Changeset 9c0f3c17 in sasview for src/sas/sasgui/perspectives/pr

Timestamp:

Apr 4, 2017 12:50:04 PM (7 years ago)

Author:

Ricardo Ferraz Leal <ricleal@…>

Branches:

master, ESS_GUI, ESS_GUI_Docs, ESS_GUI_batch_fitting, ESS_GUI_bumps_abstraction, ESS_GUI_iss1116, ESS_GUI_iss879, ESS_GUI_iss959, ESS_GUI_opencl, ESS_GUI_ordering, ESS_GUI_sync_sascalc, costrafo411, magnetic_scatt, release-4.2.2, ticket-1009, ticket-1094-headless, ticket-1242-2d-resolution, ticket-1243, ticket-1249, ticket885, unittest-saveload

Children:

f2940c4

Parents:

463e7ffc (diff), 1779e72 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.

Message:

After merge conflict

Location:

src/sas/sasgui/perspectives/pr

Files:

• explore_dialog.py (modified) (2 diffs)
• pr.py (modified) (15 diffs)
• inversion_panel.py (modified) (4 diffs)
• inversion_state.py (modified) (5 diffs)

src/sas/sasgui/perspectives/pr/explore_dialog.py

@@ -19 +19 @@
 
 import wx
-import numpy
+import numpy as np
 import logging
 import sys
@@ -67 +67 @@
 
         step = (self.max - self.min) / (self.npts - 1)
-        self.x = numpy.arange(self.min, self.max + step * 0.01, step)
-        dx = numpy.zeros(len(self.x))
-        y = numpy.ones(len(self.x))
-        dy = numpy.zeros(len(self.x))
+        self.x = np.arange(self.min, self.max + step * 0.01, step)
+        dx = np.zeros(len(self.x))
+        y = np.ones(len(self.x))
+        dy = np.zeros(len(self.x))
 
         # Plot area

src/sas/sasgui/perspectives/pr/pr.py

@@ -21 +21 @@
 import time
 import math
-import numpy
+import numpy as np
 import pylab
 from sas.sasgui.guiframe.gui_manager import MDIFrame
@@ -209 +209 @@
         r = pylab.arange(0.01, d_max, d_max / 51.0)
         M = len(r)
-        y = numpy.zeros(M)
-        pr_err = numpy.zeros(M)
+        y = np.zeros(M)
+        pr_err = np.zeros(M)
 
         total = 0.0
@@ -255 +255 @@
         """
         # Show P(r)
-        y_true = numpy.zeros(len(x))
+        y_true = np.zeros(len(x))
 
         sum_true = 0.0
@@ -309 +309 @@
 
         x = pylab.arange(minq, maxq, maxq / 301.0)
-        y = numpy.zeros(len(x))
-        err = numpy.zeros(len(x))
+        y = np.zeros(len(x))
+        err = np.zeros(len(x))
         for i in range(len(x)):
             value = pr.iq(out, x[i])
@@ -339 +339 @@
         if pr.slit_width > 0 or pr.slit_height > 0:
             x = pylab.arange(minq, maxq, maxq / 301.0)
-            y = numpy.zeros(len(x))
-            err = numpy.zeros(len(x))
+            y = np.zeros(len(x))
+            err = np.zeros(len(x))
             for i in range(len(x)):
                 value = pr.iq_smeared(out, x[i])
@@ -384 +384 @@
         x = pylab.arange(0.0, pr.d_max, pr.d_max / self._pr_npts)
 
-        y = numpy.zeros(len(x))
-        dy = numpy.zeros(len(x))
-        y_true = numpy.zeros(len(x))
+        y = np.zeros(len(x))
+        dy = np.zeros(len(x))
+        y_true = np.zeros(len(x))
 
         total = 0.0
         pmax = 0.0
-        cov2 = numpy.ascontiguousarray(cov)
+        cov2 = np.ascontiguousarray(cov)
 
         for i in range(len(x)):
@@ -482 +482 @@
         """
         # Read the data from the data file
-        data_x = numpy.zeros(0)
-        data_y = numpy.zeros(0)
-        data_err = numpy.zeros(0)
+        data_x = np.zeros(0)
+        data_y = np.zeros(0)
+        data_err = np.zeros(0)
         scale = None
         min_err = 0.0
@@ -506 +506 @@
                         #err = 0
 
-                    data_x = numpy.append(data_x, x)
-                    data_y = numpy.append(data_y, y)
-                    data_err = numpy.append(data_err, err)
+                    data_x = np.append(data_x, x)
+                    data_y = np.append(data_y, y)
+                    data_err = np.append(data_err, err)
                 except:
                     logger.error(sys.exc_value)
@@ -530 +530 @@
         """
         # Read the data from the data file
-        data_x = numpy.zeros(0)
-        data_y = numpy.zeros(0)
-        data_err = numpy.zeros(0)
+        data_x = np.zeros(0)
+        data_y = np.zeros(0)
+        data_err = np.zeros(0)
         scale = None
         min_err = 0.0
@@ -557 +557 @@
                             #err = 0
 
-                        data_x = numpy.append(data_x, x)
-                        data_y = numpy.append(data_y, y)
-                        data_err = numpy.append(data_err, err)
+                        data_x = np.append(data_x, x)
+                        data_y = np.append(data_y, y)
+                        data_err = np.append(data_err, err)
                     except:
                         logger.error(sys.exc_value)
@@ -642 +642 @@
         # Now replot the original added data
         for plot in self._added_plots:
-            self._added_plots[plot].y = numpy.copy(self._default_Iq[plot])
+            self._added_plots[plot].y = np.copy(self._default_Iq[plot])
             wx.PostEvent(self.parent,
                          NewPlotEvent(plot=self._added_plots[plot],
@@ -666 +666 @@
         # Now scale the added plots too
         for plot in self._added_plots:
-            total = numpy.sum(self._added_plots[plot].y)
+            total = np.sum(self._added_plots[plot].y)
             npts = len(self._added_plots[plot].x)
             total *= self._added_plots[plot].x[npts - 1] / npts
@@ -816 +816 @@
         # Save Pr invertor
         self.pr = pr
-        cov = numpy.ascontiguousarray(cov)
+        cov = np.ascontiguousarray(cov)
 
         # Show result on control panel
@@ -984 +984 @@
         all_zeros = True
         if err == None:
-            err = numpy.zeros(len(pr.y))
+            err = np.zeros(len(pr.y))
         else:
             for i in range(len(err)):
@@ -1090 +1090 @@
         # If we have not errors, add statistical errors
         if y is not None:
-            if err == None or numpy.all(err) == 0:
-                err = numpy.zeros(len(y))
+            if err == None or np.all(err) == 0:
+                err = np.zeros(len(y))
                 scale = None
                 min_err = 0.0

src/sas/sasgui/perspectives/pr/inversion_panel.py

@@ -17 +17 @@
 from pr_widgets import OutputTextCtrl
 from sas.sasgui.guiframe.documentation_window import DocumentationWindow
+
+logger = logging.getLogger(__name__)
 
 if sys.platform.count("win32") > 0:
@@ -710 +712 @@
             self.alpha_ctl.SetValue(alpha)
         except ValueError:
-            logging.error("InversionControl._on_accept_alpha got a value that was not a number: %s" % alpha )
+            logger.error("InversionControl._on_accept_alpha got a value that was not a number: %s" % alpha )
         except:
             # No estimate or bad estimate, either do nothing
-            logging.error("InversionControl._on_accept_alpha: %s" % sys.exc_value)
+            logger.error("InversionControl._on_accept_alpha: %s" % sys.exc_value)
 
     def _on_accept_nterms(self, evt):
@@ -726 +728 @@
             self.nfunc_ctl.SetValue(nterms)
         except ValueError:
-            logging.error("InversionControl._on_accept_nterms got a value that was not a number: %s" % nterms )
+            logger.error("InversionControl._on_accept_nterms got a value that was not a number: %s" % nterms )
         except:
             # No estimate or bad estimate, either do nothing
-            logging.error("InversionControl._on_accept_nterms: %s" % sys.exc_value)
+            logger.error("InversionControl._on_accept_nterms: %s" % sys.exc_value)
 
     def clear_panel(self):
@@ -947 +949 @@
             except:
                 msg = "InversionControl._change_file: %s" % sys.exc_value
-                logging.error(msg)
+                logger.error(msg)
 
     def on_help(self, event):

src/sas/sasgui/perspectives/pr/inversion_state.py

@@ -22 +22 @@
 from sas.sascalc.dataloader.readers.cansas_reader import get_content
 
+logger = logging.getLogger(__name__)
+
 PRNODE_NAME = 'pr_inversion'
 CANSAS_NS = "cansas1d/1.0"
@@ -250 +252 @@
                     msg = "InversionState.fromXML: Could not read "
                     msg += "timestamp\n %s" % sys.exc_value
-                    logging.error(msg)
+                    logger.error(msg)
 
             # Parse inversion inputs
@@ -306 +308 @@
                         err_msg += "%d %d" % (len(self.coefficients),
                                               self.nfunc)
-                        logging.error(err_msg)
+                        logger.error(err_msg)
                         self.coefficients = None
 
@@ -343 +345 @@
                         err_msg += " covariance matrix: "
                         err_msg += "%d %d" % (len(self.covariance), self.nfunc)
-                        logging.error(err_msg)
+                        logger.error(err_msg)
                         self.covariance = None
 
@@ -430 +432 @@
             msg = "XML document does not contain P(r) "
             msg += "information.\n %s" % sys.exc_value
-            logging.info(msg)
+            logger.info(msg)
 
         return state