- Timestamp:
- Feb 26, 2017 10:23:04 PM (8 years ago)
- Branches:
- master, ESS_GUI, ESS_GUI_Docs, ESS_GUI_batch_fitting, ESS_GUI_bumps_abstraction, ESS_GUI_iss1116, ESS_GUI_iss879, ESS_GUI_iss959, ESS_GUI_opencl, ESS_GUI_ordering, ESS_GUI_sync_sascalc, costrafo411, magnetic_scatt, release-4.1.1, release-4.1.2, release-4.2.2, ticket-1009, ticket-1094-headless, ticket-1242-2d-resolution, ticket-1243, ticket-1249, ticket885, unittest-saveload
- Children:
- ddbac66
- Parents:
- ef2cdb3
- Location:
- src/sas/sasgui/perspectives/fitting/media
- Files:
-
- 2 edited
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src/sas/sasgui/perspectives/fitting/media/fitting_help.rst
r26c8be3 r5295cf5 34 34 * in *Single* fit mode - individual data sets are fitted independently one-by-one 35 35 36 * in *Simultaneous* fit mode - multiple data sets are fitted simultaneously to the *same* model with/without constrained parameters (this might be useful, for example, if you have measured the same sample at different contrasts) 36 * in *Simultaneous* fit mode - multiple data sets are fitted simultaneously to 37 the *same* model with/without constrained parameters (this might be useful, 38 for example, if you have measured the same sample at different contrasts) 37 39 38 40 * in *Batch* fit mode - multiple data sets are fitted sequentially to the *same* model (this might be useful, for example, if you have performed a kinetic or time-resolved experiment and have *lots* of data sets!) … … 43 45 ----------------- 44 46 45 By default, the models in SasView are grouped into five categories 46 47 * *Shapes* - models describing 'objects' (spheres, cylinders, etc) 47 The models in SasView are grouped into categories. By default these consist of: 48 49 * *Cylinder* - cylindrical shapes (disc, right cylinder, cylinder with endcaps 50 etc) 51 * *Ellipsoid* - ellipsoidal shapes (oblate,prolate, core shell, etc) 52 * *Parellelepiped* - as the name implies 53 * *Sphere* - sheroidal shapes (sphere, core multishell, vesicle, etc) 54 * *Lamellae* - lamellar shapes (lamellar, core shell lamellar, stacked 55 lamellar, etc) 48 56 * *Shape-Independent* - models describing structure in terms of density correlation functions, fractals, peaks, power laws, etc 49 * *Customized Models* - SasView- or User-created (non-library) Python models 50 * *Uncategorised* - other models (for reflectivity, etc) 57 * *Paracrystal* - semi ordered structures (bcc, fcc, etc) 51 58 * *Structure Factor* - S(Q) models 59 * *Plugin Models* - User-created (custom/non-library) Python models 52 60 53 61 Use the *Category* drop-down menu to chose a category of model, then select … … 84 92 .. image:: cat_fig0.bmp 85 93 86 The categorization of all models except the customized models can be reassigned,87 added to, and removed using *Category Manager*. Models can also be hidden from view 88 in the drop-down menus.94 The categorization of all models except the user supplied Plugin Models can be 95 reassigned, added to, and removed using *Category Manager*. Models can also be 96 hidden from view in the drop-down menus. 89 97 90 98 .. image:: cat_fig1.bmp … … 93 101 ^^^^^^^^^^^^^^^^^ 94 102 95 To change category, highlight a model in the list by left-clicking on its entry and96 then click the *Modify* button. Use the *Change Category* panel that appears to make 97 t he required changes.103 To change category, highlight a model in the list by left-clicking on its entry 104 and then click the *Modify* button. Use the *Change Category* panel that appears 105 to make the required changes. 98 106 99 107 .. image:: cat_fig2.bmp … … 106 114 ^^^^^^^^^^^^^^^^^^^^^ 107 115 108 Use the *Enable All / Disable All* buttons and the check boxes beside each model to109 select the models to show/hide. To apply the selection, click *Ok*. Otherwise click 110 *Cancel*.116 Use the *Enable All / Disable All* buttons and the check boxes beside each model 117 to select the models to show/hide. To apply the selection, click *Ok*. Otherwise 118 click *Cancel*. 111 119 112 120 *NB: It may be necessary to change to a different category and then back again* … … 118 126 --------------- 119 127 120 For a complete list of all the library models available in SasView, see the `Model Documentation <../../../index.html>`_ . 128 For a complete list of all the library models available in SasView, see 129 the `Model Documentation <../../../index.html>`_ . 121 130 122 131 It is also possible to add your own models. … … 131 140 There are essentially three ways to generate new fitting models for SasView: 132 141 133 * Using the SasView :ref:`New_Plugin_Model` helper dialog (best for beginners and/or relatively simple models) 134 * By copying/editing an existing model (this can include models generated by the *New Plugin Model* dialog) in the :ref:`Python_shell` or :ref:`Advanced_Plugin_Editor` (suitable for all use cases) 135 * By writing a model from scratch outside of SasView (only recommended for code monkeys!) 142 * Using the SasView :ref:`New_Plugin_Model` helper dialog (best for beginners 143 and/or relatively simple models) 144 * By copying/editing an existing model (this can include models generated by 145 the New Plugin Model* dialog) in the :ref:`Python_shell` or 146 :ref:`Advanced_Plugin_Editor` (suitable for all use cases) 147 * By writing a model from scratch outside of SasView (only recommended for code 148 monkeys!) 136 149 137 150 Please read the guidance on :ref:`Writing_a_Plugin` before proceeding. … … 163 176 ^^^^^^^^^^^^^^^^ 164 177 165 Relatively straightforward models can be programmed directly from the SasView GUI166 using the *New Plugin Model Function*.178 Relatively straightforward models can be programmed directly from the SasView 179 GUI using the *New Plugin Model Function*. 167 180 168 181 .. image:: new_model.bmp … … 175 188 *checked*\ . 176 189 177 Also note that the 'Fit Parameters' have been split into two sections: those which178 can be polydisperse (shape and orientation parameters) and those which are not 179 (eg, scattering length densities).190 Also note that the 'Fit Parameters' have been split into two sections: those 191 which can be polydisperse (shape and orientation parameters) and those which are 192 not (eg, scattering length densities). 180 193 181 194 A model file generated by this option can be viewed and further modified using … … 187 200 .. image:: sum_model.bmp 188 201 189 This option creates a custom model of the form::190 191 Custom Model = scale_factor \* {(scale_1 \* model_1) \+ (scale_2 \* model_2)} \+ background202 This option creates a custom Plugin Model of the form:: 203 204 Plugin Model = scale_factor * {(scale_1 * model_1) +/- (scale_2 * model_2)} + background 192 205 193 206 or:: 194 207 195 Custom Model = scale_factor \* model_1 \* model_2 \+ background208 Plugin Model = scale_factor * model_1 /* model_2 + background 196 209 197 210 In the *Easy Sum/Multi Editor* give the new model a function name and brief … … 232 245 Simply highlight the plugin model to be removed. The operation is final!!! 233 246 234 *NB: Plugin models shipped with SasView cannot be removed in this way.*247 *NB: Models shipped with SasView cannot be removed in this way.* 235 248 236 249 Load Plugin Models 237 250 ^^^^^^^^^^^^^^^^^^ 238 251 239 This option loads (or re-loads) all models present in the *~\\.sasview\\plugin_models* folder. 252 This option loads (or re-loads) all models present in the 253 *~\\.sasview\\plugin_models* folder. 240 254 241 255 .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ … … 400 414 :ref:`Assessing_Fit_Quality`. 401 415 402 *NB: If you need to use a custom ized model, you must ensure that model is available*403 *first (see* :ref:`Adding_your_own_models` *).*416 *NB: If you need to use a custom Plugin Model, you must ensure that model is 417 available first (see* :ref:`Adding_your_own_models` *).* 404 418 405 419 Method … … 484 498 If multiple data sets are in one file, load just that file. *Unselect All Data*, then 485 499 select a single initial data set to be fitted. Fit that selected data set as described 486 above under :ref:`Single_Fit_Mode` 487 488 *NB: If you need to use a custom ized model, you must ensure that model is available*489 *first (see* :ref:`Adding_your_own_models` *).*500 above under :ref:`Single_Fit_Mode`. 501 502 *NB: If you need to use a custom Plugin Model, you must ensure that model is 503 available first (see* :ref:`Adding_your_own_models` *).* 490 504 491 505 Method -
src/sas/sasgui/perspectives/fitting/media/plugin.rst
rca6cbc1c r5295cf5 27 27 28 28 the next time SasView is started it will compile the plugin and add 29 it to the list of * CustomizedModels* in a FitPage.29 it to the list of *Plugin Models* in a FitPage. 30 30 31 31 SasView models can be of three types:
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