[a9d5684] | 1 | """ |
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| 2 | Prototype plottable object support. |
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| 3 | |
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| 4 | The main point of this prototype is to provide a clean separation between |
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| 5 | the style (plotter details: color, grids, widgets, etc.) and substance |
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| 6 | (application details: which information to plot). Programmers should not be |
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| 7 | dictating line colours and plotting symbols. |
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| 8 | |
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| 9 | Unlike the problem of style in CSS or Word, where most paragraphs look |
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| 10 | the same, each line on a graph has to be distinguishable from its neighbours. |
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| 11 | Our solution is to provide parametric styles, in which a number of |
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| 12 | different classes of object (e.g., reflectometry data, reflectometry |
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| 13 | theory) representing multiple graph primitives cycle through a colour |
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| 14 | palette provided by the underlying plotter. |
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| 15 | |
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| 16 | A full treatment would provide perceptual dimensions of prominence and |
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| 17 | distinctiveness rather than a simple colour number. |
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| 18 | |
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| 19 | """ |
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| 20 | |
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| 21 | # Design question: who owns the color? |
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| 22 | # Is it a property of the plottable? |
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| 23 | # Or of the plottable as it exists on the graph? |
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| 24 | # Or if the graph? |
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| 25 | # If a plottable can appear on multiple graphs, in some case the |
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| 26 | # color should be the same on each graph in which it appears, and |
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| 27 | # in other cases (where multiple plottables from different graphs |
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| 28 | # coexist), the color should be assigned by the graph. In any case |
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| 29 | # once a plottable is placed on the graph its color should not |
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| 30 | # depend on the other plottables on the graph. Furthermore, if |
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| 31 | # a plottable is added and removed from a graph and added again, |
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| 32 | # it may be nice, but not necessary, to have the color persist. |
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| 33 | # |
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| 34 | # The safest approach seems to be to give ownership of color |
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| 35 | # to the graph, which will allocate the colors along with the |
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| 36 | # plottable. The plottable will need to return the number of |
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| 37 | # colors that are needed. |
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| 38 | # |
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| 39 | # The situation is less clear for symbols. It is less clear |
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| 40 | # how much the application requires that symbols be unique across |
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| 41 | # all plots on the graph. |
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| 42 | |
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| 43 | # Support for ancient python versions |
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| 44 | import copy |
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[9a5097c] | 45 | import numpy as np |
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[a9d5684] | 46 | import sys |
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[3477478] | 47 | import logging |
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[a9d5684] | 48 | |
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[463e7ffc] | 49 | logger = logging.getLogger(__name__) |
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[c155a16] | 50 | |
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[a9d5684] | 51 | if 'any' not in dir(__builtins__): |
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| 52 | def any(L): |
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| 53 | for cond in L: |
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| 54 | if cond: |
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| 55 | return True |
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| 56 | return False |
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[3477478] | 57 | |
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[a9d5684] | 58 | def all(L): |
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| 59 | for cond in L: |
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| 60 | if not cond: |
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| 61 | return False |
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| 62 | return True |
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| 63 | |
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| 64 | |
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[3477478] | 65 | class Graph(object): |
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[a9d5684] | 66 | """ |
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| 67 | Generic plottables graph structure. |
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[3477478] | 68 | |
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[a9d5684] | 69 | Plot styles are based on color/symbol lists. The user gets to select |
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| 70 | the list of colors/symbols/sizes to choose from, not the application |
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| 71 | developer. The programmer only gets to add/remove lines from the |
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| 72 | plot and move to the next symbol/color. |
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| 73 | |
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| 74 | Another dimension is prominence, which refers to line sizes/point sizes. |
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| 75 | |
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| 76 | Axis transformations allow the user to select the coordinate view |
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| 77 | which provides clarity to the data. There is no way we can provide |
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| 78 | every possible transformation for every application generically, so |
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| 79 | the plottable objects themselves will need to provide the transformations. |
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| 80 | Here are some examples from reflectometry: :: |
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[3477478] | 81 | |
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[a9d5684] | 82 | independent: x -> f(x) |
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| 83 | monitor scaling: y -> M*y |
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| 84 | log: y -> log(y if y > min else min) |
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| 85 | cos: y -> cos(y*pi/180) |
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| 86 | dependent: x -> f(x,y) |
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| 87 | Q4: y -> y*x^4 |
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| 88 | fresnel: y -> y*fresnel(x) |
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| 89 | coordinated: x,y = f(x,y) |
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| 90 | Q: x -> 2*pi/L (cos(x*pi/180) - cos(y*pi/180)) |
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| 91 | y -> 2*pi/L (sin(x*pi/180) + sin(y*pi/180)) |
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| 92 | reducing: x,y = f(x1,x2,y1,y2) |
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| 93 | spin asymmetry: x -> x1, y -> (y1 - y2)/(y1 + y2) |
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| 94 | vector net: x -> x1, y -> y1*cos(y2*pi/180) |
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[3477478] | 95 | |
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[a9d5684] | 96 | Multiple transformations are possible, such as Q4 spin asymmetry |
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| 97 | |
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| 98 | Axes have further complications in that the units of what are being |
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| 99 | plotted should correspond to the units on the axes. Plotting multiple |
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| 100 | types on the same graph should be handled gracefully, e.g., by creating |
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| 101 | a separate tab for each available axis type, breaking into subplots, |
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| 102 | showing multiple axes on the same plot, or generating inset plots. |
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| 103 | Ultimately the decision should be left to the user. |
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| 104 | |
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| 105 | Graph properties such as grids/crosshairs should be under user control, |
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| 106 | as should the sizes of items such as axis fonts, etc. No direct |
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| 107 | access will be provided to the application. |
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| 108 | |
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| 109 | Axis limits are mostly under user control. If the user has zoomed or |
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| 110 | panned then those limits are preserved even if new data is plotted. |
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| 111 | The exception is when, e.g., scanning through a set of related lines |
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| 112 | in which the user may want to fix the limits so that user can compare |
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| 113 | the values directly. Another exception is when creating multiple |
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| 114 | graphs sharing the same limits, though this case may be important |
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| 115 | enough that it is handled by the graph widget itself. Axis limits |
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| 116 | will of course have to understand the effects of axis transformations. |
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| 117 | |
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| 118 | High level plottable objects may be composed of low level primitives. |
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| 119 | Operations such as legend/hide/show copy/paste, etc. need to operate |
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| 120 | on these primitives as a group. E.g., allowing the user to have a |
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| 121 | working canvas where they can drag lines they want to save and annotate |
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| 122 | them. |
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| 123 | |
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| 124 | Graphs need to be printable. A page layout program for entire plots |
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| 125 | would be nice. |
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[3477478] | 126 | |
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[a9d5684] | 127 | """ |
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| 128 | def _xaxis_transformed(self, name, units): |
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| 129 | """ |
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| 130 | Change the property of the x axis |
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| 131 | according to an axis transformation |
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| 132 | (as opposed to changing the basic properties) |
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| 133 | """ |
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| 134 | if units != "": |
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| 135 | name = "%s (%s)" % (name, units) |
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| 136 | self.prop["xlabel"] = name |
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| 137 | self.prop["xunit"] = units |
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[3477478] | 138 | |
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[a9d5684] | 139 | def _yaxis_transformed(self, name, units): |
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| 140 | """ |
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| 141 | Change the property of the y axis |
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| 142 | according to an axis transformation |
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| 143 | (as opposed to changing the basic properties) |
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| 144 | """ |
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| 145 | if units != "": |
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| 146 | name = "%s (%s)" % (name, units) |
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| 147 | self.prop["ylabel"] = name |
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| 148 | self.prop["yunit"] = units |
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[3477478] | 149 | |
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[a9d5684] | 150 | def xaxis(self, name, units): |
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| 151 | """ |
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| 152 | Properties of the x axis. |
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| 153 | """ |
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| 154 | if units != "": |
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| 155 | name = "%s (%s)" % (name, units) |
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| 156 | self.prop["xlabel"] = name |
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| 157 | self.prop["xunit"] = units |
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| 158 | self.prop["xlabel_base"] = name |
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| 159 | self.prop["xunit_base"] = units |
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| 160 | |
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| 161 | def yaxis(self, name, units): |
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| 162 | """ |
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| 163 | Properties of the y axis. |
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| 164 | """ |
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| 165 | if units != "": |
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| 166 | name = "%s (%s)" % (name, units) |
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| 167 | self.prop["ylabel"] = name |
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| 168 | self.prop["yunit"] = units |
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| 169 | self.prop["ylabel_base"] = name |
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| 170 | self.prop["yunit_base"] = units |
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[3477478] | 171 | |
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[a9d5684] | 172 | def title(self, name): |
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| 173 | """ |
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| 174 | Graph title |
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| 175 | """ |
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| 176 | self.prop["title"] = name |
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[3477478] | 177 | |
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[a9d5684] | 178 | def get(self, key): |
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| 179 | """ |
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| 180 | Get the graph properties |
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| 181 | """ |
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| 182 | if key == "color": |
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| 183 | return self.color |
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| 184 | elif key == "symbol": |
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| 185 | return self.symbol |
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| 186 | else: |
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| 187 | return self.prop[key] |
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| 188 | |
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| 189 | def set(self, **kw): |
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| 190 | """ |
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| 191 | Set the graph properties |
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| 192 | """ |
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| 193 | for key in kw: |
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| 194 | if key == "color": |
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| 195 | self.color = kw[key] % len(self.colorlist) |
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| 196 | elif key == "symbol": |
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| 197 | self.symbol = kw[key] % len(self.symbollist) |
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| 198 | else: |
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| 199 | self.prop[key] = kw[key] |
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| 200 | |
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| 201 | def isPlotted(self, plottable): |
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| 202 | """Return True is the plottable is already on the graph""" |
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| 203 | if plottable in self.plottables: |
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| 204 | return True |
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| 205 | return False |
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| 206 | |
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| 207 | def add(self, plottable, color=None): |
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| 208 | """Add a new plottable to the graph""" |
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| 209 | # record the colour associated with the plottable |
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| 210 | if not plottable in self.plottables: |
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| 211 | if color is not None: |
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| 212 | self.plottables[plottable] = color |
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| 213 | else: |
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| 214 | self.color += plottable.colors() |
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| 215 | self.plottables[plottable] = self.color |
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[80f4684] | 216 | plottable.custom_color = self.color |
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[a9d5684] | 217 | |
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| 218 | def changed(self): |
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| 219 | """Detect if any graphed plottables have changed""" |
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| 220 | return any([p.changed() for p in self.plottables]) |
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[3477478] | 221 | |
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[a9d5684] | 222 | def get_range(self): |
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| 223 | """ |
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| 224 | Return the range of all displayed plottables |
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| 225 | """ |
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[3477478] | 226 | min_value = None |
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| 227 | max_value = None |
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[a9d5684] | 228 | for p in self.plottables: |
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| 229 | if p.hidden == True: |
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| 230 | continue |
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[ac07a3a] | 231 | if p.x is not None: |
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[a9d5684] | 232 | for x_i in p.x: |
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[235f514] | 233 | if min_value is None or x_i < min_value: |
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[3477478] | 234 | min_value = x_i |
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[235f514] | 235 | if max_value is None or x_i > max_value: |
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[3477478] | 236 | max_value = x_i |
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| 237 | return min_value, max_value |
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| 238 | |
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[a9d5684] | 239 | def replace(self, plottable): |
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| 240 | """Replace an existing plottable from the graph""" |
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| 241 | selected_color = None |
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| 242 | selected_plottable = None |
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| 243 | for p in self.plottables.keys(): |
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| 244 | if plottable.id == p.id: |
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| 245 | selected_plottable = p |
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| 246 | selected_color = self.plottables[p] |
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| 247 | break |
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| 248 | if selected_plottable is not None and selected_color is not None: |
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| 249 | del self.plottables[selected_plottable] |
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| 250 | self.plottables[plottable] = selected_color |
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| 251 | |
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| 252 | def delete(self, plottable): |
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| 253 | """Remove an existing plottable from the graph""" |
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| 254 | if plottable in self.plottables: |
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| 255 | del self.plottables[plottable] |
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| 256 | self.color = len(self.plottables) |
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[3477478] | 257 | |
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[a9d5684] | 258 | def reset_scale(self): |
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| 259 | """ |
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| 260 | Resets the scale transformation data to the underlying data |
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| 261 | """ |
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| 262 | for p in self.plottables: |
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| 263 | p.reset_view() |
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| 264 | |
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| 265 | def reset(self): |
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| 266 | """Reset the graph.""" |
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| 267 | self.color = -1 |
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| 268 | self.symbol = 0 |
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| 269 | self.prop = {"xlabel": "", "xunit": None, |
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| 270 | "ylabel": "", "yunit": None, |
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| 271 | "title": ""} |
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| 272 | self.plottables = {} |
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[3477478] | 273 | |
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[a9d5684] | 274 | def _make_labels(self): |
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| 275 | """ |
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| 276 | """ |
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| 277 | # Find groups of related plottables |
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| 278 | sets = {} |
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| 279 | for p in self.plottables: |
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| 280 | if p.__class__ in sets: |
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| 281 | sets[p.__class__].append(p) |
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| 282 | else: |
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| 283 | sets[p.__class__] = [p] |
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| 284 | # Ask each plottable class for a set of unique labels |
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| 285 | labels = {} |
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| 286 | for c in sets: |
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| 287 | labels.update(c.labels(sets[c])) |
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| 288 | return labels |
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[3477478] | 289 | |
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[a9d5684] | 290 | def get_plottable(self, name): |
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| 291 | """ |
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| 292 | Return the plottable with the given |
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| 293 | name if it exists. Otherwise return None |
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| 294 | """ |
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| 295 | for item in self.plottables: |
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| 296 | if item.name == name: |
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| 297 | return item |
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| 298 | return None |
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[3477478] | 299 | |
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[a9d5684] | 300 | def returnPlottable(self): |
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| 301 | """ |
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| 302 | This method returns a dictionary of plottables contained in graph |
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| 303 | It is just by Plotpanel to interact with the complete list of plottables |
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| 304 | inside the graph. |
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| 305 | """ |
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| 306 | return self.plottables |
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[3477478] | 307 | |
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| 308 | def render(self, plot): |
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[a9d5684] | 309 | """Redraw the graph""" |
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| 310 | plot.connect.clearall() |
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| 311 | plot.clear() |
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| 312 | plot.properties(self.prop) |
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| 313 | labels = self._make_labels() |
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| 314 | for p in self.plottables: |
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| 315 | if p.custom_color is not None: |
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| 316 | p.render(plot, color=p.custom_color, symbol=0, |
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[3477478] | 317 | markersize=p.markersize, label=labels[p]) |
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[a9d5684] | 318 | else: |
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| 319 | p.render(plot, color=self.plottables[p], symbol=0, |
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[3477478] | 320 | markersize=p.markersize, label=labels[p]) |
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[a9d5684] | 321 | plot.render() |
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[3477478] | 322 | |
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[a9d5684] | 323 | def __init__(self, **kw): |
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| 324 | self.reset() |
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| 325 | self.set(**kw) |
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| 326 | # Name of selected plottable, if any |
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| 327 | self.selected_plottable = None |
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| 328 | |
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| 329 | |
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| 330 | # Transform interface definition |
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| 331 | # No need to inherit from this class, just need to provide |
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| 332 | # the same methods. |
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[3477478] | 333 | class Transform(object): |
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[a9d5684] | 334 | """ |
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| 335 | Define a transform plugin to the plottable architecture. |
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[3477478] | 336 | |
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[a9d5684] | 337 | Transforms operate on axes. The plottable defines the |
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| 338 | set of transforms available for it, and the axes on which |
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| 339 | they operate. These transforms can operate on the x axis |
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| 340 | only, the y axis only or on the x and y axes together. |
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[3477478] | 341 | |
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[a9d5684] | 342 | This infrastructure is not able to support transformations |
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| 343 | such as log and polar plots as these require full control |
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| 344 | over the drawing of axes and grids. |
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[3477478] | 345 | |
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[a9d5684] | 346 | A transform has a number of attributes. |
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[3477478] | 347 | |
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[51f14603] | 348 | name |
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| 349 | user visible name for the transform. This will |
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| 350 | appear in the context menu for the axis and the transform |
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| 351 | menu for the graph. |
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[3477478] | 352 | |
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[51f14603] | 353 | type |
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| 354 | operational axis. This determines whether the |
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| 355 | transform should appear on x,y or z axis context |
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| 356 | menus, or if it should appear in the context menu for |
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| 357 | the graph. |
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[3477478] | 358 | |
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[51f14603] | 359 | inventory |
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[3477478] | 360 | (not implemented) |
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[51f14603] | 361 | a dictionary of user settable parameter names and |
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| 362 | their associated types. These should appear as keyword |
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| 363 | arguments to the transform call. For example, Fresnel |
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| 364 | reflectivity requires the substrate density: |
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[3477478] | 365 | ``{ 'rho': type.Value(10e-6/units.angstrom**2) }`` |
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[51f14603] | 366 | Supply reasonable defaults in the callback so that |
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| 367 | limited plotting clients work even though they cannot |
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| 368 | set the inventory. |
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[3477478] | 369 | |
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[a9d5684] | 370 | """ |
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| 371 | def __call__(self, plottable, **kwargs): |
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| 372 | """ |
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| 373 | Transform the data. Whenever a plottable is added |
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| 374 | to the axes, the infrastructure will apply all required |
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| 375 | transforms. When the user selects a different representation |
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| 376 | for the axes (via menu, script, or context menu), all |
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| 377 | plottables on the axes will be transformed. The |
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| 378 | plottable should store the underlying data but set |
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| 379 | the standard x,dx,y,dy,z,dz attributes appropriately. |
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[3477478] | 380 | |
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[a9d5684] | 381 | If the call raises a NotImplemented error the dataline |
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| 382 | will not be plotted. The associated string will usually |
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| 383 | be 'Not a valid transform', though other strings are possible. |
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| 384 | The application may or may not display the message to the |
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| 385 | user, along with an indication of which plottable was at fault. |
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[3477478] | 386 | |
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[a9d5684] | 387 | """ |
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| 388 | raise NotImplemented, "Not a valid transform" |
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| 389 | |
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| 390 | # Related issues |
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| 391 | # ============== |
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| 392 | # |
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| 393 | # log scale: |
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| 394 | # All axes have implicit log/linear scaling options. |
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| 395 | # |
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| 396 | # normalization: |
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| 397 | # Want to display raw counts vs detector efficiency correction |
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| 398 | # Want to normalize by time/monitor/proton current/intensity. |
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| 399 | # Want to display by eg. counts per 3 sec or counts per 10000 monitor. |
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| 400 | # Want to divide by footprint (ab initio, fitted or measured). |
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| 401 | # Want to scale by attenuator values. |
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| 402 | # |
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| 403 | # compare/contrast: |
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| 404 | # Want to average all visible lines with the same tag, and |
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| 405 | # display difference from one particular line. Not a transform |
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| 406 | # issue? |
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| 407 | # |
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| 408 | # multiline graph: |
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| 409 | # How do we show/hide data parts. E.g., data or theory, or |
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| 410 | # different polarization cross sections? One way is with |
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| 411 | # tags: each plottable has a set of tags and the tags are |
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| 412 | # listed as check boxes above the plotting area. Click a |
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| 413 | # tag and all plottables with that tag are hidden on the |
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| 414 | # plot and on the legend. |
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| 415 | # |
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| 416 | # nonconformant y-axes: |
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| 417 | # What do we do with temperature vs. Q and reflectivity vs. Q |
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| 418 | # on the same graph? |
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| 419 | # |
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| 420 | # 2D -> 1D: |
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| 421 | # Want various slices through the data. Do transforms apply |
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| 422 | # to the sliced data as well? |
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| 423 | |
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| 424 | |
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| 425 | class Plottable(object): |
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| 426 | """ |
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| 427 | """ |
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| 428 | # Short ascii name to refer to the plottable in a menu |
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| 429 | short_name = None |
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| 430 | # Fancy name |
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| 431 | name = None |
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| 432 | # Data |
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[3477478] | 433 | x = None |
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| 434 | y = None |
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[a9d5684] | 435 | dx = None |
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| 436 | dy = None |
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| 437 | # Parameter to allow a plot to be part of the list without being displayed |
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| 438 | hidden = False |
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| 439 | # Flag to set whether a plottable has an interactor or not |
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| 440 | interactive = True |
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| 441 | custom_color = None |
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| 442 | markersize = 5 # default marker size is 'size 5' |
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[3477478] | 443 | |
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[a9d5684] | 444 | def __init__(self): |
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| 445 | self.view = View() |
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| 446 | self._xaxis = "" |
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| 447 | self._xunit = "" |
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| 448 | self._yaxis = "" |
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| 449 | self._yunit = "" |
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[3477478] | 450 | |
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[a9d5684] | 451 | def __setattr__(self, name, value): |
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| 452 | """ |
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| 453 | Take care of changes in View when data is changed. |
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| 454 | This method is provided for backward compatibility. |
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| 455 | """ |
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| 456 | object.__setattr__(self, name, value) |
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| 457 | if name in ['x', 'y', 'dx', 'dy']: |
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| 458 | self.reset_view() |
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[3477478] | 459 | # print "self.%s has been called" % name |
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[a9d5684] | 460 | |
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| 461 | def set_data(self, x, y, dx=None, dy=None): |
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| 462 | """ |
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| 463 | """ |
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| 464 | self.x = x |
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| 465 | self.y = y |
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| 466 | self.dy = dy |
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| 467 | self.dx = dx |
---|
| 468 | self.transformView() |
---|
[3477478] | 469 | |
---|
[a9d5684] | 470 | def xaxis(self, name, units): |
---|
| 471 | """ |
---|
| 472 | Set the name and unit of x_axis |
---|
[3477478] | 473 | |
---|
[a9d5684] | 474 | :param name: the name of x-axis |
---|
| 475 | :param units: the units of x_axis |
---|
[3477478] | 476 | |
---|
[a9d5684] | 477 | """ |
---|
| 478 | self._xaxis = name |
---|
| 479 | self._xunit = units |
---|
| 480 | |
---|
| 481 | def yaxis(self, name, units): |
---|
| 482 | """ |
---|
| 483 | Set the name and unit of y_axis |
---|
[3477478] | 484 | |
---|
[a9d5684] | 485 | :param name: the name of y-axis |
---|
| 486 | :param units: the units of y_axis |
---|
[3477478] | 487 | |
---|
[a9d5684] | 488 | """ |
---|
| 489 | self._yaxis = name |
---|
| 490 | self._yunit = units |
---|
[3477478] | 491 | |
---|
[a9d5684] | 492 | def get_xaxis(self): |
---|
| 493 | """Return the units and name of x-axis""" |
---|
| 494 | return self._xaxis, self._xunit |
---|
[3477478] | 495 | |
---|
[a9d5684] | 496 | def get_yaxis(self): |
---|
| 497 | """ Return the units and name of y- axis""" |
---|
| 498 | return self._yaxis, self._yunit |
---|
| 499 | |
---|
| 500 | @classmethod |
---|
| 501 | def labels(cls, collection): |
---|
| 502 | """ |
---|
| 503 | Construct a set of unique labels for a collection of plottables of |
---|
| 504 | the same type. |
---|
[3477478] | 505 | |
---|
[a9d5684] | 506 | Returns a map from plottable to name. |
---|
[3477478] | 507 | |
---|
[a9d5684] | 508 | """ |
---|
| 509 | n = len(collection) |
---|
[3477478] | 510 | label_dict = {} |
---|
[a9d5684] | 511 | if n > 0: |
---|
| 512 | basename = str(cls).split('.')[-1] |
---|
| 513 | if n == 1: |
---|
[3477478] | 514 | label_dict[collection[0]] = basename |
---|
[a9d5684] | 515 | else: |
---|
| 516 | for i in xrange(len(collection)): |
---|
[3477478] | 517 | label_dict[collection[i]] = "%s %d" % (basename, i) |
---|
| 518 | return label_dict |
---|
[a9d5684] | 519 | |
---|
[3477478] | 520 | # #Use the following if @classmethod doesn't work |
---|
[a9d5684] | 521 | # labels = classmethod(labels) |
---|
| 522 | def setLabel(self, labelx, labely): |
---|
| 523 | """ |
---|
| 524 | It takes a label of the x and y transformation and set View parameters |
---|
[3477478] | 525 | |
---|
[a9d5684] | 526 | :param transx: The label of x transformation is sent by Properties Dialog |
---|
| 527 | :param transy: The label of y transformation is sent Properties Dialog |
---|
[3477478] | 528 | |
---|
[a9d5684] | 529 | """ |
---|
| 530 | self.view.xLabel = labelx |
---|
| 531 | self.view.yLabel = labely |
---|
[3477478] | 532 | |
---|
[a9d5684] | 533 | def set_View(self, x, y): |
---|
| 534 | """Load View""" |
---|
| 535 | self.x = x |
---|
| 536 | self.y = y |
---|
| 537 | self.reset_view() |
---|
[3477478] | 538 | |
---|
[a9d5684] | 539 | def reset_view(self): |
---|
| 540 | """Reload view with new value to plot""" |
---|
| 541 | self.view = View(self.x, self.y, self.dx, self.dy) |
---|
| 542 | self.view.Xreel = self.view.x |
---|
| 543 | self.view.Yreel = self.view.y |
---|
| 544 | self.view.DXreel = self.view.dx |
---|
| 545 | self.view.DYreel = self.view.dy |
---|
[3477478] | 546 | |
---|
[a9d5684] | 547 | def render(self, plot): |
---|
| 548 | """ |
---|
| 549 | The base class makes sure the correct units are being used for |
---|
| 550 | subsequent plottable. |
---|
[3477478] | 551 | |
---|
[a9d5684] | 552 | For now it is assumed that the graphs are commensurate, and if you |
---|
[3477478] | 553 | put a Qx object on a Temperature graph then you had better hope |
---|
[a9d5684] | 554 | that it makes sense. |
---|
[3477478] | 555 | |
---|
[a9d5684] | 556 | """ |
---|
| 557 | plot.xaxis(self._xaxis, self._xunit) |
---|
| 558 | plot.yaxis(self._yaxis, self._yunit) |
---|
[3477478] | 559 | |
---|
[a9d5684] | 560 | def is_empty(self): |
---|
| 561 | """ |
---|
| 562 | Returns True if there is no data stored in the plottable |
---|
| 563 | """ |
---|
[45dffa69] | 564 | if (self.x is not None and len(self.x) == 0 |
---|
| 565 | and self.y is not None and len(self.y) == 0): |
---|
[a9d5684] | 566 | return True |
---|
| 567 | return False |
---|
[3477478] | 568 | |
---|
[a9d5684] | 569 | def colors(self): |
---|
| 570 | """Return the number of colors need to render the object""" |
---|
| 571 | return 1 |
---|
[3477478] | 572 | |
---|
[a9d5684] | 573 | def transformView(self): |
---|
| 574 | """ |
---|
| 575 | It transforms x, y before displaying |
---|
| 576 | """ |
---|
| 577 | self.view.transform(self.x, self.y, self.dx, self.dy) |
---|
[3477478] | 578 | |
---|
[a9d5684] | 579 | def returnValuesOfView(self): |
---|
| 580 | """ |
---|
| 581 | Return View parameters and it is used by Fit Dialog |
---|
| 582 | """ |
---|
| 583 | return self.view.returnXview() |
---|
[3477478] | 584 | |
---|
[a9d5684] | 585 | def check_data_PlottableX(self): |
---|
| 586 | """ |
---|
| 587 | Since no transformation is made for log10(x), check that |
---|
| 588 | no negative values is plot in log scale |
---|
| 589 | """ |
---|
| 590 | self.view.check_data_logX() |
---|
[3477478] | 591 | |
---|
[a9d5684] | 592 | def check_data_PlottableY(self): |
---|
| 593 | """ |
---|
[3477478] | 594 | Since no transformation is made for log10(y), check that |
---|
[a9d5684] | 595 | no negative values is plot in log scale |
---|
| 596 | """ |
---|
| 597 | self.view.check_data_logY() |
---|
[3477478] | 598 | |
---|
[a9d5684] | 599 | def transformX(self, transx, transdx): |
---|
| 600 | """ |
---|
| 601 | Receive pointers to function that transform x and dx |
---|
| 602 | and set corresponding View pointers |
---|
[3477478] | 603 | |
---|
[a9d5684] | 604 | :param transx: pointer to function that transforms x |
---|
| 605 | :param transdx: pointer to function that transforms dx |
---|
[3477478] | 606 | |
---|
[a9d5684] | 607 | """ |
---|
| 608 | self.view.setTransformX(transx, transdx) |
---|
[3477478] | 609 | |
---|
[a9d5684] | 610 | def transformY(self, transy, transdy): |
---|
| 611 | """ |
---|
| 612 | Receive pointers to function that transform y and dy |
---|
| 613 | and set corresponding View pointers |
---|
[3477478] | 614 | |
---|
[a9d5684] | 615 | :param transy: pointer to function that transforms y |
---|
| 616 | :param transdy: pointer to function that transforms dy |
---|
[3477478] | 617 | |
---|
[a9d5684] | 618 | """ |
---|
| 619 | self.view.setTransformY(transy, transdy) |
---|
[3477478] | 620 | |
---|
[a9d5684] | 621 | def onReset(self): |
---|
| 622 | """ |
---|
| 623 | Reset x, y, dx, dy view with its parameters |
---|
| 624 | """ |
---|
| 625 | self.view.onResetView() |
---|
[3477478] | 626 | |
---|
[a9d5684] | 627 | def onFitRange(self, xmin=None, xmax=None): |
---|
| 628 | """ |
---|
| 629 | It limits View data range to plot from min to max |
---|
[3477478] | 630 | |
---|
[a9d5684] | 631 | :param xmin: the minimum value of x to plot. |
---|
| 632 | :param xmax: the maximum value of x to plot |
---|
[3477478] | 633 | |
---|
[a9d5684] | 634 | """ |
---|
| 635 | self.view.onFitRangeView(xmin, xmax) |
---|
[3477478] | 636 | |
---|
| 637 | |
---|
| 638 | class View(object): |
---|
[a9d5684] | 639 | """ |
---|
| 640 | Representation of the data that might include a transformation |
---|
| 641 | """ |
---|
| 642 | x = None |
---|
| 643 | y = None |
---|
| 644 | dx = None |
---|
| 645 | dy = None |
---|
| 646 | |
---|
| 647 | def __init__(self, x=None, y=None, dx=None, dy=None): |
---|
| 648 | """ |
---|
| 649 | """ |
---|
| 650 | self.x = x |
---|
| 651 | self.y = y |
---|
| 652 | self.dx = dx |
---|
| 653 | self.dy = dy |
---|
| 654 | # To change x range to the reel range |
---|
| 655 | self.Xreel = self.x |
---|
| 656 | self.Yreel = self.y |
---|
| 657 | self.DXreel = self.dx |
---|
| 658 | self.DYreel = self.dy |
---|
| 659 | # Labels of x and y received from Properties Dialog |
---|
| 660 | self.xLabel = "" |
---|
| 661 | self.yLabel = "" |
---|
| 662 | # Function to transform x, y, dx and dy |
---|
| 663 | self.funcx = None |
---|
| 664 | self.funcy = None |
---|
| 665 | self.funcdx = None |
---|
| 666 | self.funcdy = None |
---|
| 667 | |
---|
| 668 | def transform(self, x=None, y=None, dx=None, dy=None): |
---|
| 669 | """ |
---|
| 670 | Transforms the x,y,dx and dy vectors and stores |
---|
| 671 | the output in View parameters |
---|
| 672 | |
---|
| 673 | :param x: array of x values |
---|
| 674 | :param y: array of y values |
---|
| 675 | :param dx: array of errors values on x |
---|
| 676 | :param dy: array of error values on y |
---|
[3477478] | 677 | |
---|
[a9d5684] | 678 | """ |
---|
| 679 | # Sanity check |
---|
| 680 | # Do the transofrmation only when x and y are empty |
---|
[235f514] | 681 | has_err_x = not (dx is None or len(dx) == 0) |
---|
| 682 | has_err_y = not (dy is None or len(dy) == 0) |
---|
[3477478] | 683 | |
---|
[7432acb] | 684 | if(x is not None) and (y is not None): |
---|
[45dffa69] | 685 | if dx is not None and not len(dx) == 0 and not len(x) == len(dx): |
---|
[a9d5684] | 686 | msg = "Plottable.View: Given x and dx are not" |
---|
| 687 | msg += " of the same length" |
---|
| 688 | raise ValueError, msg |
---|
| 689 | # Check length of y array |
---|
| 690 | if not len(y) == len(x): |
---|
| 691 | msg = "Plottable.View: Given y " |
---|
| 692 | msg += "and x are not of the same length" |
---|
| 693 | raise ValueError, msg |
---|
[3477478] | 694 | |
---|
[45dffa69] | 695 | if dy is not None and not len(dy) == 0 and not len(y) == len(dy): |
---|
[a9d5684] | 696 | msg = "Plottable.View: Given y and dy are not of the same " |
---|
| 697 | msg += "length: len(y)=%s, len(dy)=%s" % (len(y), len(dy)) |
---|
| 698 | raise ValueError, msg |
---|
| 699 | self.x = [] |
---|
| 700 | self.y = [] |
---|
| 701 | if has_err_x: |
---|
| 702 | self.dx = [] |
---|
| 703 | else: |
---|
| 704 | self.dx = None |
---|
| 705 | if has_err_y: |
---|
| 706 | self.dy = [] |
---|
| 707 | else: |
---|
| 708 | self.dy = None |
---|
| 709 | if not has_err_x: |
---|
[9a5097c] | 710 | dx = np.zeros(len(x)) |
---|
[a9d5684] | 711 | if not has_err_y: |
---|
[9a5097c] | 712 | dy = np.zeros(len(y)) |
---|
[a9d5684] | 713 | for i in range(len(x)): |
---|
| 714 | try: |
---|
| 715 | tempx = self.funcx(x[i], y[i]) |
---|
| 716 | tempy = self.funcy(y[i], x[i]) |
---|
| 717 | if has_err_x: |
---|
| 718 | tempdx = self.funcdx(x[i], y[i], dx[i], dy[i]) |
---|
| 719 | if has_err_y: |
---|
| 720 | tempdy = self.funcdy(y[i], x[i], dy[i], dx[i]) |
---|
| 721 | self.x.append(tempx) |
---|
| 722 | self.y.append(tempy) |
---|
| 723 | if has_err_x: |
---|
| 724 | self.dx.append(tempdx) |
---|
| 725 | if has_err_y: |
---|
| 726 | self.dy.append(tempdy) |
---|
[cd54205] | 727 | except Exception: |
---|
| 728 | pass |
---|
[a9d5684] | 729 | # Sanity check |
---|
| 730 | if not len(self.x) == len(self.y): |
---|
| 731 | msg = "Plottable.View: transformed x " |
---|
| 732 | msg += "and y are not of the same length" |
---|
| 733 | raise ValueError, msg |
---|
[cd54205] | 734 | if has_err_x and not (len(self.x) == len(self.dx)): |
---|
[a9d5684] | 735 | msg = "Plottable.View: transformed x and dx" |
---|
| 736 | msg += " are not of the same length" |
---|
| 737 | raise ValueError, msg |
---|
[cd54205] | 738 | if has_err_y and not (len(self.y) == len(self.dy)): |
---|
[a9d5684] | 739 | msg = "Plottable.View: transformed y" |
---|
| 740 | msg += " and dy are not of the same length" |
---|
| 741 | raise ValueError, msg |
---|
| 742 | # Check that negative values are not plot on x and y axis for |
---|
| 743 | # log10 transformation |
---|
| 744 | self.check_data_logX() |
---|
| 745 | self.check_data_logY() |
---|
| 746 | # Store x ,y dx,and dy in their full range for reset |
---|
| 747 | self.Xreel = self.x |
---|
| 748 | self.Yreel = self.y |
---|
| 749 | self.DXreel = self.dx |
---|
| 750 | self.DYreel = self.dy |
---|
[3477478] | 751 | |
---|
[a9d5684] | 752 | def onResetView(self): |
---|
| 753 | """ |
---|
| 754 | Reset x,y,dx and y in their full range and in the initial scale |
---|
| 755 | in case their previous range has changed |
---|
| 756 | """ |
---|
| 757 | self.x = self.Xreel |
---|
| 758 | self.y = self.Yreel |
---|
| 759 | self.dx = self.DXreel |
---|
| 760 | self.dy = self.DYreel |
---|
[3477478] | 761 | |
---|
[a9d5684] | 762 | def setTransformX(self, funcx, funcdx): |
---|
| 763 | """ |
---|
| 764 | Receive pointers to function that transform x and dx |
---|
| 765 | and set corresponding View pointers |
---|
[3477478] | 766 | |
---|
[a9d5684] | 767 | :param transx: pointer to function that transforms x |
---|
| 768 | :param transdx: pointer to function that transforms dx |
---|
| 769 | """ |
---|
| 770 | self.funcx = funcx |
---|
| 771 | self.funcdx = funcdx |
---|
[3477478] | 772 | |
---|
[a9d5684] | 773 | def setTransformY(self, funcy, funcdy): |
---|
| 774 | """ |
---|
| 775 | Receive pointers to function that transform y and dy |
---|
| 776 | and set corresponding View pointers |
---|
[3477478] | 777 | |
---|
[a9d5684] | 778 | :param transx: pointer to function that transforms y |
---|
| 779 | :param transdx: pointer to function that transforms dy |
---|
| 780 | """ |
---|
| 781 | self.funcy = funcy |
---|
| 782 | self.funcdy = funcdy |
---|
[3477478] | 783 | |
---|
[a9d5684] | 784 | def returnXview(self): |
---|
| 785 | """ |
---|
| 786 | Return View x,y,dx,dy |
---|
| 787 | """ |
---|
| 788 | return self.x, self.y, self.dx, self.dy |
---|
[3477478] | 789 | |
---|
[a9d5684] | 790 | def check_data_logX(self): |
---|
| 791 | """ |
---|
| 792 | Remove negative value in x vector to avoid plotting negative |
---|
| 793 | value of Log10 |
---|
| 794 | """ |
---|
| 795 | tempx = [] |
---|
| 796 | tempdx = [] |
---|
| 797 | tempy = [] |
---|
| 798 | tempdy = [] |
---|
[235f514] | 799 | if self.dx is None: |
---|
[9a5097c] | 800 | self.dx = np.zeros(len(self.x)) |
---|
[235f514] | 801 | if self.dy is None: |
---|
[9a5097c] | 802 | self.dy = np.zeros(len(self.y)) |
---|
[a9d5684] | 803 | if self.xLabel == "log10(x)": |
---|
| 804 | for i in range(len(self.x)): |
---|
| 805 | try: |
---|
[3477478] | 806 | if self.x[i] > 0: |
---|
[a9d5684] | 807 | tempx.append(self.x[i]) |
---|
| 808 | tempdx.append(self.dx[i]) |
---|
| 809 | tempy.append(self.y[i]) |
---|
| 810 | tempdy.append(self.dy[i]) |
---|
| 811 | except: |
---|
[c155a16] | 812 | logger.error("check_data_logX: skipping point x %g", self.x[i]) |
---|
| 813 | logger.error(sys.exc_value) |
---|
[a9d5684] | 814 | self.x = tempx |
---|
| 815 | self.y = tempy |
---|
| 816 | self.dx = tempdx |
---|
| 817 | self.dy = tempdy |
---|
[3477478] | 818 | |
---|
[a9d5684] | 819 | def check_data_logY(self): |
---|
| 820 | """ |
---|
| 821 | Remove negative value in y vector |
---|
| 822 | to avoid plotting negative value of Log10 |
---|
[3477478] | 823 | |
---|
[a9d5684] | 824 | """ |
---|
| 825 | tempx = [] |
---|
| 826 | tempdx = [] |
---|
| 827 | tempy = [] |
---|
| 828 | tempdy = [] |
---|
[235f514] | 829 | if self.dx is None: |
---|
[9a5097c] | 830 | self.dx = np.zeros(len(self.x)) |
---|
[235f514] | 831 | if self.dy is None: |
---|
[9a5097c] | 832 | self.dy = np.zeros(len(self.y)) |
---|
[3477478] | 833 | if self.yLabel == "log10(y)": |
---|
[a9d5684] | 834 | for i in range(len(self.x)): |
---|
| 835 | try: |
---|
[3477478] | 836 | if self.y[i] > 0: |
---|
[a9d5684] | 837 | tempx.append(self.x[i]) |
---|
| 838 | tempdx.append(self.dx[i]) |
---|
| 839 | tempy.append(self.y[i]) |
---|
| 840 | tempdy.append(self.dy[i]) |
---|
| 841 | except: |
---|
[c155a16] | 842 | logger.error("check_data_logY: skipping point %g", self.y[i]) |
---|
| 843 | logger.error(sys.exc_value) |
---|
[3477478] | 844 | |
---|
[a9d5684] | 845 | self.x = tempx |
---|
| 846 | self.y = tempy |
---|
| 847 | self.dx = tempdx |
---|
| 848 | self.dy = tempdy |
---|
[3477478] | 849 | |
---|
[a9d5684] | 850 | def onFitRangeView(self, xmin=None, xmax=None): |
---|
| 851 | """ |
---|
| 852 | It limits View data range to plot from min to max |
---|
[3477478] | 853 | |
---|
[a9d5684] | 854 | :param xmin: the minimum value of x to plot. |
---|
| 855 | :param xmax: the maximum value of x to plot |
---|
[3477478] | 856 | |
---|
[a9d5684] | 857 | """ |
---|
| 858 | tempx = [] |
---|
| 859 | tempdx = [] |
---|
| 860 | tempy = [] |
---|
| 861 | tempdy = [] |
---|
[235f514] | 862 | if self.dx is None: |
---|
[9a5097c] | 863 | self.dx = np.zeros(len(self.x)) |
---|
[235f514] | 864 | if self.dy is None: |
---|
[9a5097c] | 865 | self.dy = np.zeros(len(self.y)) |
---|
[7432acb] | 866 | if xmin is not None and xmax is not None: |
---|
[a9d5684] | 867 | for i in range(len(self.x)): |
---|
[3477478] | 868 | if self.x[i] >= xmin and self.x[i] <= xmax: |
---|
[a9d5684] | 869 | tempx.append(self.x[i]) |
---|
| 870 | tempdx.append(self.dx[i]) |
---|
| 871 | tempy.append(self.y[i]) |
---|
| 872 | tempdy.append(self.dy[i]) |
---|
| 873 | self.x = tempx |
---|
| 874 | self.y = tempy |
---|
| 875 | self.dx = tempdx |
---|
| 876 | self.dy = tempdy |
---|
| 877 | |
---|
[3477478] | 878 | |
---|
[a9d5684] | 879 | class Data2D(Plottable): |
---|
| 880 | """ |
---|
| 881 | 2D data class for image plotting |
---|
| 882 | """ |
---|
| 883 | def __init__(self, image=None, qx_data=None, qy_data=None, |
---|
[3477478] | 884 | err_image=None, xmin=None, xmax=None, ymin=None, |
---|
| 885 | ymax=None, zmin=None, zmax=None): |
---|
[a9d5684] | 886 | """ |
---|
| 887 | Draw image |
---|
| 888 | """ |
---|
| 889 | Plottable.__init__(self) |
---|
| 890 | self.name = "Data2D" |
---|
| 891 | self.label = None |
---|
| 892 | self.data = image |
---|
| 893 | self.qx_data = qx_data |
---|
| 894 | self.qy_data = qx_data |
---|
| 895 | self.err_data = err_image |
---|
| 896 | self.source = None |
---|
| 897 | self.detector = [] |
---|
[3477478] | 898 | |
---|
| 899 | # # Units for Q-values |
---|
[a9d5684] | 900 | self.xy_unit = 'A^{-1}' |
---|
[3477478] | 901 | # # Units for I(Q) values |
---|
[a9d5684] | 902 | self.z_unit = 'cm^{-1}' |
---|
| 903 | self._zaxis = '' |
---|
| 904 | # x-axis unit and label |
---|
| 905 | self._xaxis = '\\rm{Q_{x}}' |
---|
| 906 | self._xunit = 'A^{-1}' |
---|
| 907 | # y-axis unit and label |
---|
| 908 | self._yaxis = '\\rm{Q_{y}}' |
---|
| 909 | self._yunit = 'A^{-1}' |
---|
[3477478] | 910 | |
---|
| 911 | # ## might remove that later |
---|
| 912 | # # Vector of Q-values at the center of each bin in x |
---|
[a9d5684] | 913 | self.x_bins = [] |
---|
[3477478] | 914 | # # Vector of Q-values at the center of each bin in y |
---|
[a9d5684] | 915 | self.y_bins = [] |
---|
[3477478] | 916 | |
---|
| 917 | # x and y boundaries |
---|
[a9d5684] | 918 | self.xmin = xmin |
---|
| 919 | self.xmax = xmax |
---|
| 920 | self.ymin = ymin |
---|
| 921 | self.ymax = ymax |
---|
[3477478] | 922 | |
---|
[a9d5684] | 923 | self.zmin = zmin |
---|
| 924 | self.zmax = zmax |
---|
| 925 | self.id = None |
---|
[3477478] | 926 | |
---|
[a9d5684] | 927 | def xaxis(self, label, unit): |
---|
| 928 | """ |
---|
| 929 | set x-axis |
---|
[3477478] | 930 | |
---|
[a9d5684] | 931 | :param label: x-axis label |
---|
| 932 | :param unit: x-axis unit |
---|
[3477478] | 933 | |
---|
[a9d5684] | 934 | """ |
---|
| 935 | self._xaxis = label |
---|
| 936 | self._xunit = unit |
---|
[3477478] | 937 | |
---|
[a9d5684] | 938 | def yaxis(self, label, unit): |
---|
| 939 | """ |
---|
| 940 | set y-axis |
---|
[3477478] | 941 | |
---|
[a9d5684] | 942 | :param label: y-axis label |
---|
| 943 | :param unit: y-axis unit |
---|
[3477478] | 944 | |
---|
[a9d5684] | 945 | """ |
---|
| 946 | self._yaxis = label |
---|
| 947 | self._yunit = unit |
---|
[3477478] | 948 | |
---|
[a9d5684] | 949 | def zaxis(self, label, unit): |
---|
| 950 | """ |
---|
| 951 | set z-axis |
---|
[3477478] | 952 | |
---|
[a9d5684] | 953 | :param label: z-axis label |
---|
| 954 | :param unit: z-axis unit |
---|
[3477478] | 955 | |
---|
[a9d5684] | 956 | """ |
---|
| 957 | self._zaxis = label |
---|
| 958 | self._zunit = unit |
---|
[3477478] | 959 | |
---|
[a9d5684] | 960 | def setValues(self, datainfo=None): |
---|
| 961 | """ |
---|
| 962 | Use datainfo object to initialize data2D |
---|
[3477478] | 963 | |
---|
[a9d5684] | 964 | :param datainfo: object |
---|
[3477478] | 965 | |
---|
[a9d5684] | 966 | """ |
---|
| 967 | self.image = copy.deepcopy(datainfo.data) |
---|
| 968 | self.qx_data = copy.deepcopy(datainfo.qx_data) |
---|
| 969 | self.qy_data = copy.deepcopy(datainfo.qy_data) |
---|
| 970 | self.err_image = copy.deepcopy(datainfo.err_data) |
---|
[3477478] | 971 | |
---|
[a9d5684] | 972 | self.xy_unit = datainfo.Q_unit |
---|
| 973 | self.z_unit = datainfo.I_unit |
---|
| 974 | self._zaxis = datainfo._zaxis |
---|
[3477478] | 975 | |
---|
[a9d5684] | 976 | self.xaxis(datainfo._xunit, datainfo._xaxis) |
---|
| 977 | self.yaxis(datainfo._yunit, datainfo._yaxis) |
---|
[3477478] | 978 | # x and y boundaries |
---|
[a9d5684] | 979 | self.xmin = datainfo.xmin |
---|
| 980 | self.xmax = datainfo.xmax |
---|
| 981 | self.ymin = datainfo.ymin |
---|
| 982 | self.ymax = datainfo.ymax |
---|
[3477478] | 983 | # # Vector of Q-values at the center of each bin in x |
---|
[a9d5684] | 984 | self.x_bins = datainfo.x_bins |
---|
[3477478] | 985 | # # Vector of Q-values at the center of each bin in y |
---|
[a9d5684] | 986 | self.y_bins = datainfo.y_bins |
---|
[3477478] | 987 | |
---|
[a9d5684] | 988 | def set_zrange(self, zmin=None, zmax=None): |
---|
| 989 | """ |
---|
| 990 | """ |
---|
| 991 | if zmin < zmax: |
---|
| 992 | self.zmin = zmin |
---|
| 993 | self.zmax = zmax |
---|
| 994 | else: |
---|
| 995 | raise "zmin is greater or equal to zmax " |
---|
[3477478] | 996 | |
---|
[a9d5684] | 997 | def render(self, plot, **kw): |
---|
| 998 | """ |
---|
| 999 | Renders the plottable on the graph |
---|
[3477478] | 1000 | |
---|
[a9d5684] | 1001 | """ |
---|
| 1002 | plot.image(self.data, self.qx_data, self.qy_data, |
---|
| 1003 | self.xmin, self.xmax, self.ymin, |
---|
| 1004 | self.ymax, self.zmin, self.zmax, **kw) |
---|
[3477478] | 1005 | |
---|
[a9d5684] | 1006 | def changed(self): |
---|
| 1007 | """ |
---|
| 1008 | """ |
---|
| 1009 | return False |
---|
[3477478] | 1010 | |
---|
[a9d5684] | 1011 | @classmethod |
---|
| 1012 | def labels(cls, collection): |
---|
| 1013 | """Build a label mostly unique within a collection""" |
---|
[3477478] | 1014 | label_dict = {} |
---|
[a9d5684] | 1015 | for item in collection: |
---|
| 1016 | if item.label == "Data2D": |
---|
| 1017 | item.label = item.name |
---|
[3477478] | 1018 | label_dict[item] = item.label |
---|
| 1019 | return label_dict |
---|
[a9d5684] | 1020 | |
---|
| 1021 | |
---|
| 1022 | class Data1D(Plottable): |
---|
| 1023 | """ |
---|
| 1024 | Data plottable: scatter plot of x,y with errors in x and y. |
---|
| 1025 | """ |
---|
[3477478] | 1026 | |
---|
[a9f579c] | 1027 | def __init__(self, x, y, dx=None, dy=None, lam=None, dlam=None): |
---|
[a9d5684] | 1028 | """ |
---|
| 1029 | Draw points specified by x[i],y[i] in the current color/symbol. |
---|
| 1030 | Uncertainty in x is given by dx[i], or by (xlo[i],xhi[i]) if the |
---|
| 1031 | uncertainty is asymmetric. Similarly for y uncertainty. |
---|
| 1032 | |
---|
| 1033 | The title appears on the legend. |
---|
| 1034 | The label, if it is different, appears on the status bar. |
---|
| 1035 | """ |
---|
| 1036 | Plottable.__init__(self) |
---|
| 1037 | self.name = "data" |
---|
| 1038 | self.label = "data" |
---|
| 1039 | self.x = x |
---|
| 1040 | self.y = y |
---|
[a9f579c] | 1041 | self.lam = lam |
---|
[a9d5684] | 1042 | self.dx = dx |
---|
| 1043 | self.dy = dy |
---|
[a9f579c] | 1044 | self.dlam = dlam |
---|
[a9d5684] | 1045 | self.source = None |
---|
| 1046 | self.detector = None |
---|
| 1047 | self.xaxis('', '') |
---|
| 1048 | self.yaxis('', '') |
---|
| 1049 | self.view = View(self.x, self.y, self.dx, self.dy) |
---|
| 1050 | self.symbol = 0 |
---|
| 1051 | self.custom_color = None |
---|
| 1052 | self.markersize = 5 |
---|
| 1053 | self.id = None |
---|
| 1054 | self.zorder = 1 |
---|
| 1055 | self.hide_error = False |
---|
[3477478] | 1056 | |
---|
[a9d5684] | 1057 | def render(self, plot, **kw): |
---|
| 1058 | """ |
---|
| 1059 | Renders the plottable on the graph |
---|
| 1060 | """ |
---|
| 1061 | if self.interactive == True: |
---|
| 1062 | kw['symbol'] = self.symbol |
---|
| 1063 | kw['id'] = self.id |
---|
| 1064 | kw['hide_error'] = self.hide_error |
---|
| 1065 | kw['markersize'] = self.markersize |
---|
| 1066 | plot.interactive_points(self.view.x, self.view.y, |
---|
| 1067 | dx=self.view.dx, dy=self.view.dy, |
---|
[3477478] | 1068 | name=self.name, zorder=self.zorder, **kw) |
---|
[a9d5684] | 1069 | else: |
---|
[3477478] | 1070 | kw['id'] = self.id |
---|
[a9d5684] | 1071 | kw['hide_error'] = self.hide_error |
---|
| 1072 | kw['symbol'] = self.symbol |
---|
| 1073 | kw['color'] = self.custom_color |
---|
| 1074 | kw['markersize'] = self.markersize |
---|
| 1075 | plot.points(self.view.x, self.view.y, dx=self.view.dx, |
---|
[3477478] | 1076 | dy=self.view.dy, zorder=self.zorder, |
---|
| 1077 | marker=self.symbollist[self.symbol], **kw) |
---|
| 1078 | |
---|
[a9d5684] | 1079 | def changed(self): |
---|
| 1080 | return False |
---|
| 1081 | |
---|
| 1082 | @classmethod |
---|
| 1083 | def labels(cls, collection): |
---|
| 1084 | """Build a label mostly unique within a collection""" |
---|
[3477478] | 1085 | label_dict = {} |
---|
[a9d5684] | 1086 | for item in collection: |
---|
| 1087 | if item.label == "data": |
---|
| 1088 | item.label = item.name |
---|
[3477478] | 1089 | label_dict[item] = item.label |
---|
| 1090 | return label_dict |
---|
| 1091 | |
---|
| 1092 | |
---|
[a9d5684] | 1093 | class Theory1D(Plottable): |
---|
| 1094 | """ |
---|
| 1095 | Theory plottable: line plot of x,y with confidence interval y. |
---|
| 1096 | """ |
---|
| 1097 | def __init__(self, x, y, dy=None): |
---|
| 1098 | """ |
---|
| 1099 | Draw lines specified in x[i],y[i] in the current color/symbol. |
---|
| 1100 | Confidence intervals in x are given by dx[i] or by (xlo[i],xhi[i]) |
---|
| 1101 | if the limits are asymmetric. |
---|
[3477478] | 1102 | |
---|
[a9d5684] | 1103 | The title is the name that will show up on the legend. |
---|
| 1104 | """ |
---|
| 1105 | Plottable.__init__(self) |
---|
[3477478] | 1106 | msg = "Theory1D is no longer supported, please use Data1D and change symbol.\n" |
---|
[a9d5684] | 1107 | raise DeprecationWarning, msg |
---|
[3477478] | 1108 | |
---|
[a9d5684] | 1109 | class Fit1D(Plottable): |
---|
| 1110 | """ |
---|
| 1111 | Fit plottable: composed of a data line plus a theory line. This |
---|
| 1112 | is treated like a single object from the perspective of the graph, |
---|
| 1113 | except that it will have two legend entries, one for the data and |
---|
| 1114 | one for the theory. |
---|
| 1115 | |
---|
| 1116 | The color of the data and theory will be shared. |
---|
[3477478] | 1117 | |
---|
[a9d5684] | 1118 | """ |
---|
| 1119 | def __init__(self, data=None, theory=None): |
---|
| 1120 | """ |
---|
| 1121 | """ |
---|
| 1122 | Plottable.__init__(self) |
---|
| 1123 | self.data = data |
---|
| 1124 | self.theory = theory |
---|
| 1125 | |
---|
| 1126 | def render(self, plot, **kw): |
---|
| 1127 | """ |
---|
| 1128 | """ |
---|
| 1129 | self.data.render(plot, **kw) |
---|
| 1130 | self.theory.render(plot, **kw) |
---|
| 1131 | |
---|
| 1132 | def changed(self): |
---|
| 1133 | """ |
---|
| 1134 | """ |
---|
| 1135 | return self.data.changed() or self.theory.changed() |
---|
| 1136 | |
---|
| 1137 | |
---|
| 1138 | # --------------------------------------------------------------- |
---|
| 1139 | class Text(Plottable): |
---|
| 1140 | """ |
---|
| 1141 | """ |
---|
| 1142 | def __init__(self, text=None, xpos=0.5, ypos=0.9, name='text'): |
---|
| 1143 | """ |
---|
| 1144 | Draw the user-defined text in plotter |
---|
| 1145 | We can specify the position of text |
---|
| 1146 | """ |
---|
| 1147 | Plottable.__init__(self) |
---|
| 1148 | self.name = name |
---|
| 1149 | self.text = text |
---|
| 1150 | self.xpos = xpos |
---|
| 1151 | self.ypos = ypos |
---|
[3477478] | 1152 | |
---|
[a9d5684] | 1153 | def render(self, plot, **kw): |
---|
| 1154 | """ |
---|
| 1155 | """ |
---|
| 1156 | from matplotlib import transforms |
---|
| 1157 | |
---|
| 1158 | xcoords = transforms.blended_transform_factory(plot.subplot.transAxes, |
---|
| 1159 | plot.subplot.transAxes) |
---|
| 1160 | plot.subplot.text(self.xpos, |
---|
| 1161 | self.ypos, |
---|
| 1162 | self.text, |
---|
| 1163 | label=self.name, |
---|
[3477478] | 1164 | transform=xcoords) |
---|
| 1165 | |
---|
[a9d5684] | 1166 | def setText(self, text): |
---|
| 1167 | """Set the text string.""" |
---|
| 1168 | self.text = text |
---|
| 1169 | |
---|
| 1170 | def getText(self, text): |
---|
| 1171 | """Get the text string.""" |
---|
| 1172 | return self.text |
---|
| 1173 | |
---|
| 1174 | def set_x(self, x): |
---|
| 1175 | """ |
---|
| 1176 | Set the x position of the text |
---|
| 1177 | ACCEPTS: float |
---|
| 1178 | """ |
---|
| 1179 | self.xpos = x |
---|
| 1180 | |
---|
| 1181 | def set_y(self, y): |
---|
| 1182 | """ |
---|
| 1183 | Set the y position of the text |
---|
| 1184 | ACCEPTS: float |
---|
| 1185 | """ |
---|
| 1186 | self.ypos = y |
---|
[3477478] | 1187 | |
---|
[a9d5684] | 1188 | |
---|
| 1189 | # --------------------------------------------------------------- |
---|
| 1190 | class Chisq(Plottable): |
---|
| 1191 | """ |
---|
| 1192 | Chisq plottable plots the chisq |
---|
| 1193 | """ |
---|
| 1194 | def __init__(self, chisq=None): |
---|
| 1195 | """ |
---|
| 1196 | Draw the chisq in plotter |
---|
| 1197 | We can specify the position of chisq |
---|
| 1198 | """ |
---|
| 1199 | Plottable.__init__(self) |
---|
| 1200 | self.name = "chisq" |
---|
| 1201 | self._chisq = chisq |
---|
| 1202 | self.xpos = 0.5 |
---|
| 1203 | self.ypos = 0.9 |
---|
[3477478] | 1204 | |
---|
[a9d5684] | 1205 | def render(self, plot, **kw): |
---|
| 1206 | """ |
---|
| 1207 | """ |
---|
[235f514] | 1208 | if self._chisq is None: |
---|
[a9d5684] | 1209 | chisqTxt = r'$\chi^2=$' |
---|
| 1210 | else: |
---|
| 1211 | chisqTxt = r'$\chi^2=%g$' % (float(self._chisq)) |
---|
| 1212 | |
---|
| 1213 | from matplotlib import transforms |
---|
| 1214 | |
---|
| 1215 | xcoords = transforms.blended_transform_factory(plot.subplot.transAxes, |
---|
[3477478] | 1216 | plot.subplot.transAxes) |
---|
[a9d5684] | 1217 | plot.subplot.text(self.xpos, |
---|
| 1218 | self.ypos, |
---|
| 1219 | chisqTxt, label='chisq', |
---|
[3477478] | 1220 | transform=xcoords) |
---|
| 1221 | |
---|
[a9d5684] | 1222 | def setChisq(self, chisq): |
---|
| 1223 | """ |
---|
| 1224 | Set the chisq value. |
---|
| 1225 | """ |
---|
| 1226 | self._chisq = chisq |
---|
| 1227 | |
---|
| 1228 | |
---|
| 1229 | ###################################################### |
---|
| 1230 | |
---|
| 1231 | def sample_graph(): |
---|
[9a5097c] | 1232 | import numpy as np |
---|
[3477478] | 1233 | |
---|
[a9d5684] | 1234 | # Construct a simple graph |
---|
| 1235 | if False: |
---|
[9a5097c] | 1236 | x = np.array([1, 2, 3, 4, 5, 6], 'd') |
---|
| 1237 | y = np.array([4, 5, 6, 5, 4, 5], 'd') |
---|
| 1238 | dy = np.array([0.2, 0.3, 0.1, 0.2, 0.9, 0.3]) |
---|
[a9d5684] | 1239 | else: |
---|
[9a5097c] | 1240 | x = np.linspace(0, 1., 10000) |
---|
| 1241 | y = np.sin(2 * np.pi * x * 2.8) |
---|
| 1242 | dy = np.sqrt(100 * np.abs(y)) / 100 |
---|
[a9d5684] | 1243 | data = Data1D(x, y, dy=dy) |
---|
| 1244 | data.xaxis('distance', 'm') |
---|
| 1245 | data.yaxis('time', 's') |
---|
| 1246 | graph = Graph() |
---|
| 1247 | graph.title('Walking Results') |
---|
| 1248 | graph.add(data) |
---|
| 1249 | graph.add(Theory1D(x, y, dy=dy)) |
---|
| 1250 | return graph |
---|
| 1251 | |
---|
| 1252 | |
---|
| 1253 | def demo_plotter(graph): |
---|
| 1254 | import wx |
---|
| 1255 | from pylab_plottables import Plotter |
---|
[3477478] | 1256 | # from mplplotter import Plotter |
---|
[a9d5684] | 1257 | |
---|
| 1258 | # Make a frame to show it |
---|
| 1259 | app = wx.PySimpleApp() |
---|
| 1260 | frame = wx.Frame(None, -1, 'Plottables') |
---|
| 1261 | plotter = Plotter(frame) |
---|
| 1262 | frame.Show() |
---|
| 1263 | |
---|
| 1264 | # render the graph to the pylab plotter |
---|
| 1265 | graph.render(plotter) |
---|
[3477478] | 1266 | |
---|
| 1267 | class GraphUpdate(object): |
---|
[a9d5684] | 1268 | callnum = 0 |
---|
[3477478] | 1269 | |
---|
[a9d5684] | 1270 | def __init__(self, graph, plotter): |
---|
| 1271 | self.graph, self.plotter = graph, plotter |
---|
[3477478] | 1272 | |
---|
[a9d5684] | 1273 | def __call__(self): |
---|
| 1274 | if self.graph.changed(): |
---|
| 1275 | self.graph.render(self.plotter) |
---|
| 1276 | return True |
---|
| 1277 | return False |
---|
[3477478] | 1278 | |
---|
[a9d5684] | 1279 | def onIdle(self, event): |
---|
| 1280 | self.callnum = self.callnum + 1 |
---|
[3477478] | 1281 | if self.__call__(): |
---|
[a9d5684] | 1282 | pass # event.RequestMore() |
---|
| 1283 | update = GraphUpdate(graph, plotter) |
---|
| 1284 | frame.Bind(wx.EVT_IDLE, update.onIdle) |
---|
| 1285 | app.MainLoop() |
---|