- Timestamp:
- Jun 9, 2017 1:13:46 PM (7 years ago)
- Branches:
- master, ESS_GUI, ESS_GUI_Docs, ESS_GUI_batch_fitting, ESS_GUI_bumps_abstraction, ESS_GUI_iss1116, ESS_GUI_iss879, ESS_GUI_iss959, ESS_GUI_opencl, ESS_GUI_ordering, ESS_GUI_sync_sascalc, costrafo411, magnetic_scatt, release-4.2.2, ticket-1009, ticket-1094-headless, ticket-1242-2d-resolution, ticket-1243, ticket-1249, ticket885, unittest-saveload
- Children:
- 7b15990
- Parents:
- 47d93073 (diff), 8cec26b (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent. - Location:
- src/sas
- Files:
-
- 1 added
- 1 deleted
- 6 edited
- 1 moved
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sasgui/perspectives/fitting/fitting.py (modified) (3 diffs)
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sasgui/perspectives/fitting/models.py (modified) (1 diff)
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sascalc/dataloader/manipulations.py (modified) (3 diffs)
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sasgui/guiframe/local_perspectives/plotting/Plotter2D.py (modified) (9 diffs)
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sasgui/guiframe/local_perspectives/plotting/SectorSlicer.py (modified) (4 diffs)
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sasgui/guiframe/local_perspectives/plotting/SlicerParameters.py (deleted)
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sasgui/guiframe/local_perspectives/plotting/parameters_panel_boxsum.py (moved) (moved from src/sas/sasgui/guiframe/local_perspectives/plotting/slicerpanel.py) (11 diffs)
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sasgui/guiframe/local_perspectives/plotting/parameters_panel_slicer.py (added)
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sasgui/perspectives/fitting/basepage.py (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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src/sas/sasgui/perspectives/fitting/fitting.py
ra1b8fee ra534432 1734 1734 @param unsmeared_error: data error, rescaled to unsmeared model 1735 1735 """ 1736 try: 1737 np.nan_to_num(y) 1738 new_plot = self.create_theory_1D(x, y, page_id, model, data, state, 1739 data_description=model.name, 1740 data_id=str(page_id) + " " + data.name) 1741 if unsmeared_model is not None: 1742 self.create_theory_1D(x, unsmeared_model, page_id, model, data, state, 1743 data_description=model.name + " unsmeared", 1744 data_id=str(page_id) + " " + data.name + " unsmeared") 1745 1746 if unsmeared_data is not None and unsmeared_error is not None: 1747 self.create_theory_1D(x, unsmeared_data, page_id, model, data, state, 1748 data_description="Data unsmeared", 1749 data_id="Data " + data.name + " unsmeared", 1750 dy=unsmeared_error) 1751 # Comment this out until we can get P*S models with correctly populated parameters 1752 #if sq_model is not None and pq_model is not None: 1753 # self.create_theory_1D(x, sq_model, page_id, model, data, state, 1754 # data_description=model.name + " S(q)", 1755 # data_id=str(page_id) + " " + data.name + " S(q)") 1756 # self.create_theory_1D(x, pq_model, page_id, model, data, state, 1757 # data_description=model.name + " P(q)", 1758 # data_id=str(page_id) + " " + data.name + " P(q)") 1759 1760 current_pg = self.fit_panel.get_page_by_id(page_id) 1761 title = new_plot.title 1762 batch_on = self.fit_panel.get_page_by_id(page_id).batch_on 1763 if not batch_on: 1764 wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, 1765 title=str(title))) 1766 elif plot_result: 1767 top_data_id = self.fit_panel.get_page_by_id(page_id).data.id 1768 if data.id == top_data_id: 1769 wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, 1770 title=str(title))) 1771 caption = current_pg.window_caption 1772 self.page_finder[page_id].set_fit_tab_caption(caption=caption) 1773 1774 self.page_finder[page_id].set_theory_data(data=new_plot, 1736 1737 number_finite = np.count_nonzero(np.isfinite(y)) 1738 np.nan_to_num(y) 1739 new_plot = self.create_theory_1D(x, y, page_id, model, data, state, 1740 data_description=model.name, 1741 data_id=str(page_id) + " " + data.name) 1742 if unsmeared_model is not None: 1743 self.create_theory_1D(x, unsmeared_model, page_id, model, data, state, 1744 data_description=model.name + " unsmeared", 1745 data_id=str(page_id) + " " + data.name + " unsmeared") 1746 1747 if unsmeared_data is not None and unsmeared_error is not None: 1748 self.create_theory_1D(x, unsmeared_data, page_id, model, data, state, 1749 data_description="Data unsmeared", 1750 data_id="Data " + data.name + " unsmeared", 1751 dy=unsmeared_error) 1752 # Comment this out until we can get P*S models with correctly populated parameters 1753 #if sq_model is not None and pq_model is not None: 1754 # self.create_theory_1D(x, sq_model, page_id, model, data, state, 1755 # data_description=model.name + " S(q)", 1756 # data_id=str(page_id) + " " + data.name + " S(q)") 1757 # self.create_theory_1D(x, pq_model, page_id, model, data, state, 1758 # data_description=model.name + " P(q)", 1759 # data_id=str(page_id) + " " + data.name + " P(q)") 1760 1761 current_pg = self.fit_panel.get_page_by_id(page_id) 1762 title = new_plot.title 1763 batch_on = self.fit_panel.get_page_by_id(page_id).batch_on 1764 if not batch_on: 1765 wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title=str(title))) 1766 elif plot_result: 1767 top_data_id = self.fit_panel.get_page_by_id(page_id).data.id 1768 if data.id == top_data_id: 1769 wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title=str(title))) 1770 caption = current_pg.window_caption 1771 self.page_finder[page_id].set_fit_tab_caption(caption=caption) 1772 1773 self.page_finder[page_id].set_theory_data(data=new_plot, 1775 1774 fid=data.id) 1776 1777 1778 1775 if toggle_mode_on: 1776 wx.PostEvent(self.parent, 1777 NewPlotEvent(group_id=str(page_id) + " Model2D", 1779 1778 action="Hide")) 1780 1781 1782 1783 1779 else: 1780 if update_chisqr: 1781 wx.PostEvent(current_pg, 1782 Chi2UpdateEvent(output=self._cal_chisqr( 1784 1783 data=data, 1785 1784 fid=fid, 1786 1785 weight=weight, 1787 page_id=page_id, 1788 index=index))) 1789 else: 1790 self._plot_residuals(page_id=page_id, data=data, fid=fid, 1791 index=index, weight=weight) 1792 1786 page_id=page_id, 1787 index=index))) 1788 else: 1789 self._plot_residuals(page_id=page_id, data=data, fid=fid, 1790 index=index, weight=weight) 1791 1792 if not number_finite: 1793 logger.error("Using the present parameters the model does not return any finite value. ") 1794 msg = "Computing Error: Model did not return any finite value." 1795 wx.PostEvent(self.parent, StatusEvent(status = msg, info="error")) 1796 else: 1793 1797 msg = "Computation completed!" 1798 if number_finite != y.size: 1799 msg += ' PROBLEM: For some Q values the model returns non finite intensities!' 1800 logger.error("For some Q values the model returns non finite intensities.") 1794 1801 wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop")) 1795 except:1796 raise1797 1802 1798 1803 def _calc_exception(self, etype, value, tb): … … 1819 1824 that can be plot. 1820 1825 """ 1826 number_finite = np.count_nonzero(np.isfinite(image)) 1821 1827 np.nan_to_num(image) 1822 1828 new_plot = Data2D(image=image, err_image=data.err_data) … … 1877 1883 self._plot_residuals(page_id=page_id, data=data, fid=fid, 1878 1884 index=index, weight=weight) 1879 msg = "Computation completed!" 1880 wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop")) 1885 1886 if not number_finite: 1887 logger.error("Using the present parameters the model does not return any finite value. ") 1888 msg = "Computing Error: Model did not return any finite value." 1889 wx.PostEvent(self.parent, StatusEvent(status = msg, info="error")) 1890 else: 1891 msg = "Computation completed!" 1892 if number_finite != image.size: 1893 msg += ' PROBLEM: For some Qx,Qy values the model returns non finite intensities!' 1894 logger.error("For some Qx,Qy values the model returns non finite intensities.") 1895 wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop")) 1881 1896 1882 1897 def _draw_model2D(self, model, page_id, qmin, -
src/sas/sasgui/perspectives/fitting/models.py
r81b1f4d r8cec26b 156 156 try: 157 157 import compileall 158 compileall.compile_dir(dir=dir, ddir=dir, force= 1,158 compileall.compile_dir(dir=dir, ddir=dir, force=0, 159 159 quiet=report_problem) 160 160 except: -
src/sas/sascalc/dataloader/manipulations.py
r46cd1c3 r324e0bf 199 199 z_max = max(data2D.q_data) 200 200 z_min = min(data2D.q_data) 201 x_max = data2D.dqx_data[data2D.q_data[z_max]]202 x_min = data2D.dqx_data[data2D.q_data[z_min]]203 y_max = data2D.dqy_data[data2D.q_data[z_max]]204 y_min = data2D.dqy_data[data2D.q_data[z_min]]201 dqx_at_z_max = data2D.dqx_data[np.argmax(data2D.q_data)] 202 dqx_at_z_min = data2D.dqx_data[np.argmin(data2D.q_data)] 203 dqy_at_z_max = data2D.dqy_data[np.argmax(data2D.q_data)] 204 dqy_at_z_min = data2D.dqy_data[np.argmin(data2D.q_data)] 205 205 # Find qdx at q = 0 206 dq_overlap_x = ( x_min * z_max - x_max * z_min) / (z_max - z_min)206 dq_overlap_x = (dqx_at_z_min * z_max - dqx_at_z_max * z_min) / (z_max - z_min) 207 207 # when extrapolation goes wrong 208 208 if dq_overlap_x > min(data2D.dqx_data): … … 210 210 dq_overlap_x *= dq_overlap_x 211 211 # Find qdx at q = 0 212 dq_overlap_y = ( y_min * z_max - y_max * z_min) / (z_max - z_min)212 dq_overlap_y = (dqy_at_z_min * z_max - dqy_at_z_max * z_min) / (z_max - z_min) 213 213 # when extrapolation goes wrong 214 214 if dq_overlap_y > min(data2D.dqy_data): … … 220 220 # Final protection of dq 221 221 if dq_overlap < 0: 222 dq_overlap = y_min222 dq_overlap = dqy_at_z_min 223 223 dqx_data = data2D.dqx_data[np.isfinite(data2D.data)] 224 224 dqy_data = data2D.dqy_data[np.isfinite( -
src/sas/sasgui/guiframe/local_perspectives/plotting/Plotter2D.py
r7432acb r3e5648b 361 361 if self.slicer.__class__.__name__ != "BoxSum": 362 362 wx_id = ids.next() 363 slicerpop.Append(wx_id, '&Edit Slicer Parameters') 363 name = '&Edit Slicer Parameters and Batch Slicing' 364 slicerpop.Append(wx_id, name) 364 365 wx.EVT_MENU(self, wx_id, self._onEditSlicer) 365 366 slicerpop.AppendSeparator() … … 532 533 533 534 """ 534 # #Clear current slicer535 # Clear current slicer 535 536 if self.slicer is not None: 536 537 self.slicer.clear() 537 # #Create a new slicer538 # Create a new slicer 538 539 self.slicer_z += 1 539 540 self.slicer = slicer(self, self.subplot, zorder=self.slicer_z) 540 541 self.subplot.set_ylim(self.data2D.ymin, self.data2D.ymax) 541 542 self.subplot.set_xlim(self.data2D.xmin, self.data2D.xmax) 542 # #Draw slicer543 # Draw slicer 543 544 self.update() 544 545 self.slicer.update() … … 572 573 npt = math.floor(npt) 573 574 from sas.sascalc.dataloader.manipulations import CircularAverage 574 # #compute the maximum radius of data2D575 # compute the maximum radius of data2D 575 576 self.qmax = max(math.fabs(self.data2D.xmax), 576 577 math.fabs(self.data2D.xmin)) … … 578 579 math.fabs(self.data2D.ymin)) 579 580 self.radius = math.sqrt(math.pow(self.qmax, 2) + math.pow(self.ymax, 2)) 580 # #Compute beam width581 # Compute beam width 581 582 bin_width = (self.qmax + self.qmax) / npt 582 # #Create data1D circular average of data2D583 # Create data1D circular average of data2D 583 584 Circle = CircularAverage(r_min=0, r_max=self.radius, 584 585 bin_width=bin_width) … … 599 600 new_plot.name = "Circ avg " + self.data2D.name 600 601 new_plot.source = self.data2D.source 601 # new_plot.info = self.data2D.info602 # new_plot.info = self.data2D.info 602 603 new_plot.interactive = True 603 604 new_plot.detector = self.data2D.detector 604 605 605 # #If the data file does not tell us what the axes are, just assume...606 # If the data file does not tell us what the axes are, just assume... 606 607 new_plot.xaxis("\\rm{Q}", "A^{-1}") 607 608 if hasattr(self.data2D, "scale") and \ … … 615 616 new_plot.id = "Circ avg " + self.data2D.name 616 617 new_plot.is_data = True 617 self.parent.update_theory(data_id=self.data2D.id, \ 618 theory=new_plot) 618 self.parent.update_theory(data_id=self.data2D.id, theory=new_plot) 619 619 wx.PostEvent(self.parent, 620 620 NewPlotEvent(plot=new_plot, title=new_plot.name)) … … 630 630 """ 631 631 if self.slicer is not None: 632 from SlicerParametersimport SlicerParameterPanel632 from parameters_panel_slicer import SlicerParameterPanel 633 633 dialog = SlicerParameterPanel(self, -1, "Slicer Parameters") 634 634 dialog.set_slicer(self.slicer.__class__.__name__, … … 668 668 params = self.slicer.get_params() 669 669 ## Create a new panel to display results of summation of Data2D 670 from slicerpanelimport SlicerPanel670 from parameters_panel_boxsum import SlicerPanel 671 671 win = MDIFrame(self.parent, None, 'None', (100, 200)) 672 672 new_panel = SlicerPanel(parent=win, id=-1, … … 758 758 if default_name.count('.') > 0: 759 759 default_name = default_name.split('.')[0] 760 #default_name += "_out"761 760 if self.parent is not None: 762 761 self.parent.show_data2d(data, default_name) 763 762 764 763 def modifyGraphAppearance(self, e): 765 self.graphApp = graphAppearance(self, 'Modify graph appearance', legend=False) 764 self.graphApp = graphAppearance(self, 'Modify graph appearance', 765 legend=False) 766 766 self.graphApp.setDefaults(self.grid_on, self.legend_on, 767 767 self.xaxis_label, self.yaxis_label, -
src/sas/sasgui/guiframe/local_perspectives/plotting/SectorSlicer.py
r7432acb r8de66b6 37 37 ## Absolute value of the Angle between the middle line and any side line 38 38 self.phi = math.pi / 12 39 # Binning base for log/lin binning 40 self.bin_base = 0 39 41 ## Middle line 40 42 self.main_line = LineInteractor(self, self.base.subplot, color='blue', … … 151 153 phimin = -self.left_line.phi + self.main_line.theta 152 154 phimax = self.left_line.phi + self.main_line.theta 155 bin_base = self.bin_base 153 156 if nbins is None: 154 157 nbins = 20 155 158 sect = SectorQ(r_min=0.0, r_max=radius, 156 159 phi_min=phimin + math.pi, 157 phi_max=phimax + math.pi, nbins=nbins )160 phi_max=phimax + math.pi, nbins=nbins, base=bin_base) 158 161 159 162 sector = sect(self.base.data2D) … … 239 242 params["Delta_Phi [deg]"] = math.fabs(self.left_line.phi * 180 / math.pi) 240 243 params["nbins"] = self.nbins 244 params["binning base"] = self.bin_base 241 245 return params 242 246 … … 252 256 phi = math.fabs(params["Delta_Phi [deg]"] * math.pi / 180) 253 257 self.nbins = int(params["nbins"]) 258 self.bin_base = params["binning base"] 254 259 self.main_line.theta = main 255 260 ## Reset the slicer parameters -
src/sas/sasgui/guiframe/local_perspectives/plotting/parameters_panel_boxsum.py
r7432acb r37d461c 1 1 import wx 2 2 import wx.lib.newevent 3 #from copy import deepcopy 3 from parameters_panel_slicer import SlicerParameterPanel 4 4 from sas.sasgui.guiframe.utils import format_number 5 from sas.sasgui.guiframe. events import SlicerParameterEvent6 from sas.sasgui.guiframe.events import EVT_SLICER_PARS7 from sas.sasgui.guiframe.events import EVT_SLICER 5 from sas.sasgui.guiframe.panel_base import PanelBase 6 from sas.sasgui.guiframe.events import (SlicerParameterEvent, EVT_SLICER_PARS, 7 EVT_SLICER) 8 8 9 from sas.sasgui.guiframe.panel_base import PanelBase10 9 11 10 class SlicerPanel(wx.Panel, PanelBase): … … 13 12 Panel class to show the slicer parameters 14 13 """ 15 #TODO: show units 16 #TODO: order parameters properly 17 ## Internal name for the AUI manager 14 # Internal name for the AUI manager 18 15 window_name = "Slicer panel" 19 # #Title to appear on top of the window16 # Title to appear on top of the window 20 17 window_caption = "Slicer Panel" 21 18 CENTER_PANE = False … … 25 22 wx.Panel.__init__(self, parent, id, *args, **kwargs) 26 23 PanelBase.__init__(self) 27 # #Initialization of the class24 # Initialization of the class 28 25 self.base = base 29 26 if params is None: … … 44 41 else: 45 42 self.set_slicer(type, params) 46 ## Bindings 47 self.parent.Bind(EVT_SLICER, self.onEVT_SLICER) 48 self.parent.Bind(EVT_SLICER_PARS, self.onParamChange) 49 50 def onEVT_SLICER(self, event): 51 """ 52 Process EVT_SLICER events 53 When the slicer changes, update the panel 54 55 :param event: EVT_SLICER event 56 57 """ 58 event.Skip() 59 if event.obj_class is None: 60 self.set_slicer(None, None) 61 else: 62 self.set_slicer(event.type, event.params) 43 # Bindings 44 self.parent.Bind(EVT_SLICER, SlicerParameterPanel.on_evt_slicer) 45 self.parent.Bind(EVT_SLICER_PARS, SlicerParameterPanel.on_param_change) 63 46 64 47 def set_slicer(self, type, params): … … 84 67 keys.sort() 85 68 for item in keys: 86 if not item.lower() in ["num_points", "avg", "avg_error", "sum", "sum_error"]: 69 if not item.lower() in ["num_points", "avg", "avg_error", "sum", 70 "sum_error"]: 87 71 n += 1 88 72 text = wx.StaticText(self, -1, item, style=wx.ALIGN_LEFT) 89 73 self.bck.Add(text, (n - 1, 0), 90 flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL, border=15) 74 flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL, 75 border=15) 91 76 ctl = wx.TextCtrl(self, -1, size=(80, 20), 92 77 style=wx.TE_PROCESS_ENTER) … … 95 80 ctl.SetToolTipString(hint_msg) 96 81 ctl.SetValue(str(format_number(params[item]))) 97 self.Bind(wx.EVT_TEXT_ENTER, self.on TextEnter)98 ctl.Bind(wx.EVT_SET_FOCUS, self.on SetFocus)99 ctl.Bind(wx.EVT_KILL_FOCUS, self.on TextEnter)82 self.Bind(wx.EVT_TEXT_ENTER, self.on_text_enter) 83 ctl.Bind(wx.EVT_SET_FOCUS, self.on_set_focus) 84 ctl.Bind(wx.EVT_KILL_FOCUS, self.on_text_enter) 100 85 self.parameters.append([item, ctl]) 101 self.bck.Add(ctl, (n - 1, 1), flag=wx.TOP | wx.BOTTOM, border=0) 86 self.bck.Add(ctl, (n - 1, 1), flag=wx.TOP | wx.BOTTOM, 87 border=0) 102 88 for item in keys: 103 if item.lower() in ["num_points", "avg", "avg_error", "sum", "sum_error"]: 89 if item.lower() in ["num_points", "avg", "avg_error", "sum", 90 "sum_error"]: 104 91 n += 1 105 text = wx.StaticText(self, -1, item + ": ", style=wx.ALIGN_LEFT) 106 self.bck.Add(text, (n - 1, 0), flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL, 92 text = wx.StaticText(self, -1, item + ": ", 93 style=wx.ALIGN_LEFT) 94 self.bck.Add(text, (n - 1, 0), 95 flag=wx.LEFT | wx.ALIGN_CENTER_VERTICAL, 107 96 border=15) 108 97 ctl = wx.StaticText(self, -1, … … 110 99 style=wx.ALIGN_LEFT) 111 100 ctl.SetToolTipString("Result %s" % item) 112 self.bck.Add(ctl, (n - 1, 1), flag=wx.TOP | wx.BOTTOM, border=0) 101 self.bck.Add(ctl, (n - 1, 1), flag=wx.TOP | wx.BOTTOM, 102 border=0) 113 103 self.bck.Layout() 114 104 self.Layout() 115 p sizer = self.parent.GetSizer()116 if p sizer is not None:117 p sizer.Layout()105 p_sizer = self.parent.GetSizer() 106 if p_sizer is not None: 107 p_sizer.Layout() 118 108 119 def on SetFocus(self, evt):109 def on_set_focus(self, evt): 120 110 """ 121 111 Highlight the txtcrtl … … 126 116 # Select the whole control, after this event resolves 127 117 wx.CallAfter(widget.SetSelection, -1, -1) 128 return129 118 130 def onParamChange(self, evt): 131 """ 132 Receive and event and reset the text field contained in self.parameters 133 134 """ 135 evt.Skip() 136 for item in self.parameters: 137 if item[0] in evt.params: 138 item[1].SetValue(format_number(evt.params[item[0]])) 139 item[1].Refresh() 140 141 def onTextEnter(self, evt): 119 def on_text_enter(self, evt): 142 120 """ 143 121 Parameters have changed … … 149 127 try: 150 128 params[item[0]] = float(item[1].GetValue()) 151 item[1].SetBackgroundColour(wx.SystemSettings_GetColour(wx.SYS_COLOUR_WINDOW)) 129 item[1].SetBackgroundColour(wx.SystemSettings_GetColour( 130 wx.SYS_COLOUR_WINDOW)) 152 131 item[1].Refresh() 153 132 except: … … 155 134 item[1].SetBackgroundColour("pink") 156 135 item[1].Refresh() 157 158 if has_error == False: 136 if not has_error: 159 137 # Post parameter event 160 # #base is guiframe is this case138 # base is guiframe is this case 161 139 event = SlicerParameterEvent(type=self.type, params=params) 162 140 wx.PostEvent(self.base, event) … … 166 144 On Close Event 167 145 """ 168 ID= self.uid169 self.parent.delete_panel( ID)146 uid = self.uid 147 self.parent.delete_panel(uid) 170 148 self.frame.Destroy() -
src/sas/sasgui/perspectives/fitting/basepage.py
ra1b8fee r914c49d5 254 254 if not hasattr(self, "model_view"): 255 255 return 256 toggle_mode_on = self.model_view.IsEnabled() 256 toggle_mode_on = self.model_view.IsEnabled() or self.data is None 257 257 if toggle_mode_on: 258 258 if self.enable2D and not check_data_validity(self.data):
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