-                      rc1694f8
+                      r7cd87c2
 import string
 import json
+import logging
 from collections import defaultdict
 from wx.lib.scrolledpanel import ScrolledPanel
 …
     ## Title to appear on top of the window
     window_caption = "Fit Page "
     def __init__(self, parent, color='blue', **kwargs):
         """
 …
         #Set window's font size
         self.SetWindowVariant(variant=FONT_VARIANT)
         self.SetBackgroundColour(color)
         ## parent of the page
 …
         self.Npts_fit = None
         self.Npts_total = None
         self.theory_qmin = None
+        self.theory_qmin = None
         self.theory_qmax = None
         self.theory_qmin_x = None
 …
         self.sld_axes = None
         self.multi_factor = None
         self.disp_cb_dict = {}
         #self.state = PageState(parent=parent)
         ## dictionary containing list of models
         self.model_list_box = {}
         ## Data member to store the dispersion object created
         self._disp_obj_dict = {}
 …
         self.disp_list = []
         self.disp_name = ""
         ## list of orientation parameters
         self.orientation_params = []
 …
         ## Create context menu for page
         self.popUpMenu = wx.Menu()
         id = wx.NewId()
         self._keep = wx.MenuItem(self.popUpMenu, id, "Add bookmark",
 …
         wx.EVT_MENU(self, id, self.on_bookmark)
         self.popUpMenu.AppendSeparator()
         ## Default locations
         self._default_save_location = os.getcwd()
 …
         #self.onSave(event=None)
         self.Bind(wx.EVT_CONTEXT_MENU, self.onContextMenu)
         # bind key event
         self.Bind(wx.EVT_LEFT_DOWN, self.on_left_down)
         ## create the basic structure of the panel with empty sizer
         self.define_page_structure()
         ## drawing Initial dispersion parameters sizer
         self.set_dispers_sizer()
         ## layout
         self.set_layout()
     def set_index_model(self, index):
         """
 …
         """
         self.index_model = index
     def create_default_data(self):
         """
 …
                 else:
                     self._create_default_1d_data()
             if self.model != None:
                 if not self.data.is_data:
 …
             self.state.pinhole_smearer = self.pinhole_smearer.GetValue()
             self.state.slit_smearer = self.slit_smearer.GetValue()
     def _create_default_1d_data(self):
         """
 …
         Only when the page is on theory mode.
         :warning: This data is never plotted.
         """
         x = numpy.linspace(start=self.qmin_x, stop=self.qmax_x,
 …
         self.data.id = str(self.uid) + " data"
         self.data.group_id = str(self.uid) + " Model1D"
     def _create_log_1d_data(self):
         """
 …
         Only when the page is on theory mode.
         :warning: This data is never plotted.
         """
         if self.qmin_x >= 1.e-10:
             qmin = numpy.log10(self.qmin_x)
         else:
             qmin = -10.
+            qmin = -10.
         if self.qmax_x <= 1.e10:
             qmax = numpy.log10(self.qmax_x)
         else:
             qmax = 10.
+            qmax = 10.
         x = numpy.logspace(start=qmin, stop=qmax,
                            num=self.npts_x, endpoint=True, base=10.0)
 …
         self.data.id = str(self.uid) + " data"
         self.data.group_id = str(self.uid) + " Model1D"
     def _create_default_2d_data(self):
         """
 …
         #xstep = x_size / len(x_bins - 1)
         #ystep = y_size / len(y_bins - 1)
         self.data.source = Source()
         self.data.data = numpy.ones(len(mask))
 …
             wx.PostEvent(self._manager.parent, PanelOnFocusEvent(panel=self))
             self.on_tap_focus()
     def on_tap_focus(self):
         """
 …
                     self._manager.menu1.FindItemById(self._manager.id_batchfit)
             batch_menu.Enable(self.batch_on and flag)
     class ModelTextCtrl(wx.TextCtrl):
         """
 …
         Binds the appropriate events for user interactions.
         Default callback methods can be overwritten on initialization
         :param kill_focus_callback: callback method for EVT_KILL_FOCUS event
         :param set_focus_callback:  callback method for EVT_SET_FOCUS event
         :param mouse_up_callback:   callback method for EVT_LEFT_UP event
         :param text_enter_callback: callback method for EVT_TEXT_ENTER event
         """
         ## Set to True when the mouse is clicked while whole string is selected
 …
         ## Call back for EVT_SET_FOCUS events
         _on_set_focus_callback = None
         def __init__(self, parent, id=-1,
+        def __init__(self, parent, id= -1,
                      value=wx.EmptyString,
                      pos=wx.DefaultPosition,
 …
                      mouse_up_callback=None,
                      text_enter_callback=None):
             wx.TextCtrl.__init__(self, parent, id, value, pos,
                                   size, style, validator, name)
             # Bind appropriate events
             self._on_set_focus_callback = parent.onSetFocus \
 …
                 self.Bind(wx.EVT_LEFT_UP, self._highlight_text \
                           if mouse_up_callback is None else mouse_up_callback)
         def _on_set_focus(self, event):
             """
             Catch when the text control is set in focus to highlight the whole
             text if necessary
             :param event: mouse event
             """
             event.Skip()
             self.full_selection = True
             return self._on_set_focus_callback(event)
         def _highlight_text(self, event):
             """
             Highlight text of a TextCtrl only of no text has be selected
             :param event: mouse event
             """
             # Make sure the mouse event is available to other listeners
 …
                     if start == end:
                         control.SetSelection(-1, -1)
         def _silent_kill_focus(self, event):
             """
             Save the state of the page
             """
             event.Skip()
             #pass
     def set_page_info(self, page_info):
         """
 …
         ## Data member to store the dispersion object created
         self.populate_box(model_dict=self.model_list_box)
     def onContextMenu(self, event):
         """
 …
         # Skipping the save state functionality for release 0.9.0
         #return
         pos = event.GetPosition()
         pos = self.ScreenToClient(pos)
         self.PopupMenu(self.popUpMenu, pos)
     def onUndo(self, event):
         """
 …
         event = PreviousStateEvent(page=self)
         wx.PostEvent(self.parent, event)
     def onRedo(self, event):
         """
 …
         event = NextStateEvent(page=self)
         wx.PostEvent(self.parent, event)
     def define_page_structure(self):
         """
 …
         self.sizer5 = wx.BoxSizer(wx.VERTICAL)
         self.sizer6 = wx.BoxSizer(wx.VERTICAL)
         self.sizer0.SetMinSize((PANEL_WIDTH, -1))
         self.sizer1.SetMinSize((PANEL_WIDTH, -1))
 …
         self.sizer5.SetMinSize((PANEL_WIDTH, -1))
         self.sizer6.SetMinSize((PANEL_WIDTH, -1))
         self.vbox.Add(self.sizer0)
         self.vbox.Add(self.sizer1)
 …
         self.vbox.Add(self.sizer5)
         self.vbox.Add(self.sizer6)
     def set_layout(self):
         """
 …
         self.SetSizer(self.vbox)
         self.Centre()
     def set_owner(self, owner):
         """
         set owner of fitpage
         :param owner: the class responsible of plotting
         """
         self.event_owner = owner
         self.state.event_owner = owner
     def get_state(self):
         """
         """
         return self.state
     def get_data(self):
         """
 …
         """
         return self.data
     def get_data_list(self):
         """
 …
         """
         return self.data_list
     def set_manager(self, manager):
         """
         set panel manager
         :param manager: instance of plugin fitting
         """
         self._manager = manager
         self.state.manager = manager
     def populate_box(self, model_dict):
         """
         Store list of model
         :param model_dict: dictionary containing list of models
         """
         self.model_list_box = model_dict
         self.state.model_list_box = self.model_list_box
         self.initialize_combox()
     def set_model_dictionary(self, model_dict):
         """
 …
         """
         put default value in the combobox
         """
+        """
         ## fill combox box
         if self.model_list_box is None:
 …
             self.structurebox.Disable()
             self.text2.Disable()
             if self.model.__class__ in self.model_list_box["P(Q)*S(Q)"]:
                 self.structurebox.Show()
 …
                 self.text2.Enable()
     def set_dispers_sizer(self):
         """
 …
                         self.on_pd_help_clicked, id=self.disp_help_bt.GetId())
         self.disp_help_bt.SetToolTipString("Helps for Polydispersion.")
         self.Bind(wx.EVT_RADIOBUTTON, self._set_dipers_Param,
                      id=self.disable_disp.GetId())
 …
         sizer_dispersion.Add((25, 20))
         sizer_dispersion.Add(self.disp_help_bt)
         ## fill a sizer for dispersion
         boxsizer1.Add(sizer_dispersion, 0,
 …
         self.sizer4.Layout()
         self.Layout()
         self.Refresh()
         ## saving the state of enable dispersity button
 …
         self.state.disable_disp = self.disable_disp.GetValue()
         self.SetupScrolling()
     def onResetModel(self, event):
         """
 …
             previous_state = self.saved_states[name]
             ## reset state of checkbox,textcrtl  and  regular parameters value
             self.reset_page(previous_state)
         self.state.m_name = self.m_name
         self.Show(True)
     def on_preview(self, event):
         """
 …
         # get the report dialog
         self.state.report(images, canvases)
     def on_save(self, event):
         """
 …
             path = dlg.GetPath()
             self._default_save_location = os.path.dirname(path)
             self._manager.parent._default_save_location =\
+            self._manager.parent._default_save_location = \
                                  self._default_save_location
         else:
 …
         self._manager.save_fit_state(filepath=fName, fitstate=new_state)
         return new_state
     def on_copy(self, event):
         """
 …
             wx.CallAfter(self.get_copy)
     def on_paste(self, event):
         """
 …
         # messages depending on the flag
         #self._copy_info(True)
     def _copy_info(self, flag):
         """
         Send event dpemding on flag
         : Param flag: flag that distinguish event
         """
 …
         wx.PostEvent(self._manager.parent,
                     StatusEvent(status=msg, info=infor))
     def _get_time_stamp(self):
         """
 …
         current_date = str(month) + "/" + str(day) + "/" + str(year)
         return current_time, current_date
     def on_bookmark(self, event):
         """
 …
         name += "bookmarked at %s on %s" % (current_time, current_date)
         self.saved_states[name] = new_state
         ## Add item in the context menu
         msg = "Model saved at %s on %s" % (current_time, current_date)
 …
         msg += " Saved! right click on this page to retrieve this model"
         wx.PostEvent(self._manager.parent, StatusEvent(status=msg))
         id = wx.NewId()
         self.popUpMenu.Append(id, name, str(msg))
 …
                                          hint=str(msg),
                                          handler=self._back_to_bookmark))
     def _back_to_bookmark(self, event):
         """
 …
         self.onResetModel(event)
         self._draw_model()
     def onSetFocus(self, evt):
         """
 …
         """
         return
     def read_file(self, path):
         """
         Read two columns file
         :param path: the path to the file to read
         """
         try:
             if path == None:
                 wx.PostEvent(self._manager.parent,
                             StatusEvent(status= \
+                            StatusEvent(status=\
                             " Selected Distribution was not loaded: %s" % path))
                 return None, None
 …
                 except:
                     # Skip non-data lines
                     pass
+                    logging.error(sys.exc_value)
             return numpy.array(angles), numpy.array(weights)
         except:
 …
         """
         return self.state.clone()
     def save_current_state(self):
         """
 …
             self.state.disp_list = copy.deepcopy(self.disp_list)
             self.state.model = self.model.clone()
             #model combobox: complex code because of mac's silent error
             if self.structurebox != None:
 …
                 self.state.categorycombobox = self.categorybox.\
                 GetString(cb_select)
         self.state.enable2D = copy.deepcopy(self.enable2D)
         self.state.values = copy.deepcopy(self.values)
 …
             self.state.enable_disp = self.enable_disp.GetValue()
             self.state.disable_disp = self.disable_disp.GetValue()
         self.state.smearer = copy.deepcopy(self.current_smearer)
         if hasattr(self, "enable_smearer"):
 …
         self.state.dxw = copy.deepcopy(self.dxw)
         self.state.slit_smearer = copy.deepcopy(self.slit_smearer.GetValue())
         if len(self._disp_obj_dict) > 0:
             for k, v in self._disp_obj_dict.iteritems():
 …
         ## save plotting range
         self._save_plotting_range()
         self.state.orientation_params = []
         self.state.orientation_params_disp = []
 …
         self._copy_parameters_state(self.orientation_params_disp,
                                      self.state.orientation_params_disp)
         self._copy_parameters_state(self.parameters, self.state.parameters)
         self._copy_parameters_state(self.fittable_param,
 …
         #save chisqr
         self.state.tcChi = self.tcChi.GetValue()
     def save_current_state_fit(self):
         """
 …
         if hasattr(self, "engine_type"):
             self.state.engine_type = copy.deepcopy(self.engine_type)
         self.state.enable2D = copy.deepcopy(self.enable2D)
         self.state.values = copy.deepcopy(self.values)
 …
         ## save data
         self.state.data = copy.deepcopy(self.data)
         if hasattr(self, "enable_disp"):
             self.state.enable_disp = self.enable_disp.GetValue()
             self.state.disable_disp = self.disable_disp.GetValue()
         self.state.smearer = copy.deepcopy(self.current_smearer)
         if hasattr(self, "enable_smearer"):
 …
             self.state.disable_smearer = \
                                 copy.deepcopy(self.disable_smearer.GetValue())
         self.state.pinhole_smearer = \
                                 copy.deepcopy(self.pinhole_smearer.GetValue())
 …
                 for k, v in self._disp_obj_dict.iteritems():
                     self.state._disp_obj_dict[k] = v
             self.state.values = copy.deepcopy(self.values)
             self.state.weights = copy.deepcopy(self.weights)
         ## save plotting range
         self._save_plotting_range()
         ## save checkbutton state and txtcrtl values
         self._copy_parameters_state(self.orientation_params,
 …
                                              self.state.fittable_param)
         self._copy_parameters_state(self.fixed_param, self.state.fixed_param)
     def check_invalid_panel(self):
         """
 …
             wx.MessageBox(msg, 'Info')
             return  True
     def set_model_state(self, state):
         """
 …
         self.disp_cb_dict = state.disp_cb_dict
         self.disp_list = state.disp_list
         ## set the state of the radio box
         #self.shape_rbutton.SetValue(state.shape_rbutton)
 …
         #self.struct_rbutton.SetValue(state.struct_rbutton)
         #self.plugin_rbutton.SetValue(state.plugin_rbutton)
         ## fill model combobox
         self._show_combox_helper()
 …
                     category_pos = int(ind_cat)
                     break
         self.categorybox.Select(category_pos)
         try:
 …
                     formfactor_pos = int(ind_form)
                     break
         self.formfactorbox.Select(formfactor_pos)
         try:
             # to support older version
 …
                     structfactor_pos = int(ind_struct)
                     break
         self.structurebox.SetSelection(structfactor_pos)
         if state.multi_factor != None:
             self.multifactorbox.SetSelection(state.multi_factor)
         ## reset state of checkbox,textcrtl  and  regular parameters value
         self._reset_parameters_state(self.orientation_params_disp,
 …
         self.enable_disp.SetValue(state.enable_disp)
         self.disable_disp.SetValue(state.disable_disp)
         if hasattr(self, "disp_box") and self.disp_box != None:
             self.disp_box.SetSelection(state.disp_box)
 …
             self._set_dipers_Param(event=None)
             if name == "ArrayDispersion":
                 for item in self.disp_cb_dict.keys():
                     if hasattr(self.disp_cb_dict[item], "SetValue"):
                         self.disp_cb_dict[item].SetValue(\
 …
                             else:
                                 self._reset_dispersity()
                         self._disp_obj_dict[item] = disp_model
                         # Set the new model as the dispersion object
                         #for the selected parameter
                         self.model.set_dispersion(item, disp_model)
                         self.model._persistency_dict[item] = \
                                                 [state.values, state.weights]
             else:
                 keys = self.model.getParamList()
 …
         self.pinhole_smearer.SetValue(state.pinhole_smearer)
         self.slit_smearer.SetValue(state.slit_smearer)
         self.dI_noweight.SetValue(state.dI_noweight)
         self.dI_didata.SetValue(state.dI_didata)
         self.dI_sqrdata.SetValue(state.dI_sqrdata)
         self.dI_idata.SetValue(state.dI_idata)
         ## we have two more options for smearing
         if self.pinhole_smearer.GetValue():
 …
         elif self.slit_smearer.GetValue():
             self.onSlitSmear(event=None)
         ## reset state of checkbox,textcrtl  and dispersity parameters value
         self._reset_parameters_state(self.fittable_param, state.fittable_param)
         self._reset_parameters_state(self.fixed_param, state.fixed_param)
         ## draw the model with previous parameters value
         self._onparamEnter_helper()
 …
         self._lay_out()
         self.Refresh()
     def reset_page_helper(self, state):
         """
         Use page_state and change the state of existing page
         :precondition: the page is already drawn or created
         :postcondition: the state of the underlying data change as well as the
             state of the graphic interface
 …
         else:
             self.set_data(data)
         self.enable2D = state.enable2D
         try:
 …
         self.disp_cb_dict = state.disp_cb_dict
         self.disp_list = state.disp_list
         ## set the state of the radio box
         #self.shape_rbutton.SetValue(state.shape_rbutton)
 …
         #self.struct_rbutton.SetValue(state.struct_rbutton)
         #self.plugin_rbutton.SetValue(state.plugin_rbutton)
         ## fill model combobox
         self._show_combox_helper()
 …
                     category_pos = int(ind_cat)
                     break
         self.categorybox.Select(category_pos)
         self._show_combox(None)
 …
                     formfactor_pos = int(ind_form)
                     break
         self.formfactorbox.Select(formfactor_pos)
         try:
             # to support older version
 …
                     structfactor_pos = int(ind_struct)
                     break
         self.structurebox.SetSelection(structfactor_pos)
 …
         #draw the pnael according to the new model parameter
         self._on_select_model(event=None)
         # take care of 2D button
         if data == None and self.model_view.IsEnabled():
 …
                 self.model_view.SetLabel("1D Mode")
         # else:
         if self._manager != None and self.engine_type != None:
             self._manager._on_change_engine(engine=self.engine_type)
         ## set the select all check box to the a given state
         self.cb1.SetValue(state.cb1)
         ## reset state of checkbox,textcrtl  and  regular parameters value
         self._reset_parameters_state(self.orientation_params_disp,
 …
             self.dI_sqrdata.SetValue(False)
             self.dI_idata.SetValue(False)
         ## we have two more options for smearing
         if self.pinhole_smearer.GetValue():
 …
                 self.smear_slit_height.SetValue(str(self.dxl))
             if self.dxw != None:
                 self.smear_slit_width.SetValue(str(self.dxw))
+                self.smear_slit_width.SetValue(str(self.dxw))
             else:
                 self.smear_slit_width.SetValue('')
+                self.smear_slit_width.SetValue('')
             self.onSlitSmear(event=None)
         ## reset state of checkbox,textcrtl  and dispersity parameters value
         self._reset_parameters_state(self.fittable_param, state.fittable_param)
         self._reset_parameters_state(self.fixed_param, state.fixed_param)
         ## draw the model with previous parameters value
         self._onparamEnter_helper()
 …
         ## reset context menu items
         self._reset_context_menu()
         ## set the value of the current state to the state given as parameter
         self.state = state.clone()
         self.state.m_name = self.m_name
     def _reset_page_disp_helper(self, state):
         """
 …
         self.values = copy.deepcopy(state.values)
         self.weights = copy.deepcopy(state.weights)
         for key, disp in state._disp_obj_dict.iteritems():
             # From saved file, disp_model can not be sent in model obj.
 …
                                  [state.values, state.weights]
             except:
                 pass
+                logging.error(sys.exc_value)
             selection = self._find_polyfunc_selection(disp_model)
             for list in self.fittable_param:
 …
                             list[6].Disable()
                         except:
                             pass
+                            logging.error(sys.exc_value)
             # For array, disable all fixed params
             if selection == 1:
 …
                             item[2].Disable()
                         except:
                             pass
+                            logging.error(sys.exc_value)
         # Make sure the check box updated when all checked
         if self.cb1.GetValue():
             self.select_all_param(None)
     def _selectDlg(self):
         """
         open a dialog file to selected the customized dispersity
+        open a dialog file to selected the customized dispersity
         """
         if self.parent != None:
 …
             self.popUpMenu.Append(id, name, msg)
             wx.EVT_MENU(self, id, self.onResetModel)
     def _reset_plotting_range(self, state):
         """
 …
         self.state.formfactorcombobox = self.formfactorbox.GetLabel()
         self.state.categorycombobox = self.categorybox.GetLabel()
         ## post state to fit panel
         event = PageInfoEvent(page=self)
         wx.PostEvent(self.parent, event)
     def _save_plotting_range(self):
         """
 …
         self.state.qmax = self.qmax_x
         self.state.npts = self.npts_x
     def _onparamEnter_helper(self):
         """
 …
                                                       is_modified)
             except:
                 pass
+                logging.error(sys.exc_value)
             # Here we should check whether the boundaries have been modified.
 …
                     self.qmax_x = tempmax
                     is_modified = True
                 if is_2Ddata:
                     # set mask
                     is_modified = self._validate_Npts()
             else:
                 self.fitrange = False
             if not self.data.is_data:
                 is_modified = True
 …
                 self.Refresh()
         return is_modified
     def _update_paramv_on_fit(self):
         """
 …
             msg += " model or Fitting range is not valid!!!  "
             wx.PostEvent(self._manager.parent, StatusEvent(status=msg))
         try:
             self.save_current_state()
         except:
             pass
+            logging.error(sys.exc_value)
         return flag
     def _is_modified(self, is_modified):
         """
 …
         """
         return is_modified
     def _reset_parameters_state(self, listtorestore, statelist):
         """
 …
                 item_page[5].Show(item_page_info[5][0])
                 item_page[5].SetValue(item_page_info[5][1])
             if item_page[6] != None:
                 ## show of hide the text crtl for fitting error
                 item_page[6].Show(item_page_info[6][0])
                 item_page[6].SetValue(item_page_info[6][1])
     def _reset_strparam_state(self, listtorestore, statelist):
         """
 …
         listtorestore = copy.deepcopy(statelist)
         for j in range(len(listtorestore)):
             item_page = listtorestore[j]
             item_page_info = statelist[j]
             ##change the state of the check box for simple parameters
             if item_page[0] != None:
                 item_page[0].SetValue(format_number(item_page_info[0], True))
 …
                 item_page[2].SetValue(selection)
                 self.model.setParam(param_name, selection)
     def _copy_parameters_state(self, listtocopy, statelist):
         """
         copy the state of button
         :param listtocopy: the list of check button to copy
         :param statelist: list of state object to store the current state
         """
         if len(listtocopy) == 0:
             return
         for item in listtocopy:
             checkbox_state = None
             if item[0] != None:
 …
                 error_value = item[4].GetValue()
                 error_state = item[4].IsShown()
             min_value = None
             min_state = None
 …
                 min_value = item[5].GetValue()
                 min_state = item[5].IsShown()
             max_value = None
             max_state = None
 …
             if item[7] != None:
                 unit = item[7].GetLabel()
             statelist.append([checkbox_state, parameter_name, parameter_value,
                               static_text, [error_state, error_value],
                               [min_state, min_value],
                               [max_state, max_value], unit])
     def _draw_model(self, update_chisqr=True, source='model'):
         """
 …
         The method will use the data member from the model page
         to build a call to the fitting perspective manager.
         :param chisqr: update chisqr value [bool]
         """
         wx.CallAfter(self._draw_model_after, update_chisqr, source)
     def _draw_model_after(self, update_chisqr=True, source='model'):
         """
 …
         The method will use the data member from the model page
         to build a call to the fitting perspective manager.
         :param chisqr: update chisqr value [bool]
         """
 …
                                     source='model',
                                     weight=weight)
     def _on_show_sld(self, event=None):
         """
 …
         sld_data.name = 'SLD'
         sld_data.axes = self.sld_axes
         self.panel = SLDPanel(self, data=sld_data, axes=self.sld_axes, id=-1)
+        self.panel = SLDPanel(self, data=sld_data, axes=self.sld_axes, id= -1)
         self.panel.ShowModal()
     def _set_multfactor_combobox(self, multiplicity=10):
         """
 …
             self.multifactorbox.Append(str(idx), int(idx))
         self._hide_multfactor_combobox()
     def _show_multfactor_combobox(self):
         """
 …
         if not self.multifactorbox.IsShown():
             self.multifactorbox.Show(True)
     def _hide_multfactor_combobox(self):
         """
 …
         if self.multifactorbox.IsShown():
             self.multifactorbox.Hide()
     def formfactor_combo_init(self):
         """
 …
         """
         self._show_combox(None)
     def _show_combox_helper(self):
         """
 …
                          StatusEvent(status=msg, info="error"))
         self._populate_box(self.formfactorbox, m_list)
     def _on_modify_cat(self, event=None):
         self._manager.parent.on_category_panel(event)
+    def _on_modify_cat(self, event=None):
+        self._manager.parent.on_category_panel(event)
     def _show_combox(self, event=None):
         """
 …
         self.Layout()
         self.Refresh()
     def _populate_box(self, combobox, list):
         """
         fill combox box with dict item
         :param list: contains item to fill the combox
             item must model class
 …
                     name = model.name
                 mlist.append((name, models))
         # Sort the models
         mlist_sorted = sorted(mlist)
 …
             combobox.Append(item[0], item[1])
         return 0
     def _onQrangeEnter(self, event):
         """
         Check validity of value enter in the Q range field
         """
         tcrtl = event.GetEventObject()
 …
             self.create_default_data()
         self._draw_model()
     def _theory_qrange_enter(self, event):
         """
         Check validity of value enter in the Q range field
         """
         tcrtl = event.GetEventObject()
         #Clear msg if previously shown.
 …
         self.create_default_data()
         self._draw_model()
     def _on_select_model_helper(self):
         """
 …
             self.structurebox.Enable()
             self.text2.Enable()
         if form_factor != None:
             # set multifactor for Mutifunctional models
 …
                     # default value
                     m_id = 1
                 self.multi_factor = self.multifactorbox.GetClientData(m_id)
                 if self.multi_factor == None:
 …
             self.show_sld_button.Hide()
             self.multi_factor = None
         s_id = self.structurebox.GetCurrentSelection()
         struct_factor = self.structurebox.GetClientData(s_id)
         if  struct_factor != None:
             from sas.models.MultiplicationModel import MultiplicationModel
 …
         # check if model has magnetic parameters
         if len(self.model.magnetic_params) > 0:
             self._has_magnetic = True
+            self._has_magnetic = True
         else:
             self._has_magnetic = False
+            self._has_magnetic = False
         ## post state to fit panel
         self.state.parameters = []
 …
         self.on_set_focus(None)
         self.Layout()
     def _validate_qrange(self, qmin_ctrl, qmax_ctrl):
         """
         Verify that the Q range controls have valid values
         and that Qmin < Qmax.
         :param qmin_ctrl: text control for Qmin
         :param qmax_ctrl: text control for Qmax
         :return: True is the Q range is value, False otherwise
         """
         qmin_validity = check_float(qmin_ctrl)
 …
                 return False
         return True
     def _validate_Npts(self):
         """
 …
                 self.Npts_fit.SetValue(str(len(index_data[index_data == True])))
                 self.fitrange = True
         return flag
 …
                 self.Npts_fit.SetValue(str(len(index_data[index_data == True])))
                 self.fitrange = True
         return flag
     def _check_value_enter(self, list, modified):
         """
 …
             #try:
             name = str(item[1])
             if string.find(name, ".npts") == -1 and \
                                         string.find(name, ".nsigmas") == -1:
 …
                 param_min = None
                 param_max = None
                 ## check minimun value
                 if item[5] != None and item[5] != "":
 …
                                 if numpy.isfinite(param_min):
                                     item[2].SetValue(format_number(param_min))
                             item[5].SetBackgroundColour(wx.WHITE)
                             item[2].SetBackgroundColour(wx.WHITE)
                         except:
                             msg = "Wrong fit parameter range entered"
 …
                                 if numpy.isfinite(param_max):
                                     item[2].SetValue(format_number(param_max))
                             item[6].SetBackgroundColour(wx.WHITE)
                             item[2].SetBackgroundColour(wx.WHITE)
 …
                             raise ValueError, msg
                         is_modified = True
                 if param_min != None and param_max != None:
                     if not self._validate_qrange(item[5], item[6]):
 …
                         wx.PostEvent(self._manager.parent,
                                      StatusEvent(status=msg))
                 if name in self.model.details.keys():
                     self.model.details[name][1:3] = param_min, param_max
 …
                 msg = "Wrong Fit parameter value entered "
                 wx.PostEvent(self._manager.parent, StatusEvent(status=msg))
         return is_modified
     def _set_dipers_Param(self, event):
         """
 …
         self._reset_dispersity()
         if self.model == None:
             self.model_disp.Hide()
 …
         if self.enable_disp.GetValue():
             ## layout for model containing no dispersity parameters
             self.disp_list = self.model.getDispParamList()
             if len(self.disp_list) == 0 and len(self.disp_cb_dict) == 0:
                 self._layout_sizer_noDipers()
 …
         else:
             self.sizer4_4.Clear(True)
         ## post state to fit panel
         self.save_current_state()
 …
         self.Layout()
         self.Refresh()
     def _layout_sizer_noDipers(self):
         """
 …
         self.fixed_param = []
         self.orientation_params_disp = []
         self.sizer4_4.Clear(True)
         text = "No polydispersity available for this model"
 …
         self.sizer4_4.Layout()
         self.sizer4.Layout()
     def _reset_dispersity(self):
         """
 …
                 if item in self.param_toFit:
                     self.param_toFit.remove(item)
         self.fittable_param = []
         self.fixed_param = []
 …
         self.values = {}
         self.weights = {}
         from sas.models.dispersion_models import GaussianDispersion
         if len(self.disp_cb_dict) == 0:
 …
                 # Go back to Gaussian model (with 0 pts)
                 disp_model = GaussianDispersion()
                 self._disp_obj_dict[p] = disp_model
                 # Set the new model as the dispersion object
 …
                     self.model.set_dispersion(p, disp_model)
                 except:
+                    pass
+                    logging.error(sys.exc_value)
         ## save state into
 …
         self.Layout()
         self.Refresh()
     def _on_select_Disp(self, event):
         """
 …
         event = PageInfoEvent(page=self)
         wx.PostEvent(self.parent, event)
         self.sizer4_4.Layout()
         self.sizer4.Layout()
         self.SetupScrolling()
     def _on_disp_func(self, event=None):
         """
         Select a distribution function for the polydispersion
         :Param event: ComboBox event
         """
 …
             disp_name = disp_box.GetValue()
             dispersity = disp_box.GetClientData(selection)
             #disp_model =  GaussianDispersion()
             disp_model = dispersity()
 …
                 self.model.set_dispersion(param_name, disp_model)
                 self.state._disp_obj_dict[name1] = disp_model
                 value1 = str(format_number(self.model.getParam(name1), True))
                 value2 = str(format_number(self.model.getParam(name2)))
 …
             for item in self.fixed_param:
                 if item[1] == name2:
                     item[2].SetValue(value2)
+                    item[2].SetValue(value2)
                     # Disable Npts for array
                     if disp_name.lower() == "array":
 …
                     else:
                         item[2].Enable()
             # Make sure the check box updated when all checked
             if self.cb1.GetValue():
 …
             wx.PostEvent(self._manager.parent,
                          StatusEvent(status=msg, info="error"))
     def _set_array_disp(self, name=None, disp=None):
         """
         Set array dispersion
         :param name: name of the parameter for the dispersion to be set
         :param disp: the polydisperion object
 …
         self._default_save_location = os.path.dirname(path)
         if self._manager != None:
             self._manager.parent._default_save_location =\
+            self._manager.parent._default_save_location = \
                              self._default_save_location
         basename = os.path.basename(path)
         values, weights = self.read_file(path)
         # If any of the two arrays is empty, notify the user that we won't
         # proceed
 …
                                     values=values, weights=weights)
         return basename
     def _set_array_disp_model(self, name=None, disp=None,
                               values=[], weights=[]):
         """
         Set array dispersion model
         :param name: name of the parameter for the dispersion to be set
         :param disp: the polydisperion object
 …
         self.state.model._persistency_dict[name.split('.')[0]] = \
                                         [values, weights]
     def _del_array_values(self, name=None):
         """
         Reset array dispersion
         :param name: name of the parameter for the dispersion to be set
         """
 …
             del self.state.model._persistency_dict[name.split('.')[0]]
         except:
             pass
+            logging.error(sys.exc_value)
     def _lay_out(self):
         """
         returns self.Layout
         :Note: Mac seems to like this better when self.
             Layout is called after fitting.
 …
         self.Layout()
         return
     def _sleep4sec(self):
         """
 …
         if ON_MAC == True:
             time.sleep(1)
     def _find_polyfunc_selection(self, disp_func=None):
         """
         FInd Comboox selection from disp_func
         :param disp_function: dispersion distr. function
         """
 …
         except:
             return 3
     def on_reset_clicked(self, event):
         """
 …
             flag = False
             return
         elif self.data.__class__.__name__ == "Data2D":
             data_min = 0
 …
             y = max(math.fabs(self.data.ymin), math.fabs(self.data.ymax))
             self.qmin_x = data_min
             self.qmax_x = math.sqrt(x*x + y*y)
+            self.qmax_x = math.sqrt(x * x + y * y)
             #self.data.mask = numpy.ones(len(self.data.data),dtype=bool)
             # check smearing
 …
                 else:
                     flag = True
         elif self.data == None:
             self.qmin_x = _QMIN_DEFAULT
 …
             self.num_points = _NPTS_DEFAULT
             self.state.npts = self.num_points
         elif self.data.__class__.__name__ != "Data2D":
             self.qmin_x = min(self.data.x)
 …
         else:
             flag = False
         if flag == False:
             msg = "Cannot Plot :Must enter a number!!!  "
 …
         self.state.qmin = self.qmin_x
         self.state.qmax = self.qmax_x
         #reset the q range values
         self._reset_plotting_range(self.state)
         self._draw_model()
     def select_log(self, event):
         """
 …
         """
         Get the images of the plots corresponding this panel for report
         : return graphs: list of figures
         : Need Move to guiframe
 …
                         # append to the list
                         graphs.append(item2.figure)
                         canvases.append(item2.canvas)
+                        canvases.append(item2.canvas)
             except:
                 # Not for control panels
                 pass
+                logging.error(sys.exc_value)
         # Make sure the resduals plot goes to the last
         if res_item != None:
 …
         """
         Function called when 'Help' button is pressed next to model
         of interest.  This calls DocumentationWindow from
+        of interest.  This calls DocumentationWindow from
         documentation_window.py. It will load the top level of the model
         help documenation sphinx generated html if no model is presented.
 …
         accessible because webbrowser module does not pass anything after
         the # to the browser.
         :param evt: on Help Button pressed event
         """
 …
             name = self.formfactorbox.GetValue()
         if self.model != None:
             _docspath='user/models/model_functions.html#' + name
+        if self.model != None:
+            _docspath = 'user/models/model_functions.html#' + name
             _doc_viewer = DocumentationWindow(self, -1, _docspath, name + "Help")
         else:
 …
         behaved model is encountered which has no description then it will
         give the message that none is available.
         :param evt: on Description Button pressed event
         """
 …
             wx.MessageBox(msg, info)
     def _on_mag_help(self, event):
         """
         Bring up Magnetic Angle definition bmp image whenever the ? button
         is clicked. Calls DocumentationWindow with the path of the location
         within the documentation tree (after /doc/ ....". When using old
+    def _on_mag_help(self, event):
+        """
+        Bring up Magnetic Angle definition bmp image whenever the ? button
+        is clicked. Calls DocumentationWindow with the path of the location
+        within the documentation tree (after /doc/ ....". When using old
         versions of Wx (i.e. before 2.9 and therefore not part of release
         versions distributed via installer) it brings up an image viewer
         box which allows the user to click through the rest of the images in
+        box which allows the user to click through the rest of the images in
         the directory.  Not ideal but probably better than alternative which
         would bring up the entire discussion of how magnetic models work?
+        would bring up the entire discussion of how magnetic models work?
         Specially since it is not likely to be accessed.  The normal release
         versions bring up the normal image box.
         :param evt: Triggers on clicking ? in Magnetic Angles? box
         """
         _TreeLocation = "_images/M_angles_pic.bmp"
         _doc_viewer = DocumentationWindow(self, -1, \
              _TreeLocation,"Magnetic Angle Defintions")
     def _on_mag_on(self, event):
+             _TreeLocation, "Magnetic Angle Defintions")
+    def _on_mag_on(self, event):
         """
         Magnetic Parameters ON/OFF
 …
                     #reset mag value to zero fo safety
                     self.model.setParam(key, 0.0)
         self.Show(False)
+        self.Show(False)
         self.set_model_param_sizer(self.model)
         #self._set_sizer_dispersion()
 …
         self.SetupScrolling()
         self.Show(True)
     def on_pd_help_clicked(self, event):
         """
         Bring up Polydispersity Documentation whenever the ? button is clicked.
+        Bring up Polydispersity Documentation whenever the ? button is clicked.
         Calls DocumentationWindow with the path of the location within the
         documentation tree (after /doc/ ....".  Note that when using old
         versions of Wx (before 2.9) and thus not the release version of
         istallers, the help comes up at the top level of the file as
+        documentation tree (after /doc/ ....".  Note that when using old
+        versions of Wx (before 2.9) and thus not the release version of
+        istallers, the help comes up at the top level of the file as
         webbrowser does not pass anything past the # to the browser when it is
         running "file:///...."
         :param evt: Triggers on clicking ? in polydispersity box
         """
         _TreeLocation = "user/perspectives/fitting/fitting_help.html"
         _TreeLocation += "#polydispersity-distributions"
         _doc_viewer = DocumentationWindow(self, -1, \
              _TreeLocation,"Polydispersity Help")
+             _TreeLocation, "Polydispersity Help")
     def on_left_down(self, event):
         """
 …
         # make event free
         event.Skip()
     def get_copy(self):
         """
 …
         self._copy_info(flag)
         return flag
     def get_copy_params(self):
         """
 …
         # Do it if params exist
         if  self.parameters != []:
             # go through the parameters
             strings = self._get_copy_helper(self.parameters,
                                            self.orientation_params)
             content += strings
             # go through the fittables
             strings = self._get_copy_helper(self.fittable_param,
 …
                                            self.orientation_params_disp)
             content += strings
             # go through the str params
             strings = self._get_copy_helper(self.str_parameters,
 …
                 content += param[1] #parameter name
                 content += tab
                 content += param[1]+"_err"
+                content += param[1] + "_err"
                 content += tab
 …
             for param in self.parameters:
                 content += param[2].GetValue() #value
                 content +=tab
+                content += tab
                 content += param[4].GetValue() #error
                 content +=tab
+                content += tab
             return content
 …
             for index, param in enumerate(self.parameters):
                 content += param[1].replace('_','\_') #parameter name
+                content += param[1].replace('_', '\_') #parameter name
                 content += ' & '
                 content += param[1].replace('_','\_')+"\_err"
                 if index < len(self.parameters)-1:
+                content += param[1].replace('_', '\_') + "\_err"
+                if index < len(self.parameters) - 1:
                     content += ' & '
             content += '\\\\ \\hline'
 …
                 content += ' & '
                 content += param[4].GetValue() #parameter error
                 if index < len(self.parameters)-1:
+                if index < len(self.parameters) - 1:
                     content += ' & '
             content += '\\\\ \\hline'
 …
             return True
         return None
     def _get_copy_helper(self, param, orient_param):
         """
         Helping get value and name of the params
         : param param:  parameters
         : param orient_param = oritational params
 …
                     disfunc = str(item[7].GetValue())
             except:
                 pass
+                logging.error(sys.exc_value)
             # 2D
             if self.data.__class__.__name__ == "Data2D":
 …
             # add to the content
             if disfunc != '':
                 disfunc = ',' + disfunc
             # Need to support array func for copy/paste
 …
                         disfunc += ' ' + str(weight)
             except:
                 pass
+                logging.error(sys.exc_value)
             content += name + ',' + str(check) + ',' + value + disfunc + ':'
         return content
     def get_clipboard(self):
         """
 …
             wx.TheClipboard.Close()
         return text
     def get_paste(self):
         """
 …
         self._copy_info(flag)
         return flag
     def get_paste_params(self, text=''):
         """
 …
                     val = [float(a_val) for a_val in array_values[1:]]
                     weit = [float(a_weit) for a_weit in array_weights[1:]]
                     context[name].append(val)
                     context[name].append(weit)
 …
             self._get_paste_helper(self.fixed_param,
                                    self.orientation_params_disp, context)
             # go through the str params
             self._get_paste_helper(self.str_parameters,
                                    self.orientation_params, context)
             return True
         return None
     def _get_paste_helper(self, param, orient_param, content):
         """
         Helping set values of the params
         : param param:  parameters
         : param orient_param: oritational params
 …
                             fun_val = self.model.fun_list[content[name][1]]
                             self.model.setParam(name, fun_val)
                     value = content[name][1:]
                     self._paste_poly_help(item, value)
 …
                         if is_true != None:
                             item[0].SetValue(is_true)
     def _paste_poly_help(self, item, value):
         """
         Helps get paste for poly function
         :param item: Gui param items
         :param value: the values for parameter ctrols
 …
                             is_array = True
                 except:
                     pass
+                    logging.error(sys.exc_value)
                 if not is_array:
                     self._disp_obj_dict[name] = disp_model
 …
                                             [self.state.values,
                                              self.state.weights]
             except:
+                logging.error(sys.exc_value)
                 print "Error in BasePage._paste_poly_help: %s" % sys.exc_value
     def _set_disp_array_cb(self, item):
         """
 …
         item[6].SetValue('')
         item[6].Enable(False)
     def update_pinhole_smear(self):
         """
 …
             if not os.path.isfile(categorization_file):
                 categorization_file = CategoryInstaller.get_default_file()
             cat_file = open(categorization_file, 'rb')
+            cat_file = open(categorization_file, 'rb')
             self.master_category_dict = json.load(cat_file)
             self._regenerate_model_dict()
 …
     def _regenerate_model_dict(self):
         """
         regenerates self.by_model_dict which has each model name as the
+        regenerates self.by_model_dict which has each model name as the
         key and the list of categories belonging to that model
         along with the enabled mapping
 …
                 self.by_model_dict[model].append(category)
                 self.model_enabled_dict[model] = enabled
     def _populate_listbox(self):
         """
 …
         if not uncat_str in cat_list:
             cat_list.append(uncat_str)
         for category in cat_list:
             if category != '':
 …
             self.categorybox.SetSelection(0)
         else:
             self.categorybox.SetSelection( \
+            self.categorybox.SetSelection(\
                 self.categorybox.GetSelection())
 …
         else:
             for (model,enabled) in sorted(self.master_category_dict[category],
                                       key = lambda name: name[0]):
+            for (model, enabled) in sorted(self.master_category_dict[category],
+                                      key=lambda name: name[0]):
                 if(enabled):
                     self.model_box.Append(model)
 …
         hint = "toggle view of model from 1D to 2D  or 2D to 1D"
         self.model_view.SetToolTipString(hint)
         cat_set_box = wx.StaticBox(self, -1, 'Category')
         sizer_cat_box = wx.StaticBoxSizer(cat_set_box, wx.HORIZONTAL)
         sizer_cat_box.SetMinSize((200, 50))
         self.categorybox = wx.ComboBox(self, -1, style=wx.CB_READONLY)
         self.categorybox.SetToolTip( wx.ToolTip("Select a Category/Type") )
+        self.categorybox.SetToolTip(wx.ToolTip("Select a Category/Type"))
         self._populate_listbox()
         wx.EVT_COMBOBOX(self.categorybox, -1, self._show_combox)
 …
         #self.struct_rbutton = wx.RadioButton(self, -1, "Structure Factor ")
         #self.plugin_rbutton = wx.RadioButton(self, -1, "Uncategorized")
         #self.Bind(wx.EVT_RADIOBUTTON, self._show_combox,
         #                   id=self.shape_rbutton.GetId())
 …
         #                    id=self.plugin_rbutton.GetId())
         #MAC needs SetValue
         show_cat_button = wx.Button(self, -1, "Modify")
         cat_tip = "Modify model categories \n"
         cat_tip += "(also accessible from the menu bar)."
         show_cat_button.SetToolTip( wx.ToolTip(cat_tip) )
+        show_cat_button.SetToolTip(wx.ToolTip(cat_tip))
         show_cat_button.Bind(wx.EVT_BUTTON, self._on_modify_cat)
         sizer_cat_box.Add(self.categorybox, 1, wx.RIGHT, 3)
         sizer_cat_box.Add((10,10))
+        sizer_cat_box.Add((10, 10))
         sizer_cat_box.Add(show_cat_button)
         #self.shape_rbutton.SetValue(True)
         sizer_radiobutton = wx.GridSizer(2, 2, 5, 5)
         #sizer_radiobutton.Add(self.shape_rbutton)
         #sizer_radiobutton.Add(self.shape_indep_rbutton)
         sizer_radiobutton.Add((5,5))
+        sizer_radiobutton.Add((5, 5))
         sizer_radiobutton.Add(self.model_view, 1, wx.RIGHT, 5)
         #sizer_radiobutton.Add(self.plugin_rbutton)
         #sizer_radiobutton.Add(self.struct_rbutton)
 #        sizer_radiobutton.Add((5,5))
         sizer_radiobutton.Add(self.model_help, 1, wx.RIGHT|wx.LEFT, 5)
+        sizer_radiobutton.Add(self.model_help, 1, wx.RIGHT | wx.LEFT, 5)
 #        sizer_radiobutton.Add((5,5))
         sizer_radiobutton.Add(self.model_func, 1, wx.RIGHT, 5)
 …
         sizer_selection = wx.BoxSizer(wx.HORIZONTAL)
         mutifactor_selection = wx.BoxSizer(wx.HORIZONTAL)
         self.text1 = wx.StaticText(self, -1, "")
         self.text2 = wx.StaticText(self, -1, "P(Q)*S(Q)")
 …
         self.formfactorbox = wx.ComboBox(self, -1, style=wx.CB_READONLY)
         self.formfactorbox.SetToolTip( wx.ToolTip("Select a Model") )
+        self.formfactorbox.SetToolTip(wx.ToolTip("Select a Model"))
         if self.model != None:
             self.formfactorbox.SetValue(self.model.name)
 …
             print "_set_model_sizer_selection: disabled."
             #self._set_model_sizer_selection(self.model)
         sizer_selection.Add(self.text1)
         sizer_selection.Add((10, 5))
 …
         sizer_selection.Add((5, 5))
         sizer_selection.Add(self.structurebox)
         mutifactor_selection.Add((13, 5))
         mutifactor_selection.Add(self.mutifactor_text)
 …
         boxsizer1.Add((10, 10))
         boxsizer1.Add(mutifactor_selection)
         self._set_multfactor_combobox()
         self.multifactorbox.SetSelection(1)
 …
         sizer.Add(boxsizer1, 0, wx.EXPAND | wx.ALL, 10)
         sizer.Layout()
     def on_smear_helper(self, update=False):
         """
         Help for onSmear if implemented
         :param update: force or not to update
         """
 …
     def onSmear(self, event):
         """
         Create a smear object if implemented
+        Create a smear object if implemented
         """
     def onPinholeSmear(self, event):

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SasView

Changeset 7cd87c2 in sasview for src/sas/perspectives

Legend:

src/sas/perspectives/fitting/basepage.py

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