pagestate.py @ 05d167e

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.2.2ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload

Last change on this file since 05d167e was 71601312, checked in by krzywon, 8 years ago
Put the category name change in the right place.
Property mode set to `100644`
File size: 57.7 KB

Line
1	"""
2	Class that holds a fit page state
3	"""
4	# TODO: Refactor code so we don't need to use getattr/setattr
5	################################################################################
6	# This software was developed by the University of Tennessee as part of the
7	# Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
8	# project funded by the US National Science Foundation.
9	#
10	# See the license text in license.txt
11	#
12	# copyright 2009, University of Tennessee
13	################################################################################
14	import time
15	import os
16	import sys
17	import wx
18	import copy
19	import logging
20	import numpy
21	import traceback
22
23	import xml.dom.minidom
24	from xml.dom.minidom import parseString
25	from lxml import etree
26
27	from sasmodels import convert
28	import sasmodels.weights
29
30	import sas.sascalc.dataloader
31	from sas.sascalc.dataloader.readers.cansas_reader import Reader as CansasReader
32	from sas.sascalc.dataloader.readers.cansas_reader import get_content, write_node
33	from sas.sascalc.dataloader.data_info import Data2D, Collimation, Detector
34	from sas.sascalc.dataloader.data_info import Process, Aperture
35
36	# Information to read/write state as xml
37	FITTING_NODE_NAME = 'fitting_plug_in'
38	CANSAS_NS = "cansas1d/1.0"
39
40	CUSTOM_MODEL = 'Plugin Models'
41	CUSTOM_MODEL_OLD = 'Customized Models'
42
43	LIST_OF_DATA_ATTRIBUTES = [["is_data", "is_data", "bool"],
44	["group_id", "data_group_id", "string"],
45	["data_name", "data_name", "string"],
46	["data_id", "data_id", "string"],
47	["name", "name", "string"],
48	["data_name", "data_name", "string"]]
49	LIST_OF_STATE_ATTRIBUTES = [["qmin", "qmin", "float"],
50	["qmax", "qmax", "float"],
51	["npts", "npts", "float"],
52	["categorycombobox", "categorycombobox", "string"],
53	["formfactorcombobox", "formfactorcombobox",
54	"string"],
55	["structurecombobox", "structurecombobox",
56	"string"],
57	["multi_factor", "multi_factor", "float"],
58	["magnetic_on", "magnetic_on", "bool"],
59	["enable_smearer", "enable_smearer", "bool"],
60	["disable_smearer", "disable_smearer", "bool"],
61	["pinhole_smearer", "pinhole_smearer", "bool"],
62	["slit_smearer", "slit_smearer", "bool"],
63	["enable_disp", "enable_disp", "bool"],
64	["disable_disp", "disable_disp", "bool"],
65	["dI_noweight", "dI_noweight", "bool"],
66	["dI_didata", "dI_didata", "bool"],
67	["dI_sqrdata", "dI_sqrdata", "bool"],
68	["dI_idata", "dI_idata", "bool"],
69	["enable2D", "enable2D", "bool"],
70	["cb1", "cb1", "bool"],
71	["tcChi", "tcChi", "float"],
72	["smearer", "smearer", "float"],
73	["smear_type", "smear_type", "string"],
74	["dq_l", "dq_l", "float"],
75	["dq_r", "dq_r", "float"],
76	["dx_max", "dx_max", "float"],
77	["dx_min", "dx_min", "float"],
78	["dxl", "dxl", "float"],
79	["dxw", "dxw", "float"]]
80
81	LIST_OF_MODEL_ATTRIBUTES = [["values", "values"],
82	["weights", "weights"]]
83
84	DISPERSION_LIST = [["disp_obj_dict", "_disp_obj_dict", "string"]]
85
86	LIST_OF_STATE_PARAMETERS = [["parameters", "parameters"],
87	["str_parameters", "str_parameters"],
88	["orientation_parameters", "orientation_params"],
89	["dispersity_parameters",
90	"orientation_params_disp"],
91	["fixed_param", "fixed_param"],
92	["fittable_param", "fittable_param"]]
93	LIST_OF_DATA_2D_ATTR = [["xmin", "xmin", "float"],
94	["xmax", "xmax", "float"],
95	["ymin", "ymin", "float"],
96	["ymax", "ymax", "float"],
97	["_xaxis", "_xaxis", "string"],
98	["_xunit", "_xunit", "string"],
99	["_yaxis", "_yaxis", "string"],
100	["_yunit", "_yunit", "string"],
101	["_zaxis", "_zaxis", "string"],
102	["_zunit", "_zunit", "string"]]
103	LIST_OF_DATA_2D_VALUES = [["qx_data", "qx_data", "float"],
104	["qy_data", "qy_data", "float"],
105	["dqx_data", "dqx_data", "float"],
106	["dqy_data", "dqy_data", "float"],
107	["data", "data", "float"],
108	["q_data", "q_data", "float"],
109	["err_data", "err_data", "float"],
110	["mask", "mask", "bool"]]
111
112
113	def parse_entry_helper(node, item):
114	"""
115	Create a numpy list from value extrated from the node
116
117	:param node: node from each the value is stored
118	:param item: list name of three strings.the two first are name of data
119	attribute and the third one is the type of the value of that
120	attribute. type can be string, float, bool, etc.
121
122	: return: numpy array
123	"""
124	if node is not None:
125	if item[2] == "string":
126	return str(node.get(item[0]).strip())
127	elif item[2] == "bool":
128	try:
129	return node.get(item[0]).strip() == "True"
130	except Exception:
131	return None
132	else:
133	try:
134	return float(node.get(item[0]))
135	except Exception:
136	return None
137
138
139	class PageState(object):
140	"""
141	Contains information to reconstruct a page of the fitpanel.
142	"""
143	def __init__(self, parent=None, model=None, data=None):
144	"""
145	Initialize the current state
146
147	:param model: a selected model within a page
148	:param data:
149
150	"""
151	self.file = None
152	# Time of state creation
153	self.timestamp = time.time()
154	# Data member to store the dispersion object created
155	self._disp_obj_dict = {}
156	# ------------------------
157	# Data used for fitting
158	self.data = data
159	# model data
160	self.theory_data = None
161	# Is 2D
162	self.is_2D = False
163	self.images = None
164
165	# save additional information on data that dataloader.reader
166	# does not read
167	self.is_data = None
168	self.data_name = ""
169
170	if self.data is not None:
171	self.data_name = self.data.name
172	self.data_id = None
173	if self.data is not None and hasattr(self.data, "id"):
174	self.data_id = self.data.id
175	self.data_group_id = None
176	if self.data is not None and hasattr(self.data, "group_id"):
177	self.data_group_id = self.data.group_id
178
179	# reset True change the state of existing button
180	self.reset = False
181
182	# flag to allow data2D plot
183	self.enable2D = False
184	# model on which the fit would be performed
185	self.model = model
186	self.m_name = None
187	# list of process done to model
188	self.process = []
189	# fit page manager
190	self.manager = None
191	# Store the parent of this panel parent
192	# For this application fitpanel is the parent
193	self.parent = parent
194	# Event_owner is the owner of model event
195	self.event_owner = None
196	# page name
197	self.page_name = ""
198	# Contains link between model, its parameters, and panel organization
199	self.parameters = []
200	# String parameter list that can not be fitted
201	self.str_parameters = []
202	# Contains list of parameters that cannot be fitted and reference to
203	# panel objects
204	self.fixed_param = []
205	# Contains list of parameters with dispersity and reference to
206	# panel objects
207	self.fittable_param = []
208	# orientation parameters
209	self.orientation_params = []
210	# orientation parameters for gaussian dispersity
211	self.orientation_params_disp = []
212	# smearer info
213	self.smearer = None
214	self.smear_type = None
215	self.dq_l = None
216	self.dq_r = None
217	self.dx_max = None
218	self.dx_min = None
219	self.dxl = None
220	self.dxw = None
221	# list of dispersion parameters
222	self.disp_list = []
223	if self.model is not None:
224	self.disp_list = self.model.getDispParamList()
225
226	self.disp_cb_dict = {}
227	self.values = {}
228	self.weights = {}
229
230	# contains link between a model and selected parameters to fit
231	self.param_toFit = []
232	# dictionary of model type and model class
233	self.model_list_box = None
234	# save the state of the context menu
235	self.saved_states = {}
236	# save selection of combobox
237	self.formfactorcombobox = None
238	self.categorycombobox = None
239	self.structurecombobox = None
240
241	# radio box to select type of model
242	# self.shape_rbutton = False
243	# self.shape_indep_rbutton = False
244	# self.struct_rbutton = False
245	# self.plugin_rbutton = False
246	# the indice of the current selection
247	self.disp_box = 0
248	# Qrange
249	# Q range
250	self.qmin = 0.001
251	self.qmax = 0.1
252	# reset data range
253	self.qmax_x = None
254	self.qmin_x = None
255
256	self.npts = None
257	self.name = ""
258	self.multi_factor = None
259	self.magnetic_on = False
260	# enable smearering state
261	self.enable_smearer = False
262	self.disable_smearer = True
263	self.pinhole_smearer = False
264	self.slit_smearer = False
265	# weighting options
266	self.dI_noweight = False
267	self.dI_didata = True
268	self.dI_sqrdata = False
269	self.dI_idata = False
270	# disperity selection
271	self.enable_disp = False
272	self.disable_disp = True
273
274	# state of selected all check button
275	self.cb1 = False
276	# store value of chisqr
277	self.tcChi = None
278	self.version = (1,0,0)
279
280	def clone(self):
281	"""
282	Create a new copy of the current object
283	"""
284	model = None
285	if self.model is not None:
286	model = self.model.clone()
287	model.name = self.model.name
288	obj = PageState(self.parent, model=model)
289	obj.file = copy.deepcopy(self.file)
290	obj.data = copy.deepcopy(self.data)
291	if self.data is not None:
292	self.data_name = self.data.name
293	obj.data_name = self.data_name
294	obj.is_data = self.is_data
295	obj.model_list_box = copy.deepcopy(self.model_list_box)
296
297	obj.categorycombobox = self.categorycombobox
298	obj.formfactorcombobox = self.formfactorcombobox
299	obj.structurecombobox = self.structurecombobox
300
301	# obj.shape_rbutton = self.shape_rbutton
302	# obj.shape_indep_rbutton = self.shape_indep_rbutton
303	# obj.struct_rbutton = self.struct_rbutton
304	# obj.plugin_rbutton = self.plugin_rbutton
305
306	obj.manager = self.manager
307	obj.event_owner = self.event_owner
308	obj.disp_list = copy.deepcopy(self.disp_list)
309
310	obj.enable2D = copy.deepcopy(self.enable2D)
311	obj.parameters = copy.deepcopy(self.parameters)
312	obj.str_parameters = copy.deepcopy(self.str_parameters)
313	obj.fixed_param = copy.deepcopy(self.fixed_param)
314	obj.fittable_param = copy.deepcopy(self.fittable_param)
315	obj.orientation_params = copy.deepcopy(self.orientation_params)
316	obj.orientation_params_disp = \
317	copy.deepcopy(self.orientation_params_disp)
318	obj.enable_disp = copy.deepcopy(self.enable_disp)
319	obj.disable_disp = copy.deepcopy(self.disable_disp)
320	obj.tcChi = self.tcChi
321
322	if len(self._disp_obj_dict) > 0:
323	for k, v in self._disp_obj_dict.iteritems():
324	obj._disp_obj_dict[k] = v
325	if len(self.disp_cb_dict) > 0:
326	for k, v in self.disp_cb_dict.iteritems():
327	obj.disp_cb_dict[k] = v
328	if len(self.values) > 0:
329	for k, v in self.values.iteritems():
330	obj.values[k] = v
331	if len(self.weights) > 0:
332	for k, v in self.weights.iteritems():
333	obj.weights[k] = v
334	obj.enable_smearer = copy.deepcopy(self.enable_smearer)
335	obj.disable_smearer = copy.deepcopy(self.disable_smearer)
336	obj.pinhole_smearer = copy.deepcopy(self.pinhole_smearer)
337	obj.slit_smearer = copy.deepcopy(self.slit_smearer)
338	obj.smear_type = copy.deepcopy(self.smear_type)
339	obj.dI_noweight = copy.deepcopy(self.dI_noweight)
340	obj.dI_didata = copy.deepcopy(self.dI_didata)
341	obj.dI_sqrdata = copy.deepcopy(self.dI_sqrdata)
342	obj.dI_idata = copy.deepcopy(self.dI_idata)
343	obj.dq_l = copy.deepcopy(self.dq_l)
344	obj.dq_r = copy.deepcopy(self.dq_r)
345	obj.dx_max = copy.deepcopy(self.dx_max)
346	obj.dx_min = copy.deepcopy(self.dx_min)
347	obj.dxl = copy.deepcopy(self.dxl)
348	obj.dxw = copy.deepcopy(self.dxw)
349	obj.disp_box = copy.deepcopy(self.disp_box)
350	obj.qmin = copy.deepcopy(self.qmin)
351	obj.qmax = copy.deepcopy(self.qmax)
352	obj.multi_factor = self.multi_factor
353	obj.magnetic_on = self.magnetic_on
354	obj.npts = copy.deepcopy(self.npts)
355	obj.cb1 = copy.deepcopy(self.cb1)
356	obj.smearer = copy.deepcopy(self.smearer)
357	obj.version = copy.deepcopy(self.version)
358
359	for name, state in self.saved_states.iteritems():
360	copy_name = copy.deepcopy(name)
361	copy_state = state.clone()
362	obj.saved_states[copy_name] = copy_state
363	return obj
364
365	def _old_first_model(self):
366	"""
367	Handle save states from 4.0.1 and before where the first item in the
368	selection boxes of category, formfactor and structurefactor were not
369	saved.
370	:return: None
371	"""
372	if self.categorycombobox == CUSTOM_MODEL_OLD:
373	self.categorycombobox = CUSTOM_MODEL
374	if self.formfactorcombobox == '':
375	FIRST_FORM = {
376	'Shapes' : 'BCCrystalModel',
377	'Uncategorized' : 'LineModel',
378	'StructureFactor' : 'HardsphereStructure',
379	'Ellipsoid' : 'core_shell_ellipsoid',
380	'Lamellae' : 'lamellar',
381	'Paracrystal' : 'bcc_paracrystal',
382	'Parallelepiped' : 'core_shell_parallelepiped',
383	'Shape Independent' : 'be_polyelectrolyte',
384	'Sphere' : 'adsorbed_layer',
385	'Structure Factor' : 'hardsphere',
386	CUSTOM_MODEL : ''
387	}
388	if self.categorycombobox == '':
389	if len(self.parameters) == 3:
390	self.categorycombobox = "Shape-Independent"
391	self.formfactorcombobox = 'PowerLawAbsModel'
392	elif len(self.parameters) == 9:
393	self.categorycombobox = 'Cylinder'
394	self.formfactorcombobox = 'barbell'
395	else:
396	msg = "Save state does not have enough information to load"
397	msg += " the all of the data."
398	logging.warning(msg=msg)
399	else:
400	self.formfactorcombobox = FIRST_FORM[self.categorycombobox]
401
402	@staticmethod
403	def param_remap_to_sasmodels_convert(params, is_string=False):
404	"""
405	Remaps the parameters for sasmodels conversion
406
407	:param params: list of parameters (likely self.parameters)
408	:return: remapped dictionary of parameters
409	"""
410	p = dict()
411	for fittable, name, value, _, uncert, lower, upper, units in params:
412	if not value:
413	value = numpy.nan
414	if not uncert or uncert[1] == '' or uncert[1] == 'None':
415	uncert[0] = False
416	uncert[1] = numpy.nan
417	if not upper or upper[1] == '' or upper[1] == 'None':
418	upper[0] = False
419	upper[1] = numpy.nan
420	if not lower or lower[1] == '' or lower[1] == 'None':
421	lower[0] = False
422	lower[1] = numpy.nan
423	if is_string:
424	p[name] = str(value)
425	else:
426	p[name] = float(value)
427	p[name + ".fittable"] = bool(fittable)
428	p[name + ".std"] = float(uncert[1])
429	p[name + ".upper"] = float(upper[1])
430	p[name + ".lower"] = float(lower[1])
431	p[name + ".units"] = units
432	return p
433
434	@staticmethod
435	def param_remap_from_sasmodels_convert(params):
436	"""
437	Converts {name : value} map back to [] param list
438	:param params: parameter map returned from sasmodels
439	:return: None
440	"""
441	p_map = []
442	for name, info in params.iteritems():
443	if ".fittable" in name or ".std" in name or ".upper" in name or \
444	".lower" in name or ".units" in name:
445	pass
446	else:
447	fittable = params.get(name + ".fittable", True)
448	std = params.get(name + ".std", '0.0')
449	upper = params.get(name + ".upper", 'inf')
450	lower = params.get(name + ".lower", '-inf')
451	units = params.get(name + ".units")
452	if std is not None and std is not numpy.nan:
453	std = [True, str(std)]
454	else:
455	std = [False, '']
456	if lower is not None and lower is not numpy.nan:
457	lower = [True, str(lower)]
458	else:
459	lower = [True, '-inf']
460	if upper is not None and upper is not numpy.nan:
461	upper = [True, str(upper)]
462	else:
463	upper = [True, 'inf']
464	param_list = [bool(fittable), str(name), str(info),
465	"+/-", std, lower, upper, str(units)]
466	p_map.append(param_list)
467	return p_map
468
469	def _convert_to_sasmodels(self):
470	"""
471	Convert parameters to a form usable by sasmodels converter
472
473	:return: None
474	"""
475	# Create conversion dictionary to send to sasmodels
476	self._old_first_model()
477	p = self.param_remap_to_sasmodels_convert(self.parameters)
478	structurefactor, params = convert.convert_model(self.structurecombobox,
479	p, False, self.version)
480	formfactor, params = convert.convert_model(self.formfactorcombobox,
481	params, False, self.version)
482	if len(self.str_parameters) > 0:
483	str_pars = self.param_remap_to_sasmodels_convert(
484	self.str_parameters, True)
485	formfactor, str_params = convert.convert_model(
486	self.formfactorcombobox, str_pars, False, self.version)
487	for key, value in str_params.iteritems():
488	params[key] = value
489
490	if self.formfactorcombobox == 'SphericalSLDModel':
491	self.multi_factor += 1
492	self.formfactorcombobox = formfactor
493	self.structurecombobox = structurefactor
494	self.parameters = []
495	self.parameters = self.param_remap_from_sasmodels_convert(params)
496
497	def _repr_helper(self, list, rep):
498	"""
499	Helper method to print a state
500	"""
501	for item in list:
502	rep += "parameter name: %s \n" % str(item[1])
503	rep += "value: %s\n" % str(item[2])
504	rep += "selected: %s\n" % str(item[0])
505	rep += "error displayed : %s \n" % str(item[4][0])
506	rep += "error value:%s \n" % str(item[4][1])
507	rep += "minimum displayed : %s \n" % str(item[5][0])
508	rep += "minimum value : %s \n" % str(item[5][1])
509	rep += "maximum displayed : %s \n" % str(item[6][0])
510	rep += "maximum value : %s \n" % str(item[6][1])
511	rep += "parameter unit: %s\n\n" % str(item[7])
512	return rep
513
514	def __repr__(self):
515	"""
516	output string for printing
517	"""
518	rep = "\nState name: %s\n" % self.file
519	t = time.localtime(self.timestamp)
520	time_str = time.strftime("%b %d %Y %H;%M;%S ", t)
521
522	rep += "State created: %s\n" % time_str
523	rep += "State form factor combobox selection: %s\n" % \
524	self.formfactorcombobox
525	rep += "State structure factor combobox selection: %s\n" % \
526	self.structurecombobox
527	rep += "is data : %s\n" % self.is_data
528	rep += "data's name : %s\n" % self.data_name
529	rep += "data's id : %s\n" % self.data_id
530	if self.model is not None:
531	m_name = self.model.__class__.__name__
532	if m_name == 'Model':
533	m_name = self.m_name
534	rep += "model name : %s\n" % m_name
535	else:
536	rep += "model name : None\n"
537	rep += "multi_factor : %s\n" % str(self.multi_factor)
538	rep += "magnetic_on : %s\n" % str(self.magnetic_on)
539	rep += "model type (Category) selected: %s\n" % self.categorycombobox
540	rep += "data : %s\n" % str(self.data)
541	rep += "Plotting Range: min: %s, max: %s, steps: %s\n" % \
542	(str(self.qmin), str(self.qmax), str(self.npts))
543	rep += "Dispersion selection : %s\n" % str(self.disp_box)
544	rep += "Smearing enable : %s\n" % str(self.enable_smearer)
545	rep += "Smearing disable : %s\n" % str(self.disable_smearer)
546	rep += "Pinhole smearer enable : %s\n" % str(self.pinhole_smearer)
547	rep += "Slit smearer enable : %s\n" % str(self.slit_smearer)
548	rep += "Dispersity enable : %s\n" % str(self.enable_disp)
549	rep += "Dispersity disable : %s\n" % str(self.disable_disp)
550	rep += "Slit smearer enable: %s\n" % str(self.slit_smearer)
551
552	rep += "dI_noweight : %s\n" % str(self.dI_noweight)
553	rep += "dI_didata : %s\n" % str(self.dI_didata)
554	rep += "dI_sqrdata : %s\n" % str(self.dI_sqrdata)
555	rep += "dI_idata : %s\n" % str(self.dI_idata)
556
557	rep += "2D enable : %s\n" % str(self.enable2D)
558	rep += "All parameters checkbox selected: %s\n" % self.cb1
559	rep += "Value of Chisqr : %s\n" % str(self.tcChi)
560	rep += "Smear object : %s\n" % self.smearer
561	rep += "Smear type : %s\n" % self.smear_type
562	rep += "dq_l : %s\n" % self.dq_l
563	rep += "dq_r : %s\n" % self.dq_r
564	rep += "dx_max : %s\n" % str(self.dx_max)
565	rep += "dx_min : %s\n" % str(self.dx_min)
566	rep += "dxl : %s\n" % str(self.dxl)
567	rep += "dxw : %s\n" % str(self.dxw)
568	rep += "model : %s\n\n" % str(self.model)
569	temp_parameters = []
570	temp_fittable_param = []
571	if self.data.__class__.__name__ == "Data2D":
572	self.is_2D = True
573	else:
574	self.is_2D = False
575	if self.data is not None:
576	if not self.is_2D:
577	for item in self.parameters:
578	if item not in self.orientation_params:
579	temp_parameters.append(item)
580	for item in self.fittable_param:
581	if item not in self.orientation_params_disp:
582	temp_fittable_param.append(item)
583	else:
584	temp_parameters = self.parameters
585	temp_fittable_param = self.fittable_param
586
587	rep += "number parameters(self.parameters): %s\n" % \
588	len(temp_parameters)
589	rep = self._repr_helper(list=temp_parameters, rep=rep)
590	rep += "number str_parameters(self.str_parameters): %s\n" % \
591	len(self.str_parameters)
592	rep = self._repr_helper(list=self.str_parameters, rep=rep)
593	rep += "number fittable_param(self.fittable_param): %s\n" % \
594	len(temp_fittable_param)
595	rep = self._repr_helper(list=temp_fittable_param, rep=rep)
596	return rep
597
598	def set_report_string(self):
599	"""
600	Get the values (strings) from __str__ for report
601	"""
602	# Dictionary of the report strings
603	repo_time = ""
604	model_name = ""
605	title = ""
606	title_name = ""
607	file_name = ""
608	param_string = ""
609	paramval_string = ""
610	chi2_string = ""
611	q_range = ""
612	strings = self.__repr__()
613	lines = strings.split('\n')
614
615	# get all string values from __str__()
616	for line in lines:
617	value = ""
618	content = line.split(":")
619	name = content[0]
620	try:
621	value = content[1]
622	except Exception:
623	msg = "Report string expected 'name: value' but got %r" % line
624	logging.error(msg)
625	if name.count("State created"):
626	repo_time = "" + value
627	if name.count("parameter name"):
628	val_name = value.split(".")
629	if len(val_name) > 1:
630	if val_name[1].count("width"):
631	param_string += value + ','
632	else:
633	continue
634	else:
635	param_string += value + ','
636	if name == "value":
637	param_string += value + ','
638	fixed_parameter = False
639	if name == "selected":
640	if value == u' False':
641	fixed_parameter = True
642	if name == "error value":
643	if fixed_parameter:
644	param_string += '(fixed),'
645	else:
646	param_string += value + ','
647	if name == "parameter unit":
648	param_string += value + ':'
649	if name == "Value of Chisqr ":
650	chi2 = ("Chi2/Npts = " + value)
651	chi2_string = CENTRE % chi2
652	if name == "Title":
653	if len(value.strip()) == 0:
654	continue
655	title = value + " [" + repo_time + "]"
656	title_name = HEADER % title
657	if name == "data ":
658	try:
659	file_value = ("File name:" + content[2])
660	file_name = CENTRE % file_value
661	if len(title) == 0:
662	title = content[2] + " [" + repo_time + "]"
663	title_name = HEADER % title
664	except Exception:
665	msg = "While parsing 'data: ...'\n"
666	logging.error(msg + traceback.format_exc())
667	if name == "model name ":
668	try:
669	modelname = "Model name:" + content[1]
670	except:
671	modelname = "Model name:" + " NAN"
672	model_name = CENTRE % modelname
673
674	if name == "Plotting Range":
675	try:
676	q_range = content[1] + " = " + content[2] \
677	+ " = " + content[3].split(",")[0]
678	q_name = ("Q Range: " + q_range)
679	q_range = CENTRE % q_name
680	except Exception:
681	msg = "While parsing 'Plotting Range: ...'\n"
682	logging.error(msg + traceback.format_exc())
683	paramval = ""
684	for lines in param_string.split(":"):
685	line = lines.split(",")
686	if len(lines) > 0:
687	param = line[0]
688	param += " = " + line[1]
689	if len(line[2].split()) > 0 and not line[2].count("None"):
690	param += " +- " + line[2]
691	if len(line[3].split()) > 0 and not line[3].count("None"):
692	param += " " + line[3]
693	if not paramval.count(param):
694	paramval += param + "\n"
695	paramval_string += CENTRE % param + "\n"
696
697	text_string = "\n\n\n%s\n\n%s\n%s\n%s\n\n%s" % \
698	(title, file, q_name, chi2, paramval)
699
700	title_name = self._check_html_format(title_name)
701	file_name = self._check_html_format(file_name)
702	title = self._check_html_format(title)
703
704	html_string = title_name + "\n" + file_name + \
705	"\n" + model_name + \
706	"\n" + q_range + \
707	"\n" + chi2_string + \
708	"\n" + ELINE + \
709	"\n" + paramval_string + \
710	"\n" + ELINE + \
711	"\n" + FEET_1 % title + \
712	"\n" + FEET_2
713
714	return html_string, text_string, title
715
716	def _check_html_format(self, name):
717	"""
718	Check string '%' for html format
719	"""
720	if name.count('%'):
721	name = name.replace('%', '&#37')
722
723	return name
724
725	def report(self, figs=None, canvases=None):
726	"""
727	Invoke report dialog panel
728
729	: param figs: list of pylab figures [list]
730	"""
731	from sas.sasgui.perspectives.fitting.report_dialog import ReportDialog
732	# get the strings for report
733	html_str, text_str, title = self.set_report_string()
734	# Allow 2 figures to append
735	if len(figs) == 1:
736	add_str = FEET_3
737	elif len(figs) == 2:
738	add_str = ELINE
739	add_str += FEET_2 % ("%s")
740	add_str += ELINE
741	add_str += FEET_3
742	elif len(figs) > 2:
743	add_str = ELINE
744	add_str += FEET_2 % ("%s")
745	add_str += ELINE
746	add_str += FEET_2 % ("%s")
747	add_str += ELINE
748	add_str += FEET_3
749	else:
750	add_str = ""
751
752	# final report html strings
753	report_str = html_str % ("%s") + add_str
754
755	# make plot image
756	images = self.set_plot_state(figs, canvases)
757	report_list = [report_str, text_str, images]
758	dialog = ReportDialog(report_list, None, wx.ID_ANY, "")
759	dialog.Show()
760
761	def _to_xml_helper(self, thelist, element, newdoc):
762	"""
763	Helper method to create xml file for saving state
764	"""
765	for item in thelist:
766	sub_element = newdoc.createElement('parameter')
767	sub_element.setAttribute('name', str(item[1]))
768	sub_element.setAttribute('value', str(item[2]))
769	sub_element.setAttribute('selected_to_fit', str(item[0]))
770	sub_element.setAttribute('error_displayed', str(item[4][0]))
771	sub_element.setAttribute('error_value', str(item[4][1]))
772	sub_element.setAttribute('minimum_displayed', str(item[5][0]))
773	sub_element.setAttribute('minimum_value', str(item[5][1]))
774	sub_element.setAttribute('maximum_displayed', str(item[6][0]))
775	sub_element.setAttribute('maximum_value', str(item[6][1]))
776	sub_element.setAttribute('unit', str(item[7]))
777	element.appendChild(sub_element)
778
779	def to_xml(self, file="fitting_state.fitv", doc=None,
780	entry_node=None, batch_fit_state=None):
781	"""
782	Writes the state of the fit panel to file, as XML.
783
784	Compatible with standalone writing, or appending to an
785	already existing XML document. In that case, the XML document is
786	required. An optional entry node in the XML document may also be given.
787
788	:param file: file to write to
789	:param doc: XML document object [optional]
790	:param entry_node: XML node within the XML document at which we
791	will append the data [optional]
792	:param batch_fit_state: simultaneous fit state
793	"""
794	from xml.dom.minidom import getDOMImplementation
795
796	# Check whether we have to write a standalone XML file
797	if doc is None:
798	impl = getDOMImplementation()
799	doc_type = impl.createDocumentType(FITTING_NODE_NAME, "1.0", "1.0")
800	newdoc = impl.createDocument(None, FITTING_NODE_NAME, doc_type)
801	top_element = newdoc.documentElement
802	else:
803	# We are appending to an existing document
804	newdoc = doc
805	try:
806	top_element = newdoc.createElement(FITTING_NODE_NAME)
807	except:
808	string = etree.tostring(doc, pretty_print=True)
809	newdoc = parseString(string)
810	top_element = newdoc.createElement(FITTING_NODE_NAME)
811	if entry_node is None:
812	newdoc.documentElement.appendChild(top_element)
813	else:
814	try:
815	entry_node.appendChild(top_element)
816	except:
817	node_name = entry_node.tag
818	node_list = newdoc.getElementsByTagName(node_name)
819	entry_node = node_list.item(0)
820	entry_node.appendChild(top_element)
821
822	attr = newdoc.createAttribute("version")
823	import sasview
824	attr.nodeValue = sasview.__version__
825	# attr.nodeValue = '1.0'
826	top_element.setAttributeNode(attr)
827
828	# File name
829	element = newdoc.createElement("filename")
830	if self.file is not None:
831	element.appendChild(newdoc.createTextNode(str(self.file)))
832	else:
833	element.appendChild(newdoc.createTextNode(str(file)))
834	top_element.appendChild(element)
835
836	element = newdoc.createElement("timestamp")
837	element.appendChild(newdoc.createTextNode(time.ctime(self.timestamp)))
838	attr = newdoc.createAttribute("epoch")
839	attr.nodeValue = str(self.timestamp)
840	element.setAttributeNode(attr)
841	top_element.appendChild(element)
842
843	# Inputs
844	inputs = newdoc.createElement("Attributes")
845	top_element.appendChild(inputs)
846
847	if self.data is not None and hasattr(self.data, "group_id"):
848	self.data_group_id = self.data.group_id
849	if self.data is not None and hasattr(self.data, "is_data"):
850	self.is_data = self.data.is_data
851	if self.data is not None:
852	self.data_name = self.data.name
853	if self.data is not None and hasattr(self.data, "id"):
854	self.data_id = self.data.id
855
856	for item in LIST_OF_DATA_ATTRIBUTES:
857	element = newdoc.createElement(item[0])
858	element.setAttribute(item[0], str(getattr(self, item[1])))
859	inputs.appendChild(element)
860
861	for item in LIST_OF_STATE_ATTRIBUTES:
862	element = newdoc.createElement(item[0])
863	element.setAttribute(item[0], str(getattr(self, item[1])))
864	inputs.appendChild(element)
865
866	# For self.values ={ disp_param_name: [vals,...],...}
867	# and for self.weights ={ disp_param_name: [weights,...],...}
868	for item in LIST_OF_MODEL_ATTRIBUTES:
869	element = newdoc.createElement(item[0])
870	value_list = getattr(self, item[1])
871	for key, value in value_list.iteritems():
872	sub_element = newdoc.createElement(key)
873	sub_element.setAttribute('name', str(key))
874	for val in value:
875	sub_element.appendChild(newdoc.createTextNode(str(val)))
876
877	element.appendChild(sub_element)
878	inputs.appendChild(element)
879
880	# Create doc for the dictionary of self._disp_obj_dic
881	for tagname, varname, tagtype in DISPERSION_LIST:
882	element = newdoc.createElement(tagname)
883	value_list = getattr(self, varname)
884	for key, value in value_list.iteritems():
885	sub_element = newdoc.createElement(key)
886	sub_element.setAttribute('name', str(key))
887	sub_element.setAttribute('value', str(value))
888	element.appendChild(sub_element)
889	inputs.appendChild(element)
890
891	for item in LIST_OF_STATE_PARAMETERS:
892	element = newdoc.createElement(item[0])
893	self._to_xml_helper(thelist=getattr(self, item[1]),
894	element=element, newdoc=newdoc)
895	inputs.appendChild(element)
896
897	# Combined and Simultaneous Fit Parameters
898	if batch_fit_state is not None:
899	batch_combo = newdoc.createElement('simultaneous_fit')
900	top_element.appendChild(batch_combo)
901
902	# Simultaneous Fit Number For Linking Later
903	element = newdoc.createElement('sim_fit_number')
904	element.setAttribute('fit_number', str(batch_fit_state.fit_page_no))
905	batch_combo.appendChild(element)
906
907	# Save constraints
908	constraints = newdoc.createElement('constraints')
909	batch_combo.appendChild(constraints)
910	for constraint in batch_fit_state.constraints_list:
911	if constraint.model_cbox.GetValue() != "":
912	# model_cbox, param_cbox, egal_txt, constraint,
913	# btRemove, sizer
914	doc_cons = newdoc.createElement('constraint')
915	doc_cons.setAttribute('model_cbox',
916	str(constraint.model_cbox.GetValue()))
917	doc_cons.setAttribute('param_cbox',
918	str(constraint.param_cbox.GetValue()))
919	doc_cons.setAttribute('egal_txt',
920	str(constraint.egal_txt.GetLabel()))
921	doc_cons.setAttribute('constraint',
922	str(constraint.constraint.GetValue()))
923	constraints.appendChild(doc_cons)
924
925	# Save all models
926	models = newdoc.createElement('model_list')
927	batch_combo.appendChild(models)
928	for model in batch_fit_state.model_list:
929	doc_model = newdoc.createElement('model_list_item')
930	doc_model.setAttribute('checked', str(model[0].GetValue()))
931	keys = model[1].keys()
932	doc_model.setAttribute('name', str(keys[0]))
933	values = model[1].get(keys[0])
934	doc_model.setAttribute('fit_number', str(model[2]))
935	doc_model.setAttribute('fit_page_source', str(model[3]))
936	doc_model.setAttribute('model_name', str(values.model.id))
937	models.appendChild(doc_model)
938
939	# Select All Checkbox
940	element = newdoc.createElement('select_all')
941	if batch_fit_state.select_all:
942	element.setAttribute('checked', 'True')
943	else:
944	element.setAttribute('checked', 'False')
945	batch_combo.appendChild(element)
946
947	# Save the file
948	if doc is None:
949	fd = open(file, 'w')
950	fd.write(newdoc.toprettyxml())
951	fd.close()
952	return None
953	else:
954	return newdoc
955
956	def _from_xml_helper(self, node, list):
957	"""
958	Helper function to write state to xml
959	"""
960	for item in node:
961	try:
962	name = item.get('name')
963	except:
964	name = None
965	try:
966	value = item.get('value')
967	except:
968	value = None
969	try:
970	selected_to_fit = (item.get('selected_to_fit') == "True")
971	except:
972	selected_to_fit = None
973	try:
974	error_displayed = (item.get('error_displayed') == "True")
975	except:
976	error_displayed = None
977	try:
978	error_value = item.get('error_value')
979	except:
980	error_value = None
981	try:
982	minimum_displayed = (item.get('minimum_displayed') == "True")
983	except:
984	minimum_displayed = None
985	try:
986	minimum_value = item.get('minimum_value')
987	except:
988	minimum_value = None
989	try:
990	maximum_displayed = (item.get('maximum_displayed') == "True")
991	except:
992	maximum_displayed = None
993	try:
994	maximum_value = item.get('maximum_value')
995	except:
996	maximum_value = None
997	try:
998	unit = item.get('unit')
999	except:
1000	unit = None
1001	list.append([selected_to_fit, name, value, "+/-",
1002	[error_displayed, error_value],
1003	[minimum_displayed, minimum_value],
1004	[maximum_displayed, maximum_value], unit])
1005
1006	def from_xml(self, file=None, node=None):
1007	"""
1008	Load fitting state from a file
1009
1010	:param file: .fitv file
1011	:param node: node of a XML document to read from
1012	"""
1013	if file is not None:
1014	msg = "PageState no longer supports non-CanSAS"
1015	msg += " format for fitting files"
1016	raise RuntimeError, msg
1017
1018	if node.get('version'):
1019	# Get the version for model conversion purposes
1020	self.version = tuple(int(e) for e in
1021	str.split(node.get('version'), "."))
1022	# The tuple must be at least 3 items long
1023	while len(self.version) < 3:
1024	ver_list = list(self.version)
1025	ver_list.append(0)
1026	self.version = tuple(ver_list)
1027
1028	# Get file name
1029	entry = get_content('ns:filename', node)
1030	if entry is not None:
1031	self.file = entry.text.strip()
1032
1033	# Get time stamp
1034	entry = get_content('ns:timestamp', node)
1035	if entry is not None and entry.get('epoch'):
1036	try:
1037	self.timestamp = float(entry.get('epoch'))
1038	except:
1039	msg = "PageState.fromXML: Could not"
1040	msg += " read timestamp\n %s" % sys.exc_value
1041	logging.error(msg)
1042
1043	if entry is not None:
1044	# Parse fitting attributes
1045	entry = get_content('ns:Attributes', node)
1046	for item in LIST_OF_DATA_ATTRIBUTES:
1047	node = get_content('ns:%s' % item[0], entry)
1048	setattr(self, item[0], parse_entry_helper(node, item))
1049
1050	for item in LIST_OF_STATE_ATTRIBUTES:
1051	node = get_content('ns:%s' % item[0], entry)
1052	setattr(self, item[0], parse_entry_helper(node, item))
1053
1054	for item in LIST_OF_STATE_PARAMETERS:
1055	node = get_content("ns:%s" % item[0], entry)
1056	self._from_xml_helper(node=node,
1057	list=getattr(self, item[1]))
1058
1059	# Recover _disp_obj_dict from xml file
1060	self._disp_obj_dict = {}
1061	for tagname, varname, tagtype in DISPERSION_LIST:
1062	node = get_content("ns:%s" % tagname, entry)
1063	for attr in node:
1064	parameter = str(attr.get('name'))
1065	value = attr.get('value')
1066	if value.startswith("<"):
1067	try:
1068	# <path.to.NamedDistribution object/instance...>
1069	cls_name = value[1:].split()[0].split('.')[-1]
1070	cls = getattr(sasmodels.weights, cls_name)
1071	value = cls.type
1072	except Exception:
1073	base = "unable to load distribution %r for %s"
1074	logging.error(base % (value, parameter))
1075	continue
1076	_disp_obj_dict = getattr(self, varname)
1077	_disp_obj_dict[parameter] = value
1078
1079	# get self.values and self.weights dic. if exists
1080	for tagname, varname in LIST_OF_MODEL_ATTRIBUTES:
1081	node = get_content("ns:%s" % tagname, entry)
1082	dic = {}
1083	value_list = []
1084	for par in node:
1085	name = par.get('name')
1086	values = par.text.split()
1087	# Get lines only with numbers
1088	for line in values:
1089	try:
1090	val = float(line)
1091	value_list.append(val)
1092	except Exception:
1093	# pass if line is empty (it happens)
1094	msg = ("Error reading %r from %s %s\n"
1095	% (line, tagname, name))
1096	logging.error(msg + traceback.format_exc())
1097	dic[name] = numpy.array(value_list)
1098	setattr(self, varname, dic)
1099
1100	def set_plot_state(self, figs, canvases):
1101	"""
1102	Build image state that wx.html understand
1103	by plotting, putting it into wx.FileSystem image object
1104
1105	"""
1106	images = []
1107
1108	# Reset memory
1109	self.imgRAM = None
1110	wx.MemoryFSHandler()
1111
1112	# For no figures in the list, prepare empty plot
1113	if figs is None or len(figs) == 0:
1114	figs = [None]
1115
1116	# Loop over the list of figures
1117	# use wx.MemoryFSHandler
1118	self.imgRAM = wx.MemoryFSHandler()
1119	for fig in figs:
1120	if fig is not None:
1121	ind = figs.index(fig)
1122	canvas = canvases[ind]
1123
1124	# store the image in wx.FileSystem Object
1125	wx.FileSystem.AddHandler(wx.MemoryFSHandler())
1126
1127	# index of the fig
1128	ind = figs.index(fig)
1129
1130	# AddFile, image can be retrieved with 'memory:filename'
1131	self.imgRAM.AddFile('img_fit%s.png' % ind,
1132	canvas.bitmap, wx.BITMAP_TYPE_PNG)
1133
1134	# append figs
1135	images.append(fig)
1136
1137	return images
1138
1139
1140	class Reader(CansasReader):
1141	"""
1142	Class to load a .fitv fitting file
1143	"""
1144	# File type
1145	type_name = "Fitting"
1146
1147	# Wildcards
1148	type = ["Fitting files (.fitv)\|.fitv"
1149	"SASView file (.svs)\|.svs"]
1150	# List of allowed extensions
1151	ext = ['.fitv', '.FITV', '.svs', 'SVS']
1152
1153	def __init__(self, call_back=None, cansas=True):
1154	CansasReader.__init__(self)
1155	"""
1156	Initialize the call-back method to be called
1157	after we load a file
1158
1159	:param call_back: call-back method
1160	:param cansas: True = files will be written/read in CanSAS format
1161	False = write CanSAS format
1162
1163	"""
1164	# Call back method to be executed after a file is read
1165	self.call_back = call_back
1166	# CanSAS format flag
1167	self.cansas = cansas
1168	self.state = None
1169	# batch fitting params for saving
1170	self.batchfit_params = []
1171
1172	def get_state(self):
1173	return self.state
1174
1175	def read(self, path):
1176	"""
1177	Load a new P(r) inversion state from file
1178
1179	:param path: file path
1180
1181	"""
1182	if self.cansas:
1183	return self._read_cansas(path)
1184
1185	def _parse_state(self, entry):
1186	"""
1187	Read a fit result from an XML node
1188
1189	:param entry: XML node to read from
1190	:return: PageState object
1191	"""
1192	# Create an empty state
1193	state = None
1194	# Locate the P(r) node
1195	try:
1196	nodes = entry.xpath('ns:%s' % FITTING_NODE_NAME,
1197	namespaces={'ns': CANSAS_NS})
1198	if nodes:
1199	# Create an empty state
1200	state = PageState()
1201	state.from_xml(node=nodes[0])
1202
1203	except:
1204	logging.info("XML document does not contain fitting information.\n"
1205	+ traceback.format_exc())
1206
1207	return state
1208
1209	def _parse_simfit_state(self, entry):
1210	"""
1211	Parses the saved data for a simultaneous fit
1212	:param entry: XML object to read from
1213	:return: XML object for a simultaneous fit or None
1214	"""
1215	nodes = entry.xpath('ns:%s' % FITTING_NODE_NAME,
1216	namespaces={'ns': CANSAS_NS})
1217	if nodes:
1218	simfitstate = nodes[0].xpath('ns:simultaneous_fit',
1219	namespaces={'ns': CANSAS_NS})
1220	if simfitstate:
1221	from simfitpage import SimFitPageState
1222	sim_fit_state = SimFitPageState()
1223	simfitstate_0 = simfitstate[0]
1224	all = simfitstate_0.xpath('ns:select_all',
1225	namespaces={'ns': CANSAS_NS})
1226	atts = all[0].attrib
1227	checked = atts.get('checked')
1228	sim_fit_state.select_all = bool(checked)
1229	model_list = simfitstate_0.xpath('ns:model_list',
1230	namespaces={'ns': CANSAS_NS})
1231	model_list_items = model_list[0].xpath('ns:model_list_item',
1232	namespaces={'ns':
1233	CANSAS_NS})
1234	for model in model_list_items:
1235	attrs = model.attrib
1236	sim_fit_state.model_list.append(attrs)
1237
1238	constraints = simfitstate_0.xpath('ns:constraints',
1239	namespaces={'ns': CANSAS_NS})
1240	constraint_list = constraints[0].xpath('ns:constraint',
1241	namespaces={'ns': CANSAS_NS})
1242	for constraint in constraint_list:
1243	attrs = constraint.attrib
1244	sim_fit_state.constraints_list.append(attrs)
1245
1246	return sim_fit_state
1247	else:
1248	return None
1249
1250	def _parse_save_state_entry(self, dom):
1251	"""
1252	Parse a SASentry
1253
1254	:param node: SASentry node
1255
1256	:return: Data1D/Data2D object
1257
1258	"""
1259	node = dom.xpath('ns:data_class', namespaces={'ns': CANSAS_NS})
1260	return_value, _ = self._parse_entry(dom)
1261	return return_value, _
1262
1263	def _read_cansas(self, path):
1264	"""
1265	Load data and fitting information from a CanSAS XML file.
1266
1267	:param path: file path
1268	:return: Data1D object if a single SASentry was found,
1269	or a list of Data1D objects if multiple entries were found,
1270	or None of nothing was found
1271	:raise RuntimeError: when the file can't be opened
1272	:raise ValueError: when the length of the data vectors are inconsistent
1273	"""
1274	output = []
1275	simfitstate = None
1276	basename = os.path.basename(path)
1277	root, extension = os.path.splitext(basename)
1278	ext = extension.lower()
1279	try:
1280	if os.path.isfile(path):
1281	if ext in self.ext or ext == '.xml':
1282	tree = etree.parse(path, parser=etree.ETCompatXMLParser())
1283	# Check the format version number
1284	# Specifying the namespace will take care of the file
1285	# format version
1286	root = tree.getroot()
1287	entry_list = root.xpath('ns:SASentry',
1288	namespaces={'ns': CANSAS_NS})
1289	for entry in entry_list:
1290	try:
1291	sas_entry, _ = self._parse_save_state_entry(entry)
1292	except:
1293	raise
1294	fitstate = self._parse_state(entry)
1295
1296	# state could be None when .svs file is loaded
1297	# in this case, skip appending to output
1298	if fitstate is not None:
1299	sas_entry.meta_data['fitstate'] = fitstate
1300	sas_entry.filename = fitstate.file
1301	output.append(sas_entry)
1302
1303	else:
1304	self.call_back(format=ext)
1305	raise RuntimeError, "%s is not a file" % path
1306
1307	# Return output consistent with the loader's api
1308	if len(output) == 0:
1309	self.call_back(state=None, datainfo=None, format=ext)
1310	return None
1311	else:
1312	for ind in range(len(output)):
1313	# Call back to post the new state
1314	state = output[ind].meta_data['fitstate']
1315	t = time.localtime(state.timestamp)
1316	time_str = time.strftime("%b %d %H:%M", t)
1317	# Check that no time stamp is already appended
1318	max_char = state.file.find("[")
1319	if max_char < 0:
1320	max_char = len(state.file)
1321	original_fname = state.file[0:max_char]
1322	state.file = original_fname + ' [' + time_str + ']'
1323
1324	if state is not None and state.is_data is not None:
1325	output[ind].is_data = state.is_data
1326
1327	output[ind].filename = state.file
1328	state.data = output[ind]
1329	state.data.name = output[ind].filename # state.data_name
1330	state.data.id = state.data_id
1331	if state.is_data is not None:
1332	state.data.is_data = state.is_data
1333	if output[ind].run_name is not None\
1334	and len(output[ind].run_name) != 0:
1335	if isinstance(output[ind].run_name, dict):
1336	name = output[ind].run_name.keys()[0]
1337	else:
1338	name = output[ind].run_name
1339	else:
1340	name = original_fname
1341	state.data.group_id = name
1342	state.version = fitstate.version
1343	# store state in fitting
1344	self.call_back(state=state,
1345	datainfo=output[ind], format=ext)
1346	self.state = state
1347	simfitstate = self._parse_simfit_state(entry)
1348	if simfitstate is not None:
1349	self.call_back(state=simfitstate)
1350
1351	return output
1352	except:
1353	self.call_back(format=ext)
1354	raise
1355
1356	def write(self, filename, datainfo=None, fitstate=None):
1357	"""
1358	Write the content of a Data1D as a CanSAS XML file only for standalone
1359
1360	:param filename: name of the file to write
1361	:param datainfo: Data1D object
1362	:param fitstate: PageState object
1363
1364	"""
1365	# Sanity check
1366	if self.cansas:
1367	# Add fitting information to the XML document
1368	doc = self.write_toXML(datainfo, fitstate)
1369	# Write the XML document
1370	else:
1371	doc = fitstate.to_xml(file=filename)
1372
1373	# Save the document no matter the type
1374	fd = open(filename, 'w')
1375	fd.write(doc.toprettyxml())
1376	fd.close()
1377
1378	def write_toXML(self, datainfo=None, state=None, batchfit=None):
1379	"""
1380	Write toXML, a helper for write(),
1381	could be used by guimanager._on_save()
1382
1383	: return: xml doc
1384	"""
1385
1386	self.batchfit_params = batchfit
1387	if state.data is None or not state.data.is_data:
1388	return None
1389	# make sure title and data run are filled.
1390	if state.data.title is None or state.data.title == '':
1391	state.data.title = state.data.name
1392	if state.data.run_name is None or state.data.run_name == {}:
1393	state.data.run = [str(state.data.name)]
1394	state.data.run_name[0] = state.data.name
1395
1396	data = state.data
1397	doc, sasentry = self._to_xml_doc(data)
1398
1399	if state is not None:
1400	doc = state.to_xml(doc=doc, file=data.filename, entry_node=sasentry,
1401	batch_fit_state=self.batchfit_params)
1402
1403	return doc
1404
1405	# Simple html report templet
1406	HEADER = "<html>\n"
1407	HEADER += "<head>\n"
1408	HEADER += "<meta http-equiv=Content-Type content='text/html; "
1409	HEADER += "charset=windows-1252'> \n"
1410	HEADER += "<meta name=Generator >\n"
1411	HEADER += "</head>\n"
1412	HEADER += "<body lang=EN-US>\n"
1413	HEADER += "<div class=WordSection1>\n"
1414	HEADER += "<p class=MsoNormal><b><span ><center><font size='4' >"
1415	HEADER += "%s</font></center></span></center></b></p>"
1416	HEADER += "<p class=MsoNormal> </p>"
1417	PARA = "<p class=MsoNormal><font size='4' > %s \n"
1418	PARA += "</font></p>"
1419	CENTRE = "<p class=MsoNormal><center><font size='4' > %s \n"
1420	CENTRE += "</font></center></p>"
1421	FEET_1 = \
1422	"""
1423	<p class=MsoNormal> </p>
1424	<br>
1425	<p class=MsoNormal><b><span ><center> <font size='4' > Graph
1426	</font></span></center></b></p>
1427	<p class=MsoNormal> </p>
1428	<center>
1429	<br><font size='4' >Model Computation</font>
1430	<br><font size='4' >Data: "%s"</font><br>
1431	"""
1432	FEET_2 = \
1433	"""
1434	<img src="%s" >
1435	</img>
1436	"""
1437	FEET_3 = \
1438	"""
1439	</center>
1440	</div>
1441	</body>
1442	</html>
1443	"""
1444	ELINE = "<p class=MsoNormal> </p>"

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SasView

source: sasview/src/sas/sasgui/perspectives/fitting/pagestate.py @ 05d167e

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