Changeset 41517a6 in sasview


Ignore:
Timestamp:
Aug 9, 2011 11:24:54 AM (13 years ago)
Author:
Jessica Tumarkin <jtumarki@…>
Branches:
master, ESS_GUI, ESS_GUI_Docs, ESS_GUI_batch_fitting, ESS_GUI_bumps_abstraction, ESS_GUI_iss1116, ESS_GUI_iss879, ESS_GUI_iss959, ESS_GUI_opencl, ESS_GUI_ordering, ESS_GUI_sync_sascalc, costrafo411, magnetic_scatt, release-4.1.1, release-4.1.2, release-4.2.2, release_4.0.1, ticket-1009, ticket-1094-headless, ticket-1242-2d-resolution, ticket-1243, ticket-1249, ticket885, unittest-saveload
Children:
032d585
Parents:
6992dfd
Message:

Sphinx Documentation rebuild, conf.py changes, import statement changes (for dataloader)

Location:
park_integration
Files:
6 added
18 edited

Legend:

Unmodified
Added
Removed

  • park_integration/docs/sphinx/_build/html/api/AbstractFitEngine.html

    r0c3003d r41517a6  
    3636             accesskey="I">index</a></li> 
    3737        <li class="right" > 
    38           <a href="../py-modindex.html" title="Python Module Index" 
    39              >modules</a> |</li> 
    40         <li class="right" > 
    4138          <a href="Fitting.html" title="Fitting" 
    4239             accesskey="N">next</a> |</li> 
    … …  
    5653  <div class="section" id="abstractfitengine"> 
    5754<h1>AbstractFitEngine<a class="headerlink" href="#abstractfitengine" title="Permalink to this headline">¶</a></h1> 
    58 <div class="section" id="module-sans.fit.AbstractFitEngine"> 
    59 <span id="mod-sans-fit-abstractfitengine"></span><h2>:mod:` sans.fit.AbstractFitEngine`<a class="headerlink" href="#module-sans.fit.AbstractFitEngine" title="Permalink to this headline">¶</a></h2> 
    60 <dl class="exception"> 
    61 <dt id="sans.fit.AbstractFitEngine.FitAbort"> 
    62 <em class="property">exception </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">FitAbort</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitAbort" title="Permalink to this definition">¶</a></dt> 
    63 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">exceptions.Exception</span></tt></p> 
    64 <p>Exception raise to stop the fit</p> 
    65 <dl class="attribute"> 
    66 <dt id="sans.fit.AbstractFitEngine.FitAbort.args"> 
    67 <tt class="descname">args</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitAbort.args" title="Permalink to this definition">¶</a></dt> 
    68 <dd></dd></dl> 
    69  
    70 <dl class="attribute"> 
    71 <dt id="sans.fit.AbstractFitEngine.FitAbort.message"> 
    72 <tt class="descname">message</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitAbort.message" title="Permalink to this definition">¶</a></dt> 
    73 <dd><p>exception message</p> 
    74 </dd></dl> 
    75  
    76 </dd></dl> 
    77  
    78 <dl class="class"> 
    79 <dt id="sans.fit.AbstractFitEngine.FitArrange"> 
    80 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">FitArrange</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange" title="Permalink to this definition">¶</a></dt> 
    81 <dd><dl class="method"> 
    82 <dt id="sans.fit.AbstractFitEngine.FitArrange.add_data"> 
    83 <tt class="descname">add_data</tt><big>(</big><em>data</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.add_data" title="Permalink to this definition">¶</a></dt> 
    84 <dd><p>add_data fill a self.data_list with data to fit</p> 
    85 <table class="docutils field-list" frame="void" rules="none"> 
    86 <col class="field-name" /> 
    87 <col class="field-body" /> 
    88 <tbody valign="top"> 
    89 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> &#8211; Data to add in the list</td> 
    90 </tr> 
    91 </tbody> 
    92 </table> 
    93 </dd></dl> 
    94  
    95 <dl class="method"> 
    96 <dt id="sans.fit.AbstractFitEngine.FitArrange.get_data"> 
    97 <tt class="descname">get_data</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.get_data" title="Permalink to this definition">¶</a></dt> 
    98 <dd><table class="docutils field-list" frame="void" rules="none"> 
    99 <col class="field-name" /> 
    100 <col class="field-body" /> 
    101 <tbody valign="top"> 
    102 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">list of data data_list</td> 
    103 </tr> 
    104 </tbody> 
    105 </table> 
    106 </dd></dl> 
    107  
    108 <dl class="method"> 
    109 <dt id="sans.fit.AbstractFitEngine.FitArrange.get_model"> 
    110 <tt class="descname">get_model</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.get_model" title="Permalink to this definition">¶</a></dt> 
    111 <dd><table class="docutils field-list" frame="void" rules="none"> 
    112 <col class="field-name" /> 
    113 <col class="field-body" /> 
    114 <tbody valign="top"> 
    115 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">saved model</td> 
    116 </tr> 
    117 </tbody> 
    118 </table> 
    119 </dd></dl> 
    120  
    121 <dl class="method"> 
    122 <dt id="sans.fit.AbstractFitEngine.FitArrange.get_to_fit"> 
    123 <tt class="descname">get_to_fit</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.get_to_fit" title="Permalink to this definition">¶</a></dt> 
    124 <dd><p>return self.selected value</p> 
    125 </dd></dl> 
    126  
    127 <dl class="method"> 
    128 <dt id="sans.fit.AbstractFitEngine.FitArrange.remove_data"> 
    129 <tt class="descname">remove_data</tt><big>(</big><em>data</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.remove_data" title="Permalink to this definition">¶</a></dt> 
    130 <dd><p>Remove one element from the list</p> 
    131 <table class="docutils field-list" frame="void" rules="none"> 
    132 <col class="field-name" /> 
    133 <col class="field-body" /> 
    134 <tbody valign="top"> 
    135 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> &#8211; Data to remove from data_list</td> 
    136 </tr> 
    137 </tbody> 
    138 </table> 
    139 </dd></dl> 
    140  
    141 <dl class="method"> 
    142 <dt id="sans.fit.AbstractFitEngine.FitArrange.set_model"> 
    143 <tt class="descname">set_model</tt><big>(</big><em>model</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.set_model" title="Permalink to this definition">¶</a></dt> 
    144 <dd><p>set_model save a copy of the model</p> 
    145 <table class="docutils field-list" frame="void" rules="none"> 
    146 <col class="field-name" /> 
    147 <col class="field-body" /> 
    148 <tbody valign="top"> 
    149 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>model</strong> &#8211; the model being set</td> 
    150 </tr> 
    151 </tbody> 
    152 </table> 
    153 </dd></dl> 
    154  
    155 <dl class="method"> 
    156 <dt id="sans.fit.AbstractFitEngine.FitArrange.set_to_fit"> 
    157 <tt class="descname">set_to_fit</tt><big>(</big><em>value=0</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitArrange.set_to_fit" title="Permalink to this definition">¶</a></dt> 
    158 <dd><p>set self.selected to 0 or 1  for other values raise an exception</p> 
    159 <table class="docutils field-list" frame="void" rules="none"> 
    160 <col class="field-name" /> 
    161 <col class="field-body" /> 
    162 <tbody valign="top"> 
    163 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>value</strong> &#8211; integer between 0 or 1</td> 
    164 </tr> 
    165 </tbody> 
    166 </table> 
    167 </dd></dl> 
    168  
    169 </dd></dl> 
    170  
    171 <dl class="class"> 
    172 <dt id="sans.fit.AbstractFitEngine.FitData1D"> 
    173 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">FitData1D</tt><big>(</big><em>x</em>, <em>y</em>, <em>dx=None</em>, <em>dy=None</em>, <em>smearer=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D" title="Permalink to this definition">¶</a></dt> 
    174 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">DataLoader.data_info.Data1D</span></tt></p> 
    175 <p>Wrapper class  for SANS data  
    176 FitData1D inherits from DataLoader.data_info.Data1D. Implements  
    177 a way to get residuals from data.</p> 
    178 <dl class="method"> 
    179 <dt id="sans.fit.AbstractFitEngine.FitData1D.add_notes"> 
    180 <tt class="descname">add_notes</tt><big>(</big><em>message=''</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.add_notes" title="Permalink to this definition">¶</a></dt> 
    181 <dd><p>Add notes to datainfo</p> 
    182 </dd></dl> 
    183  
    184 <dl class="method"> 
    185 <dt id="sans.fit.AbstractFitEngine.FitData1D.append_empty_process"> 
    186 <tt class="descname">append_empty_process</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.append_empty_process" title="Permalink to this definition">¶</a></dt> 
    187 <dd></dd></dl> 
    188  
    189 <dl class="method"> 
    190 <dt id="sans.fit.AbstractFitEngine.FitData1D.clone_without_data"> 
    191 <tt class="descname">clone_without_data</tt><big>(</big><em>length=0</em>, <em>clone=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.clone_without_data" title="Permalink to this definition">¶</a></dt> 
    192 <dd><p>Clone the current object, without copying the data (which 
    193 will be filled out by a subsequent operation). 
    194 The data arrays will be initialized to zero.</p> 
    195 <table class="docutils field-list" frame="void" rules="none"> 
    196 <col class="field-name" /> 
    197 <col class="field-body" /> 
    198 <tbody valign="top"> 
    199 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    200 <li><strong>length</strong> &#8211; length of the data array to be initialized</li> 
    201 <li><strong>clone</strong> &#8211; if provided, the data will be copied to clone</li> 
    202 </ul> 
    203 </td> 
    204 </tr> 
    205 </tbody> 
    206 </table> 
    207 </dd></dl> 
    208  
    209 <dl class="method"> 
    210 <dt id="sans.fit.AbstractFitEngine.FitData1D.get_fit_range"> 
    211 <tt class="descname">get_fit_range</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.get_fit_range" title="Permalink to this definition">¶</a></dt> 
    212 <dd><p>return the range of data.x to fit</p> 
    213 </dd></dl> 
    214  
    215 <dl class="method"> 
    216 <dt id="sans.fit.AbstractFitEngine.FitData1D.is_slit_smeared"> 
    217 <tt class="descname">is_slit_smeared</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.is_slit_smeared" title="Permalink to this definition">¶</a></dt> 
    218 <dd><p>Check whether the data has slit smearing information</p> 
    219 <table class="docutils field-list" frame="void" rules="none"> 
    220 <col class="field-name" /> 
    221 <col class="field-body" /> 
    222 <tbody valign="top"> 
    223 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">True is slit smearing info is present, False otherwise</td> 
    224 </tr> 
    225 </tbody> 
    226 </table> 
    227 </dd></dl> 
    228  
    229 <dl class="method"> 
    230 <dt id="sans.fit.AbstractFitEngine.FitData1D.residuals"> 
    231 <tt class="descname">residuals</tt><big>(</big><em>fn</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.residuals" title="Permalink to this definition">¶</a></dt> 
    232 <dd><p>Compute residuals.</p> 
    233 <p>If self.smearer has been set, use if to smear 
    234 the data before computing chi squared.</p> 
    235 <table class="docutils field-list" frame="void" rules="none"> 
    236 <col class="field-name" /> 
    237 <col class="field-body" /> 
    238 <tbody valign="top"> 
    239 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>fn</strong> &#8211; function that return model value</td> 
    240 </tr> 
    241 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">residuals</td> 
    242 </tr> 
    243 </tbody> 
    244 </table> 
    245 </dd></dl> 
    246  
    247 <dl class="method"> 
    248 <dt id="sans.fit.AbstractFitEngine.FitData1D.residuals_deriv"> 
    249 <tt class="descname">residuals_deriv</tt><big>(</big><em>model</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.residuals_deriv" title="Permalink to this definition">¶</a></dt> 
    250 <dd><table class="docutils field-list" frame="void" rules="none"> 
    251 <col class="field-name" /> 
    252 <col class="field-body" /> 
    253 <tbody valign="top"> 
    254 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">residuals derivatives .</td> 
    255 </tr> 
    256 <tr class="field"><th class="field-name">Note :</th><td class="field-body">in this case just return empty array</td> 
    257 </tr> 
    258 </tbody> 
    259 </table> 
    260 </dd></dl> 
    261  
    262 <dl class="method"> 
    263 <dt id="sans.fit.AbstractFitEngine.FitData1D.set_fit_range"> 
    264 <tt class="descname">set_fit_range</tt><big>(</big><em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.set_fit_range" title="Permalink to this definition">¶</a></dt> 
    265 <dd><p>to set the fit range</p> 
    266 </dd></dl> 
    267  
    268 <dl class="method"> 
    269 <dt id="sans.fit.AbstractFitEngine.FitData1D.xaxis"> 
    270 <tt class="descname">xaxis</tt><big>(</big><em>label</em>, <em>unit</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.xaxis" title="Permalink to this definition">¶</a></dt> 
    271 <dd><p>set the x axis label and unit</p> 
    272 </dd></dl> 
    273  
    274 <dl class="method"> 
    275 <dt id="sans.fit.AbstractFitEngine.FitData1D.yaxis"> 
    276 <tt class="descname">yaxis</tt><big>(</big><em>label</em>, <em>unit</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData1D.yaxis" title="Permalink to this definition">¶</a></dt> 
    277 <dd><p>set the y axis label and unit</p> 
    278 </dd></dl> 
    279  
    280 </dd></dl> 
    281  
    282 <dl class="class"> 
    283 <dt id="sans.fit.AbstractFitEngine.FitData2D"> 
    284 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">FitData2D</tt><big>(</big><em>sans_data2d</em>, <em>data=None</em>, <em>err_data=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D" title="Permalink to this definition">¶</a></dt> 
    285 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">DataLoader.data_info.Data2D</span></tt></p> 
    286 <p>Wrapper class  for SANS data</p> 
    287 <dl class="method"> 
    288 <dt id="sans.fit.AbstractFitEngine.FitData2D.add_notes"> 
    289 <tt class="descname">add_notes</tt><big>(</big><em>message=''</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.add_notes" title="Permalink to this definition">¶</a></dt> 
    290 <dd><p>Add notes to datainfo</p> 
    291 </dd></dl> 
    292  
    293 <dl class="method"> 
    294 <dt id="sans.fit.AbstractFitEngine.FitData2D.append_empty_process"> 
    295 <tt class="descname">append_empty_process</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.append_empty_process" title="Permalink to this definition">¶</a></dt> 
    296 <dd></dd></dl> 
    297  
    298 <dl class="method"> 
    299 <dt id="sans.fit.AbstractFitEngine.FitData2D.clone_without_data"> 
    300 <tt class="descname">clone_without_data</tt><big>(</big><em>length=0</em>, <em>clone=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.clone_without_data" title="Permalink to this definition">¶</a></dt> 
    301 <dd><p>Clone the current object, without copying the data (which 
    302 will be filled out by a subsequent operation). 
    303 The data arrays will be initialized to zero.</p> 
    304 <table class="docutils field-list" frame="void" rules="none"> 
    305 <col class="field-name" /> 
    306 <col class="field-body" /> 
    307 <tbody valign="top"> 
    308 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    309 <li><strong>length</strong> &#8211; length of the data array to be initialized</li> 
    310 <li><strong>clone</strong> &#8211; if provided, the data will be copied to clone</li> 
    311 </ul> 
    312 </td> 
    313 </tr> 
    314 </tbody> 
    315 </table> 
    316 </dd></dl> 
    317  
    318 <dl class="method"> 
    319 <dt id="sans.fit.AbstractFitEngine.FitData2D.get_fit_range"> 
    320 <tt class="descname">get_fit_range</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.get_fit_range" title="Permalink to this definition">¶</a></dt> 
    321 <dd><p>return the range of data.x to fit</p> 
    322 </dd></dl> 
    323  
    324 <dl class="method"> 
    325 <dt id="sans.fit.AbstractFitEngine.FitData2D.residuals"> 
    326 <tt class="descname">residuals</tt><big>(</big><em>fn</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.residuals" title="Permalink to this definition">¶</a></dt> 
    327 <dd><p>return the residuals</p> 
    328 </dd></dl> 
    329  
    330 <dl class="method"> 
    331 <dt id="sans.fit.AbstractFitEngine.FitData2D.residuals_deriv"> 
    332 <tt class="descname">residuals_deriv</tt><big>(</big><em>model</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.residuals_deriv" title="Permalink to this definition">¶</a></dt> 
    333 <dd><table class="docutils field-list" frame="void" rules="none"> 
    334 <col class="field-name" /> 
    335 <col class="field-body" /> 
    336 <tbody valign="top"> 
    337 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">residuals derivatives .</td> 
    338 </tr> 
    339 <tr class="field"><th class="field-name">Note :</th><td class="field-body">in this case just return empty array</td> 
    340 </tr> 
    341 </tbody> 
    342 </table> 
    343 </dd></dl> 
    344  
    345 <dl class="method"> 
    346 <dt id="sans.fit.AbstractFitEngine.FitData2D.set_data"> 
    347 <tt class="descname">set_data</tt><big>(</big><em>sans_data2d</em>, <em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.set_data" title="Permalink to this definition">¶</a></dt> 
    348 <dd><p>Determine the correct qx_data and qy_data within range to fit</p> 
    349 </dd></dl> 
    350  
    351 <dl class="method"> 
    352 <dt id="sans.fit.AbstractFitEngine.FitData2D.set_fit_range"> 
    353 <tt class="descname">set_fit_range</tt><big>(</big><em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.set_fit_range" title="Permalink to this definition">¶</a></dt> 
    354 <dd><p>to set the fit range</p> 
    355 </dd></dl> 
    356  
    357 <dl class="method"> 
    358 <dt id="sans.fit.AbstractFitEngine.FitData2D.set_smearer"> 
    359 <tt class="descname">set_smearer</tt><big>(</big><em>smearer</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.set_smearer" title="Permalink to this definition">¶</a></dt> 
    360 <dd><p>Set smearer</p> 
    361 </dd></dl> 
    362  
    363 <dl class="method"> 
    364 <dt id="sans.fit.AbstractFitEngine.FitData2D.xaxis"> 
    365 <tt class="descname">xaxis</tt><big>(</big><em>label</em>, <em>unit</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.xaxis" title="Permalink to this definition">¶</a></dt> 
    366 <dd><p>set the x axis label and unit</p> 
    367 </dd></dl> 
    368  
    369 <dl class="method"> 
    370 <dt id="sans.fit.AbstractFitEngine.FitData2D.yaxis"> 
    371 <tt class="descname">yaxis</tt><big>(</big><em>label</em>, <em>unit</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.yaxis" title="Permalink to this definition">¶</a></dt> 
    372 <dd><p>set the y axis label and unit</p> 
    373 </dd></dl> 
    374  
    375 <dl class="method"> 
    376 <dt id="sans.fit.AbstractFitEngine.FitData2D.zaxis"> 
    377 <tt class="descname">zaxis</tt><big>(</big><em>label</em>, <em>unit</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitData2D.zaxis" title="Permalink to this definition">¶</a></dt> 
    378 <dd><p>set the z axis label and unit</p> 
    379 </dd></dl> 
    380  
    381 </dd></dl> 
    382  
    383 <dl class="class"> 
    384 <dt id="sans.fit.AbstractFitEngine.FitEngine"> 
    385 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">FitEngine</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine" title="Permalink to this definition">¶</a></dt> 
    386 <dd><dl class="method"> 
    387 <dt id="sans.fit.AbstractFitEngine.FitEngine.get_model"> 
    388 <tt class="descname">get_model</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine.get_model" title="Permalink to this definition">¶</a></dt> 
    389 <dd><table class="docutils field-list" frame="void" rules="none"> 
    390 <col class="field-name" /> 
    391 <col class="field-body" /> 
    392 <tbody valign="top"> 
    393 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; id is key in the dictionary containing the model to return</td> 
    394 </tr> 
    395 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">a model at this id or None if no FitArrange element was  
    396 created with this id</td> 
    397 </tr> 
    398 </tbody> 
    399 </table> 
    400 </dd></dl> 
    401  
    402 <dl class="method"> 
    403 <dt id="sans.fit.AbstractFitEngine.FitEngine.get_problem_to_fit"> 
    404 <tt class="descname">get_problem_to_fit</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine.get_problem_to_fit" title="Permalink to this definition">¶</a></dt> 
    405 <dd><p>return the self.selected value of the fit problem of id</p> 
    406 <table class="docutils field-list" frame="void" rules="none"> 
    407 <col class="field-name" /> 
    408 <col class="field-body" /> 
    409 <tbody valign="top"> 
    410 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; the id of the problem</td> 
    411 </tr> 
    412 </tbody> 
    413 </table> 
    414 </dd></dl> 
    415  
    416 <dl class="method"> 
    417 <dt id="sans.fit.AbstractFitEngine.FitEngine.remove_fit_problem"> 
    418 <tt class="descname">remove_fit_problem</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine.remove_fit_problem" title="Permalink to this definition">¶</a></dt> 
    419 <dd><p>remove   fitarrange in id</p> 
    420 </dd></dl> 
    421  
    422 <dl class="method"> 
    423 <dt id="sans.fit.AbstractFitEngine.FitEngine.select_problem_for_fit"> 
    424 <tt class="descname">select_problem_for_fit</tt><big>(</big><em>id</em>, <em>value</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine.select_problem_for_fit" title="Permalink to this definition">¶</a></dt> 
    425 <dd><p>select a couple of model and data at the id position in dictionary 
    426 and set in self.selected value to value</p> 
    427 <table class="docutils field-list" frame="void" rules="none"> 
    428 <col class="field-name" /> 
    429 <col class="field-body" /> 
    430 <tbody valign="top"> 
    431 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>value</strong> &#8211; the value to allow fitting.  
    432 can only have the value one or zero</td> 
    433 </tr> 
    434 </tbody> 
    435 </table> 
    436 </dd></dl> 
    437  
    438 <dl class="method"> 
    439 <dt id="sans.fit.AbstractFitEngine.FitEngine.set_data"> 
    440 <tt class="descname">set_data</tt><big>(</big><em>data</em>, <em>id</em>, <em>smearer=None</em>, <em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine.set_data" title="Permalink to this definition">¶</a></dt> 
    441 <dd><p>Receives plottable, creates a list of data to fit,set data 
    442 in a FitArrange object and adds that object in a dictionary  
    443 with key id.</p> 
    444 <table class="docutils field-list" frame="void" rules="none"> 
    445 <col class="field-name" /> 
    446 <col class="field-body" /> 
    447 <tbody valign="top"> 
    448 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    449 <li><strong>data</strong> &#8211; data added</li> 
    450 <li><strong>id</strong> &#8211; unique key corresponding to a fitArrange object with data</li> 
    451 </ul> 
    452 </td> 
    453 </tr> 
    454 </tbody> 
    455 </table> 
    456 </dd></dl> 
    457  
    458 <dl class="method"> 
    459 <dt id="sans.fit.AbstractFitEngine.FitEngine.set_model"> 
    460 <tt class="descname">set_model</tt><big>(</big><em>model</em>, <em>id</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span>, <em>constraints=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.FitEngine.set_model" title="Permalink to this definition">¶</a></dt> 
    461 <dd><p>set a model on a given  in the fit engine.</p> 
    462 <table class="docutils field-list" frame="void" rules="none"> 
    463 <col class="field-name" /> 
    464 <col class="field-body" /> 
    465 <tbody valign="top"> 
    466 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>model</strong> &#8211; sans.models type</td> 
    467 </tr> 
    468 </tbody> 
    469 </table> 
    470 <dl class="docutils"> 
    471 <dt>:param <span class="classifier-delimiter">:</span> <span class="classifier">is the key of the fitArrange dictionary where model is </span></dt> 
    472 <dd>saved as a value</dd> 
    473 </dl> 
    474 <table class="docutils field-list" frame="void" rules="none"> 
    475 <col class="field-name" /> 
    476 <col class="field-body" /> 
    477 <tbody valign="top"> 
    478 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> 
    479 <li><strong>pars</strong> &#8211; the list of parameters to fit</li> 
    480 <li><strong>constraints</strong> &#8211; <p>list of  
    481 tuple (name of parameter, value of parameters) 
    482 the value of parameter must be a string to constraint 2 different 
    483 parameters. 
    484 Example:   
    485 we want to fit 2 model M1 and M2 both have parameters A and B. 
    486 constraints can be:</p> 
    487 <blockquote> 
    488 <div>constraints = [(M1.A, M2.B+2), (M1.B= M2.A <a href="#id1"><span class="problematic" id="id2">*</span></a>5),...,]</div></blockquote> 
    489 </li> 
    490 </ul> 
    491 </td> 
    492 </tr> 
    493 <tr class="field"><th class="field-name">Note :</th><td class="field-body"><p class="first last">pars must contains only name of existing model&#8217;s parameters</p> 
    494 </td> 
    495 </tr> 
    496 </tbody> 
    497 </table> 
    498 </dd></dl> 
    499  
    500 </dd></dl> 
    501  
    502 <dl class="class"> 
    503 <dt id="sans.fit.AbstractFitEngine.Model"> 
    504 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">Model</tt><big>(</big><em>sans_model</em>, <em>**kw</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.Model" title="Permalink to this definition">¶</a></dt> 
    505 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">park.model.Model</span></tt></p> 
    506 <p>PARK wrapper for SANS models.</p> 
    507 <dl class="method"> 
    508 <dt id="sans.fit.AbstractFitEngine.Model.eval"> 
    509 <tt class="descname">eval</tt><big>(</big><em>x</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.Model.eval" title="Permalink to this definition">¶</a></dt> 
    510 <dd><p>override eval method of park model.</p> 
    511 <table class="docutils field-list" frame="void" rules="none"> 
    512 <col class="field-name" /> 
    513 <col class="field-body" /> 
    514 <tbody valign="top"> 
    515 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>x</strong> &#8211; the x value used to compute a function</td> 
    516 </tr> 
    517 </tbody> 
    518 </table> 
    519 </dd></dl> 
    520  
    521 <dl class="method"> 
    522 <dt id="sans.fit.AbstractFitEngine.Model.eval_derivs"> 
    523 <tt class="descname">eval_derivs</tt><big>(</big><em>x</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.Model.eval_derivs" title="Permalink to this definition">¶</a></dt> 
    524 <dd><p>Evaluate the model and derivatives wrt pars at x.</p> 
    525 <p>pars is a list of the names of the parameters for which derivatives 
    526 are desired.</p> 
    527 <p>This method needs to be specialized in the model to evaluate the 
    528 model function.  Alternatively, the model can implement is own 
    529 version of residuals which calculates the residuals directly 
    530 instead of calling eval.</p> 
    531 </dd></dl> 
    532  
    533 <dl class="method"> 
    534 <dt id="sans.fit.AbstractFitEngine.Model.get_params"> 
    535 <tt class="descname">get_params</tt><big>(</big><em>fitparams</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.Model.get_params" title="Permalink to this definition">¶</a></dt> 
    536 <dd><p>return a list of value of paramter to fit</p> 
    537 <table class="docutils field-list" frame="void" rules="none"> 
    538 <col class="field-name" /> 
    539 <col class="field-body" /> 
    540 <tbody valign="top"> 
    541 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>fitparams</strong> &#8211; list of paramaters name to fit</td> 
    542 </tr> 
    543 </tbody> 
    544 </table> 
    545 </dd></dl> 
    546  
    547 <dl class="method"> 
    548 <dt id="sans.fit.AbstractFitEngine.Model.set"> 
    549 <tt class="descname">set</tt><big>(</big><em>**kw</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.Model.set" title="Permalink to this definition">¶</a></dt> 
    550 <dd><p>Set the initial value for a set of parameters.</p> 
    551 <p>E.g., model.set(width=3,center=5)</p> 
    552 </dd></dl> 
    553  
    554 <dl class="method"> 
    555 <dt id="sans.fit.AbstractFitEngine.Model.set_params"> 
    556 <tt class="descname">set_params</tt><big>(</big><em>paramlist</em>, <em>params</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.Model.set_params" title="Permalink to this definition">¶</a></dt> 
    557 <dd><p>Set value for parameters to fit</p> 
    558 <table class="docutils field-list" frame="void" rules="none"> 
    559 <col class="field-name" /> 
    560 <col class="field-body" /> 
    561 <tbody valign="top"> 
    562 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>params</strong> &#8211; list of value for parameters to fit</td> 
    563 </tr> 
    564 </tbody> 
    565 </table> 
    566 </dd></dl> 
    567  
    568 </dd></dl> 
    569  
    570 <dl class="class"> 
    571 <dt id="sans.fit.AbstractFitEngine.SansAssembly"> 
    572 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">SansAssembly</tt><big>(</big><em>paramlist</em>, <em>model=None</em>, <em>data=None</em>, <em>fitresult=None</em>, <em>handler=None</em>, <em>curr_thread=None</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansAssembly" title="Permalink to this definition">¶</a></dt> 
    573 <dd><p>Sans Assembly class a class wrapper to be call in optimizer.leastsq method</p> 
    574 <dl class="method"> 
    575 <dt id="sans.fit.AbstractFitEngine.SansAssembly.check_param_range"> 
    576 <tt class="descname">check_param_range</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansAssembly.check_param_range" title="Permalink to this definition">¶</a></dt> 
    577 <dd><p>Check the lower and upper bound of the parameter value 
    578 and set res to the inf if the value is outside of the 
    579 range 
    580 :limitation: the initial values must be within range.</p> 
    581 </dd></dl> 
    582  
    583 <dl class="method"> 
    584 <dt id="sans.fit.AbstractFitEngine.SansAssembly.chisq"> 
    585 <tt class="descname">chisq</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansAssembly.chisq" title="Permalink to this definition">¶</a></dt> 
    586 <dd><p>Calculates chi^2</p> 
    587 <table class="docutils field-list" frame="void" rules="none"> 
    588 <col class="field-name" /> 
    589 <col class="field-body" /> 
    590 <tbody valign="top"> 
    591 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>params</strong> &#8211; list of parameter values</td> 
    592 </tr> 
    593 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">chi^2</td> 
    594 </tr> 
    595 </tbody> 
    596 </table> 
    597 </dd></dl> 
    598  
    599 </dd></dl> 
    600  
    601 <dl class="class"> 
    602 <dt id="sans.fit.AbstractFitEngine.SansParameter"> 
    603 <em class="property">class </em><tt class="descclassname">sans.fit.AbstractFitEngine.</tt><tt class="descname">SansParameter</tt><big>(</big><em>name</em>, <em>model</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter" title="Permalink to this definition">¶</a></dt> 
    604 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">park.parameter.Parameter</span></tt></p> 
    605 <p>SANS model parameters for use in the PARK fitting service. 
    606 The parameter attribute value is redirected to the underlying 
    607 parameter value in the SANS model.</p> 
    608 <dl class="method"> 
    609 <dt id="sans.fit.AbstractFitEngine.SansParameter.get"> 
    610 <tt class="descname">get</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.get" title="Permalink to this definition">¶</a></dt> 
    611 <dd><p>Return the current value for a parameter.</p> 
    612 </dd></dl> 
    613  
    614 <dl class="method"> 
    615 <dt id="sans.fit.AbstractFitEngine.SansParameter.get_name"> 
    616 <tt class="descname">get_name</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.get_name" title="Permalink to this definition">¶</a></dt> 
    617 <dd></dd></dl> 
    618  
    619 <dl class="method"> 
    620 <dt id="sans.fit.AbstractFitEngine.SansParameter.iscomputed"> 
    621 <tt class="descname">iscomputed</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.iscomputed" title="Permalink to this definition">¶</a></dt> 
    622 <dd></dd></dl> 
    623  
    624 <dl class="method"> 
    625 <dt id="sans.fit.AbstractFitEngine.SansParameter.isfeasible"> 
    626 <tt class="descname">isfeasible</tt><big>(</big><em>value</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.isfeasible" title="Permalink to this definition">¶</a></dt> 
    627 <dd><p>Return true if the value is in the range</p> 
    628 </dd></dl> 
    629  
    630 <dl class="method"> 
    631 <dt id="sans.fit.AbstractFitEngine.SansParameter.isfitted"> 
    632 <tt class="descname">isfitted</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.isfitted" title="Permalink to this definition">¶</a></dt> 
    633 <dd></dd></dl> 
    634  
    635 <dl class="method"> 
    636 <dt id="sans.fit.AbstractFitEngine.SansParameter.isfixed"> 
    637 <tt class="descname">isfixed</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.isfixed" title="Permalink to this definition">¶</a></dt> 
    638 <dd></dd></dl> 
    639  
    640 <dl class="method"> 
    641 <dt id="sans.fit.AbstractFitEngine.SansParameter.isrestrained"> 
    642 <tt class="descname">isrestrained</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.isrestrained" title="Permalink to this definition">¶</a></dt> 
    643 <dd></dd></dl> 
    644  
    645 <dl class="attribute"> 
    646 <dt id="sans.fit.AbstractFitEngine.SansParameter.name"> 
    647 <tt class="descname">name</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.name" title="Permalink to this definition">¶</a></dt> 
    648 <dd><p>parameter name</p> 
    649 </dd></dl> 
    650  
    651 <dl class="attribute"> 
    652 <dt id="sans.fit.AbstractFitEngine.SansParameter.range"> 
    653 <tt class="descname">range</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.range" title="Permalink to this definition">¶</a></dt> 
    654 <dd><p>Override _getrange of park parameter 
    655 return the range of parameter</p> 
    656 </dd></dl> 
    657  
    658 <dl class="method"> 
    659 <dt id="sans.fit.AbstractFitEngine.SansParameter.set"> 
    660 <tt class="descname">set</tt><big>(</big><em>value</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.set" title="Permalink to this definition">¶</a></dt> 
    661 <dd><p>Set a parameter to a value, a range or an expression.  If it is a value, 
    662 the parameter will be fixed for the fit.  If it is a range, the value 
    663 will be varying for the fit.  If it is an expression, the parameter will 
    664 be calculated from the values of other parameters in the fit.</p> 
    665 <p>Raises ValueError if the value could not be interpreted.</p> 
    666 </dd></dl> 
    667  
    668 <dl class="method"> 
    669 <dt id="sans.fit.AbstractFitEngine.SansParameter.setprefix"> 
    670 <tt class="descname">setprefix</tt><big>(</big><em>prefix</em><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.setprefix" title="Permalink to this definition">¶</a></dt> 
    671 <dd><p>Set the full path to the parameter as used in expressions involving 
    672 the parameter name.</p> 
    673 </dd></dl> 
    674  
    675 <dl class="method"> 
    676 <dt id="sans.fit.AbstractFitEngine.SansParameter.summarize"> 
    677 <tt class="descname">summarize</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.summarize" title="Permalink to this definition">¶</a></dt> 
    678 <dd><p>Return parameter range string.</p> 
    679 <p>E.g.,  &#8221;       Gold .....|.... 5.2043 in [2,7]&#8221;</p> 
    680 </dd></dl> 
    681  
    682 <dl class="attribute"> 
    683 <dt id="sans.fit.AbstractFitEngine.SansParameter.value"> 
    684 <tt class="descname">value</tt><a class="headerlink" href="#sans.fit.AbstractFitEngine.SansParameter.value" title="Permalink to this definition">¶</a></dt> 
    685 <dd><p>override the _getvalue of park parameter</p> 
    686 <p>:return value the parameter associates with self.name</p> 
    687 </dd></dl> 
    688  
    689 </dd></dl> 
    690  
     55<div class="section" id="mod-sans-fit-abstractfitengine"> 
     56<h2>:mod:` sans.fit.AbstractFitEngine`<a class="headerlink" href="#mod-sans-fit-abstractfitengine" title="Permalink to this headline">¶</a></h2> 
    69157</div> 
    69258</div> 
    … …  
    70167  <ul> 
    70268<li><a class="reference internal" href="#">AbstractFitEngine</a><ul> 
    703 <li><a class="reference internal" href="#module-sans.fit.AbstractFitEngine">:mod:` sans.fit.AbstractFitEngine`</a></li> 
     69<li><a class="reference internal" href="#mod-sans-fit-abstractfitengine">:mod:` sans.fit.AbstractFitEngine`</a></li> 
    70470</ul> 
    70571</li> 
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    742108        <li class="right" > 
    743           <a href="../py-modindex.html" title="Python Module Index" 
    744              >modules</a> |</li> 
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    3636             accesskey="I">index</a></li> 
    3737        <li class="right" > 
    38           <a href="../py-modindex.html" title="Python Module Index" 
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    … …  
    5653  <div class="section" id="fitting"> 
    5754<h1>Fitting<a class="headerlink" href="#fitting" title="Permalink to this headline">¶</a></h1> 
    58 <div class="section" id="module-sans.fit.Fitting"> 
    59 <span id="mod-sans-fit-fitting"></span><h2>:mod:` sans.fit.Fitting`<a class="headerlink" href="#module-sans.fit.Fitting" title="Permalink to this headline">¶</a></h2> 
    60 <p>Class Fit contains ScipyFit and ParkFit methods declaration 
    61 allows to create instance of type ScipyFit or ParkFit to perform either 
    62 a park fit or a scipy fit.</p> 
    63 <dl class="class"> 
    64 <dt id="sans.fit.Fitting.Fit"> 
    65 <em class="property">class </em><tt class="descclassname">sans.fit.Fitting.</tt><tt class="descname">Fit</tt><big>(</big><em>engine='scipy'</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit" title="Permalink to this definition">¶</a></dt> 
    66 <dd><p>Wrap class that allows to select the fitting type.this class  
    67 can be used as follow :</p> 
    68 <div class="highlight-python"><div class="highlight"><pre><span class="kn">from</span> <span class="nn">sans.fit.Fitting</span> <span class="kn">import</span> <span class="n">Fit</span> 
    69 <span class="n">fitter</span><span class="o">=</span> <span class="n">Fit</span><span class="p">()</span> 
    70 <span class="n">fitter</span><span class="o">.</span><span class="n">fit_engine</span><span class="p">(</span><span class="s">&#39;scipy&#39;</span><span class="p">)</span> <span class="ow">or</span> <span class="n">fitter</span><span class="o">.</span><span class="n">fit_engine</span><span class="p">(</span><span class="s">&#39;park&#39;</span><span class="p">)</span> 
    71 <span class="n">engine</span> <span class="o">=</span> <span class="n">fitter</span><span class="o">.</span><span class="n">returnEngine</span><span class="p">()</span> 
    72 <span class="n">engine</span><span class="o">.</span><span class="n">set_data</span><span class="p">(</span><span class="n">data</span><span class="p">,</span><span class="nb">id</span><span class="p">)</span> 
    73 <span class="n">engine</span><span class="o">.</span><span class="n">set_param</span><span class="p">(</span> <span class="n">model</span><span class="p">,</span><span class="n">model</span><span class="o">.</span><span class="n">name</span><span class="p">,</span> <span class="n">pars</span><span class="p">)</span> 
    74 <span class="n">engine</span><span class="o">.</span><span class="n">set_model</span><span class="p">(</span><span class="n">model</span><span class="p">,</span><span class="nb">id</span><span class="p">)</span> 
    75  
    76 <span class="n">chisqr1</span><span class="p">,</span> <span class="n">out1</span><span class="p">,</span> <span class="n">cov1</span><span class="o">=</span><span class="n">engine</span><span class="o">.</span><span class="n">fit</span><span class="p">(</span><span class="n">pars</span><span class="p">,</span><span class="n">qmin</span><span class="p">,</span><span class="n">qmax</span><span class="p">)</span> 
    77 </pre></div> 
    78 </div> 
    79 <dl class="method"> 
    80 <dt id="sans.fit.Fitting.Fit.fit"> 
    81 <tt class="descname">fit</tt><big>(</big><em>q=None</em>, <em>handler=None</em>, <em>curr_thread=None</em>, <em>ftol=1.49012e-008</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.fit" title="Permalink to this definition">¶</a></dt> 
    82 <dd><p>Perform the fit</p> 
    83 </dd></dl> 
    84  
    85 <dl class="method"> 
    86 <dt id="sans.fit.Fitting.Fit.get_model"> 
    87 <tt class="descname">get_model</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.get_model" title="Permalink to this definition">¶</a></dt> 
    88 <dd><p>return list of data</p> 
    89 </dd></dl> 
    90  
    91 <dl class="method"> 
    92 <dt id="sans.fit.Fitting.Fit.get_problem_to_fit"> 
    93 <tt class="descname">get_problem_to_fit</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.get_problem_to_fit" title="Permalink to this definition">¶</a></dt> 
    94 <dd><p>return the self.selected value of the fit problem of id</p> 
    95 <table class="docutils field-list" frame="void" rules="none"> 
    96 <col class="field-name" /> 
    97 <col class="field-body" /> 
    98 <tbody valign="top"> 
    99 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; the id of the problem</td> 
    100 </tr> 
    101 </tbody> 
    102 </table> 
    103 </dd></dl> 
    104  
    105 <dl class="method"> 
    106 <dt id="sans.fit.Fitting.Fit.remove_fit_problem"> 
    107 <tt class="descname">remove_fit_problem</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.remove_fit_problem" title="Permalink to this definition">¶</a></dt> 
    108 <dd><p>remove fitarrange in id</p> 
    109 </dd></dl> 
    110  
    111 <dl class="method"> 
    112 <dt id="sans.fit.Fitting.Fit.select_problem_for_fit"> 
    113 <tt class="descname">select_problem_for_fit</tt><big>(</big><em>id</em>, <em>value</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.select_problem_for_fit" title="Permalink to this definition">¶</a></dt> 
    114 <dd><p>select a couple of model and data at the id position in dictionary 
    115 and set in self.selected value to value</p> 
    116 <table class="docutils field-list" frame="void" rules="none"> 
    117 <col class="field-name" /> 
    118 <col class="field-body" /> 
    119 <tbody valign="top"> 
    120 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>value</strong> &#8211; the value to allow fitting. 
    121 can only have the value one or zero</td> 
    122 </tr> 
    123 </tbody> 
    124 </table> 
    125 </dd></dl> 
    126  
    127 <dl class="method"> 
    128 <dt id="sans.fit.Fitting.Fit.set_data"> 
    129 <tt class="descname">set_data</tt><big>(</big><em>data</em>, <em>id</em>, <em>smearer=None</em>, <em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.set_data" title="Permalink to this definition">¶</a></dt> 
    130 <dd><p>Store data to fit at the psotion id of the fit engine</p> 
    131 <table class="docutils field-list" frame="void" rules="none"> 
    132 <col class="field-name" /> 
    133 <col class="field-body" /> 
    134 <tbody valign="top"> 
    135 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    136 <li><strong>data</strong> &#8211; data to fit</li> 
    137 <li><strong>smearer</strong> &#8211; smearerobject to smear data</li> 
    138 <li><strong>qmin</strong> &#8211; the minimum q range to fit</li> 
    139 <li><strong>qmax</strong> &#8211; the minimum q range to fit</li> 
    140 </ul> 
    141 </td> 
    142 </tr> 
    143 </tbody> 
    144 </table> 
    145 </dd></dl> 
    146  
    147 <dl class="method"> 
    148 <dt id="sans.fit.Fitting.Fit.set_engine"> 
    149 <tt class="descname">set_engine</tt><big>(</big><em>word</em><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.set_engine" title="Permalink to this definition">¶</a></dt> 
    150 <dd><p>Select the type of Fit</p> 
    151 <table class="docutils field-list" frame="void" rules="none"> 
    152 <col class="field-name" /> 
    153 <col class="field-body" /> 
    154 <tbody valign="top"> 
    155 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>word</strong> &#8211; the keyword to select the fit type</td> 
    156 </tr> 
    157 <tr class="field"><th class="field-name">Raise :</th><td class="field-body">if the user does not enter &#8216;scipy&#8217; or &#8216;park&#8217;, 
    158 a valueError is raised</td> 
    159 </tr> 
    160 </tbody> 
    161 </table> 
    162 </dd></dl> 
    163  
    164 <dl class="method"> 
    165 <dt id="sans.fit.Fitting.Fit.set_model"> 
    166 <tt class="descname">set_model</tt><big>(</big><em>model</em>, <em>id</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span>, <em>constraints=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.Fitting.Fit.set_model" title="Permalink to this definition">¶</a></dt> 
    167 <dd><p>store a model model to fit at the position id of the fit engine</p> 
    168 </dd></dl> 
    169  
    170 </dd></dl> 
    171  
     55<div class="section" id="mod-sans-fit-fitting"> 
     56<h2>:mod:` sans.fit.Fitting`<a class="headerlink" href="#mod-sans-fit-fitting" title="Permalink to this headline">¶</a></h2> 
    17257</div> 
    17358</div> 
    … …  
    18267  <ul> 
    18368<li><a class="reference internal" href="#">Fitting</a><ul> 
    184 <li><a class="reference internal" href="#module-sans.fit.Fitting">:mod:` sans.fit.Fitting`</a></li> 
     69<li><a class="reference internal" href="#mod-sans-fit-fitting">:mod:` sans.fit.Fitting`</a></li> 
    18570</ul> 
    18671</li> 
    … …  
    222107             >index</a></li> 
    223108        <li class="right" > 
    224           <a href="../py-modindex.html" title="Python Module Index" 
    225              >modules</a> |</li> 
    226         <li class="right" > 
    227109          <a href="ParkFitting.html" title="ParkFitting" 
    228110             >next</a> |</li> 

  • park_integration/docs/sphinx/_build/html/api/ParkFitting.html

    r0c3003d r41517a6  
    3636             accesskey="I">index</a></li> 
    3737        <li class="right" > 
    38           <a href="../py-modindex.html" title="Python Module Index" 
    39              >modules</a> |</li> 
    40         <li class="right" > 
    4138          <a href="ScipyFitting.html" title="ScipyFitting" 
    4239             accesskey="N">next</a> |</li> 
    … …  
    5653  <div class="section" id="parkfitting"> 
    5754<h1>ParkFitting<a class="headerlink" href="#parkfitting" title="Permalink to this headline">¶</a></h1> 
    58 <div class="section" id="module-sans.fit.ParkFitting"> 
    59 <span id="mod-sans-fit-parkfitting"></span><h2>:mod:` sans.fit.ParkFitting`<a class="headerlink" href="#module-sans.fit.ParkFitting" title="Permalink to this headline">¶</a></h2> 
    60 <p>ParkFitting module contains SansParameter,Model,Data 
    61 FitArrange, ParkFit,Parameter classes.All listed classes work together 
    62 to perform a simple fit with park optimizer.</p> 
    63 <dl class="class"> 
    64 <dt id="sans.fit.ParkFitting.MyAssembly"> 
    65 <em class="property">class </em><tt class="descclassname">sans.fit.ParkFitting.</tt><tt class="descname">MyAssembly</tt><big>(</big><em>models</em>, <em>curr_thread=None</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly" title="Permalink to this definition">¶</a></dt> 
    66 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">park.assembly.Assembly</span></tt></p> 
    67 <dl class="method"> 
    68 <dt id="sans.fit.ParkFitting.MyAssembly.abort"> 
    69 <tt class="descname">abort</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.abort" title="Permalink to this definition">¶</a></dt> 
    70 <dd><p>Interrupt the current function evaluation.</p> 
    71 <p>Forward this to the currently executing model if possible.</p> 
    72 </dd></dl> 
    73  
    74 <dl class="method"> 
    75 <dt id="sans.fit.ParkFitting.MyAssembly.all_results"> 
    76 <tt class="descname">all_results</tt><big>(</big><em>result</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.all_results" title="Permalink to this definition">¶</a></dt> 
    77 <dd><p>Extend result from the fit with the calculated parameters.</p> 
    78 </dd></dl> 
    79  
    80 <dl class="method"> 
    81 <dt id="sans.fit.ParkFitting.MyAssembly.append"> 
    82 <tt class="descname">append</tt><big>(</big><em>fitness</em>, <em>weight=1.0</em>, <em>isfitted=True</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.append" title="Permalink to this definition">¶</a></dt> 
    83 <dd><p>Add a model to the end of set.</p> 
    84 <table class="docutils field-list" frame="void" rules="none"> 
    85 <col class="field-name" /> 
    86 <col class="field-body" /> 
    87 <tbody valign="top"> 
    88 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>fitness</strong> &#8211; the fitting model</td> 
    89 </tr> 
    90 </tbody> 
    91 </table> 
    92 <p>The fitting model can be an instance of <cite>park.assembly.Fitness</cite>, 
    93 or a tuple of (<cite>park.model.Model</cite>,`park.data.Data1D`) 
    94 :param weight: model weighting (usually 1.0) 
    95 :param isfitted: whether model should be fit (equivalent to weight 0.)</p> 
    96 </dd></dl> 
    97  
    98 <dl class="method"> 
    99 <dt id="sans.fit.ParkFitting.MyAssembly.cov"> 
    100 <tt class="descname">cov</tt><big>(</big><em>pvec</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.cov" title="Permalink to this definition">¶</a></dt> 
    101 <dd><p>Return the covariance matrix inv(J&#8217;J) at point p.</p> 
    102 </dd></dl> 
    103  
    104 <dl class="method"> 
    105 <dt id="sans.fit.ParkFitting.MyAssembly.eval"> 
    106 <tt class="descname">eval</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.eval" title="Permalink to this definition">¶</a></dt> 
    107 <dd><p>Recalculate the theory functions, and from them, the 
    108 residuals and chisq.</p> 
    109 <table class="docutils field-list" frame="void" rules="none"> 
    110 <col class="field-name" /> 
    111 <col class="field-body" /> 
    112 <tbody valign="top"> 
    113 <tr class="field"><th class="field-name">Note :</th><td class="field-body">Call this after the parameters have been updated.</td> 
    114 </tr> 
    115 </tbody> 
    116 </table> 
    117 </dd></dl> 
    118  
    119 <dl class="method"> 
    120 <dt id="sans.fit.ParkFitting.MyAssembly.fit_parameters"> 
    121 <tt class="descname">fit_parameters</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.fit_parameters" title="Permalink to this definition">¶</a></dt> 
    122 <dd><p>Return an alphabetical list of the fitting parameters.</p> 
    123 <p>This function is called once at the beginning of a fit, 
    124 and serves as a convenient place to precalculate what 
    125 can be precalculated such as the set of fitting parameters 
    126 and the parameter expressions evaluator.</p> 
    127 </dd></dl> 
    128  
    129 <dl class="method"> 
    130 <dt id="sans.fit.ParkFitting.MyAssembly.fresiduals"> 
    131 <tt class="descname">fresiduals</tt><big>(</big><em>pvec</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.fresiduals" title="Permalink to this definition">¶</a></dt> 
    132 <dd></dd></dl> 
    133  
    134 <dl class="method"> 
    135 <dt id="sans.fit.ParkFitting.MyAssembly.insert"> 
    136 <tt class="descname">insert</tt><big>(</big><em>idx</em>, <em>fitness</em>, <em>weight=1.0</em>, <em>isfitted=True</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.insert" title="Permalink to this definition">¶</a></dt> 
    137 <dd><p>Add a model to a particular position in the set.</p> 
    138 </dd></dl> 
    139  
    140 <dl class="method"> 
    141 <dt id="sans.fit.ParkFitting.MyAssembly.isfeasible"> 
    142 <tt class="descname">isfeasible</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.isfeasible" title="Permalink to this definition">¶</a></dt> 
    143 <dd><p>Returns true if the parameter set is in a feasible region of the 
    144 modeling space.</p> 
    145 </dd></dl> 
    146  
    147 <dl class="method"> 
    148 <dt id="sans.fit.ParkFitting.MyAssembly.isfitted"> 
    149 <tt class="descname">isfitted</tt><big>(</big><em>idx</em>, <em>value=None</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.isfitted" title="Permalink to this definition">¶</a></dt> 
    150 <dd><p>Query if a particular model is fitted.</p> 
    151 <p>Set isfitted to value if value is supplied.</p> 
    152 <table class="docutils field-list" frame="void" rules="none"> 
    153 <col class="field-name" /> 
    154 <col class="field-body" /> 
    155 <tbody valign="top"> 
    156 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    157 <li><strong>idx</strong> (<em>integer</em>) &#8211; model number</li> 
    158 <li><strong>value</strong> &#8211; </li> 
    159 </ul> 
    160 </td> 
    161 </tr> 
    162 </tbody> 
    163 </table> 
    164 </dd></dl> 
    165  
    166 <dl class="method"> 
    167 <dt id="sans.fit.ParkFitting.MyAssembly.jacobian"> 
    168 <tt class="descname">jacobian</tt><big>(</big><em>pvec</em>, <em>step=1e-008</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.jacobian" title="Permalink to this definition">¶</a></dt> 
    169 <dd><p>Returns the derivative wrt the fit parameters at point p.</p> 
    170 <p>Numeric derivatives are calculated based on step, where step is 
    171 the portion of the total range for parameter j, or the portion of 
    172 point value p_j if the range on parameter j is infinite.</p> 
    173 </dd></dl> 
    174  
    175 <dl class="method"> 
    176 <dt id="sans.fit.ParkFitting.MyAssembly.result"> 
    177 <tt class="descname">result</tt><big>(</big><em>status='step'</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.result" title="Permalink to this definition">¶</a></dt> 
    178 <dd><p>Details to send back to the fitting client on an improved fit.</p> 
    179 <p>status is &#8216;start&#8217;, &#8216;step&#8217; or &#8216;end&#8217; depending if this is the 
    180 first result to return, an improved result, or the final result.</p> 
    181 <p>[Not implemented]</p> 
    182 </dd></dl> 
    183  
    184 <dl class="method"> 
    185 <dt id="sans.fit.ParkFitting.MyAssembly.set_result"> 
    186 <tt class="descname">set_result</tt><big>(</big><em>result</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.set_result" title="Permalink to this definition">¶</a></dt> 
    187 <dd><p>Set the parameters resulting from the fit into the parameter set, 
    188 and update the calculated expression.</p> 
    189 <p>The parameter values may be retrieved by walking the assembly.parameterset 
    190 tree, checking each parameter for isfitted, iscomputed, or isfixed. 
    191 For example:</p> 
    192 <div class="highlight-python"><div class="highlight"><pre><span class="n">assembly</span><span class="o">.</span><span class="n">set_result</span><span class="p">(</span><span class="n">result</span><span class="p">)</span> 
    193 <span class="k">for</span> <span class="n">p</span> <span class="ow">in</span> <span class="n">assembly</span><span class="o">.</span><span class="n">parameterset</span><span class="o">.</span><span class="n">flatten</span><span class="p">():</span> 
    194     <span class="k">if</span> <span class="n">p</span><span class="o">.</span><span class="n">isfitted</span><span class="p">():</span> 
    195         <span class="k">print</span> <span class="s">&quot;</span><span class="si">%s</span><span class="s"> </span><span class="si">%g</span><span class="s"> in [</span><span class="si">%g</span><span class="s">,</span><span class="si">%g</span><span class="s">]&quot;</span><span class="o">%</span><span class="p">(</span><span class="n">p</span><span class="o">.</span><span class="n">path</span><span class="p">,</span><span class="n">p</span><span class="o">.</span><span class="n">value</span><span class="p">,</span><span class="n">p</span><span class="o">.</span><span class="n">range</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span><span class="n">p</span><span class="o">.</span><span class="n">range</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span> 
    196     <span class="k">elif</span> <span class="n">p</span><span class="o">.</span><span class="n">iscomputed</span><span class="p">():</span> 
    197         <span class="k">print</span> <span class="s">&quot;</span><span class="si">%s</span><span class="s"> computed as </span><span class="si">%g</span><span class="s">&quot;</span><span class="o">%</span><span class="p">(</span><span class="n">p</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">p</span><span class="o">.</span><span class="n">value</span><span class="p">)</span> 
    198 </pre></div> 
    199 </div> 
    200 <p>This does not calculate the function or the residuals for these parameters. 
    201 You can call assembly.eval() to do this.  The residuals will be set in 
    202 assembly[i].residuals.  The theory and data are model specific, and can 
    203 be found in assembly[i].fitness.data.</p> 
    204 </dd></dl> 
    205  
    206 <dl class="method"> 
    207 <dt id="sans.fit.ParkFitting.MyAssembly.stderr"> 
    208 <tt class="descname">stderr</tt><big>(</big><em>pvec</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.stderr" title="Permalink to this definition">¶</a></dt> 
    209 <dd><p>Return parameter uncertainty.</p> 
    210 <p>This is just the sqrt diagonal of covariance matrix inv(J&#8217;J) at point p.</p> 
    211 </dd></dl> 
    212  
    213 <dl class="method"> 
    214 <dt id="sans.fit.ParkFitting.MyAssembly.weight"> 
    215 <tt class="descname">weight</tt><big>(</big><em>idx</em>, <em>value=None</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.MyAssembly.weight" title="Permalink to this definition">¶</a></dt> 
    216 <dd><p>Query the weight on a particular model.</p> 
    217 <p>Set weight to value if value is supplied.</p> 
    218 <table class="docutils field-list" frame="void" rules="none"> 
    219 <col class="field-name" /> 
    220 <col class="field-body" /> 
    221 <tbody valign="top"> 
    222 <tr class="field"><th class="field-name">Parameters :</th><td class="field-body"><dl class="first docutils"> 
    223 <dt>idx <span class="classifier-delimiter">:</span> <span class="classifier">integer</span></dt> 
    224 <dd><p class="first last">model number</p> 
    225 </dd> 
    226 <dt>value <span class="classifier-delimiter">:</span> <span class="classifier">float</span></dt> 
    227 <dd><p class="first last">model weight</p> 
    228 </dd> 
    229 </dl> 
    230 </td> 
    231 </tr> 
    232 <tr class="field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">model weight</p> 
    233 </td> 
    234 </tr> 
    235 </tbody> 
    236 </table> 
    237 </dd></dl> 
    238  
    239 </dd></dl> 
    240  
    241 <dl class="class"> 
    242 <dt id="sans.fit.ParkFitting.ParkFit"> 
    243 <em class="property">class </em><tt class="descclassname">sans.fit.ParkFitting.</tt><tt class="descname">ParkFit</tt><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit" title="Permalink to this definition">¶</a></dt> 
    244 <dd><p>Bases: <a class="reference internal" href="AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine" title="sans.fit.AbstractFitEngine.FitEngine"><tt class="xref py py-class docutils literal"><span class="pre">sans.fit.AbstractFitEngine.FitEngine</span></tt></a></p> 
    245 <p>ParkFit performs the Fit.This class can be used as follow: 
    246 #Do the fit Park 
    247 create an engine: engine = ParkFit() 
    248 Use data must be of type plottable 
    249 Use a sans model</p> 
    250 <p>Add data with a dictionnary of FitArrangeList where Uid is a key and data 
    251 is saved in FitArrange object. 
    252 engine.set_data(data,Uid)</p> 
    253 <p>Set model parameter &#8220;M1&#8221;= model.name add {model.parameter.name:value}.</p> 
    254 <table class="docutils field-list" frame="void" rules="none"> 
    255 <col class="field-name" /> 
    256 <col class="field-body" /> 
    257 <tbody valign="top"> 
    258 <tr class="field"><th class="field-name">Note :</th><td class="field-body">Set_param() if used must always preceded set_model() 
    259 for the fit to be performed.</td> 
    260 </tr> 
    261 </tbody> 
    262 </table> 
    263 <p>engine.set_param( model,&#8221;M1&#8221;, {&#8216;A&#8217;:2,&#8217;B&#8217;:4})</p> 
    264 <p>Add model with a dictionnary of FitArrangeList{} where Uid is a key 
    265 and model 
    266 is save in FitArrange object. 
    267 engine.set_model(model,Uid)</p> 
    268 <p>engine.fit return chisqr,[model.parameter 1,2,..],[[err1....][..err2...]] 
    269 chisqr1, out1, cov1=engine.fit({model.parameter.name:value},qmin,qmax)</p> 
    270 <table class="docutils field-list" frame="void" rules="none"> 
    271 <col class="field-name" /> 
    272 <col class="field-body" /> 
    273 <tbody valign="top"> 
    274 <tr class="field"><th class="field-name">Note :</th><td class="field-body">{model.parameter.name:value} is ignored in fit function since  
    275 the user should make sure to call set_param himself.</td> 
    276 </tr> 
    277 </tbody> 
    278 </table> 
    279 <dl class="method"> 
    280 <dt id="sans.fit.ParkFitting.ParkFit.create_assembly"> 
    281 <tt class="descname">create_assembly</tt><big>(</big><em>curr_thread</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.create_assembly" title="Permalink to this definition">¶</a></dt> 
    282 <dd><p>Extract sansmodel and sansdata from  
    283 self.FitArrangelist ={Uid:FitArrange} 
    284 Create parkmodel and park data ,form a list couple of parkmodel  
    285 and parkdata 
    286 create an assembly self.problem=  park.Assembly([(parkmodel,parkdata)])</p> 
    287 </dd></dl> 
    288  
    289 <dl class="method"> 
    290 <dt id="sans.fit.ParkFitting.ParkFit.fit"> 
    291 <tt class="descname">fit</tt><big>(</big><em>q=None</em>, <em>handler=None</em>, <em>curr_thread=None</em>, <em>ftol=1.49012e-008</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.fit" title="Permalink to this definition">¶</a></dt> 
    292 <dd><p>Performs fit with park.fit module.It can  perform fit with one model 
    293 and a set of data, more than two fit of  one model and sets of data or  
    294 fit with more than two model associated with their set of data and  
    295 constraints</p> 
    296 <table class="docutils field-list" frame="void" rules="none"> 
    297 <col class="field-name" /> 
    298 <col class="field-body" /> 
    299 <tbody valign="top"> 
    300 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> 
    301 <li><strong>pars</strong> &#8211; Dictionary of parameter names for the model and their  
    302 values.</li> 
    303 <li><strong>qmin</strong> &#8211; The minimum value of data&#8217;s range to be fit</li> 
    304 <li><strong>qmax</strong> &#8211; The maximum value of data&#8217;s range to be fit</li> 
    305 </ul> 
    306 </td> 
    307 </tr> 
    308 <tr class="field"><th class="field-name">Note :</th><td class="field-body"><p class="first">all parameter are ignored most of the time.Are just there  
    309 to keep ScipyFit and ParkFit interface the same.</p> 
    310 </td> 
    311 </tr> 
    312 <tr class="field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">result.fitness Value of the goodness of fit metric</p> 
    313 </td> 
    314 </tr> 
    315 <tr class="field"><th class="field-name">Returns:</th><td class="field-body"><p class="first">result.pvec list of parameter with the best value  
    316 found during fitting</p> 
    317 </td> 
    318 </tr> 
    319 <tr class="field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">result.cov Covariance matrix</p> 
    320 </td> 
    321 </tr> 
    322 </tbody> 
    323 </table> 
    324 </dd></dl> 
    325  
    326 <dl class="method"> 
    327 <dt id="sans.fit.ParkFitting.ParkFit.get_model"> 
    328 <tt class="descname">get_model</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.get_model" title="Permalink to this definition">¶</a></dt> 
    329 <dd><table class="docutils field-list" frame="void" rules="none"> 
    330 <col class="field-name" /> 
    331 <col class="field-body" /> 
    332 <tbody valign="top"> 
    333 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; id is key in the dictionary containing the model to return</td> 
    334 </tr> 
    335 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">a model at this id or None if no FitArrange element was  
    336 created with this id</td> 
    337 </tr> 
    338 </tbody> 
    339 </table> 
    340 </dd></dl> 
    341  
    342 <dl class="method"> 
    343 <dt id="sans.fit.ParkFitting.ParkFit.get_problem_to_fit"> 
    344 <tt class="descname">get_problem_to_fit</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.get_problem_to_fit" title="Permalink to this definition">¶</a></dt> 
    345 <dd><p>return the self.selected value of the fit problem of id</p> 
    346 <table class="docutils field-list" frame="void" rules="none"> 
    347 <col class="field-name" /> 
    348 <col class="field-body" /> 
    349 <tbody valign="top"> 
    350 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; the id of the problem</td> 
    351 </tr> 
    352 </tbody> 
    353 </table> 
    354 </dd></dl> 
    355  
    356 <dl class="method"> 
    357 <dt id="sans.fit.ParkFitting.ParkFit.remove_fit_problem"> 
    358 <tt class="descname">remove_fit_problem</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.remove_fit_problem" title="Permalink to this definition">¶</a></dt> 
    359 <dd><p>remove   fitarrange in id</p> 
    360 </dd></dl> 
    361  
    362 <dl class="method"> 
    363 <dt id="sans.fit.ParkFitting.ParkFit.select_problem_for_fit"> 
    364 <tt class="descname">select_problem_for_fit</tt><big>(</big><em>id</em>, <em>value</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.select_problem_for_fit" title="Permalink to this definition">¶</a></dt> 
    365 <dd><p>select a couple of model and data at the id position in dictionary 
    366 and set in self.selected value to value</p> 
    367 <table class="docutils field-list" frame="void" rules="none"> 
    368 <col class="field-name" /> 
    369 <col class="field-body" /> 
    370 <tbody valign="top"> 
    371 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>value</strong> &#8211; the value to allow fitting.  
    372 can only have the value one or zero</td> 
    373 </tr> 
    374 </tbody> 
    375 </table> 
    376 </dd></dl> 
    377  
    378 <dl class="method"> 
    379 <dt id="sans.fit.ParkFitting.ParkFit.set_data"> 
    380 <tt class="descname">set_data</tt><big>(</big><em>data</em>, <em>id</em>, <em>smearer=None</em>, <em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.set_data" title="Permalink to this definition">¶</a></dt> 
    381 <dd><p>Receives plottable, creates a list of data to fit,set data 
    382 in a FitArrange object and adds that object in a dictionary  
    383 with key id.</p> 
    384 <table class="docutils field-list" frame="void" rules="none"> 
    385 <col class="field-name" /> 
    386 <col class="field-body" /> 
    387 <tbody valign="top"> 
    388 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    389 <li><strong>data</strong> &#8211; data added</li> 
    390 <li><strong>id</strong> &#8211; unique key corresponding to a fitArrange object with data</li> 
    391 </ul> 
    392 </td> 
    393 </tr> 
    394 </tbody> 
    395 </table> 
    396 </dd></dl> 
    397  
    398 <dl class="method"> 
    399 <dt id="sans.fit.ParkFitting.ParkFit.set_model"> 
    400 <tt class="descname">set_model</tt><big>(</big><em>model</em>, <em>id</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span>, <em>constraints=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.ParkFitting.ParkFit.set_model" title="Permalink to this definition">¶</a></dt> 
    401 <dd><p>set a model on a given  in the fit engine.</p> 
    402 <table class="docutils field-list" frame="void" rules="none"> 
    403 <col class="field-name" /> 
    404 <col class="field-body" /> 
    405 <tbody valign="top"> 
    406 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>model</strong> &#8211; sans.models type</td> 
    407 </tr> 
    408 </tbody> 
    409 </table> 
    410 <dl class="docutils"> 
    411 <dt>:param <span class="classifier-delimiter">:</span> <span class="classifier">is the key of the fitArrange dictionary where model is </span></dt> 
    412 <dd>saved as a value</dd> 
    413 </dl> 
    414 <table class="docutils field-list" frame="void" rules="none"> 
    415 <col class="field-name" /> 
    416 <col class="field-body" /> 
    417 <tbody valign="top"> 
    418 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> 
    419 <li><strong>pars</strong> &#8211; the list of parameters to fit</li> 
    420 <li><strong>constraints</strong> &#8211; <p>list of  
    421 tuple (name of parameter, value of parameters) 
    422 the value of parameter must be a string to constraint 2 different 
    423 parameters. 
    424 Example:   
    425 we want to fit 2 model M1 and M2 both have parameters A and B. 
    426 constraints can be:</p> 
    427 <blockquote> 
    428 <div>constraints = [(M1.A, M2.B+2), (M1.B= M2.A <a href="#id1"><span class="problematic" id="id2">*</span></a>5),...,]</div></blockquote> 
    429 </li> 
    430 </ul> 
    431 </td> 
    432 </tr> 
    433 <tr class="field"><th class="field-name">Note :</th><td class="field-body"><p class="first last">pars must contains only name of existing model&#8217;s parameters</p> 
    434 </td> 
    435 </tr> 
    436 </tbody> 
    437 </table> 
    438 </dd></dl> 
    439  
    440 </dd></dl> 
    441  
     55<div class="section" id="mod-sans-fit-parkfitting"> 
     56<h2>:mod:` sans.fit.ParkFitting`<a class="headerlink" href="#mod-sans-fit-parkfitting" title="Permalink to this headline">¶</a></h2> 
    44257</div> 
    44358</div> 
    … …  
    45267  <ul> 
    45368<li><a class="reference internal" href="#">ParkFitting</a><ul> 
    454 <li><a class="reference internal" href="#module-sans.fit.ParkFitting">:mod:` sans.fit.ParkFitting`</a></li> 
     69<li><a class="reference internal" href="#mod-sans-fit-parkfitting">:mod:` sans.fit.ParkFitting`</a></li> 
    45570</ul> 
    45671</li> 
    … …  
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    494           <a href="../py-modindex.html" title="Python Module Index" 
    495              >modules</a> |</li> 
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    497109          <a href="ScipyFitting.html" title="ScipyFitting" 
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  • park_integration/docs/sphinx/_build/html/api/ScipyFitting.html

    r0c3003d r41517a6  
    3535             accesskey="I">index</a></li> 
    3636        <li class="right" > 
    37           <a href="../py-modindex.html" title="Python Module Index" 
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    … …  
    5249  <div class="section" id="scipyfitting"> 
    5350<h1>ScipyFitting<a class="headerlink" href="#scipyfitting" title="Permalink to this headline">¶</a></h1> 
    54 <div class="section" id="module-sans.fit.ScipyFitting"> 
    55 <span id="mod-sans-fit-scipyfitting"></span><h2>:mod:` sans.fit.ScipyFitting`<a class="headerlink" href="#module-sans.fit.ScipyFitting" title="Permalink to this headline">¶</a></h2> 
    56 <p>ScipyFitting module contains FitArrange , ScipyFit, 
    57 Parameter classes.All listed classes work together to perform a  
    58 simple fit with scipy optimizer.</p> 
    59 <dl class="class"> 
    60 <dt id="sans.fit.ScipyFitting.ScipyFit"> 
    61 <em class="property">class </em><tt class="descclassname">sans.fit.ScipyFitting.</tt><tt class="descname">ScipyFit</tt><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit" title="Permalink to this definition">¶</a></dt> 
    62 <dd><p>Bases: <a class="reference internal" href="AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine" title="sans.fit.AbstractFitEngine.FitEngine"><tt class="xref py py-class docutils literal"><span class="pre">sans.fit.AbstractFitEngine.FitEngine</span></tt></a></p> 
    63 <p>ScipyFit performs the Fit.This class can be used as follow: 
    64 #Do the fit SCIPY 
    65 create an engine: engine = ScipyFit() 
    66 Use data must be of type plottable 
    67 Use a sans model</p> 
    68 <p>Add data with a dictionnary of FitArrangeDict where Uid is a key and data 
    69 is saved in FitArrange object. 
    70 engine.set_data(data,Uid)</p> 
    71 <p>Set model parameter &#8220;M1&#8221;= model.name add {model.parameter.name:value}.</p> 
    72 <table class="docutils field-list" frame="void" rules="none"> 
    73 <col class="field-name" /> 
    74 <col class="field-body" /> 
    75 <tbody valign="top"> 
    76 <tr class="field"><th class="field-name">Note :</th><td class="field-body">Set_param() if used must always preceded set_model() 
    77 for the fit to be performed.In case of Scipyfit set_param is called in 
    78 fit () automatically.</td> 
    79 </tr> 
    80 </tbody> 
    81 </table> 
    82 <p>engine.set_param( model,&#8221;M1&#8221;, {&#8216;A&#8217;:2,&#8217;B&#8217;:4})</p> 
    83 <p>Add model with a dictionnary of FitArrangeDict{} where Uid is a key and model 
    84 is save in FitArrange object. 
    85 engine.set_model(model,Uid)</p> 
    86 <p>engine.fit return chisqr,[model.parameter 1,2,..],[[err1....][..err2...]] 
    87 chisqr1, out1, cov1=engine.fit({model.parameter.name:value},qmin,qmax)</p> 
    88 <dl class="method"> 
    89 <dt id="sans.fit.ScipyFitting.ScipyFit.fit"> 
    90 <tt class="descname">fit</tt><big>(</big><em>q=None</em>, <em>handler=None</em>, <em>curr_thread=None</em>, <em>ftol=1.49012e-008</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.fit" title="Permalink to this definition">¶</a></dt> 
    91 <dd></dd></dl> 
    92  
    93 <dl class="method"> 
    94 <dt id="sans.fit.ScipyFitting.ScipyFit.get_model"> 
    95 <tt class="descname">get_model</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.get_model" title="Permalink to this definition">¶</a></dt> 
    96 <dd><table class="docutils field-list" frame="void" rules="none"> 
    97 <col class="field-name" /> 
    98 <col class="field-body" /> 
    99 <tbody valign="top"> 
    100 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; id is key in the dictionary containing the model to return</td> 
    101 </tr> 
    102 <tr class="field"><th class="field-name">Returns:</th><td class="field-body">a model at this id or None if no FitArrange element was  
    103 created with this id</td> 
    104 </tr> 
    105 </tbody> 
    106 </table> 
    107 </dd></dl> 
    108  
    109 <dl class="method"> 
    110 <dt id="sans.fit.ScipyFitting.ScipyFit.get_problem_to_fit"> 
    111 <tt class="descname">get_problem_to_fit</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.get_problem_to_fit" title="Permalink to this definition">¶</a></dt> 
    112 <dd><p>return the self.selected value of the fit problem of id</p> 
    113 <table class="docutils field-list" frame="void" rules="none"> 
    114 <col class="field-name" /> 
    115 <col class="field-body" /> 
    116 <tbody valign="top"> 
    117 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>id</strong> &#8211; the id of the problem</td> 
    118 </tr> 
    119 </tbody> 
    120 </table> 
    121 </dd></dl> 
    122  
    123 <dl class="method"> 
    124 <dt id="sans.fit.ScipyFitting.ScipyFit.remove_fit_problem"> 
    125 <tt class="descname">remove_fit_problem</tt><big>(</big><em>id</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.remove_fit_problem" title="Permalink to this definition">¶</a></dt> 
    126 <dd><p>remove   fitarrange in id</p> 
    127 </dd></dl> 
    128  
    129 <dl class="method"> 
    130 <dt id="sans.fit.ScipyFitting.ScipyFit.select_problem_for_fit"> 
    131 <tt class="descname">select_problem_for_fit</tt><big>(</big><em>id</em>, <em>value</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.select_problem_for_fit" title="Permalink to this definition">¶</a></dt> 
    132 <dd><p>select a couple of model and data at the id position in dictionary 
    133 and set in self.selected value to value</p> 
    134 <table class="docutils field-list" frame="void" rules="none"> 
    135 <col class="field-name" /> 
    136 <col class="field-body" /> 
    137 <tbody valign="top"> 
    138 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>value</strong> &#8211; the value to allow fitting.  
    139 can only have the value one or zero</td> 
    140 </tr> 
    141 </tbody> 
    142 </table> 
    143 </dd></dl> 
    144  
    145 <dl class="method"> 
    146 <dt id="sans.fit.ScipyFitting.ScipyFit.set_data"> 
    147 <tt class="descname">set_data</tt><big>(</big><em>data</em>, <em>id</em>, <em>smearer=None</em>, <em>qmin=None</em>, <em>qmax=None</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.set_data" title="Permalink to this definition">¶</a></dt> 
    148 <dd><p>Receives plottable, creates a list of data to fit,set data 
    149 in a FitArrange object and adds that object in a dictionary  
    150 with key id.</p> 
    151 <table class="docutils field-list" frame="void" rules="none"> 
    152 <col class="field-name" /> 
    153 <col class="field-body" /> 
    154 <tbody valign="top"> 
    155 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> 
    156 <li><strong>data</strong> &#8211; data added</li> 
    157 <li><strong>id</strong> &#8211; unique key corresponding to a fitArrange object with data</li> 
    158 </ul> 
    159 </td> 
    160 </tr> 
    161 </tbody> 
    162 </table> 
    163 </dd></dl> 
    164  
    165 <dl class="method"> 
    166 <dt id="sans.fit.ScipyFitting.ScipyFit.set_model"> 
    167 <tt class="descname">set_model</tt><big>(</big><em>model</em>, <em>id</em>, <em>pars=</em><span class="optional">[</span><span class="optional">]</span>, <em>constraints=</em><span class="optional">[</span><span class="optional">]</span><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.ScipyFit.set_model" title="Permalink to this definition">¶</a></dt> 
    168 <dd><p>set a model on a given  in the fit engine.</p> 
    169 <table class="docutils field-list" frame="void" rules="none"> 
    170 <col class="field-name" /> 
    171 <col class="field-body" /> 
    172 <tbody valign="top"> 
    173 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><strong>model</strong> &#8211; sans.models type</td> 
    174 </tr> 
    175 </tbody> 
    176 </table> 
    177 <dl class="docutils"> 
    178 <dt>:param <span class="classifier-delimiter">:</span> <span class="classifier">is the key of the fitArrange dictionary where model is </span></dt> 
    179 <dd>saved as a value</dd> 
    180 </dl> 
    181 <table class="docutils field-list" frame="void" rules="none"> 
    182 <col class="field-name" /> 
    183 <col class="field-body" /> 
    184 <tbody valign="top"> 
    185 <tr class="field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> 
    186 <li><strong>pars</strong> &#8211; the list of parameters to fit</li> 
    187 <li><strong>constraints</strong> &#8211; <p>list of  
    188 tuple (name of parameter, value of parameters) 
    189 the value of parameter must be a string to constraint 2 different 
    190 parameters. 
    191 Example:   
    192 we want to fit 2 model M1 and M2 both have parameters A and B. 
    193 constraints can be:</p> 
    194 <blockquote> 
    195 <div>constraints = [(M1.A, M2.B+2), (M1.B= M2.A <a href="#id1"><span class="problematic" id="id2">*</span></a>5),...,]</div></blockquote> 
    196 </li> 
    197 </ul> 
    198 </td> 
    199 </tr> 
    200 <tr class="field"><th class="field-name">Note :</th><td class="field-body"><p class="first last">pars must contains only name of existing model&#8217;s parameters</p> 
    201 </td> 
    202 </tr> 
    203 </tbody> 
    204 </table> 
    205 </dd></dl> 
    206  
    207 </dd></dl> 
    208  
    209 <dl class="class"> 
    210 <dt id="sans.fit.ScipyFitting.fitresult"> 
    211 <em class="property">class </em><tt class="descclassname">sans.fit.ScipyFitting.</tt><tt class="descname">fitresult</tt><big>(</big><em>model=None</em>, <em>param_list=None</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.fitresult" title="Permalink to this definition">¶</a></dt> 
    212 <dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">object</span></tt></p> 
    213 <p>Storing fit result</p> 
    214 <dl class="method"> 
    215 <dt id="sans.fit.ScipyFitting.fitresult.print_summary"> 
    216 <tt class="descname">print_summary</tt><big>(</big><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.fitresult.print_summary" title="Permalink to this definition">¶</a></dt> 
    217 <dd></dd></dl> 
    218  
    219 <dl class="method"> 
    220 <dt id="sans.fit.ScipyFitting.fitresult.set_fitness"> 
    221 <tt class="descname">set_fitness</tt><big>(</big><em>fitness</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.fitresult.set_fitness" title="Permalink to this definition">¶</a></dt> 
    222 <dd></dd></dl> 
    223  
    224 <dl class="method"> 
    225 <dt id="sans.fit.ScipyFitting.fitresult.set_model"> 
    226 <tt class="descname">set_model</tt><big>(</big><em>model</em><big>)</big><a class="headerlink" href="#sans.fit.ScipyFitting.fitresult.set_model" title="Permalink to this definition">¶</a></dt> 
    227 <dd></dd></dl> 
    228  
    229 </dd></dl> 
    230  
     51<div class="section" id="mod-sans-fit-scipyfitting"> 
     52<h2>:mod:` sans.fit.ScipyFitting`<a class="headerlink" href="#mod-sans-fit-scipyfitting" title="Permalink to this headline">¶</a></h2> 
    23153</div> 
    23254</div> 
    … …  
    24163  <ul> 
    24264<li><a class="reference internal" href="#">ScipyFitting</a><ul> 
    243 <li><a class="reference internal" href="#module-sans.fit.ScipyFitting">:mod:` sans.fit.ScipyFitting`</a></li> 
     65<li><a class="reference internal" href="#mod-sans-fit-scipyfitting">:mod:` sans.fit.ScipyFitting`</a></li> 
    24466</ul> 
    24567</li> 
    … …  
    278100             >index</a></li> 
    279101        <li class="right" > 
    280           <a href="../py-modindex.html" title="Python Module Index" 
    281              >modules</a> |</li> 
    282         <li class="right" > 
    283102          <a href="ParkFitting.html" title="ParkFitting" 
    284103             >previous</a> |</li> 

  • park_integration/docs/sphinx/_build/html/api/index.html

    r0c3003d r41517a6  
    3535             accesskey="I">index</a></li> 
    3636        <li class="right" > 
    37           <a href="../py-modindex.html" title="Python Module Index" 
    38              >modules</a> |</li> 
    39         <li class="right" > 
    4037          <a href="AbstractFitEngine.html" title="AbstractFitEngine" 
    4138             accesskey="N">next</a> |</li> 
    … …  
    6057<tr class="field"><th class="field-name">Release:</th><td class="field-body">0.1</td> 
    6158</tr> 
    62 <tr class="field"><th class="field-name">Date:</th><td class="field-body">August 08, 2011</td> 
     59<tr class="field"><th class="field-name">Date:</th><td class="field-body">August 09, 2011</td> 
    6360</tr> 
    6461</tbody> 
    … …  
    6764<ul> 
    6865<li class="toctree-l1"><a class="reference internal" href="AbstractFitEngine.html">AbstractFitEngine</a><ul> 
    69 <li class="toctree-l2"><a class="reference internal" href="AbstractFitEngine.html#module-sans.fit.AbstractFitEngine">:mod:` sans.fit.AbstractFitEngine`</a></li> 
     66<li class="toctree-l2"><a class="reference internal" href="AbstractFitEngine.html#mod-sans-fit-abstractfitengine">:mod:` sans.fit.AbstractFitEngine`</a></li> 
    7067</ul> 
    7168</li> 
    7269<li class="toctree-l1"><a class="reference internal" href="Fitting.html">Fitting</a><ul> 
    73 <li class="toctree-l2"><a class="reference internal" href="Fitting.html#module-sans.fit.Fitting">:mod:` sans.fit.Fitting`</a></li> 
     70<li class="toctree-l2"><a class="reference internal" href="Fitting.html#mod-sans-fit-fitting">:mod:` sans.fit.Fitting`</a></li> 
    7471</ul> 
    7572</li> 
    7673<li class="toctree-l1"><a class="reference internal" href="ParkFitting.html">ParkFitting</a><ul> 
    77 <li class="toctree-l2"><a class="reference internal" href="ParkFitting.html#module-sans.fit.ParkFitting">:mod:` sans.fit.ParkFitting`</a></li> 
     74<li class="toctree-l2"><a class="reference internal" href="ParkFitting.html#mod-sans-fit-parkfitting">:mod:` sans.fit.ParkFitting`</a></li> 
    7875</ul> 
    7976</li> 
    8077<li class="toctree-l1"><a class="reference internal" href="ScipyFitting.html">ScipyFitting</a><ul> 
    81 <li class="toctree-l2"><a class="reference internal" href="ScipyFitting.html#module-sans.fit.ScipyFitting">:mod:` sans.fit.ScipyFitting`</a></li> 
     78<li class="toctree-l2"><a class="reference internal" href="ScipyFitting.html#mod-sans-fit-scipyfitting">:mod:` sans.fit.ScipyFitting`</a></li> 
    8279</ul> 
    8380</li> 
    … …  
    127124             >index</a></li> 
    128125        <li class="right" > 
    129           <a href="../py-modindex.html" title="Python Module Index" 
    130              >modules</a> |</li> 
    131         <li class="right" > 
    132126          <a href="AbstractFitEngine.html" title="AbstractFitEngine" 
    133127             >next</a> |</li> 

  • park_integration/docs/sphinx/_build/html/genindex.html

    r0c3003d r41517a6  
    3232          <a href="#" title="General Index" 
    3333             accesskey="I">index</a></li> 
    34         <li class="right" > 
    35           <a href="py-modindex.html" title="Python Module Index" 
    36              >modules</a> |</li> 
    3734        <li><a href="index.html">park_integration v0.1.0 documentation</a> &raquo;</li>  
    3835      </ul> 
    … …  
    4845 
    4946   <div class="genindex-jumpbox"> 
    50    <a href="#A"><strong>A</strong></a> | <a href="#C"><strong>C</strong></a> | <a href="#E"><strong>E</strong></a> | <a href="#F"><strong>F</strong></a> | <a href="#G"><strong>G</strong></a> | <a href="#I"><strong>I</strong></a> | <a href="#J"><strong>J</strong></a> | <a href="#M"><strong>M</strong></a> | <a href="#N"><strong>N</strong></a> | <a href="#P"><strong>P</strong></a> | <a href="#R"><strong>R</strong></a> | <a href="#S"><strong>S</strong></a> | <a href="#V"><strong>V</strong></a> | <a href="#W"><strong>W</strong></a> | <a href="#X"><strong>X</strong></a> | <a href="#Y"><strong>Y</strong></a> | <a href="#Z"><strong>Z</strong></a>  
     47    
    5148   </div> 
    52 <h2 id="A">A</h2> 
    53 <table style="width: 100%" class="indextable genindextable"><tr> 
    54   <td style="width: 33%" valign="top"><dl> 
    55     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.abort">abort() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    56     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.add_data">add_data() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    57     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.add_notes">add_notes() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    58     <dd><dl> 
    59       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.add_notes">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    60   </dl></dd> 
    61     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.all_results">all_results() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    62 </dl></td> 
    63   <td style="width: 33%" valign="top"><dl> 
    64     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.append">append() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    65     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.append_empty_process">append_empty_process() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    66     <dd><dl> 
    67       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.append_empty_process">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    68   </dl></dd> 
    69     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitAbort.args">args (sans.fit.AbstractFitEngine.FitAbort attribute)</a></dt> 
    70 </dl></td> 
    71 </tr></table> 
    72  
    73 <h2 id="C">C</h2> 
    74 <table style="width: 100%" class="indextable genindextable"><tr> 
    75   <td style="width: 33%" valign="top"><dl> 
    76     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansAssembly.check_param_range">check_param_range() (sans.fit.AbstractFitEngine.SansAssembly method)</a></dt> 
    77     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansAssembly.chisq">chisq() (sans.fit.AbstractFitEngine.SansAssembly method)</a></dt> 
    78     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.clone_without_data">clone_without_data() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    79     <dd><dl> 
    80       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.clone_without_data">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    81   </dl></dd> 
    82 </dl></td> 
    83   <td style="width: 33%" valign="top"><dl> 
    84     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.cov">cov() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    85     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.create_assembly">create_assembly() (sans.fit.ParkFitting.ParkFit method)</a></dt> 
    86 </dl></td> 
    87 </tr></table> 
    88  
    89 <h2 id="E">E</h2> 
    90 <table style="width: 100%" class="indextable genindextable"><tr> 
    91   <td style="width: 33%" valign="top"><dl> 
    92     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.Model.eval">eval() (sans.fit.AbstractFitEngine.Model method)</a></dt> 
    93     <dd><dl> 
    94       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.eval">(sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    95   </dl></dd> 
    96 </dl></td> 
    97   <td style="width: 33%" valign="top"><dl> 
    98     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.Model.eval_derivs">eval_derivs() (sans.fit.AbstractFitEngine.Model method)</a></dt> 
    99 </dl></td> 
    100 </tr></table> 
    101  
    102 <h2 id="F">F</h2> 
    103 <table style="width: 100%" class="indextable genindextable"><tr> 
    104   <td style="width: 33%" valign="top"><dl> 
    105     <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit">Fit (class in sans.fit.Fitting)</a></dt> 
    106     <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.fit">fit() (sans.fit.Fitting.Fit method)</a></dt> 
    107     <dd><dl> 
    108       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.fit">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    109       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.fit">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    110   </dl></dd> 
    111     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.fit_parameters">fit_parameters() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    112     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitAbort">FitAbort</a></dt> 
    113     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange">FitArrange (class in sans.fit.AbstractFitEngine)</a></dt> 
    114 </dl></td> 
    115   <td style="width: 33%" valign="top"><dl> 
    116     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D">FitData1D (class in sans.fit.AbstractFitEngine)</a></dt> 
    117     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D">FitData2D (class in sans.fit.AbstractFitEngine)</a></dt> 
    118     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine">FitEngine (class in sans.fit.AbstractFitEngine)</a></dt> 
    119     <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.fitresult">fitresult (class in sans.fit.ScipyFitting)</a></dt> 
    120     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.fresiduals">fresiduals() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    121 </dl></td> 
    122 </tr></table> 
    123  
    124 <h2 id="G">G</h2> 
    125 <table style="width: 100%" class="indextable genindextable"><tr> 
    126   <td style="width: 33%" valign="top"><dl> 
    127     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.get">get() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    128     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.get_data">get_data() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    129     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.get_fit_range">get_fit_range() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    130     <dd><dl> 
    131       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.get_fit_range">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    132   </dl></dd> 
    133     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.get_model">get_model() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    134     <dd><dl> 
    135       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine.get_model">(sans.fit.AbstractFitEngine.FitEngine method)</a></dt> 
    136       <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.get_model">(sans.fit.Fitting.Fit method)</a></dt> 
    137       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.get_model">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    138       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.get_model">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    139   </dl></dd> 
    140 </dl></td> 
    141   <td style="width: 33%" valign="top"><dl> 
    142     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.get_name">get_name() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    143     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.Model.get_params">get_params() (sans.fit.AbstractFitEngine.Model method)</a></dt> 
    144     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine.get_problem_to_fit">get_problem_to_fit() (sans.fit.AbstractFitEngine.FitEngine method)</a></dt> 
    145     <dd><dl> 
    146       <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.get_problem_to_fit">(sans.fit.Fitting.Fit method)</a></dt> 
    147       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.get_problem_to_fit">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    148       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.get_problem_to_fit">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    149   </dl></dd> 
    150     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.get_to_fit">get_to_fit() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    151 </dl></td> 
    152 </tr></table> 
    153  
    154 <h2 id="I">I</h2> 
    155 <table style="width: 100%" class="indextable genindextable"><tr> 
    156   <td style="width: 33%" valign="top"><dl> 
    157     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.insert">insert() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    158     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.is_slit_smeared">is_slit_smeared() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    159     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.iscomputed">iscomputed() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    160     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.isfeasible">isfeasible() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    161     <dd><dl> 
    162       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.isfeasible">(sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    163   </dl></dd> 
    164 </dl></td> 
    165   <td style="width: 33%" valign="top"><dl> 
    166     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.isfitted">isfitted() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    167     <dd><dl> 
    168       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.isfitted">(sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    169   </dl></dd> 
    170     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.isfixed">isfixed() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    171     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.isrestrained">isrestrained() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    172 </dl></td> 
    173 </tr></table> 
    174  
    175 <h2 id="J">J</h2> 
    176 <table style="width: 100%" class="indextable genindextable"><tr> 
    177   <td style="width: 33%" valign="top"><dl> 
    178     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.jacobian">jacobian() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    179 </dl></td> 
    180 </tr></table> 
    181  
    182 <h2 id="M">M</h2> 
    183 <table style="width: 100%" class="indextable genindextable"><tr> 
    184   <td style="width: 33%" valign="top"><dl> 
    185     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitAbort.message">message (sans.fit.AbstractFitEngine.FitAbort attribute)</a></dt> 
    186     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.Model">Model (class in sans.fit.AbstractFitEngine)</a></dt> 
    187 </dl></td> 
    188   <td style="width: 33%" valign="top"><dl> 
    189     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly">MyAssembly (class in sans.fit.ParkFitting)</a></dt> 
    190 </dl></td> 
    191 </tr></table> 
    192  
    193 <h2 id="N">N</h2> 
    194 <table style="width: 100%" class="indextable genindextable"><tr> 
    195   <td style="width: 33%" valign="top"><dl> 
    196     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.name">name (sans.fit.AbstractFitEngine.SansParameter attribute)</a></dt> 
    197 </dl></td> 
    198 </tr></table> 
    199  
    200 <h2 id="P">P</h2> 
    201 <table style="width: 100%" class="indextable genindextable"><tr> 
    202   <td style="width: 33%" valign="top"><dl> 
    203     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit">ParkFit (class in sans.fit.ParkFitting)</a></dt> 
    204 </dl></td> 
    205   <td style="width: 33%" valign="top"><dl> 
    206     <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.fitresult.print_summary">print_summary() (sans.fit.ScipyFitting.fitresult method)</a></dt> 
    207 </dl></td> 
    208 </tr></table> 
    209  
    210 <h2 id="R">R</h2> 
    211 <table style="width: 100%" class="indextable genindextable"><tr> 
    212   <td style="width: 33%" valign="top"><dl> 
    213     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.range">range (sans.fit.AbstractFitEngine.SansParameter attribute)</a></dt> 
    214     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.remove_data">remove_data() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    215     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine.remove_fit_problem">remove_fit_problem() (sans.fit.AbstractFitEngine.FitEngine method)</a></dt> 
    216     <dd><dl> 
    217       <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.remove_fit_problem">(sans.fit.Fitting.Fit method)</a></dt> 
    218       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.remove_fit_problem">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    219       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.remove_fit_problem">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    220   </dl></dd> 
    221 </dl></td> 
    222   <td style="width: 33%" valign="top"><dl> 
    223     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.residuals">residuals() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    224     <dd><dl> 
    225       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.residuals">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    226   </dl></dd> 
    227     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.residuals_deriv">residuals_deriv() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    228     <dd><dl> 
    229       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.residuals_deriv">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    230   </dl></dd> 
    231     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.result">result() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    232 </dl></td> 
    233 </tr></table> 
    234  
    235 <h2 id="S">S</h2> 
    236 <table style="width: 100%" class="indextable genindextable"><tr> 
    237   <td style="width: 33%" valign="top"><dl> 
    238     <dt><a href="api/AbstractFitEngine.html#module-sans.fit.AbstractFitEngine">sans.fit.AbstractFitEngine (module)</a></dt> 
    239     <dt><a href="api/Fitting.html#module-sans.fit.Fitting">sans.fit.Fitting (module)</a></dt> 
    240     <dt><a href="api/ParkFitting.html#module-sans.fit.ParkFitting">sans.fit.ParkFitting (module)</a></dt> 
    241     <dt><a href="api/ScipyFitting.html#module-sans.fit.ScipyFitting">sans.fit.ScipyFitting (module)</a></dt> 
    242     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansAssembly">SansAssembly (class in sans.fit.AbstractFitEngine)</a></dt> 
    243     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter">SansParameter (class in sans.fit.AbstractFitEngine)</a></dt> 
    244     <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit">ScipyFit (class in sans.fit.ScipyFitting)</a></dt> 
    245     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine.select_problem_for_fit">select_problem_for_fit() (sans.fit.AbstractFitEngine.FitEngine method)</a></dt> 
    246     <dd><dl> 
    247       <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.select_problem_for_fit">(sans.fit.Fitting.Fit method)</a></dt> 
    248       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.select_problem_for_fit">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    249       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.select_problem_for_fit">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    250   </dl></dd> 
    251     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.Model.set">set() (sans.fit.AbstractFitEngine.Model method)</a></dt> 
    252     <dd><dl> 
    253       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.set">(sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    254   </dl></dd> 
    255     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.set_data">set_data() (sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    256     <dd><dl> 
    257       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine.set_data">(sans.fit.AbstractFitEngine.FitEngine method)</a></dt> 
    258       <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.set_data">(sans.fit.Fitting.Fit method)</a></dt> 
    259       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.set_data">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    260       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.set_data">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    261   </dl></dd> 
    262     <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.set_engine">set_engine() (sans.fit.Fitting.Fit method)</a></dt> 
    263 </dl></td> 
    264   <td style="width: 33%" valign="top"><dl> 
    265     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.set_fit_range">set_fit_range() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    266     <dd><dl> 
    267       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.set_fit_range">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    268   </dl></dd> 
    269     <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.fitresult.set_fitness">set_fitness() (sans.fit.ScipyFitting.fitresult method)</a></dt> 
    270     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.set_model">set_model() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    271     <dd><dl> 
    272       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitEngine.set_model">(sans.fit.AbstractFitEngine.FitEngine method)</a></dt> 
    273       <dt><a href="api/Fitting.html#sans.fit.Fitting.Fit.set_model">(sans.fit.Fitting.Fit method)</a></dt> 
    274       <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.ParkFit.set_model">(sans.fit.ParkFitting.ParkFit method)</a></dt> 
    275       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.ScipyFit.set_model">(sans.fit.ScipyFitting.ScipyFit method)</a></dt> 
    276       <dt><a href="api/ScipyFitting.html#sans.fit.ScipyFitting.fitresult.set_model">(sans.fit.ScipyFitting.fitresult method)</a></dt> 
    277   </dl></dd> 
    278     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.Model.set_params">set_params() (sans.fit.AbstractFitEngine.Model method)</a></dt> 
    279     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.set_result">set_result() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    280     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.set_smearer">set_smearer() (sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    281     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitArrange.set_to_fit">set_to_fit() (sans.fit.AbstractFitEngine.FitArrange method)</a></dt> 
    282     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.setprefix">setprefix() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    283     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.stderr">stderr() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    284     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.summarize">summarize() (sans.fit.AbstractFitEngine.SansParameter method)</a></dt> 
    285 </dl></td> 
    286 </tr></table> 
    287  
    288 <h2 id="V">V</h2> 
    289 <table style="width: 100%" class="indextable genindextable"><tr> 
    290   <td style="width: 33%" valign="top"><dl> 
    291     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.SansParameter.value">value (sans.fit.AbstractFitEngine.SansParameter attribute)</a></dt> 
    292 </dl></td> 
    293 </tr></table> 
    294  
    295 <h2 id="W">W</h2> 
    296 <table style="width: 100%" class="indextable genindextable"><tr> 
    297   <td style="width: 33%" valign="top"><dl> 
    298     <dt><a href="api/ParkFitting.html#sans.fit.ParkFitting.MyAssembly.weight">weight() (sans.fit.ParkFitting.MyAssembly method)</a></dt> 
    299 </dl></td> 
    300 </tr></table> 
    301  
    302 <h2 id="X">X</h2> 
    303 <table style="width: 100%" class="indextable genindextable"><tr> 
    304   <td style="width: 33%" valign="top"><dl> 
    305     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.xaxis">xaxis() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    306     <dd><dl> 
    307       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.xaxis">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    308   </dl></dd> 
    309 </dl></td> 
    310 </tr></table> 
    311  
    312 <h2 id="Y">Y</h2> 
    313 <table style="width: 100%" class="indextable genindextable"><tr> 
    314   <td style="width: 33%" valign="top"><dl> 
    315     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData1D.yaxis">yaxis() (sans.fit.AbstractFitEngine.FitData1D method)</a></dt> 
    316     <dd><dl> 
    317       <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.yaxis">(sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    318   </dl></dd> 
    319 </dl></td> 
    320 </tr></table> 
    321  
    322 <h2 id="Z">Z</h2> 
    323 <table style="width: 100%" class="indextable genindextable"><tr> 
    324   <td style="width: 33%" valign="top"><dl> 
    325     <dt><a href="api/AbstractFitEngine.html#sans.fit.AbstractFitEngine.FitData2D.zaxis">zaxis() (sans.fit.AbstractFitEngine.FitData2D method)</a></dt> 
    326 </dl></td> 
    327 </tr></table> 
    328  
    32949 
    33050 
    … …  
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    42              >modules</a> |</li> 
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    93              >modules</a> |</li> 
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  • park_integration/docs/sphinx/conf.py

    raa36f96 r41517a6  
    1717# add these directories to sys.path here. If the directory is relative to the 
    1818# documentation root, use os.path.abspath to make it absolute, like shown here. 
    19 sys.path.append(os.path.abspath(os.path.dirname('../../park_integration'))) 
     19sys.path.append(os.path.abspath(os.path.join('..', '..', 'src'))) 
     20#sys.path.append(os.path.abspath(os.path.dirname('../../park_integration'))) 
    2021sys.path.append(os.path.abspath('_extensions')) 
    2122 

  • park_integration/src/sans/fit/AbstractFitEngine.py

    r4154f3e r41517a6  
    66import math 
    77import park 
    8 from DataLoader.data_info import Data1D 
    9 from DataLoader.data_info import Data2D 
     8from sans.dataloader.data_info import Data1D 
     9from sans.dataloader.data_info import Data2D 
    1010import time 
    1111_SMALLVALUE = 1.0e-10     
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