontinuity in the peak position.  This reflects the fact that the
+Gaussian fit is a rather poor model for the data and is not actually
+finding the peak.
+.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
+.. note::  This help document was last changed by Paul Butler, 10 September
+..
+  .. image:: combine_batch_grid.png
+  In the example shown above the data is a time series with a shifting peak.
+  The first part of the series was fitted using the *broad_peak* model, while
+  the rest of the data were fit using the *gaussian_peak* model. Unfortunately the
+  time is not listed in the file but the file name contains the information. As
+  described in :ref:`Grid_Window`, a column can be added manually, in this case
+  called time, and the peak position plotted against time.
+  .. image:: combine_batch_plot.png
+  Note the discontinuity in the peak position.  This reflects the fact that the
+  Gaussian fit is a rather poor model for the data and is not actually
+  finding the peak.
+..
+.. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ
+.. note::  This help document was last changed by Piotr Rozyczko, 18 May 2018

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src/sas/qtgui/Perspectives/Fitting/media/fitting_help.rst

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