Changes in sasview/README.txt [9a182b2:243fbc0] in sasview


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  • sasview/README.txt

    r9a182b2 r243fbc0  
    441- Features 
    55=========== 
    6     - New in Version 4.0 
    7       ------------------ 
    8       This release fixes the various bugs found during the alpha and beta testing 
    9       - Improvements 
    10         - Support for reading data files from Anton Paar Saxess instruments 
    11         - Adds documentation on how to write custom models in the new framework 
    12       - Bug Fixes 
    13         - Fixes bug #604 Pringle model questions 
    14         - Fixes bug #472 Reparameterize Teubner-Strey 
    15         - Fixes bug #530 Numerical instabilities in Teubner Strey model 
    16         - Fixes bug #658 ASCII reader very broken 
    17  
    18  
    19     - New in Version 4.0 beta 1 
    20       -------------------- 
    21       This beta adds support for the magnetic and multilevel models of 3.1.2 
    22       and along with a host of bug fixes found in the alpha. 
    23  
    24       - Model package changes and improvements 
    25          - All 3.1.2 models now available in new interface 
    26          - Old custom models should now still work 
    27             - '''NOTE:''' These will be deprecated in a future version. Old 
    28             custom models should be converted to the new model format which 
    29             is now the same as the built in models and offers much better 
    30             support. 
    31          - Custom model editor now creates new style models 
    32          - Custom model editor supports better error checking 
    33       - Documentation improvements 
    34         - Continued general cleanup 
    35       - Other improvements/additions 
    36          - Support for new canSAS 2D data files added 
    37          - Plot axes range can now be set manually as well as by zooming 
    38          - Plot annotations can now be moved around after being placed on plot. 
    39          - The active optimizer is now listed on the top of the fit panel. 
    40          - Linear fits now update qmin and max when the x scale limits are 
    41          changed.  Also the plot range no longer resets after a fit. 
    42       - Bug fixes 
    43          - Fixes bug #511 Errors in linearized fits and clean up of interface 
    44          including Kratky representation 
    45          - Fixes bug #186 Data operation Tool now executes when something is 
    46          entered in the text box and does not wait for the user to hit enter 
    47          - Fixes bug #459 plot context menu bug 
    48          - Fixes bug #559 copy to clipboard in graph menu broken 
    49          - Fixes bug #466 cannot remove a linear fit from graph 
    50          - Numerous bugs introduced in the alpha 
    51  
    52  
    536 
    547    - New in Version 4.0.0-alpha 
     
    9144   - New in Version 3.1.2 
    9245     -------------------- 
    93      This release is a major stability improvement, having fixed a serious bug 
     46     This release is a major stability improvement, having fixed a serious bug  
    9447     that came to light since release 3.1.1. All users should upgrade. 
    9548 
    96      - Fixes bug #468 broken remove constraint buttons in 
     49     - Fixes bug #468 broken remove constraint buttons in  
    9750       simultaneous/constrained fitting panel 
    98      - Fixes bug #474 resulting from changes in 3.1.1 that had 
     51     - Fixes bug #474 resulting from changes in 3.1.1 that had  
    9952       introduced an error in the high-Q of slit-smeared models. 
    100      - Fixes bug #478 which would cause wx to run out of IDs and result 
     53     - Fixes bug #478 which would cause wx to run out of IDs and result  
    10154       in SasView crashing even if left alone. 
    10255     - Fixes bug #479 missing help button on simultaneous/constrained fit page 
     
    12275         documentation. 
    12376       - The model help has been split so that the Details button now brings up 
    124          a very short pop-up giving the equation being used while HELP goes to 
     77         a very short pop-up giving the equation being used while HELP goes to  
    12578         the section in the full documentation describing the model. 
    126        - Extensive help has also been added for the new optimizer engine (see 
     79       - Extensive help has also been added for the new optimizer engine (see  
    12780         below) including rules of thumb on how and when to choose a given 
    12881         optimizer and what the parameters do. 
     
    13992         - A Nelder-Mead Simplex optimizer 
    14093         - A Differential Evolution optimizer 
    141          - A Monte Carlo optimizer (DREAM) 
     94         - A Monte Carlo optimizer (DREAM)  
    14295     - New models were added: 
    14396         - MicelleSphCoreModel (currently residing in the Uncategorized category) 
     
    148101         - RectangularHollowPrismInfThinWallsModel 
    149102     - Infrastructure to allow SESANS data to be fit with models was added. This 
    150        will become available in a future release but can currently be used from 
     103       will become available in a future release but can currently be used from  
    151104       the command line with some caveats. 
    152105     - A number of bugs were fixed including a thread crashing issue and an 
     
    173126       floating. 
    174127     - Five new models have been added: PringlesModel, CoreShellEllipsoidXTModel, 
    175        RectangularPrismModel, RectangularHollowPrismModel and 
     128       RectangularPrismModel, RectangularHollowPrismModel and  
    176129       RectangularHollowPrismInfThinWallsModel. 
    177      - The data loader now supports ILL DAT data files and reads the full meta 
     130     - The data loader now supports ILL DAT data files and reads the full meta  
    178131       information from canSAS file formats. 
    179132     - Redefined convention for specifying angular parameters for anisotropic 
    180133       models. 
    181      - A number of minor features have been added such as permitting a log 
    182        distribution of points when using a model to simulate data, and the 
     134     - A number of minor features have been added such as permitting a log  
     135       distribution of points when using a model to simulate data, and the  
    183136       addition of a Kratky plot option to the linear plots. 
    184137     - A number of bugs have also been fixed. 
    185138     - Save Project and Save Analysis now work more reliably. 
    186      - BETA: Magnetic contrast supporting full polarization analysis has been 
     139     - BETA: Magnetic contrast supporting full polarization analysis has been  
    187140       implemented for some spherical and cylindrical models. 
    188141     - BETA: Two new tools have been added: 
    189        - A generic scattering calculator which takes an atomic, magnetic or 
    190          SLD distribution in space and generates the appropriate 2D 
    191          scattering pattern. In some cases the orientationally averaged 
    192          (powder) 1D scattering can also be computed. Supported formats 
    193          include: SLD or text, PDB, and OMF magnetic moment distribution 
     142       - A generic scattering calculator which takes an atomic, magnetic or  
     143         SLD distribution in space and generates the appropriate 2D  
     144         scattering pattern. In some cases the orientationally averaged  
     145         (powder) 1D scattering can also be computed. Supported formats  
     146         include: SLD or text, PDB, and OMF magnetic moment distribution  
    194147         file. 
    195        - An image viewer/converter for data in image format; this reads in 
    196          an image file and will attempt to convert the image pixels to 
     148       - An image viewer/converter for data in image format; this reads in  
     149         an image file and will attempt to convert the image pixels to  
    197150         data. Supported formats include: TIFF, TIF, PNG, BMP, JPG. 
    198151 
     
    222175     - Added more plot symbols options for 1d plots 
    223176     - Added improved trapping of compiling errors to the 'New model editor' 
    224      - Added some intelligent outputs (e.g., Rg, background, or rod diameter 
     177     - Added some intelligent outputs (e.g., Rg, background, or rod diameter  
    225178       depending on the choice of axis scale of the plot) to the linear fits 
    226179     - Added more models 
    227  
    228    - Feature set from previous versions 
     180      
     181   - Feature set from previous versions          
    229182     ----------------------------------- 
    230183     - Perspectives Available 
     
    232185         specific surface area. 
    233186       - P(r) inversion calculator: Indirect Fourier transformation method. 
    234        - Fitting: the tool used for modeling and fitting 1D and 2D data to 
     187       - Fitting: the tool used for modeling and fitting 1D and 2D data to  
    235188         analytical model functions 
    236189       - Tools: provides a number of useful supplementary tools such as SLD 
    237          calculation 
    238  
    239      - Fitting 
     190         calculation   
     191     
     192     - Fitting  
    240193       - Includes a large number of model functions, both form factors and structure factors. 
    241194       - Support P(Q)*S(Q) for form factors that flag they can be so multiplied. 
     
    245198       - Anisotropic shapes and magnetic moment modeling in 2D allow for a non-uniform 
    246199         distribution of orientations of a given axis leading to modeling and fitting 
    247          capabilities of non azimuthaly symmetric data. 
     200         capabilities of non azimuthaly symmetric data.   
    248201       - User can choose to weight fits or not. If using weights, the user can choose 
    249202         the error bar on each point if provided in the file, the square root 
    250          of the intensity or the intensity itself. 
     203         of the intensity or the intensity itself.  
    251204       - Instrumental resolution smearing of model or fits is provided with several 
    252205         options: read the resolution/point fromt he file. Input a pinhole resolution 
     
    261214         data set or several different sets simultaneously with the application 
    262215         of advanced constraints relating fit parameters to functions of other 
    263          parameters (including from a different set). For example thickness of 
    264          shell = sin(30) times the length. 
     216         parameters (including from a different set). For example thickness of  
     217         shell = sin(30) times the length.   
    265218       - Models that are the sum of two other models can be easily generated through the 
    266219         SUM Model menubar item. 
     
    271224         and the mathematical function of the model (box 2) and generating the 
    272225         necessary *.py file.  A separate advanced model editor provides a full Python 
    273          file editor.  Either way once saved the model becomes immediately available 
    274          to the application. 
     226         file editor.  Either way once saved the model becomes immediately available  
     227         to the application.  
    275228       - A batch fitting capability allows for the analysis of a series of data sets to 
    276229         a single model and provides the results in a tabular form suitable for saving 
    277230         or plotting the evolution of the fit parameters with error bars (from within 
    278231         the application). 
    279  
     232  
    280233     - Tools 
    281234       - A scattering length density calculator,including some X-ray information 
     
    287240       - A slit size calculator optimized for Anton Paar Saxess is provided. 
    288241       - A kiessig fringe thickness calculator is provided 
    289  
     242          
    290243     - Plots and plot management 
    291244       - A 3D graphing option (for 2d data/results) is provided with the view 
     
    301254       - Extensive context sensitive plot/fitting/manipulation options are available 
    302255         through a right mouse click pop-up menu on plots. 
    303  
     256            
    304257     - Data management 
    305258       - Supports 2 + column 1D ASCII data, NIST 1D and 2D data, and canSAS data 
    306          via plug-in mechanism which can easily allow other readers as appropriate. 
     259         via plug-in mechanism which can easily allow other readers as appropriate.  
    307260       - 2D data is expected in Q space but for historical reasons accepts the 
    308261         NIST 2D raw pixel format and will do conversion internally. 
     
    310263         right clicking on a data set and choosing Data Info in the DataExplorer 
    311264         or on the plots 
    312        - Supports loading a single file, multiple files, or a whole folder 
     265       - Supports loading a single file, multiple files, or a whole folder    
    313266       - An optional Data Explorer is provided (default) which simplifies managing, 
    314267         plotting, deleting, or setup for computation. Most functions however do 
     
    316269         right click menus and the toolbar.  The data explorer can be re-started 
    317270         from the menu bar. 
    318  
     271            
    319272     - Data manipulation 
    320273       - Support various 2D averaging methods : Circular, sectors, annular, 
     
    322275       - A 2D data maks editor is provided 
    323276       - 2D mask can be applied to the circular averaging. 
    324  
     277          
    325278     - Miscellaneous features 
    326279       - limited reports can be generated in pdf format 
     
    3432962- Downloading and Installing 
    344297============================= 
    345  
     298         
    346299   *** Note 1:  Much more information is available at www.sasview.org under links. 
    347300                    Look in the 'For Developers' section and particularly the wiki at 
     
    382335        - The following modules are required (version numbers are what are used 
    383336          in the windows release build): 
    384  
     337           
    385338          - Common Packages 
    386339            - reportlab 3.1.44 
     
    399352            - html5lib Version Installed: 0.99999 
    400353            - wx Version Installed: 3.0.2.0 
    401  
     354           
    402355          - Windows Specific Packages 
    403356            - pywin 219 
     
    405358            - comtypes 1.1.1 
    406359            - MinGW w/ gcc version 4.6.1 (WIN) 
    407             - vcredist_x86.exe (version 9.0.21022.8  -microsoft visual C 2008 
     360            - vcredist_x86.exe (version 9.0.21022.8  -microsoft visual C 2008  
    408361              re-distributable) 
    409362            - Innosetup (WIN - isetup 5.4.2-unicode) - used to create distributable 
     
    411364            *** Note: Windows build dependencies can be set up using anaconda. Instructions 
    412365                can be found at http://trac.sasview.org/wiki/AnacondaSetup 
    413  
     366             
    414367          - MAC Specifc Packages 
    415368            - py2app 0.7.1 
    416  
     369           
    417370 
    4183713- Known Issues 
     
    424377          equations will render properly. Until then they will show in their 
    425378          original TeX format. 
    426         - If the documentation window remains stubbornly blank, try installing a 
     379        - If the documentation window remains stubbornly blank, try installing a  
    427380          different browser and set that as your default browser. Issues have 
    428381          been noted with Internet Explorer 11. 
    429         - Check for Updates may fail (with the status bar message ' Cannot 
    430           connect to the application server') if your internet connection uses 
    431           a proxy server. Tested resolutions for this are described on the 
     382        - Check for Updates may fail (with the status bar message ' Cannot  
     383          connect to the application server') if your internet connection uses  
     384          a proxy server. Tested resolutions for this are described on the  
    432385          website FAQ. 
    433386        - The copy and paste functions (^C, ^V) in the batch mode results grid 
    434387          require two clicks: one to select the cell and a second to select the 
    435           contents of the cell. 
     388          contents of the cell.  
    436389        - The tutorial has not yet been updated and is somewhat out of date 
    437390        - Very old computers may struggle to run the 3.x and later releases 
     
    448401        - The angular distribution angles are not clearly defined and may in 
    449402          some cases lead to incorrect calculations(ticket #332) 
    450  
     403           
    451404   3.2- Windows: 
    452405        - If installed to same directory as old version without first removing 
     
    455408          have the old name even though pointing to the new version.  Usually 
    456409          safest to uninstall old version prior to installing new version anyway. 
    457  
     410                 
    458411   3.3- MAC: 
    459412        - Application normally starts up hidden. Click icon in Dock to view/use 
    460           application. 
     413          application.  
    461414        - Multiprocessing does not currently work on MAC OS 
    462  
     415                 
    463416   3.4- Linux: 
    464417        - Not well tested 
     
    468421================== 
    469422 
    470    - www.sasview.org.  This main project site is the gateway to all 
     423   - www.sasview.org.  This main project site is the gateway to all  
    471424     information about the sasview project.  It includes information 
    472425     about the project, a FAQ page and links to all developer and user 
     
    487440   - Latest developer builds 
    488441     - https://jenkins.esss.dk/sasview/view/Master-Builds/ 
     442 
     443     
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