Changes in sasmodels/models/stacked_disks.py [9802ab3:b7e8b94] in sasmodels

File:

• sasmodels/models/stacked_disks.py (modified) (7 diffs)

sasmodels/models/stacked_disks.py

@@ -58 +58 @@
 and $\sigma_d$ = the Gaussian standard deviation of the d-spacing (*sigma_d*).
 Note that $D\cos(\alpha)$ is the component of $D$ parallel to $q$ and the last
-term in the equation above is effectively a Debye-Waller factor term.
+term in the equation above is effectively a Debye-Waller factor term. 
 
 .. note::
@@ -77 +77 @@
 the axis of the cylinder using two angles $\theta$ and $\varphi$.
 
-.. figure:: img/cylinder_angle_definition.png
+.. figure:: img/cylinder_angle_definition.jpg
 
     Examples of the angles against the detector plane.
@@ -103 +103 @@
 """
 
-from numpy import inf, sin, cos, pi
+from numpy import inf
 
 name = "stacked_disks"
@@ -126 +126 @@
     ["thick_layer", "Ang",        10.0, [0, inf],    "volume",      "Thickness of layer each side of core"],
     ["radius",      "Ang",        15.0, [0, inf],    "volume",      "Radius of the stacked disk"],
-    ["n_stacking",  "",            1.0, [1, inf],    "volume",      "Number of stacked layer/core/layer disks"],
+    ["n_stacking",  "",            1.0, [0, inf],    "volume",      "Number of stacked layer/core/layer disks"],
     ["sigma_d",     "Ang",         0,   [0, inf],    "",            "Sigma of nearest neighbor spacing"],
     ["sld_core",    "1e-6/Ang^2",  4,   [-inf, inf], "sld",         "Core scattering length density"],
     ["sld_layer",   "1e-6/Ang^2",  0.0, [-inf, inf], "sld",         "Layer scattering length density"],
     ["sld_solvent", "1e-6/Ang^2",  5.0, [-inf, inf], "sld",         "Solvent scattering length density"],
-    ["theta",       "degrees",     0,   [-360, 360], "orientation", "Orientation of the stacked disk axis w/respect incoming beam"],
-    ["phi",         "degrees",     0,   [-360, 360], "orientation", "Rotation about beam"],
+    ["theta",       "degrees",     0,   [-inf, inf], "orientation", "Orientation of the stacked disk axis w/respect incoming beam"],
+    ["phi",         "degrees",     0,   [-inf, inf], "orientation", "Orientation of the stacked disk in the plane of the detector"],
     ]
 # pylint: enable=bad-whitespace, line-too-long
@@ -152 +152 @@
 # After redefinition of spherical coordinates -
 # tests had in old coords theta=0, phi=0; new coords theta=90, phi=0
-q = 0.1
-# april 6 2017, rkh added a 2d unit test, assume correct!
-qx = q*cos(pi/6.0)
-qy = q*sin(pi/6.0)
+# but should not matter here as so far all the tests are 1D not 2D
 tests = [
 # Accuracy tests based on content in test/utest_extra_models.py.
-# Added 2 tests with n_stacked = 5 using SasView 3.1.2 - PDB;
-# for which alas q=0.001 values seem closer to n_stacked=1 not 5,
-# changed assuming my 4.1 code OK, RKH
+# Added 2 tests with n_stacked = 5 using SasView 3.1.2 - PDB; for which alas q=0.001 values seem closer to n_stacked=1 not 5, changed assuming my 4.1 code OK, RKH
     [{'thick_core': 10.0,
       'thick_layer': 15.0,
@@ -191 +186 @@
     [{'thick_core': 10.0,
       'thick_layer': 15.0,
-      'radius': 100.0,
-      'n_stacking': 5,
-      'sigma_d': 0.0,
-      'sld_core': 4.0,
-      'sld_layer': -0.4,
-      'solvent_sd': 5.0,
-      'theta': 90.0,
-      'phi': 20.0,
-      'scale': 0.01,
-      'background': 0.001},
-      (qx, qy), 0.0491167089952  ],
-    [{'thick_core': 10.0,
-      'thick_layer': 15.0,
       'radius': 3000.0,
       'n_stacking': 5,
@@ -246 +228 @@
       'background': 0.001,
      }, ([0.4, 0.5]), [0.00105074, 0.00121761]],
-    [{'thick_core': 10.0,
-      'thick_layer': 15.0,
-      'radius': 3000.0,
-      'n_stacking': 1.0,
-      'sigma_d': 0.0,
-      'sld_core': 4.0,
-      'sld_layer': -0.4,
-      'solvent_sd': 5.0,
-      'theta': 90.0,
-      'phi': 20.0,
-      'scale': 0.01,
-      'background': 0.001,
-     }, (qx, qy), 0.0341738733124 ],
 
     [{'thick_core': 10.0,