fitting.py @ 7b07fbe

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalcmagnetic_scattrelease-4.2.2ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload

Last change on this file since 7b07fbe was 66acafe, checked in by GitHub <noreply@…>, 7 years ago

Merge pull request #104 from lewisodriscoll/ticket-861

Ticket 861

Property mode set to 100755

File size: 90.8 KB

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[f76bf17]	1	"""
	2	Fitting perspective
	3	"""
	4	################################################################################
	5	#This software was developed by the University of Tennessee as part of the
	6	#Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
	7	#project funded by the US National Science Foundation.
	8	#
	9	#See the license text in license.txt
	10	#
	11	#copyright 2009, University of Tennessee
	12	################################################################################
[a534432]	13	from __future__ import print_function
	14
[f76bf17]	15	import re
	16	import sys
	17	import os
	18	import wx
	19	import logging
[9a5097c]	20	import numpy as np
[f76bf17]	21	import time
	22	from copy import deepcopy
[934ce649]	23	import traceback
[f76bf17]	24
[b699768]	25	from sas.sascalc.dataloader.loader import Loader
[d85c194]	26	from sas.sasgui.guiframe.dataFitting import Data2D
	27	from sas.sasgui.guiframe.dataFitting import Data1D
	28	from sas.sasgui.guiframe.dataFitting import check_data_validity
	29	from sas.sasgui.guiframe.events import NewPlotEvent
	30	from sas.sasgui.guiframe.events import StatusEvent
	31	from sas.sasgui.guiframe.events import EVT_SLICER_PANEL
	32	from sas.sasgui.guiframe.events import EVT_SLICER_PARS_UPDATE
	33	from sas.sasgui.guiframe.gui_style import GUIFRAME_ID
	34	from sas.sasgui.guiframe.plugin_base import PluginBase
	35	from sas.sasgui.guiframe.data_processor import BatchCell
[b699768]	36	from sas.sascalc.fit.BumpsFitting import BumpsFit as Fit
[d85c194]	37	from sas.sasgui.perspectives.fitting.console import ConsoleUpdate
	38	from sas.sasgui.perspectives.fitting.fitproblem import FitProblemDictionary
	39	from sas.sasgui.perspectives.fitting.fitpanel import FitPanel
	40	from sas.sasgui.perspectives.fitting.resultpanel import ResultPanel, PlotResultEvent
	41
	42	from sas.sasgui.perspectives.fitting.fit_thread import FitThread
	43	from sas.sasgui.perspectives.fitting.pagestate import Reader
	44	from sas.sasgui.perspectives.fitting.fitpage import Chi2UpdateEvent
	45	from sas.sasgui.perspectives.calculator.model_editor import TextDialog
	46	from sas.sasgui.perspectives.calculator.model_editor import EditorWindow
	47	from sas.sasgui.guiframe.gui_manager import MDIFrame
	48	from sas.sasgui.guiframe.documentation_window import DocumentationWindow
[73cbeec]	49	from sas.sasgui.perspectives.fitting.gpu_options import GpuOptions
[f76bf17]	50
[934ce649]	51	from . import models
	52
[463e7ffc]	53	logger = logging.getLogger(__name__)
[c155a16]	54
[f76bf17]	55	MAX_NBR_DATA = 4
	56
	57	(PageInfoEvent, EVT_PAGE_INFO) = wx.lib.newevent.NewEvent()
	58
	59
	60	if sys.platform == "win32":
	61	ON_MAC = False
	62	else:
	63	ON_MAC = True
	64
[05228b0]	65	import bumps.options
	66	from bumps.gui.fit_dialog import show_fit_config
	67	try:
	68	from bumps.gui.fit_dialog import EVT_FITTER_CHANGED
	69	except ImportError:
[243fbc0]	70	# CRUFT: bumps 0.7.5.8 and below
[05228b0]	71	EVT_FITTER_CHANGED = None # type: wx.PyCommandEvent
[f76bf17]	72
	73	class Plugin(PluginBase):
	74	"""
	75	Fitting plugin is used to perform fit
	76	"""
[f21d496]	77	def __init__(self):
	78	PluginBase.__init__(self, name="Fitting")
[f76bf17]	79
	80	#list of panel to send to guiframe
	81	self.mypanels = []
	82	# reference to the current running thread
	83	self.calc_2D = None
	84	self.calc_1D = None
	85
	86	self.color_dict = {}
	87
	88	self.fit_thread_list = {}
	89	self.residuals = None
	90	self.weight = None
	91	self.fit_panel = None
	92	self.plot_panel = None
	93	# Start with a good default
	94	self.elapsed = 0.022
	95	self.fit_panel = None
	96	## dictionary of page closed and id
	97	self.closed_page_dict = {}
	98	## Relative error desired in the sum of squares (float)
	99	self.batch_reset_flag = True
	100	#List of selected data
	101	self.selected_data_list = []
	102	## list of slicer panel created to display slicer parameters and results
	103	self.slicer_panels = []
	104	# model 2D view
	105	self.model2D_id = None
	106	#keep reference of the simultaneous fit page
	107	self.sim_page = None
	108	self.sim_menu = None
	109	self.batch_page = None
	110	self.batch_menu = None
	111	self.index_model = 0
	112	self.test_model_color = None
	113	#Create a reader for fit page's state
	114	self.state_reader = None
	115	self._extensions = '.fitv'
	116	self.menu1 = None
	117	self.new_model_frame = None
	118
	119	self.temp_state = []
	120	self.state_index = 0
	121	self.sfile_ext = None
	122	# take care of saving data, model and page associated with each other
	123	self.page_finder = {}
	124	# Log startup
[c155a16]	125	logger.info("Fitting plug-in started")
[f76bf17]	126	self.batch_capable = self.get_batch_capable()
	127
	128	def get_batch_capable(self):
	129	"""
	130	Check if the plugin has a batch capability
	131	"""
	132	return True
	133
	134	def create_fit_problem(self, page_id):
	135	"""
	136	Given an ID create a fitproblem container
	137	"""
	138	self.page_finder[page_id] = FitProblemDictionary()
	139
	140	def delete_fit_problem(self, page_id):
	141	"""
	142	Given an ID create a fitproblem container
	143	"""
	144	if page_id in self.page_finder.iterkeys():
	145	del self.page_finder[page_id]
	146
	147	def add_color(self, color, id):
	148	"""
	149	adds a color as a key with a plot id as its value to a dictionary
	150	"""
	151	self.color_dict[id] = color
	152
	153	def on_batch_selection(self, flag):
	154	"""
	155	switch the the notebook of batch mode or not
	156	"""
	157	self.batch_on = flag
	158	if self.fit_panel is not None:
	159	self.fit_panel.batch_on = self.batch_on
	160
	161	def populate_menu(self, owner):
	162	"""
	163	Create a menu for the Fitting plug-in
	164
	165	:param id: id to create a menu
	166	:param owner: owner of menu
	167
	168	:return: list of information to populate the main menu
	169
	170	"""
	171	#Menu for fitting
	172	self.menu1 = wx.Menu()
	173	id1 = wx.NewId()
	174	simul_help = "Add new fit panel"
	175	self.menu1.Append(id1, '&New Fit Page', simul_help)
	176	wx.EVT_MENU(owner, id1, self.on_add_new_page)
	177	self.menu1.AppendSeparator()
	178	self.id_simfit = wx.NewId()
	179	simul_help = "Constrained or Simultaneous Fit"
	180	self.menu1.Append(self.id_simfit, '&Constrained or Simultaneous Fit', simul_help)
	181	wx.EVT_MENU(owner, self.id_simfit, self.on_add_sim_page)
	182	self.sim_menu = self.menu1.FindItemById(self.id_simfit)
	183	self.sim_menu.Enable(False)
	184	#combined Batch
	185	self.id_batchfit = wx.NewId()
	186	batch_help = "Combined Batch"
	187	self.menu1.Append(self.id_batchfit, '&Combine Batch Fit', batch_help)
	188	wx.EVT_MENU(owner, self.id_batchfit, self.on_add_sim_page)
	189	self.batch_menu = self.menu1.FindItemById(self.id_batchfit)
	190	self.batch_menu.Enable(False)
	191
	192	self.menu1.AppendSeparator()
	193	self.id_bumps_options = wx.NewId()
	194	bopts_help = "Fitting options"
	195	self.menu1.Append(self.id_bumps_options, 'Fit &Options', bopts_help)
	196	wx.EVT_MENU(owner, self.id_bumps_options, self.on_bumps_options)
	197	self.bumps_options_menu = self.menu1.FindItemById(self.id_bumps_options)
	198	self.bumps_options_menu.Enable(True)
	199
[73cbeec]	200	self.id_gpu_options_panel = wx.NewId()
	201	self.menu1.Append(self.id_gpu_options_panel, "OpenCL Options", "Choose OpenCL driver or turn it off")
	202	wx.EVT_MENU(owner, self.id_gpu_options_panel, self.on_gpu_options)
	203
[f76bf17]	204	self.id_result_panel = wx.NewId()
	205	self.menu1.Append(self.id_result_panel, "Fit Results", "Show fit results panel")
[9776c82]	206	wx.EVT_MENU(owner, self.id_result_panel, self.on_fit_results)
[f76bf17]	207	self.menu1.AppendSeparator()
	208
	209	self.id_reset_flag = wx.NewId()
	210	resetf_help = "BatchFit: If checked, the initial param values will be "
	211	resetf_help += "propagated from the previous results. "
	212	resetf_help += "Otherwise, the same initial param values will be used "
	213	resetf_help += "for all fittings."
	214	self.menu1.AppendCheckItem(self.id_reset_flag,
	215	"Chain Fitting [BatchFit Only]",
	216	resetf_help)
	217	wx.EVT_MENU(owner, self.id_reset_flag, self.on_reset_batch_flag)
	218	chain_menu = self.menu1.FindItemById(self.id_reset_flag)
	219	chain_menu.Check(not self.batch_reset_flag)
	220	chain_menu.Enable(self.batch_on)
	221
	222	self.menu1.AppendSeparator()
	223	self.edit_model_menu = wx.Menu()
	224	# Find and put files name in menu
	225	try:
	226	self.set_edit_menu(owner=owner)
	227	except:
	228	raise
	229
	230	self.id_edit = wx.NewId()
[ec72ceb]	231	self.menu1.AppendMenu(self.id_edit, "Plugin Model Operations",
[e92a352]	232	self.edit_model_menu)
[f76bf17]	233	#create menubar items
	234	return [(self.menu1, self.sub_menu)]
	235
	236	def edit_custom_model(self, event):
	237	"""
	238	Get the python editor panel
	239	"""
[f21d496]	240	event_id = event.GetId()
	241	label = self.edit_menu.GetLabel(event_id)
[d85c194]	242	from sas.sasgui.perspectives.calculator.pyconsole import PyConsole
[f76bf17]	243	filename = os.path.join(models.find_plugins_dir(), label)
	244	frame = PyConsole(parent=self.parent, manager=self,
	245	panel=self.fit_panel,
[ec72ceb]	246	title='Advanced Plugin Model Editor',
[f76bf17]	247	filename=filename)
	248	self.put_icon(frame)
	249	frame.Show(True)
	250
	251	def delete_custom_model(self, event):
	252	"""
	253	Delete custom model file
	254	"""
[f21d496]	255	event_id = event.GetId()
	256	label = self.delete_menu.GetLabel(event_id)
[f76bf17]	257	toks = os.path.splitext(label)
	258	path = os.path.join(models.find_plugins_dir(), toks[0])
[489f53a]	259	message = "Are you sure you want to delete the file {}?".format(path)
	260	dlg = wx.MessageDialog(self.frame, message, '', wx.YES_NO \| wx.ICON_QUESTION)
	261	if not dlg.ShowModal() == wx.ID_YES:
	262	return
[f76bf17]	263	try:
	264	for ext in ['.py', '.pyc']:
	265	p_path = path + ext
[489f53a]	266	if ext == '.pyc' and not os.path.isfile(path + ext):
	267	# If model is invalid, .pyc file may not exist as model has
	268	# never been compiled. Don't try and delete it
	269	continue
[f76bf17]	270	os.remove(p_path)
	271	self.update_custom_combo()
	272	if os.path.isfile(p_path):
[e92a352]	273	msg = "Sorry! unable to delete the default "
	274	msg += "plugin model... \n"
[f76bf17]	275	msg += "Please manually remove the files (.py, .pyc) "
	276	msg += "in the 'plugin_models' folder \n"
	277	msg += "inside of the SasView application, "
	278	msg += "and try it again."
	279	wx.MessageBox(msg, 'Info')
[934ce649]	280	#evt = StatusEvent(status=msg, type='stop', info='warning')
	281	#wx.PostEvent(self.parent, evt)
[f76bf17]	282	else:
[f21d496]	283	self.delete_menu.Delete(event_id)
[f76bf17]	284	for item in self.edit_menu.GetMenuItems():
	285	if item.GetLabel() == label:
	286	self.edit_menu.DeleteItem(item)
[e92a352]	287	msg = "The plugin model, %s, has been deleted." % label
[934ce649]	288	evt = StatusEvent(status=msg, type='stop', info='info')
	289	wx.PostEvent(self.parent, evt)
[f76bf17]	290	break
[7673ecd]	291	except Exception:
	292	import traceback; traceback.print_exc()
[f76bf17]	293	msg = 'Delete Error: \nCould not delete the file; Check if in use.'
	294	wx.MessageBox(msg, 'Error')
	295
	296	def make_sum_model(self, event):
	297	"""
	298	Edit summodel template and make one
	299	"""
[f21d496]	300	event_id = event.GetId()
[f76bf17]	301	model_manager = models.ModelManager()
	302	model_list = model_manager.get_model_name_list()
	303	plug_dir = models.find_plugins_dir()
[6f16e25]	304	textdial = TextDialog(None, self, wx.ID_ANY, 'Easy Sum/Multi(p1, p2) Editor',
[f76bf17]	305	model_list, plug_dir)
	306	self.put_icon(textdial)
	307	textdial.ShowModal()
	308	textdial.Destroy()
	309
	310	def make_new_model(self, event):
	311	"""
	312	Make new model
	313	"""
[a534432]	314	if self.new_model_frame is not None:
[f76bf17]	315	self.new_model_frame.Show(False)
	316	self.new_model_frame.Show(True)
	317	else:
[f21d496]	318	event_id = event.GetId()
[f76bf17]	319	dir_path = models.find_plugins_dir()
[ec72ceb]	320	title = "New Plugin Model Function"
[f76bf17]	321	self.new_model_frame = EditorWindow(parent=self, base=self,
	322	path=dir_path, title=title)
	323	self.put_icon(self.new_model_frame)
	324	self.new_model_frame.Show(True)
	325
[105ef92]	326	def load_plugin_models(self, event):
	327	"""
	328	Update of models in plugin_models folder
	329	"""
	330	event_id = event.GetId()
[c807957]	331	self.update_custom_combo()
[105ef92]	332
[f76bf17]	333	def update_custom_combo(self):
	334	"""
	335	Update custom model list in the fitpage combo box
	336	"""
[ec72ceb]	337	custom_model = 'Plugin Models'
[f76bf17]	338	try:
	339	# Update edit menus
	340	self.set_edit_menu_helper(self.parent, self.edit_custom_model)
	341	self.set_edit_menu_helper(self.parent, self.delete_custom_model)
	342	temp = self.fit_panel.reset_pmodel_list()
	343	if temp:
[e92a352]	344	# Set the new plugin model list for all fit pages
[f76bf17]	345	for uid, page in self.fit_panel.opened_pages.iteritems():
	346	if hasattr(page, "formfactorbox"):
	347	page.model_list_box = temp
	348	current_val = page.formfactorbox.GetLabel()
	349	#if page.plugin_rbutton.GetValue():
	350	mod_cat = page.categorybox.GetStringSelection()
	351	if mod_cat == custom_model:
	352	#pos = page.formfactorbox.GetSelection()
	353	page._show_combox_helper()
	354	new_val = page.formfactorbox.GetLabel()
	355	if current_val != new_val and new_val != '':
	356	page.formfactorbox.SetLabel(new_val)
	357	else:
	358	page.formfactorbox.SetLabel(current_val)
[33dc18f]	359	if hasattr(page, 'structurebox'):
[252d959]	360	selected_name = page.structurebox.GetStringSelection()
	361
[33dc18f]	362	page.structurebox.Clear()
[2504b5a]	363	page.initialize_combox()
[252d959]	364
	365	index = page.structurebox.FindString(selected_name)
	366	if index == -1:
	367	index = 0
	368	page.structurebox.SetSelection(index)
	369	page._on_select_model()
[f76bf17]	370	except:
[c155a16]	371	logger.error("update_custom_combo: %s", sys.exc_value)
[f76bf17]	372
	373	def set_edit_menu(self, owner):
	374	"""
	375	Set list of the edit model menu labels
	376	"""
[f21d496]	377	wx_id = wx.NewId()
[f76bf17]	378	#new_model_menu = wx.Menu()
[ec72ceb]	379	self.edit_model_menu.Append(wx_id, 'New Plugin Model',
[f76bf17]	380	'Add a new model function')
[f21d496]	381	wx.EVT_MENU(owner, wx_id, self.make_new_model)
[489f53a]	382
[f21d496]	383	wx_id = wx.NewId()
	384	self.edit_model_menu.Append(wx_id, 'Sum\|Multi(p1, p2)',
[f76bf17]	385	'Sum of two model functions')
[f21d496]	386	wx.EVT_MENU(owner, wx_id, self.make_sum_model)
[105ef92]	387
[f76bf17]	388	e_id = wx.NewId()
	389	self.edit_menu = wx.Menu()
	390	self.edit_model_menu.AppendMenu(e_id,
[ec72ceb]	391	'Advanced Plugin Editor', self.edit_menu)
[f76bf17]	392	self.set_edit_menu_helper(owner, self.edit_custom_model)
	393
	394	d_id = wx.NewId()
	395	self.delete_menu = wx.Menu()
	396	self.edit_model_menu.AppendMenu(d_id,
[ec72ceb]	397	'Delete Plugin Models', self.delete_menu)
[f76bf17]	398	self.set_edit_menu_helper(owner, self.delete_custom_model)
	399
[105ef92]	400	wx_id = wx.NewId()
[ec72ceb]	401	self.edit_model_menu.Append(wx_id, 'Load Plugin Models',
[105ef92]	402	'(Re)Load all models present in user plugin_models folder')
	403	wx.EVT_MENU(owner, wx_id, self.load_plugin_models)
[489f53a]	404
[f76bf17]	405	def set_edit_menu_helper(self, owner=None, menu=None):
	406	"""
	407	help for setting list of the edit model menu labels
	408	"""
[a534432]	409	if menu is None:
[f76bf17]	410	menu = self.edit_custom_model
	411	list_fnames = os.listdir(models.find_plugins_dir())
	412	list_fnames.sort()
	413	for f_item in list_fnames:
	414	name = os.path.basename(f_item)
	415	toks = os.path.splitext(name)
	416	if toks[-1] == '.py' and not toks[0] == '__init__':
	417	if menu == self.edit_custom_model:
	418	if toks[0] == 'easy_sum_of_p1_p2':
	419	continue
	420	submenu = self.edit_menu
	421	else:
	422	submenu = self.delete_menu
	423	has_file = False
	424	for item in submenu.GetMenuItems():
	425	if name == submenu.GetLabel(item.GetId()):
	426	has_file = True
	427	if not has_file:
[f21d496]	428	wx_id = wx.NewId()
	429	submenu.Append(wx_id, name)
	430	wx.EVT_MENU(owner, wx_id, menu)
[f76bf17]	431	has_file = False
	432
	433	def put_icon(self, frame):
	434	"""
	435	Put icon in the frame title bar
	436	"""
	437	if hasattr(frame, "IsIconized"):
	438	if not frame.IsIconized():
	439	try:
	440	icon = self.parent.GetIcon()
	441	frame.SetIcon(icon)
	442	except:
	443	pass
	444
	445	def on_add_sim_page(self, event):
	446	"""
	447	Create a page to access simultaneous fit option
	448	"""
[f21d496]	449	event_id = event.GetId()
[f76bf17]	450	caption = "Const & Simul Fit"
	451	page = self.sim_page
[f21d496]	452	if event_id == self.id_batchfit:
[f76bf17]	453	caption = "Combined Batch"
	454	page = self.batch_page
	455
	456	def set_focus_page(page):
	457	page.Show(True)
	458	page.Refresh()
	459	page.SetFocus()
	460	#self.parent._mgr.Update()
	461	msg = "%s already opened\n" % str(page.window_caption)
	462	wx.PostEvent(self.parent, StatusEvent(status=msg))
	463
[a534432]	464	if page is not None:
[f76bf17]	465	return set_focus_page(page)
	466	if caption == "Const & Simul Fit":
	467	self.sim_page = self.fit_panel.add_sim_page(caption=caption)
	468	else:
	469	self.batch_page = self.fit_panel.add_sim_page(caption=caption)
	470
	471	def get_context_menu(self, plotpanel=None):
	472	"""
	473	Get the context menu items available for P(r).them allow fitting option
	474	for Data2D and Data1D only.
	475
	476	:param graph: the Graph object to which we attach the context menu
	477
	478	:return: a list of menu items with call-back function
	479
	480	:note: if Data1D was generated from Theory1D
	481	the fitting option is not allowed
	482
	483	"""
	484	self.plot_panel = plotpanel
	485	graph = plotpanel.graph
	486	fit_option = "Select data for fitting"
	487	fit_hint = "Dialog with fitting parameters "
	488
	489	if graph.selected_plottable not in plotpanel.plots:
	490	return []
	491	item = plotpanel.plots[graph.selected_plottable]
	492	if item.__class__.__name__ is "Data2D":
	493	if hasattr(item, "is_data"):
	494	if item.is_data:
	495	return [[fit_option, fit_hint, self._onSelect]]
	496	else:
	497	return []
	498	return [[fit_option, fit_hint, self._onSelect]]
	499	else:
	500
	501	# if is_data is true , this in an actual data loaded
	502	#else it is a data created from a theory model
	503	if hasattr(item, "is_data"):
	504	if item.is_data:
	505	return [[fit_option, fit_hint, self._onSelect]]
	506	else:
	507	return []
	508	return [[fit_option, fit_hint, self._onSelect]]
	509	return []
	510
	511	def get_panels(self, parent):
	512	"""
	513	Create and return a list of panel objects
	514	"""
	515	self.parent = parent
	516	#self.parent.Bind(EVT_FITSTATE_UPDATE, self.on_set_state_helper)
	517	# Creation of the fit panel
	518	self.frame = MDIFrame(self.parent, None, 'None', (100, 200))
	519	self.fit_panel = FitPanel(parent=self.frame, manager=self)
	520	self.frame.set_panel(self.fit_panel)
	521	self._frame_set_helper()
	522	self.on_add_new_page(event=None)
	523	#Set the manager for the main panel
	524	self.fit_panel.set_manager(self)
	525	# List of windows used for the perspective
	526	self.perspective = []
	527	self.perspective.append(self.fit_panel.window_name)
	528
	529	self.result_frame = MDIFrame(self.parent, None, ResultPanel.window_caption, (220, 200))
	530	self.result_panel = ResultPanel(parent=self.result_frame, manager=self)
	531	self.perspective.append(self.result_panel.window_name)
	532
	533	#index number to create random model name
	534	self.index_model = 0
	535	self.index_theory = 0
	536	self.parent.Bind(EVT_SLICER_PANEL, self._on_slicer_event)
	537	self.parent.Bind(EVT_SLICER_PARS_UPDATE, self._onEVT_SLICER_PANEL)
[05228b0]	538
[243fbc0]	539	# CRUFT: EVT_FITTER_CHANGED is not None for bumps 0.7.5.9 and above
[05228b0]	540	if EVT_FITTER_CHANGED is not None:
	541	self.parent.Bind(EVT_FITTER_CHANGED, self.on_fitter_changed)
	542	self._set_fitter_label(bumps.options.FIT_CONFIG)
	543
[f76bf17]	544	#self.parent._mgr.Bind(wx.aui.EVT_AUI_PANE_CLOSE,self._onclearslicer)
	545	#Create reader when fitting panel are created
	546	self.state_reader = Reader(self.set_state)
	547	#append that reader to list of available reader
	548	loader = Loader()
	549	loader.associate_file_reader(".fitv", self.state_reader)
	550	#Send the fitting panel to guiframe
	551	self.mypanels.append(self.fit_panel)
	552	self.mypanels.append(self.result_panel)
	553	return self.mypanels
	554
	555	def clear_panel(self):
	556	"""
	557	"""
	558	self.fit_panel.clear_panel()
	559
	560	def delete_data(self, data):
	561	"""
	562	delete the given data from panel
	563	"""
	564	self.fit_panel.delete_data(data)
	565
	566	def set_data(self, data_list=None):
	567	"""
	568	receive a list of data to fit
	569	"""
	570	if data_list is None:
	571	data_list = []
	572	selected_data_list = []
	573	if self.batch_on:
[098f3d2]	574	self.add_fit_page(data=data_list)
[f76bf17]	575	else:
	576	if len(data_list) > MAX_NBR_DATA:
	577	from fitting_widgets import DataDialog
	578	dlg = DataDialog(data_list=data_list, nb_data=MAX_NBR_DATA)
	579	if dlg.ShowModal() == wx.ID_OK:
	580	selected_data_list = dlg.get_data()
	581	dlg.Destroy()
	582
	583	else:
	584	selected_data_list = data_list
	585	try:
	586	group_id = wx.NewId()
	587	for data in selected_data_list:
	588	if data is not None:
	589	# 2D has no same group_id
	590	if data.__class__.__name__ == 'Data2D':
	591	group_id = wx.NewId()
	592	data.group_id = group_id
	593	if group_id not in data.list_group_id:
	594	data.list_group_id.append(group_id)
[098f3d2]	595	self.add_fit_page(data=[data])
[f76bf17]	596	except:
[098f3d2]	597	msg = "Fitting set_data: " + str(sys.exc_value)
[f76bf17]	598	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error"))
	599
	600	def set_theory(self, theory_list=None):
	601	"""
	602	"""
	603	#set the model state for a given theory_state:
	604	for item in theory_list:
	605	try:
	606	_, theory_state = item
	607	self.fit_panel.set_model_state(theory_state)
[7673ecd]	608	except Exception:
[f76bf17]	609	msg = "Fitting: cannot deal with the theory received"
[934ce649]	610	evt = StatusEvent(status=msg, info="error")
[c155a16]	611	logger.error("set_theory " + msg + "\n" + str(sys.exc_value))
[934ce649]	612	wx.PostEvent(self.parent, evt)
[f76bf17]	613
	614	def set_state(self, state=None, datainfo=None, format=None):
	615	"""
	616	Call-back method for the fit page state reader.
	617	This method is called when a .fitv/.svs file is loaded.
	618
	619	: param state: PageState object
	620	: param datainfo: data
	621	"""
[e89aed5]	622	from pagestate import PageState
	623	from simfitpage import SimFitPageState
	624	if isinstance(state, PageState):
[f76bf17]	625	state = state.clone()
	626	self.temp_state.append(state)
[e89aed5]	627	elif isinstance(state, SimFitPageState):
	628	state.load_from_save_state(self)
[f76bf17]	629	else:
	630	self.temp_state = []
	631	# index to start with for a new set_state
	632	self.state_index = 0
	633	# state file format
	634	self.sfile_ext = format
	635
	636	self.on_set_state_helper(event=None)
	637
	638	def on_set_state_helper(self, event=None):
	639	"""
	640	Set_state_helper. This actually sets state
	641	after plotting data from state file.
	642
	643	: event: FitStateUpdateEvent called
	644	by dataloader.plot_data from guiframe
	645	"""
	646	if len(self.temp_state) == 0:
	647	if self.state_index == 0 and len(self.mypanels) <= 0 \
	648	and self.sfile_ext == '.svs':
	649	self.temp_state = []
	650	self.state_index = 0
	651	return
	652
	653	try:
	654	# Load fitting state
	655	state = self.temp_state[self.state_index]
	656	#panel state should have model selection to set_state
[a534432]	657	if state.formfactorcombobox is not None:
[f76bf17]	658	#set state
	659	data = self.parent.create_gui_data(state.data)
	660	data.group_id = state.data.group_id
	661	self.parent.add_data(data_list={data.id: data})
	662	wx.PostEvent(self.parent, NewPlotEvent(plot=data,
	663	title=data.title))
	664	#need to be fix later make sure we are sendind guiframe.data
	665	#to panel
	666	state.data = data
	667	page = self.fit_panel.set_state(state)
	668	else:
	669	#just set data because set_state won't work
	670	data = self.parent.create_gui_data(state.data)
	671	data.group_id = state.data.group_id
	672	self.parent.add_data(data_list={data.id: data})
	673	wx.PostEvent(self.parent, NewPlotEvent(plot=data,
	674	title=data.title))
	675	page = self.add_fit_page([data])
	676	caption = page.window_caption
	677	self.store_data(uid=page.uid, data_list=page.get_data_list(),
	678	caption=caption)
	679	self.mypanels.append(page)
	680
	681	# get ready for the next set_state
	682	self.state_index += 1
	683
	684	#reset state variables to default when all set_state is finished.
	685	if len(self.temp_state) == self.state_index:
	686
	687	self.temp_state = []
	688	#self.state_index = 0
	689	# Make sure the user sees the fitting panel after loading
	690	#self.parent.set_perspective(self.perspective)
	691	self.on_perspective(event=None)
	692	except:
	693	self.state_index = 0
	694	self.temp_state = []
	695	raise
	696
	697	def set_param2fit(self, uid, param2fit):
	698	"""
	699	Set the list of param names to fit for fitprobelm
	700	"""
	701	self.page_finder[uid].set_param2fit(param2fit)
	702
	703	def set_graph_id(self, uid, graph_id):
	704	"""
	705	Set graph_id for fitprobelm
	706	"""
	707	self.page_finder[uid].set_graph_id(graph_id)
	708
	709	def get_graph_id(self, uid):
	710	"""
	711	Set graph_id for fitprobelm
	712	"""
	713	return self.page_finder[uid].get_graph_id()
	714
	715	def save_fit_state(self, filepath, fitstate):
	716	"""
	717	save fit page state into file
	718	"""
	719	self.state_reader.write(filename=filepath, fitstate=fitstate)
	720
	721	def set_fit_weight(self, uid, flag, is2d=False, fid=None):
	722	"""
	723	Set the fit weights of a given page for all
	724	its data by default. If fid is provide then set the range
	725	only for the data with fid as id
	726	:param uid: id corresponding to a fit page
	727	:param fid: id corresponding to a fit problem (data, model)
	728	:param weight: current dy data
	729	"""
[098f3d2]	730	# If we are not dealing with a specific fit problem, then
	731	# there is no point setting the weights.
	732	if fid is None:
	733	return
[f76bf17]	734	if uid in self.page_finder.keys():
	735	self.page_finder[uid].set_weight(flag=flag, is2d=is2d)
	736
	737	def set_fit_range(self, uid, qmin, qmax, fid=None):
	738	"""
	739	Set the fitting range of a given page for all
	740	its data by default. If fid is provide then set the range
	741	only for the data with fid as id
	742	:param uid: id corresponding to a fit page
	743	:param fid: id corresponding to a fit problem (data, model)
	744	:param qmin: minimum value of the fit range
	745	:param qmax: maximum value of the fit range
	746	"""
	747	if uid in self.page_finder.keys():
	748	self.page_finder[uid].set_range(qmin=qmin, qmax=qmax, fid=fid)
	749
	750	def schedule_for_fit(self, value=0, uid=None):
	751	"""
	752	Set the fit problem field to 0 or 1 to schedule that problem to fit.
	753	Schedule the specified fitproblem or get the fit problem related to
	754	the current page and set value.
	755	:param value: integer 0 or 1
	756	:param uid: the id related to a page contaning fitting information
	757	"""
	758	if uid in self.page_finder.keys():
	759	self.page_finder[uid].schedule_tofit(value)
	760
	761	def get_page_finder(self):
	762	"""
	763	return self.page_finder used also by simfitpage.py
	764	"""
	765	return self.page_finder
	766
	767	def set_page_finder(self, modelname, names, values):
	768	"""
	769	Used by simfitpage.py to reset a parameter given the string constrainst.
	770
	771	:param modelname: the name ot the model for with the parameter
	772	has to reset
	773	:param value: can be a string in this case.
	774	:param names: the paramter name
	775	"""
	776	sim_page_id = self.sim_page.uid
	777	for uid, value in self.page_finder.iteritems():
	778	if uid != sim_page_id and uid != self.batch_page.uid:
[f21d496]	779	model_list = value.get_model()
	780	model = model_list[0]
[f76bf17]	781	if model.name == modelname:
	782	value.set_model_param(names, values)
	783	break
	784
	785	def split_string(self, item):
	786	"""
	787	receive a word containing dot and split it. used to split parameterset
	788	name into model name and parameter name example: ::
	789
	790	paramaterset (item) = M1.A
	791	Will return model_name = M1 , parameter name = A
	792
	793	"""
	794	if item.find(".") >= 0:
	795	param_names = re.split("\.", item)
	796	model_name = param_names[0]
	797	##Assume max len is 3; eg., M0.radius.width
	798	if len(param_names) == 3:
	799	param_name = param_names[1] + "." + param_names[2]
	800	else:
	801	param_name = param_names[1]
	802	return model_name, param_name
	803
	804	def on_bumps_options(self, event=None):
[9776c82]	805	"""
	806	Open the bumps options panel.
	807	"""
[05228b0]	808	show_fit_config(self.parent, help=self.on_help)
	809
	810	def on_fitter_changed(self, event):
	811	self._set_fitter_label(event.config)
	812
	813	def _set_fitter_label(self, config):
	814	self.fit_panel.parent.SetTitle(self.fit_panel.window_name
	815	+ " - Active Fitting Optimizer: "
	816	+ config.selected_name)
[7945367]	817
	818	def on_help(self, algorithm_id):
[86b049b]	819	_TreeLocation = "user/sasgui/perspectives/fitting/optimizer.html"
[7945367]	820	_anchor = "#fit-"+algorithm_id
[6f16e25]	821	DocumentationWindow(self.parent, wx.ID_ANY, _TreeLocation, _anchor, "Optimizer Help")
[7945367]	822
[f76bf17]	823
[9776c82]	824	def on_fit_results(self, event=None):
	825	"""
	826	Make the Fit Results panel visible.
	827	"""
	828	self.result_frame.Show()
	829	self.result_frame.Raise()
	830
[73cbeec]	831	def on_gpu_options(self, event=None):
	832	"""
	833	Make the Fit Results panel visible.
	834	"""
	835	dialog = GpuOptions(None, wx.ID_ANY, "")
	836	dialog.Show()
	837
[f76bf17]	838	def stop_fit(self, uid):
	839	"""
[acf8e4a5]	840	Stop the fit
[f76bf17]	841	"""
	842	if uid in self.fit_thread_list.keys():
	843	calc_fit = self.fit_thread_list[uid]
	844	if calc_fit is not None and calc_fit.isrunning():
	845	calc_fit.stop()
	846	msg = "Fit stop!"
	847	wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop"))
	848	del self.fit_thread_list[uid]
	849	#set the fit button label of page when fit stop is trigger from
	850	#simultaneous fit pane
	851	sim_flag = self.sim_page is not None and uid == self.sim_page.uid
	852	batch_flag = self.batch_page is not None and uid == self.batch_page.uid
	853	if sim_flag or batch_flag:
	854	for uid, value in self.page_finder.iteritems():
	855	if value.get_scheduled() == 1:
	856	if uid in self.fit_panel.opened_pages.keys():
	857	panel = self.fit_panel.opened_pages[uid]
	858	panel._on_fit_complete()
	859
	860	def set_smearer(self, uid, smearer, fid, qmin=None, qmax=None, draw=True,
	861	enable_smearer=False):
	862	"""
	863	Get a smear object and store it to a fit problem of fid as id. If proper
	864	flag is enable , will plot the theory with smearing information.
	865
	866	:param smearer: smear object to allow smearing data of id fid
	867	:param enable_smearer: Define whether or not all (data, model) contained
	868	in the structure of id uid will be smeared before fitting.
	869	:param qmin: the maximum value of the theory plotting range
	870	:param qmax: the maximum value of the theory plotting range
	871	:param draw: Determine if the theory needs to be plot
	872	"""
	873	if uid not in self.page_finder.keys():
	874	return
	875	self.page_finder[uid].enable_smearing(flag=enable_smearer)
	876	self.page_finder[uid].set_smearer(smearer, fid=fid)
	877	if draw:
	878	## draw model 1D with smeared data
	879	data = self.page_finder[uid].get_fit_data(fid=fid)
	880	if data is None:
	881	msg = "set_mearer requires at least data.\n"
	882	msg += "Got data = %s .\n" % str(data)
	883	return
	884	#raise ValueError, msg
	885	model = self.page_finder[uid].get_model(fid=fid)
	886	if model is None:
	887	return
	888	enable1D = issubclass(data.__class__, Data1D)
	889	enable2D = issubclass(data.__class__, Data2D)
	890	## if user has already selected a model to plot
	891	## redraw the model with data smeared
	892	smear = self.page_finder[uid].get_smearer(fid=fid)
	893
	894	# compute weight for the current data
	895	weight = self.page_finder[uid].get_weight(fid=fid)
	896
	897	self.draw_model(model=model, data=data, page_id=uid, smearer=smear,
	898	enable1D=enable1D, enable2D=enable2D,
	899	qmin=qmin, qmax=qmax, weight=weight)
	900
	901	def draw_model(self, model, page_id, data=None, smearer=None,
	902	enable1D=True, enable2D=False,
	903	state=None,
	904	fid=None,
	905	toggle_mode_on=False,
	906	qmin=None, qmax=None,
	907	update_chisqr=True, weight=None, source='model'):
	908	"""
	909	Draw model.
	910
	911	:param model: the model to draw
	912	:param name: the name of the model to draw
	913	:param data: the data on which the model is based to be drawn
	914	:param description: model's description
	915	:param enable1D: if true enable drawing model 1D
	916	:param enable2D: if true enable drawing model 2D
	917	:param qmin: Range's minimum value to draw model
	918	:param qmax: Range's maximum value to draw model
	919	:param qstep: number of step to divide the x and y-axis
	920	:param update_chisqr: update chisqr [bool]
	921
	922	"""
	923	#self.weight = weight
	924	if issubclass(data.__class__, Data1D) or not enable2D:
	925	## draw model 1D with no loaded data
	926	self._draw_model1D(model=model,
	927	data=data,
	928	page_id=page_id,
	929	enable1D=enable1D,
	930	smearer=smearer,
	931	qmin=qmin,
	932	qmax=qmax,
	933	fid=fid,
	934	weight=weight,
	935	toggle_mode_on=toggle_mode_on,
	936	state=state,
	937	update_chisqr=update_chisqr,
	938	source=source)
	939	else:
	940	## draw model 2D with no initial data
	941	self._draw_model2D(model=model,
	942	page_id=page_id,
	943	data=data,
	944	enable2D=enable2D,
	945	smearer=smearer,
	946	qmin=qmin,
	947	qmax=qmax,
	948	fid=fid,
	949	weight=weight,
	950	state=state,
	951	toggle_mode_on=toggle_mode_on,
	952	update_chisqr=update_chisqr,
	953	source=source)
	954
	955	def onFit(self, uid):
	956	"""
	957	Get series of data, model, associates parameters and range and send then
[acf8e4a5]	958	to series of fitters. Fit data and model, display result to
[f76bf17]	959	corresponding panels.
	960	:param uid: id related to the panel currently calling this fit function.
	961	"""
	962	if uid is None: raise RuntimeError("no page to fit") # Should never happen
	963
	964	sim_page_uid = getattr(self.sim_page, 'uid', None)
	965	batch_page_uid = getattr(self.batch_page, 'uid', None)
	966
	967	if uid == sim_page_uid:
	968	fit_type = 'simultaneous'
	969	elif uid == batch_page_uid:
	970	fit_type = 'combined_batch'
	971	else:
	972	fit_type = 'single'
	973
	974	fitter_list = []
	975	sim_fitter = None
	976	if fit_type == 'simultaneous':
[acf8e4a5]	977	# for simultaneous fitting only one fitter is needed
	978	sim_fitter = Fit()
[f76bf17]	979	sim_fitter.fitter_id = self.sim_page.uid
	980	fitter_list.append(sim_fitter)
	981
	982	self.current_pg = None
	983	list_page_id = []
	984	fit_id = 0
	985	for page_id, page_info in self.page_finder.iteritems():
	986	# For simulfit (uid give with None), do for-loop
	987	# if uid is specified (singlefit), do it only on the page.
	988	if page_id in (sim_page_uid, batch_page_uid): continue
	989	if fit_type == "single" and page_id != uid: continue
	990
	991	try:
	992	if page_info.get_scheduled() == 1:
	993	page_info.nbr_residuals_computed = 0
	994	page = self.fit_panel.get_page_by_id(page_id)
	995	self.set_fit_weight(uid=page.uid,
	996	flag=page.get_weight_flag(),
	997	is2d=page._is_2D())
	998	if not page.param_toFit:
	999	msg = "No fitting parameters for %s" % page.window_caption
[934ce649]	1000	evt = StatusEvent(status=msg, info="error", type="stop")
	1001	wx.PostEvent(page.parent.parent, evt)
[f76bf17]	1002	return False
	1003	if not page._update_paramv_on_fit():
	1004	msg = "Fitting range or parameter values are"
	1005	msg += " invalid in %s" % \
	1006	page.window_caption
[934ce649]	1007	evt = StatusEvent(status=msg, info="error", type="stop")
	1008	wx.PostEvent(page.parent.parent, evt)
[f76bf17]	1009	return False
	1010
	1011	pars = [str(element[1]) for element in page.param_toFit]
	1012	fitproblem_list = page_info.values()
	1013	for fitproblem in fitproblem_list:
	1014	if sim_fitter is None:
[acf8e4a5]	1015	fitter = Fit()
[f76bf17]	1016	fitter.fitter_id = page_id
	1017	fitter_list.append(fitter)
	1018	else:
	1019	fitter = sim_fitter
	1020	self._add_problem_to_fit(fitproblem=fitproblem,
	1021	pars=pars,
	1022	fitter=fitter,
	1023	fit_id=fit_id)
	1024	fit_id += 1
	1025	list_page_id.append(page_id)
	1026	page_info.clear_model_param()
	1027	except KeyboardInterrupt:
	1028	msg = "Fitting terminated"
[934ce649]	1029	evt = StatusEvent(status=msg, info="info", type="stop")
	1030	wx.PostEvent(self.parent, evt)
[f76bf17]	1031	return True
	1032	except:
[a3f125f0]	1033	raise
[f76bf17]	1034	msg = "Fitting error: %s" % str(sys.exc_value)
[934ce649]	1035	evt = StatusEvent(status=msg, info="error", type="stop")
	1036	wx.PostEvent(self.parent, evt)
[f76bf17]	1037	return False
	1038	## If a thread is already started, stop it
[a534432]	1039	#if self.calc_fitis not None and self.calc_fit.isrunning():
[f76bf17]	1040	# self.calc_fit.stop()
	1041	msg = "Fitting is in progress..."
	1042	wx.PostEvent(self.parent, StatusEvent(status=msg, type="progress"))
	1043
[acf8e4a5]	1044	#Handler used to display fit message
[f76bf17]	1045	handler = ConsoleUpdate(parent=self.parent,
	1046	manager=self,
	1047	improvement_delta=0.1)
	1048
	1049	# batch fit
	1050	batch_inputs = {}
	1051	batch_outputs = {}
	1052	if fit_type == "simultaneous":
	1053	page = self.sim_page
	1054	elif fit_type == "combined_batch":
	1055	page = self.batch_page
	1056	else:
	1057	page = self.fit_panel.get_page_by_id(uid)
	1058	if page.batch_on:
	1059	calc_fit = FitThread(handler=handler,
	1060	fn=fitter_list,
	1061	pars=pars,
	1062	batch_inputs=batch_inputs,
	1063	batch_outputs=batch_outputs,
	1064	page_id=list_page_id,
	1065	completefn=self._batch_fit_complete,
	1066	reset_flag=self.batch_reset_flag)
	1067	else:
	1068	## Perform more than 1 fit at the time
	1069	calc_fit = FitThread(handler=handler,
	1070	fn=fitter_list,
	1071	batch_inputs=batch_inputs,
	1072	batch_outputs=batch_outputs,
	1073	page_id=list_page_id,
	1074	updatefn=handler.update_fit,
	1075	completefn=self._fit_completed)
	1076	#self.fit_thread_list[current_page_id] = calc_fit
	1077	self.fit_thread_list[uid] = calc_fit
	1078	calc_fit.queue()
	1079	calc_fit.ready(2.5)
	1080	msg = "Fitting is in progress..."
	1081	wx.PostEvent(self.parent, StatusEvent(status=msg, type="progress"))
	1082
	1083	return True
	1084
	1085	def remove_plot(self, uid, fid=None, theory=False):
	1086	"""
	1087	remove model plot when a fit page is closed
	1088	:param uid: the id related to the fitpage to close
	1089	:param fid: the id of the fitproblem(data, model, range,etc)
	1090	"""
	1091	if uid not in self.page_finder.keys():
	1092	return
	1093	fitproblemList = self.page_finder[uid].get_fit_problem(fid)
	1094	for fitproblem in fitproblemList:
	1095	data = fitproblem.get_fit_data()
	1096	model = fitproblem.get_model()
	1097	plot_id = None
	1098	if model is not None:
	1099	plot_id = data.id + model.name
	1100	if theory:
	1101	plot_id = data.id + model.name
	1102	group_id = data.group_id
	1103	wx.PostEvent(self.parent, NewPlotEvent(id=plot_id,
	1104	group_id=group_id,
	1105	action='remove'))
	1106
	1107	def store_data(self, uid, data_list=None, caption=None):
	1108	"""
	1109	Recieve a list of data and store them ans well as a caption of
	1110	the fit page where they come from.
	1111	:param uid: if related to a fit page
	1112	:param data_list: list of data to fit
	1113	:param caption: caption of the window related to these data
	1114	"""
	1115	if data_list is None:
	1116	data_list = []
	1117
	1118	self.page_finder[uid].set_fit_data(data=data_list)
	1119	if caption is not None:
	1120	self.page_finder[uid].set_fit_tab_caption(caption=caption)
	1121
	1122	def on_add_new_page(self, event=None):
	1123	"""
	1124	ask fit panel to create a new empty page
	1125	"""
	1126	try:
	1127	page = self.fit_panel.add_empty_page()
	1128	# add data associated to the page created
[a534432]	1129	if page is not None:
[934ce649]	1130	evt = StatusEvent(status="Page Created", info="info")
	1131	wx.PostEvent(self.parent, evt)
[f76bf17]	1132	else:
	1133	msg = "Page was already Created"
[934ce649]	1134	evt = StatusEvent(status=msg, info="warning")
	1135	wx.PostEvent(self.parent, evt)
[f76bf17]	1136	except:
	1137	msg = "Creating Fit page: %s" % sys.exc_value
	1138	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error"))
	1139
	1140	def add_fit_page(self, data):
	1141	"""
	1142	given a data, ask to the fitting panel to create a new fitting page,
	1143	get this page and store it into the page_finder of this plug-in
	1144	:param data: is a list of data
	1145	"""
	1146	page = self.fit_panel.set_data(data)
	1147	# page could be None when loading state files
[a534432]	1148	if page is None:
[f76bf17]	1149	return page
	1150	#append Data1D to the panel containing its theory
	1151	#if theory already plotted
	1152	if page.uid in self.page_finder:
	1153	data = page.get_data()
	1154	theory_data = self.page_finder[page.uid].get_theory_data(data.id)
	1155	if issubclass(data.__class__, Data2D):
	1156	data.group_id = wx.NewId()
	1157	if theory_data is not None:
	1158	group_id = str(page.uid) + " Model1D"
	1159	wx.PostEvent(self.parent,
	1160	NewPlotEvent(group_id=group_id,
	1161	action="delete"))
	1162	self.parent.update_data(prev_data=theory_data,
	1163	new_data=data)
	1164	else:
	1165	if theory_data is not None:
	1166	group_id = str(page.uid) + " Model2D"
	1167	data.group_id = theory_data.group_id
	1168	wx.PostEvent(self.parent,
	1169	NewPlotEvent(group_id=group_id,
	1170	action="delete"))
	1171	self.parent.update_data(prev_data=theory_data,
	1172	new_data=data)
	1173	self.store_data(uid=page.uid, data_list=page.get_data_list(),
	1174	caption=page.window_caption)
	1175	if self.sim_page is not None and not self.batch_on:
	1176	self.sim_page.draw_page()
	1177	if self.batch_page is not None and self.batch_on:
	1178	self.batch_page.draw_page()
	1179
	1180	return page
	1181
	1182	def _onEVT_SLICER_PANEL(self, event):
	1183	"""
	1184	receive and event telling to update a panel with a name starting with
	1185	event.panel_name. this method update slicer panel
	1186	for a given interactor.
	1187
	1188	:param event: contains type of slicer , paramaters for updating
	1189	the panel and panel_name to find the slicer 's panel concerned.
	1190	"""
	1191	event.panel_name
	1192	for item in self.parent.panels:
	1193	name = event.panel_name
	1194	if self.parent.panels[item].window_caption.startswith(name):
	1195	self.parent.panels[item].set_slicer(event.type, event.params)
	1196
	1197	#self.parent._mgr.Update()
	1198
	1199	def _closed_fitpage(self, event):
	1200	"""
	1201	request fitpanel to close a given page when its unique data is removed
	1202	from the plot. close fitpage only when the a loaded data is removed
	1203	"""
	1204	if event is None or event.data is None:
	1205	return
	1206	if hasattr(event.data, "is_data"):
	1207	if not event.data.is_data or \
	1208	event.data.__class__.__name__ == "Data1D":
	1209	self.fit_panel.close_page_with_data(event.data)
	1210
	1211	def _reset_schedule_problem(self, value=0, uid=None):
	1212	"""
	1213	unschedule or schedule all fitproblem to be fit
	1214	"""
	1215	# case that uid is not specified
[a534432]	1216	if uid is None:
[f76bf17]	1217	for page_id in self.page_finder.keys():
	1218	self.page_finder[page_id].schedule_tofit(value)
	1219	# when uid is given
	1220	else:
	1221	if uid in self.page_finder.keys():
	1222	self.page_finder[uid].schedule_tofit(value)
	1223
	1224	def _add_problem_to_fit(self, fitproblem, pars, fitter, fit_id):
	1225	"""
[acf8e4a5]	1226	Create and set fitter with series of data and model
[f76bf17]	1227	"""
	1228	data = fitproblem.get_fit_data()
	1229	model = fitproblem.get_model()
	1230	smearer = fitproblem.get_smearer()
	1231	qmin, qmax = fitproblem.get_range()
	1232
	1233	#Extra list of parameters and their constraints
	1234	listOfConstraint = []
	1235	param = fitproblem.get_model_param()
	1236	if len(param) > 0:
	1237	for item in param:
	1238	## check if constraint
[a534432]	1239	if item[0] is not None and item[1] is not None:
[f76bf17]	1240	listOfConstraint.append((item[0], item[1]))
	1241	new_model = model
	1242	fitter.set_model(new_model, fit_id, pars, data=data,
	1243	constraints=listOfConstraint)
	1244	fitter.set_data(data=data, id=fit_id, smearer=smearer, qmin=qmin,
	1245	qmax=qmax)
	1246	fitter.select_problem_for_fit(id=fit_id, value=1)
	1247
	1248	def _onSelect(self, event):
	1249	"""
	1250	when Select data to fit a new page is created .Its reference is
	1251	added to self.page_finder
	1252	"""
	1253	panel = self.plot_panel
[a534432]	1254	if panel is None:
[f76bf17]	1255	raise ValueError, "Fitting:_onSelect: NonType panel"
	1256	Plugin.on_perspective(self, event=event)
	1257	self.select_data(panel)
	1258
	1259	def select_data(self, panel):
	1260	"""
	1261	"""
	1262	for plottable in panel.graph.plottables:
	1263	if plottable.__class__.__name__ in ["Data1D", "Theory1D"]:
	1264	data_id = panel.graph.selected_plottable
	1265	if plottable == panel.plots[data_id]:
	1266	data = plottable
	1267	self.add_fit_page(data=[data])
	1268	return
	1269	else:
	1270	data = plottable
	1271	self.add_fit_page(data=[data])
	1272
	1273	def update_fit(self, result=None, msg=""):
	1274	"""
	1275	"""
[a534432]	1276	print("update_fit result", result)
[f76bf17]	1277
	1278	def _batch_fit_complete(self, result, pars, page_id,
	1279	batch_outputs, batch_inputs, elapsed=None):
	1280	"""
	1281	Display fit result in batch
[acf8e4a5]	1282	:param result: list of objects received from fitters
[f76bf17]	1283	:param pars: list of fitted parameters names
	1284	:param page_id: list of page ids which called fit function
	1285	:param elapsed: time spent at the fitting level
	1286	"""
	1287	uid = page_id[0]
	1288	if uid in self.fit_thread_list.keys():
	1289	del self.fit_thread_list[uid]
	1290
[373d4ee]	1291	wx.CallAfter(self._update_fit_button, page_id)
[f76bf17]	1292	t1 = time.time()
	1293	str_time = time.strftime("%a, %d %b %Y %H:%M:%S ", time.localtime(t1))
	1294	msg = "Fit completed on %s \n" % str_time
	1295	msg += "Duration time: %s s.\n" % str(elapsed)
[934ce649]	1296	evt = StatusEvent(status=msg, info="info", type="stop")
	1297	wx.PostEvent(self.parent, evt)
[f76bf17]	1298
	1299	if batch_outputs is None:
	1300	batch_outputs = {}
	1301
	1302	# format batch_outputs
	1303	batch_outputs["Chi2"] = []
	1304	#Don't like these loops
	1305	# Need to create dictionary of all fitted parameters
	1306	# since the number of parameters can differ between each fit result
	1307	for list_res in result:
	1308	for res in list_res:
	1309	model, data = res.inputs[0]
	1310	if model is not None and hasattr(model, "model"):
	1311	model = model.model
	1312	#get all fittable parameters of the current model
	1313	for param in model.getParamList():
	1314	if param not in batch_outputs.keys():
	1315	batch_outputs[param] = []
	1316	for param in model.getDispParamList():
	1317	if not model.is_fittable(param) and \
	1318	param in batch_outputs.keys():
	1319	del batch_outputs[param]
	1320	# Add fitted parameters and their error
	1321	for param in res.param_list:
	1322	if param not in batch_outputs.keys():
	1323	batch_outputs[param] = []
	1324	err_param = "error on %s" % str(param)
	1325	if err_param not in batch_inputs.keys():
	1326	batch_inputs[err_param] = []
	1327	msg = ""
	1328	for list_res in result:
	1329	for res in list_res:
	1330	pid = res.fitter_id
	1331	model, data = res.inputs[0]
	1332	correct_result = False
	1333	if model is not None and hasattr(model, "model"):
	1334	model = model.model
	1335	if data is not None and hasattr(data, "sas_data"):
	1336	data = data.sas_data
	1337
	1338	is_data2d = issubclass(data.__class__, Data2D)
[0900627]	1339	# Check consistency of arrays
[f76bf17]	1340	if not is_data2d:
	1341	if len(res.theory) == len(res.index[res.index]) and \
	1342	len(res.index) == len(data.y):
	1343	correct_result = True
	1344	else:
	1345	copy_data = deepcopy(data)
	1346	new_theory = copy_data.data
	1347	new_theory[res.index] = res.theory
[9a5097c]	1348	new_theory[res.index == False] = np.nan
[f76bf17]	1349	correct_result = True
[0900627]	1350	# Get all fittable parameters of the current model
[f76bf17]	1351	param_list = model.getParamList()
	1352	for param in model.getDispParamList():
[c4170068]	1353	if '.' in param and param in param_list:
[0900627]	1354	# Ensure polydispersity results are displayed
[c4170068]	1355	p1, p2 = param.split('.')
	1356	if not model.is_fittable(p1) and not (p2 == 'width' and param in res.param_list)\
	1357	and param in param_list:
	1358	param_list.remove(param)
	1359	elif not model.is_fittable(param) and \
[f76bf17]	1360	param in param_list:
	1361	param_list.remove(param)
	1362	if not correct_result or res.fitness is None or \
[9a5097c]	1363	not np.isfinite(res.fitness) or \
[a534432]	1364	np.any(res.pvec is None) or not \
[9a5097c]	1365	np.all(np.isfinite(res.pvec)):
[f76bf17]	1366	data_name = str(None)
	1367	if data is not None:
	1368	data_name = str(data.name)
	1369	model_name = str(None)
	1370	if model is not None:
	1371	model_name = str(model.name)
	1372	msg += "Data %s and Model %s did not fit.\n" % (data_name,
	1373	model_name)
[9a5097c]	1374	ERROR = np.NAN
[f76bf17]	1375	cell = BatchCell()
	1376	cell.label = res.fitness
	1377	cell.value = res.fitness
	1378	batch_outputs["Chi2"].append(ERROR)
	1379	for param in param_list:
[0900627]	1380	# Save value of fixed parameters
[f76bf17]	1381	if param not in res.param_list:
	1382	batch_outputs[str(param)].append(ERROR)
	1383	else:
[0900627]	1384	# Save only fitted values
[f76bf17]	1385	batch_outputs[param].append(ERROR)
	1386	batch_inputs["error on %s" % str(param)].append(ERROR)
	1387	else:
[9a5097c]	1388	# TODO: Why sometimes res.pvec comes with np.float64?
[acf8e4a5]	1389	# probably from scipy lmfit
[9a5097c]	1390	if res.pvec.__class__ == np.float64:
[f76bf17]	1391	res.pvec = [res.pvec]
	1392
	1393	cell = BatchCell()
	1394	cell.label = res.fitness
	1395	cell.value = res.fitness
	1396	batch_outputs["Chi2"].append(cell)
	1397	# add parameters to batch_results
	1398	for param in param_list:
	1399	# save value of fixed parameters
	1400	if param not in res.param_list:
	1401	batch_outputs[str(param)].append(model.getParam(param))
	1402	else:
	1403	index = res.param_list.index(param)
	1404	#save only fitted values
	1405	batch_outputs[param].append(res.pvec[index])
	1406	if res.stderr is not None and \
	1407	len(res.stderr) == len(res.param_list):
	1408	item = res.stderr[index]
	1409	batch_inputs["error on %s" % param].append(item)
	1410	else:
	1411	batch_inputs["error on %s" % param].append('-')
	1412	model.setParam(param, res.pvec[index])
	1413	#fill the batch result with emtpy value if not in the current
	1414	#model
	1415	EMPTY = "-"
	1416	for key in batch_outputs.keys():
	1417	if key not in param_list and key not in ["Chi2", "Data"]:
	1418	batch_outputs[key].append(EMPTY)
	1419
	1420	self.page_finder[pid].set_batch_result(batch_inputs=batch_inputs,
	1421	batch_outputs=batch_outputs)
	1422
	1423	cpage = self.fit_panel.get_page_by_id(pid)
	1424	cpage._on_fit_complete()
	1425	self.page_finder[pid][data.id].set_result(res)
	1426	fitproblem = self.page_finder[pid][data.id]
	1427	qmin, qmax = fitproblem.get_range()
	1428	plot_result = False
	1429	if correct_result:
	1430	if not is_data2d:
	1431	self._complete1D(x=data.x[res.index], y=res.theory, page_id=pid,
	1432	elapsed=None,
	1433	index=res.index, model=model,
	1434	weight=None, fid=data.id,
	1435	toggle_mode_on=False, state=None,
	1436	data=data, update_chisqr=False,
	1437	source='fit', plot_result=plot_result)
	1438	else:
	1439	self._complete2D(image=new_theory, data=data,
	1440	model=model,
	1441	page_id=pid, elapsed=None,
	1442	index=res.index,
	1443	qmin=qmin,
	1444	qmax=qmax, fid=data.id, weight=None,
	1445	toggle_mode_on=False, state=None,
	1446	update_chisqr=False,
	1447	source='fit', plot_result=plot_result)
	1448	self.on_set_batch_result(page_id=pid,
	1449	fid=data.id,
	1450	batch_outputs=batch_outputs,
	1451	batch_inputs=batch_inputs)
	1452
[934ce649]	1453	evt = StatusEvent(status=msg, error="info", type="stop")
	1454	wx.PostEvent(self.parent, evt)
[f76bf17]	1455	# Remove parameters that are not shown
	1456	cpage = self.fit_panel.get_page_by_id(uid)
	1457	tbatch_outputs = {}
	1458	shownkeystr = cpage.get_copy_params()
	1459	for key in batch_outputs.keys():
	1460	if key in ["Chi2", "Data"] or shownkeystr.count(key) > 0:
	1461	tbatch_outputs[key] = batch_outputs[key]
	1462
	1463	wx.CallAfter(self.parent.on_set_batch_result, tbatch_outputs,
	1464	batch_inputs, self.sub_menu)
	1465
	1466	def on_set_batch_result(self, page_id, fid, batch_outputs, batch_inputs):
	1467	"""
	1468	"""
	1469	pid = page_id
	1470	if fid not in self.page_finder[pid]:
	1471	return
	1472	fitproblem = self.page_finder[pid][fid]
	1473	index = self.page_finder[pid].nbr_residuals_computed - 1
	1474	residuals = fitproblem.get_residuals()
	1475	theory_data = fitproblem.get_theory_data()
	1476	data = fitproblem.get_fit_data()
	1477	model = fitproblem.get_model()
	1478	#fill batch result information
	1479	if "Data" not in batch_outputs.keys():
	1480	batch_outputs["Data"] = []
[d85c194]	1481	from sas.sasgui.guiframe.data_processor import BatchCell
[f76bf17]	1482	cell = BatchCell()
	1483	cell.label = data.name
	1484	cell.value = index
	1485
[a534432]	1486	if theory_data is not None:
[f76bf17]	1487	#Suucessful fit
	1488	theory_data.id = wx.NewId()
	1489	theory_data.name = model.name + "[%s]" % str(data.name)
	1490	if issubclass(theory_data.__class__, Data2D):
	1491	group_id = wx.NewId()
	1492	theory_data.group_id = group_id
	1493	if group_id not in theory_data.list_group_id:
	1494	theory_data.list_group_id.append(group_id)
	1495
	1496	try:
	1497	# associate residuals plot
	1498	if issubclass(residuals.__class__, Data2D):
	1499	group_id = wx.NewId()
	1500	residuals.group_id = group_id
	1501	if group_id not in residuals.list_group_id:
	1502	residuals.list_group_id.append(group_id)
	1503	batch_outputs["Chi2"][index].object = [residuals]
	1504	except:
	1505	pass
	1506
	1507	cell.object = [data, theory_data]
	1508	batch_outputs["Data"].append(cell)
	1509	for key, value in data.meta_data.iteritems():
	1510	if key not in batch_inputs.keys():
	1511	batch_inputs[key] = []
	1512	#if key.lower().strip() != "loader":
	1513	batch_inputs[key].append(value)
	1514	param = "temperature"
	1515	if hasattr(data.sample, param):
	1516	if param not in batch_inputs.keys():
	1517	batch_inputs[param] = []
	1518	batch_inputs[param].append(data.sample.temperature)
	1519
	1520	def _fit_completed(self, result, page_id, batch_outputs,
	1521	batch_inputs=None, pars=None, elapsed=None):
	1522	"""
	1523	Display result of the fit on related panel(s).
	1524	:param result: list of object generated when fit ends
	1525	:param pars: list of names of parameters fitted
	1526	:param page_id: list of page ids which called fit function
	1527	:param elapsed: time spent at the fitting level
	1528	"""
	1529	t1 = time.time()
	1530	str_time = time.strftime("%a, %d %b %Y %H:%M:%S ", time.localtime(t1))
	1531	msg = "Fit completed on %s \n" % str_time
	1532	msg += "Duration time: %s s.\n" % str(elapsed)
[934ce649]	1533	evt = StatusEvent(status=msg, info="info", type="stop")
	1534	wx.PostEvent(self.parent, evt)
[f76bf17]	1535	wx.PostEvent(self.result_panel, PlotResultEvent(result=result))
[373d4ee]	1536	wx.CallAfter(self._update_fit_button, page_id)
[f76bf17]	1537	result = result[0]
	1538	self.fit_thread_list = {}
	1539	if page_id is None:
	1540	page_id = []
	1541	## fit more than 1 model at the same time
	1542	try:
	1543	index = 0
[aac161f1]	1544	# Update potential simfit page(s)
	1545	if self.sim_page is not None:
	1546	self.sim_page._on_fit_complete()
	1547	if self.batch_page:
	1548	self.batch_page._on_fit_complete()
	1549	# Update all fit pages
[f76bf17]	1550	for uid in page_id:
	1551	res = result[index]
[1a5d5f2]	1552	fit_msg = res.mesg
[f76bf17]	1553	if res.fitness is None or \
[9a5097c]	1554	not np.isfinite(res.fitness) or \
[a534432]	1555	np.any(res.pvec is None) or \
[9a5097c]	1556	not np.all(np.isfinite(res.pvec)):
[1a5d5f2]	1557	fit_msg += "\nFitting did not converge!!!"
[373d4ee]	1558	wx.CallAfter(self._update_fit_button, page_id)
[f76bf17]	1559	else:
	1560	#set the panel when fit result are float not list
[9a5097c]	1561	if res.pvec.__class__ == np.float64:
[f76bf17]	1562	pvec = [res.pvec]
	1563	else:
	1564	pvec = res.pvec
[9a5097c]	1565	if res.stderr.__class__ == np.float64:
[f76bf17]	1566	stderr = [res.stderr]
	1567	else:
	1568	stderr = res.stderr
	1569	cpage = self.fit_panel.get_page_by_id(uid)
	1570	# Make sure we got all results
	1571	#(CallAfter is important to MAC)
	1572	try:
[a534432]	1573	#if res is not None:
[f76bf17]	1574	wx.CallAfter(cpage.onsetValues, res.fitness,
	1575	res.param_list,
	1576	pvec, stderr)
	1577	index += 1
	1578	wx.CallAfter(cpage._on_fit_complete)
	1579	except KeyboardInterrupt:
[1a5d5f2]	1580	fit_msg += "\nSingular point: Fitting stopped."
[f76bf17]	1581	except:
[1a5d5f2]	1582	fit_msg += "\nSingular point: Fitting error occurred."
	1583	if fit_msg:
	1584	evt = StatusEvent(status=fit_msg, info="warning", type="stop")
	1585	wx.PostEvent(self.parent, evt)
[f76bf17]	1586
	1587	except:
[e1442d4]	1588	msg = ("Fit completed but the following error occurred: %s"
	1589	% sys.exc_value)
	1590	#import traceback; msg = "\n".join((traceback.format_exc(), msg))
[934ce649]	1591	evt = StatusEvent(status=msg, info="warning", type="stop")
	1592	wx.PostEvent(self.parent, evt)
[f76bf17]	1593
	1594	def _update_fit_button(self, page_id):
	1595	"""
	1596	Update Fit button when fit stopped
	1597
	1598	: parameter page_id: fitpage where the button is
	1599	"""
	1600	if page_id.__class__.__name__ != 'list':
	1601	page_id = [page_id]
	1602	for uid in page_id:
	1603	page = self.fit_panel.get_page_by_id(uid)
	1604	page._on_fit_complete()
	1605
	1606	def _on_show_panel(self, event):
	1607	"""
	1608	"""
	1609	pass
	1610
	1611	def on_reset_batch_flag(self, event):
	1612	"""
	1613	Set batch_reset_flag
	1614	"""
	1615	event.Skip()
[a534432]	1616	if self.menu1 is None:
[f76bf17]	1617	return
	1618	menu_item = self.menu1.FindItemById(self.id_reset_flag)
	1619	flag = menu_item.IsChecked()
	1620	if not flag:
	1621	menu_item.Check(False)
	1622	self.batch_reset_flag = True
	1623	else:
	1624	menu_item.Check(True)
	1625	self.batch_reset_flag = False
	1626
	1627	## post a message to status bar
	1628	msg = "Set Chain Fitting: %s" % str(not self.batch_reset_flag)
[934ce649]	1629	wx.PostEvent(self.parent, StatusEvent(status=msg))
[f76bf17]	1630
	1631
	1632	def _on_slicer_event(self, event):
	1633	"""
	1634	Receive a panel as event and send it to guiframe
	1635
	1636	:param event: event containing a panel
	1637
	1638	"""
	1639	if event.panel is not None:
	1640	self.slicer_panels.append(event.panel)
	1641	# Set group ID if available
	1642	event_id = self.parent.popup_panel(event.panel)
	1643	event.panel.uid = event_id
	1644	self.mypanels.append(event.panel)
	1645
	1646	def _onclearslicer(self, event):
	1647	"""
	1648	Clear the boxslicer when close the panel associate with this slicer
	1649	"""
	1650	name = event.GetEventObject().frame.GetTitle()
	1651	for panel in self.slicer_panels:
	1652	if panel.window_caption == name:
	1653
	1654	for item in self.parent.panels:
	1655	if hasattr(self.parent.panels[item], "uid"):
	1656	if self.parent.panels[item].uid == panel.base.uid:
	1657	self.parent.panels[item].onClearSlicer(event)
	1658	#self.parent._mgr.Update()
	1659	break
	1660	break
	1661
	1662	def _on_model_panel(self, evt):
	1663	"""
	1664	react to model selection on any combo box or model menu.plot the model
	1665
	1666	:param evt: wx.combobox event
	1667
	1668	"""
	1669	model = evt.model
	1670	uid = evt.uid
	1671	qmin = evt.qmin
	1672	qmax = evt.qmax
	1673	caption = evt.caption
	1674	enable_smearer = evt.enable_smearer
[a534432]	1675	if model is None:
[f76bf17]	1676	return
	1677	if uid not in self.page_finder.keys():
	1678	return
	1679	# save the name containing the data name with the appropriate model
	1680	self.page_finder[uid].set_model(model)
	1681	self.page_finder[uid].enable_smearing(enable_smearer)
	1682	self.page_finder[uid].set_range(qmin=qmin, qmax=qmax)
	1683	self.page_finder[uid].set_fit_tab_caption(caption=caption)
	1684	if self.sim_page is not None and not self.batch_on:
	1685	self.sim_page.draw_page()
	1686	if self.batch_page is not None and self.batch_on:
	1687	self.batch_page.draw_page()
	1688
	1689	def _update1D(self, x, output):
	1690	"""
	1691	Update the output of plotting model 1D
	1692	"""
	1693	msg = "Plot updating ... "
	1694	wx.PostEvent(self.parent, StatusEvent(status=msg, type="update"))
	1695
[c807957]	1696	def create_theory_1D(self, x, y, page_id, model, data, state,
[804fefa]	1697	data_description, data_id, dy=None):
[c807957]	1698	"""
	1699	Create a theory object associate with an existing Data1D
	1700	and add it to the data manager.
	1701	@param x: x-values of the data
	1702	@param y: y_values of the data
	1703	@param page_id: fit page ID
	1704	@param model: model used for fitting
	1705	@param data: Data1D object to create the theory for
	1706	@param state: model state
	1707	@param data_description: title to use in the data manager
	1708	@param data_id: unique data ID
	1709	"""
	1710	new_plot = Data1D(x=x, y=y)
[6a0c75d1]	1711	if dy is None:
	1712	new_plot.is_data = False
[9a5097c]	1713	new_plot.dy = np.zeros(len(y))
[6a0c75d1]	1714	# If this is a theory curve, pick the proper symbol to make it a curve
	1715	new_plot.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM
	1716	else:
	1717	new_plot.is_data = True
	1718	new_plot.dy = dy
[804fefa]	1719	new_plot.interactive = True
	1720	new_plot.dx = None
	1721	new_plot.dxl = None
	1722	new_plot.dxw = None
[c807957]	1723	_yaxis, _yunit = data.get_yaxis()
	1724	_xaxis, _xunit = data.get_xaxis()
	1725	new_plot.title = data.name
	1726	new_plot.group_id = data.group_id
[a534432]	1727	if new_plot.group_id is None:
[c807957]	1728	new_plot.group_id = data.group_id
	1729	new_plot.id = data_id
	1730	# Find if this theory was already plotted and replace that plot given
	1731	# the same id
	1732	self.page_finder[page_id].get_theory_data(fid=data.id)
	1733
	1734	if data.is_data:
	1735	data_name = str(data.name)
	1736	else:
	1737	data_name = str(model.__class__.__name__)
	1738
	1739	new_plot.name = data_description + " [" + data_name + "]"
	1740	new_plot.xaxis(_xaxis, _xunit)
	1741	new_plot.yaxis(_yaxis, _yunit)
	1742	self.page_finder[page_id].set_theory_data(data=new_plot,
	1743	fid=data.id)
	1744	self.parent.update_theory(data_id=data.id, theory=new_plot,
	1745	state=state)
	1746	return new_plot
	1747
[f76bf17]	1748	def _complete1D(self, x, y, page_id, elapsed, index, model,
	1749	weight=None, fid=None,
	1750	toggle_mode_on=False, state=None,
	1751	data=None, update_chisqr=True,
[804fefa]	1752	source='model', plot_result=True,
	1753	unsmeared_model=None, unsmeared_data=None,
[ca4d985]	1754	unsmeared_error=None, sq_model=None, pq_model=None):
[f76bf17]	1755	"""
[c807957]	1756	Complete plotting 1D data
	1757	@param unsmeared_model: fit model, without smearing
[804fefa]	1758	@param unsmeared_data: data, rescaled to unsmeared model
[edbe974]	1759	@param unsmeared_error: data error, rescaled to unsmeared model
[f76bf17]	1760	"""
[489f53a]	1761	number_finite = np.count_nonzero(np.isfinite(y))
[a534432]	1762	np.nan_to_num(y)
	1763	new_plot = self.create_theory_1D(x, y, page_id, model, data, state,
	1764	data_description=model.name,
	1765	data_id=str(page_id) + " " + data.name)
[2d9526d]	1766	plots_to_update = [] # List of plottables that have changed since last calculation
	1767	# Create the new theories
[a534432]	1768	if unsmeared_model is not None:
[2d9526d]	1769	unsmeared_model_plot = self.create_theory_1D(x, unsmeared_model,
	1770	page_id, model, data, state,
[a534432]	1771	data_description=model.name + " unsmeared",
	1772	data_id=str(page_id) + " " + data.name + " unsmeared")
[2d9526d]	1773	plots_to_update.append(unsmeared_model_plot)
[a534432]	1774
	1775	if unsmeared_data is not None and unsmeared_error is not None:
[2d9526d]	1776	unsmeared_data_plot = self.create_theory_1D(x, unsmeared_data,
	1777	page_id, model, data, state,
[a534432]	1778	data_description="Data unsmeared",
	1779	data_id="Data " + data.name + " unsmeared",
	1780	dy=unsmeared_error)
[2d9526d]	1781	plots_to_update.append(unsmeared_data_plot)
[e61a9b1]	1782	if sq_model is not None and pq_model is not None:
[467068d]	1783	sq_id = str(page_id) + " " + data.name + " S(q)"
	1784	sq_plot = self.create_theory_1D(x, sq_model, page_id, model, data, state,
[e61a9b1]	1785	data_description=model.name + " S(q)",
[467068d]	1786	data_id=sq_id)
[2d9526d]	1787	plots_to_update.append(sq_plot)
[467068d]	1788	pq_id = str(page_id) + " " + data.name + " P(q)"
	1789	pq_plot = self.create_theory_1D(x, pq_model, page_id, model, data, state,
[e61a9b1]	1790	data_description=model.name + " P(q)",
[467068d]	1791	data_id=pq_id)
[2d9526d]	1792	plots_to_update.append(pq_plot)
	1793	# Update the P(Q), S(Q) and unsmeared theory plots if they exist
	1794	wx.PostEvent(self.parent, NewPlotEvent(plots=plots_to_update,
	1795	action='update'))
[a534432]	1796
	1797	current_pg = self.fit_panel.get_page_by_id(page_id)
	1798	title = new_plot.title
	1799	batch_on = self.fit_panel.get_page_by_id(page_id).batch_on
	1800	if not batch_on:
	1801	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title=str(title)))
	1802	elif plot_result:
	1803	top_data_id = self.fit_panel.get_page_by_id(page_id).data.id
	1804	if data.id == top_data_id:
	1805	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title=str(title)))
	1806	caption = current_pg.window_caption
	1807	self.page_finder[page_id].set_fit_tab_caption(caption=caption)
	1808
	1809	self.page_finder[page_id].set_theory_data(data=new_plot,
[f76bf17]	1810	fid=data.id)
[a534432]	1811	if toggle_mode_on:
	1812	wx.PostEvent(self.parent,
	1813	NewPlotEvent(group_id=str(page_id) + " Model2D",
[f76bf17]	1814	action="Hide"))
[a534432]	1815	else:
	1816	if update_chisqr:
	1817	wx.PostEvent(current_pg,
	1818	Chi2UpdateEvent(output=self._cal_chisqr(
[f76bf17]	1819	data=data,
	1820	fid=fid,
	1821	weight=weight,
[a534432]	1822	page_id=page_id,
	1823	index=index)))
	1824	else:
	1825	self._plot_residuals(page_id=page_id, data=data, fid=fid,
	1826	index=index, weight=weight)
[f76bf17]	1827
[a534432]	1828	if not number_finite:
	1829	logger.error("Using the present parameters the model does not return any finite value. ")
	1830	msg = "Computing Error: Model did not return any finite value."
	1831	wx.PostEvent(self.parent, StatusEvent(status = msg, info="error"))
[489f53a]	1832	else:
[a534432]	1833	msg = "Computation completed!"
[82373f5]	1834	if number_finite != y.size:
[5f768c2]	1835	msg += ' PROBLEM: For some Q values the model returns non finite intensities!'
	1836	logger.error("For some Q values the model returns non finite intensities.")
[f76bf17]	1837	wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop"))
	1838
[934ce649]	1839	def _calc_exception(self, etype, value, tb):
	1840	"""
	1841	Handle exception from calculator by posting it as an error.
	1842	"""
[c155a16]	1843	logger.error("".join(traceback.format_exception(etype, value, tb)))
[934ce649]	1844	msg = traceback.format_exception(etype, value, tb, limit=1)
	1845	evt = StatusEvent(status="".join(msg), type="stop", info="error")
	1846	wx.PostEvent(self.parent, evt)
	1847
[f76bf17]	1848	def _update2D(self, output, time=None):
	1849	"""
	1850	Update the output of plotting model
	1851	"""
[934ce649]	1852	msg = "Plot updating ... "
	1853	wx.PostEvent(self.parent, StatusEvent(msg, type="update"))
[f76bf17]	1854
	1855	def _complete2D(self, image, data, model, page_id, elapsed, index, qmin,
	1856	qmax, fid=None, weight=None, toggle_mode_on=False, state=None,
	1857	update_chisqr=True, source='model', plot_result=True):
	1858	"""
	1859	Complete get the result of modelthread and create model 2D
	1860	that can be plot.
	1861	"""
[489f53a]	1862	number_finite = np.count_nonzero(np.isfinite(image))
[9a5097c]	1863	np.nan_to_num(image)
[f76bf17]	1864	new_plot = Data2D(image=image, err_image=data.err_data)
	1865	new_plot.name = model.name + '2d'
	1866	new_plot.title = "Analytical model 2D "
	1867	new_plot.id = str(page_id) + " " + data.name
	1868	new_plot.group_id = str(page_id) + " Model2D"
	1869	new_plot.detector = data.detector
	1870	new_plot.source = data.source
	1871	new_plot.is_data = False
	1872	new_plot.qx_data = data.qx_data
	1873	new_plot.qy_data = data.qy_data
	1874	new_plot.q_data = data.q_data
	1875	new_plot.mask = data.mask
	1876	## plot boundaries
	1877	new_plot.ymin = data.ymin
	1878	new_plot.ymax = data.ymax
	1879	new_plot.xmin = data.xmin
	1880	new_plot.xmax = data.xmax
	1881	title = data.title
	1882
	1883	new_plot.is_data = False
	1884	if data.is_data:
	1885	data_name = str(data.name)
	1886	else:
	1887	data_name = str(model.__class__.__name__) + '2d'
	1888
	1889	if len(title) > 1:
	1890	new_plot.title = "Model2D for %s " % model.name + data_name
	1891	new_plot.name = model.name + " [" + \
	1892	data_name + "]"
	1893	theory_data = deepcopy(new_plot)
	1894
	1895	self.page_finder[page_id].set_theory_data(data=theory_data,
	1896	fid=data.id)
	1897	self.parent.update_theory(data_id=data.id,
	1898	theory=new_plot,
	1899	state=state)
	1900	current_pg = self.fit_panel.get_page_by_id(page_id)
	1901	title = new_plot.title
	1902	if not source == 'fit' and plot_result:
	1903	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot,
	1904	title=title))
	1905	if toggle_mode_on:
	1906	wx.PostEvent(self.parent,
	1907	NewPlotEvent(group_id=str(page_id) + " Model1D",
	1908	action="Hide"))
	1909	else:
	1910	# Chisqr in fitpage
	1911	if update_chisqr:
	1912	wx.PostEvent(current_pg,
	1913	Chi2UpdateEvent(output=self._cal_chisqr(data=data,
	1914	weight=weight,
	1915	fid=fid,
	1916	page_id=page_id,
	1917	index=index)))
	1918	else:
	1919	self._plot_residuals(page_id=page_id, data=data, fid=fid,
	1920	index=index, weight=weight)
[a534432]	1921
	1922	if not number_finite:
	1923	logger.error("Using the present parameters the model does not return any finite value. ")
	1924	msg = "Computing Error: Model did not return any finite value."
	1925	wx.PostEvent(self.parent, StatusEvent(status = msg, info="error"))
	1926	else:
	1927	msg = "Computation completed!"
	1928	if number_finite != image.size:
	1929	msg += ' PROBLEM: For some Qx,Qy values the model returns non finite intensities!'
	1930	logger.error("For some Qx,Qy values the model returns non finite intensities.")
	1931	wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop"))
[f76bf17]	1932
	1933	def _draw_model2D(self, model, page_id, qmin,
	1934	qmax,
	1935	data=None, smearer=None,
	1936	description=None, enable2D=False,
	1937	state=None,
	1938	fid=None,
	1939	weight=None,
	1940	toggle_mode_on=False,
	1941	update_chisqr=True, source='model'):
	1942	"""
	1943	draw model in 2D
	1944
	1945	:param model: instance of the model to draw
	1946	:param description: the description of the model
	1947	:param enable2D: when True allows to draw model 2D
	1948	:param qmin: the minimum value to draw model 2D
	1949	:param qmax: the maximum value to draw model 2D
	1950	:param qstep: the number of division of Qx and Qy of the model to draw
	1951
	1952	"""
	1953	if not enable2D:
	1954	return None
	1955	try:
	1956	from model_thread import Calc2D
	1957	## If a thread is already started, stop it
	1958	if (self.calc_2D is not None) and self.calc_2D.isrunning():
	1959	self.calc_2D.stop()
	1960	## stop just raises a flag to tell the thread to kill
	1961	## itself -- see the fix in Calc1D implemented to fix
	1962	## an actual problem. Seems the fix should also go here
	1963	## and may be the cause of other noted instabilities
	1964	##
[489f53a]	1965	## -PDB August 12, 2014
[f76bf17]	1966	while self.calc_2D.isrunning():
	1967	time.sleep(0.1)
	1968	self.calc_2D = Calc2D(model=model,
[934ce649]	1969	data=data,
	1970	page_id=page_id,
	1971	smearer=smearer,
	1972	qmin=qmin,
	1973	qmax=qmax,
	1974	weight=weight,
	1975	fid=fid,
	1976	toggle_mode_on=toggle_mode_on,
	1977	state=state,
	1978	completefn=self._complete2D,
	1979	update_chisqr=update_chisqr,
	1980	exception_handler=self._calc_exception,
	1981	source=source)
[f76bf17]	1982	self.calc_2D.queue()
	1983	except:
	1984	raise
	1985
	1986	def _draw_model1D(self, model, page_id, data,
	1987	qmin, qmax, smearer=None,
	1988	state=None,
	1989	weight=None,
	1990	fid=None,
	1991	toggle_mode_on=False, update_chisqr=True, source='model',
	1992	enable1D=True):
	1993	"""
	1994	Draw model 1D from loaded data1D
	1995
	1996	:param data: loaded data
	1997	:param model: the model to plot
	1998
	1999	"""
	2000	if not enable1D:
	2001	return
	2002	try:
	2003	from model_thread import Calc1D
	2004	## If a thread is already started, stop it
	2005	if (self.calc_1D is not None) and self.calc_1D.isrunning():
	2006	self.calc_1D.stop()
[489f53a]	2007	## stop just raises the flag -- the thread is supposed to
[f76bf17]	2008	## then kill itself but cannot. Paul Kienzle came up with
	2009	## this fix to prevent threads from stepping on each other
[ddbac66]	2010	## which was causing a simple custom plugin model to crash
	2011	##Sasview.
[f76bf17]	2012	## We still don't know why the fit sometimes lauched a second
	2013	## thread -- something which should also be investigated.
	2014	## The thread approach was implemented in order to be able
	2015	## to lauch a computation in a separate thread from the GUI so
	2016	## that the GUI can still respond to user input including
	2017	## a request to stop the computation.
	2018	## It seems thus that the whole thread approach used here
[489f53a]	2019	## May need rethinking
[f76bf17]	2020	##
[d99f008]	2021	## -PDB August 12, 2014
[f76bf17]	2022	while self.calc_1D.isrunning():
	2023	time.sleep(0.1)
	2024	self.calc_1D = Calc1D(data=data,
	2025	model=model,
	2026	page_id=page_id,
	2027	qmin=qmin,
	2028	qmax=qmax,
	2029	smearer=smearer,
	2030	state=state,
	2031	weight=weight,
	2032	fid=fid,
	2033	toggle_mode_on=toggle_mode_on,
	2034	completefn=self._complete1D,
	2035	#updatefn = self._update1D,
	2036	update_chisqr=update_chisqr,
[934ce649]	2037	exception_handler=self._calc_exception,
[f76bf17]	2038	source=source)
	2039	self.calc_1D.queue()
	2040	except:
	2041	msg = " Error occurred when drawing %s Model 1D: " % model.name
	2042	msg += " %s" % sys.exc_value
	2043	wx.PostEvent(self.parent, StatusEvent(status=msg))
	2044
	2045	def _cal_chisqr(self, page_id, data, weight, fid=None, index=None):
	2046	"""
	2047	Get handy Chisqr using the output from draw1D and 2D,
	2048	instead of calling expansive CalcChisqr in guithread
	2049	"""
	2050	try:
	2051	data_copy = deepcopy(data)
	2052	except:
	2053	return
	2054	# default chisqr
	2055	chisqr = None
	2056	#to compute chisq make sure data has valid data
[a534432]	2057	# return None if data is None
	2058	if not check_data_validity(data_copy) or data_copy is None:
[f76bf17]	2059	return chisqr
	2060
	2061	# Get data: data I, theory I, and data dI in order
	2062	if data_copy.__class__.__name__ == "Data2D":
[a534432]	2063	if index is None:
[9a5097c]	2064	index = np.ones(len(data_copy.data), dtype=bool)
[a534432]	2065	if weight is not None:
[f76bf17]	2066	data_copy.err_data = weight
	2067	# get rid of zero error points
	2068	index = index & (data_copy.err_data != 0)
[9a5097c]	2069	index = index & (np.isfinite(data_copy.data))
[f76bf17]	2070	fn = data_copy.data[index]
	2071	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
[a534432]	2072	if theory_data is None:
[f76bf17]	2073	return chisqr
	2074	gn = theory_data.data[index]
	2075	en = data_copy.err_data[index]
	2076	else:
	2077	# 1 d theory from model_thread is only in the range of index
[a534432]	2078	if index is None:
[9a5097c]	2079	index = np.ones(len(data_copy.y), dtype=bool)
[a534432]	2080	if weight is not None:
[f76bf17]	2081	data_copy.dy = weight
[a534432]	2082	if data_copy.dy is None or data_copy.dy == []:
[9a5097c]	2083	dy = np.ones(len(data_copy.y))
[f76bf17]	2084	else:
[acf8e4a5]	2085	## Set consistently w/AbstractFitengine:
[f76bf17]	2086	# But this should be corrected later.
	2087	dy = deepcopy(data_copy.dy)
	2088	dy[dy == 0] = 1
	2089	fn = data_copy.y[index]
	2090
	2091	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
[a534432]	2092	if theory_data is None:
[f76bf17]	2093	return chisqr
	2094	gn = theory_data.y
	2095	en = dy[index]
	2096
	2097	# residual
	2098	try:
	2099	res = (fn - gn) / en
	2100	except ValueError:
[a534432]	2101	print("Unmatch lengths %s, %s, %s" % (len(fn), len(gn), len(en)))
[f76bf17]	2102	return
	2103
[9a5097c]	2104	residuals = res[np.isfinite(res)]
[f76bf17]	2105	# get chisqr only w/finite
[9a5097c]	2106	chisqr = np.average(residuals * residuals)
[f76bf17]	2107
	2108	self._plot_residuals(page_id=page_id, data=data_copy,
	2109	fid=fid,
	2110	weight=weight, index=index)
	2111
	2112	return chisqr
	2113
	2114	def _plot_residuals(self, page_id, weight, fid=None,
	2115	data=None, index=None):
	2116	"""
	2117	Plot the residuals
	2118
	2119	:param data: data
	2120	:param index: index array (bool)
	2121	: Note: this is different from the residuals in cal_chisqr()
	2122	"""
	2123	data_copy = deepcopy(data)
	2124	# Get data: data I, theory I, and data dI in order
	2125	if data_copy.__class__.__name__ == "Data2D":
	2126	# build residuals
	2127	residuals = Data2D()
	2128	#residuals.copy_from_datainfo(data)
	2129	# Not for trunk the line below, instead use the line above
	2130	data_copy.clone_without_data(len(data_copy.data), residuals)
	2131	residuals.data = None
	2132	fn = data_copy.data
	2133	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
	2134	gn = theory_data.data
[a534432]	2135	if weight is None:
[f76bf17]	2136	en = data_copy.err_data
	2137	else:
	2138	en = weight
	2139	residuals.data = (fn - gn) / en
	2140	residuals.qx_data = data_copy.qx_data
	2141	residuals.qy_data = data_copy.qy_data
	2142	residuals.q_data = data_copy.q_data
[9a5097c]	2143	residuals.err_data = np.ones(len(residuals.data))
[f76bf17]	2144	residuals.xmin = min(residuals.qx_data)
	2145	residuals.xmax = max(residuals.qx_data)
	2146	residuals.ymin = min(residuals.qy_data)
	2147	residuals.ymax = max(residuals.qy_data)
	2148	residuals.q_data = data_copy.q_data
	2149	residuals.mask = data_copy.mask
	2150	residuals.scale = 'linear'
	2151	# check the lengths
	2152	if len(residuals.data) != len(residuals.q_data):
	2153	return
	2154	else:
	2155	# 1 d theory from model_thread is only in the range of index
[a534432]	2156	if data_copy.dy is None or data_copy.dy == []:
[9a5097c]	2157	dy = np.ones(len(data_copy.y))
[f76bf17]	2158	else:
[a534432]	2159	if weight is None:
[9a5097c]	2160	dy = np.ones(len(data_copy.y))
[f76bf17]	2161	## Set consitently w/AbstractFitengine:
	2162	## But this should be corrected later.
	2163	else:
	2164	dy = weight
	2165	dy[dy == 0] = 1
	2166	fn = data_copy.y[index]
	2167	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
	2168	gn = theory_data.y
	2169	en = dy[index]
	2170	# build residuals
	2171	residuals = Data1D()
	2172	try:
	2173	residuals.y = (fn - gn) / en
	2174	except:
	2175	msg = "ResidualPlot Error: different # of data points in theory"
	2176	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error"))
	2177	residuals.y = (fn - gn[index]) / en
	2178	residuals.x = data_copy.x[index]
[9a5097c]	2179	residuals.dy = np.ones(len(residuals.y))
[f76bf17]	2180	residuals.dx = None
	2181	residuals.dxl = None
	2182	residuals.dxw = None
	2183	residuals.ytransform = 'y'
[489f53a]	2184	# For latter scale changes
[f76bf17]	2185	residuals.xaxis('\\rm{Q} ', 'A^{-1}')
	2186	residuals.yaxis('\\rm{Residuals} ', 'normalized')
	2187	theory_name = str(theory_data.name.split()[0])
	2188	new_plot = residuals
	2189	new_plot.name = "Residuals for " + str(theory_name) + "[" + \
	2190	str(data.name) + "]"
	2191	## allow to highlight data when plotted
	2192	new_plot.interactive = True
	2193	## when 2 data have the same id override the 1 st plotted
	2194	new_plot.id = "res" + str(data_copy.id) + str(theory_name)
	2195	##group_id specify on which panel to plot this data
	2196	group_id = self.page_finder[page_id].get_graph_id()
[a534432]	2197	if group_id is None:
[f76bf17]	2198	group_id = data.group_id
	2199	new_plot.group_id = "res" + str(group_id)
	2200	#new_plot.is_data = True
	2201	##post data to plot
	2202	title = new_plot.name
	2203	self.page_finder[page_id].set_residuals(residuals=new_plot,
	2204	fid=data.id)
	2205	self.parent.update_theory(data_id=data.id, theory=new_plot)
	2206	batch_on = self.fit_panel.get_page_by_id(page_id).batch_on
	2207	if not batch_on:
	2208	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title=title))

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SasView

source: sasview/src/sas/sasgui/perspectives/fitting/fitting.py @ 7b07fbe

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