[77d92cd] | 1 | """ |
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| 2 | This module provides a GUI for the file converter |
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| 3 | """ |
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| 4 | |
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| 5 | import wx |
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| 6 | import sys |
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[05595c4] | 7 | import os |
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[a58706d] | 8 | import numpy as np |
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[77d92cd] | 9 | from wx.lib.scrolledpanel import ScrolledPanel |
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| 10 | from sas.sasgui.guiframe.panel_base import PanelBase |
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| 11 | from sas.sasgui.perspectives.calculator import calculator_widgets as widget |
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[0e11ec7] | 12 | from sas.sasgui.perspectives.file_converter.converter_widgets import FileInput |
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[de0df2c] | 13 | from sas.sasgui.perspectives.file_converter.meta_panels import MetadataWindow |
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| 14 | from sas.sasgui.perspectives.file_converter.meta_panels import DetectorPanel |
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[2a7722b] | 15 | from sas.sasgui.perspectives.file_converter.meta_panels import SamplePanel |
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[55bc56bc] | 16 | from sas.sasgui.perspectives.file_converter.meta_panels import SourcePanel |
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[eb8da5f] | 17 | from sas.sasgui.perspectives.file_converter.frame_select_dialog import FrameSelectDialog |
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[a58706d] | 18 | from sas.sasgui.guiframe.events import StatusEvent |
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[11794f2] | 19 | from sas.sasgui.guiframe.documentation_window import DocumentationWindow |
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[a58706d] | 20 | from sas.sasgui.guiframe.dataFitting import Data1D |
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[e9e777c] | 21 | from sas.sascalc.dataloader.data_info import Data2D |
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[fdbea3c] | 22 | from sas.sasgui.guiframe.utils import check_float |
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[0b1a677] | 23 | from sas.sascalc.file_converter.cansas_writer import CansasWriter |
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| 24 | from sas.sascalc.file_converter.otoko_loader import OTOKOLoader |
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| 25 | from sas.sascalc.file_converter.bsl_loader import BSLLoader |
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[eacc0b0] | 26 | from sas.sascalc.file_converter.ascii2d_loader import ASCII2DLoader |
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[e9e777c] | 27 | from sas.sascalc.file_converter.nxcansas_writer import NXcanSASWriter |
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[f2b3f28] | 28 | from sas.sascalc.dataloader.data_info import Detector |
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[2a7722b] | 29 | from sas.sascalc.dataloader.data_info import Sample |
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[55bc56bc] | 30 | from sas.sascalc.dataloader.data_info import Source |
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[fdbea3c] | 31 | from sas.sascalc.dataloader.data_info import Vector |
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[77d92cd] | 32 | |
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| 33 | # Panel size |
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| 34 | if sys.platform.count("win32") > 0: |
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| 35 | PANEL_TOP = 0 |
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| 36 | _STATICBOX_WIDTH = 410 |
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| 37 | _BOX_WIDTH = 200 |
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[0267d56] | 38 | PANEL_SIZE = 520 |
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[77d92cd] | 39 | FONT_VARIANT = 0 |
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| 40 | else: |
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| 41 | PANEL_TOP = 60 |
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| 42 | _STATICBOX_WIDTH = 430 |
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| 43 | _BOX_WIDTH = 200 |
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[0267d56] | 44 | PANEL_SIZE = 540 |
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[77d92cd] | 45 | FONT_VARIANT = 1 |
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| 46 | |
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| 47 | class ConverterPanel(ScrolledPanel, PanelBase): |
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[ba65aff] | 48 | """ |
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| 49 | This class provides the File Converter GUI |
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| 50 | """ |
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[77d92cd] | 51 | |
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| 52 | def __init__(self, parent, base=None, *args, **kwargs): |
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| 53 | ScrolledPanel.__init__(self, parent, *args, **kwargs) |
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| 54 | PanelBase.__init__(self) |
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[a58706d] | 55 | self.SetupScrolling() |
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[77d92cd] | 56 | self.SetWindowVariant(variant=FONT_VARIANT) |
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| 57 | |
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| 58 | self.base = base |
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| 59 | self.parent = parent |
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[de0df2c] | 60 | self.meta_frames = [] |
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[77d92cd] | 61 | |
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[ba65aff] | 62 | # GUI inputs |
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[a58706d] | 63 | self.q_input = None |
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| 64 | self.iq_input = None |
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| 65 | self.output = None |
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[d6bf064] | 66 | self.radiation_input = None |
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[35488b2] | 67 | self.convert_btn = None |
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[d6bf064] | 68 | self.metadata_section = None |
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[ba65aff] | 69 | |
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[4b862c4] | 70 | self.data_type = "ascii" |
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[a58706d] | 71 | |
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[ba65aff] | 72 | # Metadata values |
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[94667e27] | 73 | self.title = '' |
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| 74 | self.run = '' |
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| 75 | self.run_name = '' |
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| 76 | self.instrument = '' |
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[503cc34] | 77 | self.detector = Detector() |
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| 78 | self.sample = Sample() |
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| 79 | self.source = Source() |
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| 80 | self.properties = ['title', 'run', 'run_name', 'instrument'] |
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| 81 | |
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| 82 | self.detector.name = '' |
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| 83 | self.source.radiation = 'neutron' |
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[4b862c4] | 84 | |
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[a58706d] | 85 | self._do_layout() |
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[77d92cd] | 86 | self.SetAutoLayout(True) |
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| 87 | self.Layout() |
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| 88 | |
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[9e9f848] | 89 | def convert_to_cansas(self, frame_data, filepath, single_file): |
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[ba65aff] | 90 | """ |
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| 91 | Saves an array of Data1D objects to a single CanSAS file with multiple |
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| 92 | <SasData> elements, or to multiple CanSAS files, each with one |
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| 93 | <SasData> element. |
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| 94 | |
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[a26f67f] | 95 | :param frame_data: If single_file is true, an array of Data1D |
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| 96 | objects. If single_file is false, a dictionary of the |
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| 97 | form *{frame_number: Data1D}*. |
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[9e9f848] | 98 | :param filepath: Where to save the CanSAS file |
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[a26f67f] | 99 | :param single_file: If true, array is saved as a single file, |
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| 100 | if false, each item in the array is saved to it's own file |
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[ba65aff] | 101 | """ |
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| 102 | writer = CansasWriter() |
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[ea2a7348] | 103 | entry_attrs = None |
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[94667e27] | 104 | if self.run_name != '': |
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[ea2a7348] | 105 | entry_attrs = { 'name': self.run_name } |
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[5451a78] | 106 | |
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[94f4518] | 107 | if single_file: |
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[9e9f848] | 108 | writer.write(filepath, frame_data, |
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[94f4518] | 109 | sasentry_attrs=entry_attrs) |
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| 110 | else: |
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[9e9f848] | 111 | # Folder and base filename |
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| 112 | [group_path, group_name] = os.path.split(filepath) |
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| 113 | ext = "." + group_name.split('.')[-1] # File extension |
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[5251ec6] | 114 | for frame_number, frame_data in frame_data.items(): |
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[9e9f848] | 115 | # Append frame number to base filename |
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| 116 | filename = group_name.replace(ext, str(frame_number)+ext) |
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| 117 | destination = os.path.join(group_path, filename) |
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| 118 | writer.write(destination, [frame_data], |
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[94f4518] | 119 | sasentry_attrs=entry_attrs) |
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[a58706d] | 120 | |
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[535e181] | 121 | def extract_ascii_data(self, filename): |
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[ba65aff] | 122 | """ |
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| 123 | Extracts data from a single-column ASCII file |
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| 124 | |
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| 125 | :param filename: The file to load data from |
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| 126 | :return: A numpy array containing the extracted data |
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| 127 | """ |
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[514a00e] | 128 | try: |
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| 129 | data = np.loadtxt(filename, dtype=str) |
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| 130 | except: |
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| 131 | is_bsl = False |
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| 132 | # Check if file is a BSL or OTOKO header file |
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| 133 | f = open(filename, 'r') |
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| 134 | f.readline() |
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| 135 | f.readline() |
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| 136 | bsl_metadata = f.readline().strip().split() |
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| 137 | f.close() |
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| 138 | if len(bsl_metadata) == 10: |
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| 139 | msg = ("Error parsing ASII data. {} looks like a BSL or OTOKO " |
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| 140 | "header file.") |
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| 141 | raise Exception(msg.format(os.path.split(filename)[-1])) |
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[a58706d] | 142 | |
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[ff790b3] | 143 | if len(data.shape) != 1: |
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| 144 | msg = "Error reading {}: Only one column of data is allowed" |
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| 145 | raise Exception(msg.format(filename.split('\\')[-1])) |
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| 146 | |
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[a58706d] | 147 | is_float = True |
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| 148 | try: |
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| 149 | float(data[0]) |
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| 150 | except: |
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| 151 | is_float = False |
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| 152 | |
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| 153 | if not is_float: |
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| 154 | end_char = data[0][-1] |
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| 155 | # If lines end with comma or semi-colon, trim the last character |
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| 156 | if end_char == ',' or end_char == ';': |
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[5251ec6] | 157 | data = [s[0:-1] for s in data] |
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[a58706d] | 158 | else: |
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| 159 | msg = ("Error reading {}: Lines must end with a digit, comma " |
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| 160 | "or semi-colon").format(filename.split('\\')[-1]) |
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| 161 | raise Exception(msg) |
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| 162 | |
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| 163 | return np.array(data, dtype=np.float32) |
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| 164 | |
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[535e181] | 165 | def extract_otoko_data(self, filename): |
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[ba65aff] | 166 | """ |
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| 167 | Extracts data from a 1D OTOKO file |
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| 168 | |
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| 169 | :param filename: The OTOKO file to load the data from |
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| 170 | :return: A numpy array containing the extracted data |
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| 171 | """ |
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[535e181] | 172 | loader = OTOKOLoader(self.q_input.GetPath(), |
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| 173 | self.iq_input.GetPath()) |
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[9c500ab] | 174 | otoko_data = loader.load_otoko_data() |
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| 175 | qdata = otoko_data.q_axis.data |
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| 176 | iqdata = otoko_data.data_axis.data |
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[535e181] | 177 | if len(qdata) > 1: |
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| 178 | msg = ("Q-Axis file has multiple frames. Only 1 frame is " |
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| 179 | "allowed for the Q-Axis") |
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| 180 | wx.PostEvent(self.parent.manager.parent, |
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| 181 | StatusEvent(status=msg, info="error")) |
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| 182 | return |
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| 183 | else: |
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| 184 | qdata = qdata[0] |
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| 185 | |
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| 186 | return qdata, iqdata |
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| 187 | |
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[0b1a677] | 188 | def extract_bsl_data(self, filename): |
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| 189 | """ |
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| 190 | Extracts data from a 2D BSL file |
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| 191 | |
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| 192 | :param filename: The header file to extract the data from |
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| 193 | :return x_data: A 1D array containing all the x coordinates of the data |
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| 194 | :return y_data: A 1D array containing all the y coordinates of the data |
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[a26f67f] | 195 | :return frame_data: A dictionary of the form *{frame_number: data}*, where data is a 2D numpy array containing the intensity data |
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[0b1a677] | 196 | """ |
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| 197 | loader = BSLLoader(filename) |
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| 198 | frames = [0] |
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| 199 | should_continue = True |
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| 200 | |
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| 201 | if loader.n_frames > 1: |
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| 202 | params = self.ask_frame_range(loader.n_frames) |
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| 203 | frames = params['frames'] |
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| 204 | if len(frames) == 0: |
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| 205 | should_continue = False |
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| 206 | elif loader.n_rasters == 1 and loader.n_frames == 1: |
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| 207 | message = ("The selected file is an OTOKO file. Please select the " |
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| 208 | "'OTOKO 1D' option if you wish to convert it.") |
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| 209 | dlg = wx.MessageDialog(self, |
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| 210 | message, |
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| 211 | 'Error!', |
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| 212 | wx.OK | wx.ICON_WARNING) |
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| 213 | dlg.ShowModal() |
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| 214 | should_continue = False |
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| 215 | dlg.Destroy() |
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| 216 | else: |
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| 217 | message = ("The selected data file only has 1 frame, it might be" |
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| 218 | " a multi-frame OTOKO file.\nContinue conversion?") |
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| 219 | dlg = wx.MessageDialog(self, |
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| 220 | message, |
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| 221 | 'Warning!', |
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| 222 | wx.YES_NO | wx.ICON_WARNING) |
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| 223 | should_continue = (dlg.ShowModal() == wx.ID_YES) |
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| 224 | dlg.Destroy() |
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| 225 | |
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| 226 | if not should_continue: |
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[fe498b83] | 227 | return None |
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[0b1a677] | 228 | |
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[fe498b83] | 229 | frame_data = loader.load_frames(frames) |
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[0b1a677] | 230 | |
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[fe498b83] | 231 | return frame_data |
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[0b1a677] | 232 | |
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[eb8da5f] | 233 | def ask_frame_range(self, n_frames): |
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[ba65aff] | 234 | """ |
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| 235 | Display a dialog asking the user to input the range of frames they |
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| 236 | would like to export |
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| 237 | |
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| 238 | :param n_frames: How many frames the loaded data file has |
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| 239 | :return: A dictionary containing the parameters input by the user |
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| 240 | """ |
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[eb8da5f] | 241 | valid_input = False |
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[bec6cb8] | 242 | _, ext = os.path.splitext(self.output.GetPath()) |
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| 243 | show_single_btn = (ext == '.h5') |
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| 244 | dlg = FrameSelectDialog(n_frames, show_single_btn) |
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[eb8da5f] | 245 | frames = None |
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| 246 | increment = None |
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[94f4518] | 247 | single_file = True |
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[eb8da5f] | 248 | while not valid_input: |
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| 249 | if dlg.ShowModal() == wx.ID_OK: |
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| 250 | msg = "" |
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| 251 | try: |
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| 252 | first_frame = int(dlg.first_input.GetValue()) |
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| 253 | last_frame = int(dlg.last_input.GetValue()) |
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| 254 | increment = int(dlg.increment_input.GetValue()) |
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[bec6cb8] | 255 | if not show_single_btn: |
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[05595c4] | 256 | single_file = dlg.single_btn.GetValue() |
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| 257 | |
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[eb8da5f] | 258 | if last_frame < 0 or first_frame < 0: |
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| 259 | msg = "Frame values must be positive" |
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| 260 | elif increment < 1: |
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| 261 | msg = "Increment must be greater than or equal to 1" |
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| 262 | elif first_frame > last_frame: |
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| 263 | msg = "First frame must be less than last frame" |
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[05595c4] | 264 | elif last_frame >= n_frames: |
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[eb8da5f] | 265 | msg = "Last frame must be less than {}".format(n_frames) |
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| 266 | else: |
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| 267 | valid_input = True |
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| 268 | except: |
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| 269 | valid_input = False |
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| 270 | msg = "Please enter valid integer values" |
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| 271 | |
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| 272 | if not valid_input: |
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| 273 | wx.PostEvent(self.parent.manager.parent, |
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| 274 | StatusEvent(status=msg)) |
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| 275 | else: |
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[94f4518] | 276 | return { 'frames': [], 'inc': None, 'file': single_file } |
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[5251ec6] | 277 | frames = list(range(first_frame, last_frame + 1, increment)) |
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[94f4518] | 278 | return { 'frames': frames, 'inc': increment, 'file': single_file } |
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[eb8da5f] | 279 | |
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[edf0e06] | 280 | def get_metadata(self): |
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| 281 | # Prepare the metadata for writing to a file |
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| 282 | if self.run is None: |
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| 283 | self.run = [] |
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| 284 | elif not isinstance(self.run, list): |
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| 285 | self.run = [self.run] |
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[0b1a677] | 286 | |
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[be88076] | 287 | run_name = None |
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| 288 | if len(self.run) > 0: |
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| 289 | run_number = self.run[0] |
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| 290 | run_name = { run_number: self.run_name } |
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| 291 | |
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[edf0e06] | 292 | if self.title is None: |
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| 293 | self.title = '' |
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[e9e777c] | 294 | |
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[edf0e06] | 295 | metadata = { |
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| 296 | 'title': self.title, |
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| 297 | 'run': self.run, |
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[be88076] | 298 | 'run_name': run_name, |
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[edf0e06] | 299 | 'instrument': self.instrument, |
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| 300 | 'detector': [self.detector], |
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| 301 | 'sample': self.sample, |
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| 302 | 'source': self.source |
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| 303 | } |
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[535e181] | 304 | |
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[edf0e06] | 305 | return metadata |
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[a58706d] | 306 | |
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[edf0e06] | 307 | def convert_1d_data(self, qdata, iqdata): |
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| 308 | """ |
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| 309 | Formats a 1D array of q_axis data and a 2D array of I axis data (where |
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| 310 | each row of iqdata is a separate row), into an array of Data1D objects |
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| 311 | """ |
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[535e181] | 312 | frames = [] |
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| 313 | increment = 1 |
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| 314 | single_file = True |
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[05595c4] | 315 | n_frames = iqdata.shape[0] |
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[535e181] | 316 | # Standard file has 3 frames: SAS, calibration and WAS |
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[05595c4] | 317 | if n_frames > 3: |
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[ba65aff] | 318 | # File has multiple frames - ask the user which ones they want to |
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| 319 | # export |
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[05595c4] | 320 | params = self.ask_frame_range(n_frames) |
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[535e181] | 321 | frames = params['frames'] |
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| 322 | increment = params['inc'] |
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| 323 | single_file = params['file'] |
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| 324 | if frames == []: return |
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| 325 | else: # Only interested in SAS data |
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| 326 | frames = [0] |
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| 327 | |
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[f2b3f28] | 328 | output_path = self.output.GetPath() |
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[edf0e06] | 329 | metadata = self.get_metadata() |
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[f2b3f28] | 330 | |
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[9e9f848] | 331 | frame_data = {} |
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[eb8da5f] | 332 | for i in frames: |
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| 333 | data = Data1D(x=qdata, y=iqdata[i]) |
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[9e9f848] | 334 | frame_data[i] = data |
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[94f4518] | 335 | if single_file: |
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| 336 | # Only need to set metadata on first Data1D object |
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[5251ec6] | 337 | frame_data = list(frame_data.values()) # Don't need to know frame numbers |
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[94f4518] | 338 | frame_data[0].filename = output_path.split('\\')[-1] |
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[5251ec6] | 339 | for key, value in metadata.items(): |
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[94f4518] | 340 | setattr(frame_data[0], key, value) |
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| 341 | else: |
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| 342 | # Need to set metadata for all Data1D objects |
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[9e9f848] | 343 | for datainfo in frame_data.values(): |
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[94f4518] | 344 | datainfo.filename = output_path.split('\\')[-1] |
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[5251ec6] | 345 | for key, value in metadata.items(): |
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[94f4518] | 346 | setattr(datainfo, key, value) |
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| 347 | |
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[bec6cb8] | 348 | _, ext = os.path.splitext(output_path) |
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| 349 | if ext == '.xml': |
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| 350 | self.convert_to_cansas(frame_data, output_path, single_file) |
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| 351 | else: # ext == '.h5' |
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| 352 | w = NXcanSASWriter() |
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| 353 | w.write(frame_data, output_path) |
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[edf0e06] | 354 | |
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[eacc0b0] | 355 | def convert_2d_data(self, dataset): |
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| 356 | metadata = self.get_metadata() |
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[5251ec6] | 357 | for key, value in metadata.items(): |
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[eacc0b0] | 358 | setattr(dataset[0], key, value) |
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| 359 | |
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| 360 | w = NXcanSASWriter() |
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| 361 | w.write(dataset, self.output.GetPath()) |
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| 362 | |
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[edf0e06] | 363 | def on_convert(self, event): |
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| 364 | """Called when the Convert button is clicked""" |
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| 365 | if not self.validate_inputs(): |
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| 366 | return |
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| 367 | |
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| 368 | self.sample.ID = self.title |
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| 369 | |
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| 370 | try: |
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| 371 | if self.data_type == 'ascii': |
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| 372 | qdata = self.extract_ascii_data(self.q_input.GetPath()) |
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| 373 | iqdata = np.array([self.extract_ascii_data(self.iq_input.GetPath())]) |
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| 374 | self.convert_1d_data(qdata, iqdata) |
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| 375 | elif self.data_type == 'otoko': |
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| 376 | qdata, iqdata = self.extract_otoko_data(self.q_input.GetPath()) |
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| 377 | self.convert_1d_data(qdata, iqdata) |
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[eacc0b0] | 378 | elif self.data_type == 'ascii2d': |
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| 379 | loader = ASCII2DLoader(self.iq_input.GetPath()) |
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| 380 | data = loader.load() |
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| 381 | dataset = [data] # ASCII 2D only ever contains 1 frame |
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| 382 | self.convert_2d_data(dataset) |
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[edf0e06] | 383 | else: # self.data_type == 'bsl' |
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| 384 | dataset = self.extract_bsl_data(self.iq_input.GetPath()) |
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| 385 | if dataset is None: |
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| 386 | # Cancelled by user |
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| 387 | return |
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[eacc0b0] | 388 | self.convert_2d_data(dataset) |
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[edf0e06] | 389 | |
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| 390 | except Exception as ex: |
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| 391 | msg = str(ex) |
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| 392 | wx.PostEvent(self.parent.manager.parent, |
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| 393 | StatusEvent(status=msg, info='error')) |
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| 394 | return |
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| 395 | |
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[a58706d] | 396 | wx.PostEvent(self.parent.manager.parent, |
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| 397 | StatusEvent(status="Conversion completed.")) |
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| 398 | |
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[11794f2] | 399 | def on_help(self, event): |
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[ba65aff] | 400 | """ |
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| 401 | Show the File Converter documentation |
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| 402 | """ |
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[11794f2] | 403 | tree_location = ("user/sasgui/perspectives/file_converter/" |
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| 404 | "file_converter_help.html") |
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| 405 | doc_viewer = DocumentationWindow(self, -1, tree_location, |
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| 406 | "", "File Converter Help") |
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| 407 | |
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[fdbea3c] | 408 | def validate_inputs(self): |
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| 409 | msg = "You must select a" |
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[eacc0b0] | 410 | if self.q_input.GetPath() == '' and self.data_type != 'bsl' \ |
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| 411 | and self.data_type != 'ascii2d': |
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[fdbea3c] | 412 | msg += " Q Axis input file." |
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| 413 | elif self.iq_input.GetPath() == '': |
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| 414 | msg += "n Intensity input file." |
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| 415 | elif self.output.GetPath() == '': |
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[35488b2] | 416 | msg += " destination for the converted file." |
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[fdbea3c] | 417 | if msg != "You must select a": |
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| 418 | wx.PostEvent(self.parent.manager.parent, |
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| 419 | StatusEvent(status=msg, info='error')) |
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| 420 | return |
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| 421 | |
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| 422 | return True |
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| 423 | |
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[af84162] | 424 | def show_detector_window(self, event): |
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[ba65aff] | 425 | """ |
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[b7c21a7] | 426 | Show the window for inputting Detector metadata |
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[ba65aff] | 427 | """ |
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[de0df2c] | 428 | if self.meta_frames != []: |
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| 429 | for frame in self.meta_frames: |
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| 430 | frame.panel.on_close() |
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| 431 | detector_frame = MetadataWindow(DetectorPanel, |
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| 432 | parent=self.parent.manager.parent, manager=self, |
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[503cc34] | 433 | metadata=self.detector, title='Detector Metadata') |
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[de0df2c] | 434 | self.meta_frames.append(detector_frame) |
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| 435 | self.parent.manager.put_icon(detector_frame) |
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| 436 | detector_frame.Show(True) |
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[fdbea3c] | 437 | |
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[2a7722b] | 438 | def show_sample_window(self, event): |
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[ba65aff] | 439 | """ |
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[b7c21a7] | 440 | Show the window for inputting Sample metadata |
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[ba65aff] | 441 | """ |
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[2a7722b] | 442 | if self.meta_frames != []: |
---|
| 443 | for frame in self.meta_frames: |
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| 444 | frame.panel.on_close() |
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| 445 | sample_frame = MetadataWindow(SamplePanel, |
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| 446 | parent=self.parent.manager.parent, manager=self, |
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[503cc34] | 447 | metadata=self.sample, title='Sample Metadata') |
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[2a7722b] | 448 | self.meta_frames.append(sample_frame) |
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| 449 | self.parent.manager.put_icon(sample_frame) |
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| 450 | sample_frame.Show(True) |
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| 451 | |
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[55bc56bc] | 452 | def show_source_window(self, event): |
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[ba65aff] | 453 | """ |
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[b7c21a7] | 454 | Show the window for inputting Source metadata |
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[ba65aff] | 455 | """ |
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[55bc56bc] | 456 | if self.meta_frames != []: |
---|
| 457 | for frame in self.meta_frames: |
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| 458 | frame.panel.on_close() |
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| 459 | source_frame = MetadataWindow(SourcePanel, |
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| 460 | parent=self.parent.manager.parent, manager=self, |
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[503cc34] | 461 | metadata=self.source, title="Source Metadata") |
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[55bc56bc] | 462 | self.meta_frames.append(source_frame) |
---|
| 463 | self.parent.manager.put_icon(source_frame) |
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| 464 | source_frame.Show(True) |
---|
| 465 | |
---|
[a027549] | 466 | def on_collapsible_pane(self, event): |
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[ba65aff] | 467 | """ |
---|
| 468 | Resize the scrollable area to fit the metadata pane when it's |
---|
| 469 | collapsed or expanded |
---|
| 470 | """ |
---|
[a027549] | 471 | self.Freeze() |
---|
| 472 | self.SetupScrolling() |
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| 473 | self.parent.Layout() |
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| 474 | self.Thaw() |
---|
| 475 | |
---|
[4b862c4] | 476 | def datatype_changed(self, event): |
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[ba65aff] | 477 | """ |
---|
| 478 | Update the UI and self.data_type when a data type radio button is |
---|
| 479 | pressed |
---|
| 480 | """ |
---|
[4b862c4] | 481 | event.Skip() |
---|
| 482 | dtype = event.GetEventObject().GetName() |
---|
| 483 | self.data_type = dtype |
---|
[eacc0b0] | 484 | if dtype == 'bsl' or dtype == 'ascii2d': |
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[05595c4] | 485 | self.q_input.SetPath("") |
---|
[535e181] | 486 | self.q_input.Disable() |
---|
[e9e777c] | 487 | self.output.SetWildcard("NXcanSAS HDF5 File (*.h5)|*.h5") |
---|
[535e181] | 488 | else: |
---|
| 489 | self.q_input.Enable() |
---|
[d6bf064] | 490 | self.radiation_input.Enable() |
---|
| 491 | self.metadata_section.Enable() |
---|
[bec6cb8] | 492 | self.output.SetWildcard("CanSAS 1D (*.xml)|*.xml|NXcanSAS HDF5 File (*.h5)|*.h5") |
---|
[4b862c4] | 493 | |
---|
[55775e8] | 494 | def radiationtype_changed(self, event): |
---|
| 495 | event.Skip() |
---|
| 496 | rtype = event.GetEventObject().GetValue().lower() |
---|
[503cc34] | 497 | self.source.radiation = rtype |
---|
[55775e8] | 498 | |
---|
[f2b3f28] | 499 | def metadata_changed(self, event): |
---|
| 500 | event.Skip() |
---|
| 501 | textbox = event.GetEventObject() |
---|
| 502 | attr = textbox.GetName() |
---|
| 503 | value = textbox.GetValue().strip() |
---|
[fdbea3c] | 504 | |
---|
[503cc34] | 505 | setattr(self, attr, value) |
---|
[f2b3f28] | 506 | |
---|
| 507 | |
---|
[77d92cd] | 508 | def _do_layout(self): |
---|
[f2b3f28] | 509 | vbox = wx.BoxSizer(wx.VERTICAL) |
---|
[a58706d] | 510 | |
---|
[ed9f872] | 511 | instructions = ( |
---|
[0267d56] | 512 | "If converting a 1D dataset, select linked single-column ASCII files " |
---|
| 513 | "containing the Q-axis and intensity-axis data, or a 1D BSL/OTOKO file." |
---|
| 514 | " If converting 2D data, select an ASCII file in the ISIS 2D file " |
---|
| 515 | "format, or a 2D BSL/OTOKO file. Choose where to save the converted " |
---|
| 516 | "file and click convert.\n" |
---|
| 517 | "One dimensional ASCII and BSL/OTOKO files can be converted to CanSAS " |
---|
| 518 | "(XML) or NXcanSAS (HDF5) formats. Two dimensional datasets can only be" |
---|
| 519 | " converted to the NXcanSAS format.\n" |
---|
[19296dc] | 520 | "Metadata can also be optionally added to the output file." |
---|
[ed9f872] | 521 | ) |
---|
[f5c52b0] | 522 | |
---|
[5afe77f] | 523 | instruction_label = wx.StaticText(self, -1, instructions, |
---|
| 524 | size=(_STATICBOX_WIDTH+40, -1)) |
---|
| 525 | instruction_label.Wrap(_STATICBOX_WIDTH+40) |
---|
[f2b3f28] | 526 | vbox.Add(instruction_label, flag=wx.TOP | wx.LEFT | wx.RIGHT, border=5) |
---|
[77d92cd] | 527 | |
---|
[a58706d] | 528 | section = wx.StaticBox(self, -1) |
---|
| 529 | section_sizer = wx.StaticBoxSizer(section, wx.VERTICAL) |
---|
| 530 | section_sizer.SetMinSize((_STATICBOX_WIDTH, -1)) |
---|
[77d92cd] | 531 | |
---|
| 532 | input_grid = wx.GridBagSizer(5, 5) |
---|
| 533 | |
---|
[4b862c4] | 534 | y = 0 |
---|
| 535 | |
---|
[489bb46] | 536 | data_type_label = wx.StaticText(self, -1, "Input Format: ") |
---|
| 537 | input_grid.Add(data_type_label, (y,0), (1,1), |
---|
| 538 | wx.ALIGN_CENTER_VERTICAL, 5) |
---|
| 539 | radio_sizer = wx.BoxSizer(wx.HORIZONTAL) |
---|
[eacc0b0] | 540 | ascii_btn = wx.RadioButton(self, -1, "ASCII 1D", name="ascii", |
---|
[489bb46] | 541 | style=wx.RB_GROUP) |
---|
| 542 | ascii_btn.Bind(wx.EVT_RADIOBUTTON, self.datatype_changed) |
---|
| 543 | radio_sizer.Add(ascii_btn) |
---|
[eacc0b0] | 544 | ascii2d_btn = wx.RadioButton(self, -1, "ASCII 2D", name="ascii2d") |
---|
| 545 | ascii2d_btn.Bind(wx.EVT_RADIOBUTTON, self.datatype_changed) |
---|
| 546 | radio_sizer.Add(ascii2d_btn) |
---|
[ed9f872] | 547 | otoko_btn = wx.RadioButton(self, -1, "BSL 1D", name="otoko") |
---|
[489bb46] | 548 | otoko_btn.Bind(wx.EVT_RADIOBUTTON, self.datatype_changed) |
---|
| 549 | radio_sizer.Add(otoko_btn) |
---|
| 550 | bsl_btn = wx.RadioButton(self, -1, "BSL 2D", name="bsl") |
---|
| 551 | bsl_btn.Bind(wx.EVT_RADIOBUTTON, self.datatype_changed) |
---|
| 552 | radio_sizer.Add(bsl_btn) |
---|
[eacc0b0] | 553 | input_grid.Add(radio_sizer, (y,1), (1,1), wx.ALL, 5) |
---|
[489bb46] | 554 | y += 1 |
---|
| 555 | |
---|
[13b9a63] | 556 | q_label = wx.StaticText(self, -1, "Q-Axis Data: ") |
---|
[4b862c4] | 557 | input_grid.Add(q_label, (y,0), (1,1), wx.ALIGN_CENTER_VERTICAL, 5) |
---|
[a58706d] | 558 | |
---|
| 559 | self.q_input = wx.FilePickerCtrl(self, -1, |
---|
| 560 | size=(_STATICBOX_WIDTH-80, -1), |
---|
[785fa53] | 561 | message="Chose the Q-Axis data file.", |
---|
| 562 | style=wx.FLP_USE_TEXTCTRL | wx.FLP_CHANGE_DIR) |
---|
[4b862c4] | 563 | input_grid.Add(self.q_input, (y,1), (1,1), wx.ALL, 5) |
---|
| 564 | y += 1 |
---|
[a58706d] | 565 | |
---|
[eacc0b0] | 566 | iq_label = wx.StaticText(self, -1, "Intensity Data: ") |
---|
[4b862c4] | 567 | input_grid.Add(iq_label, (y,0), (1,1), wx.ALIGN_CENTER_VERTICAL, 5) |
---|
[a58706d] | 568 | |
---|
| 569 | self.iq_input = wx.FilePickerCtrl(self, -1, |
---|
| 570 | size=(_STATICBOX_WIDTH-80, -1), |
---|
[785fa53] | 571 | message="Chose the Intensity-Axis data file.", |
---|
| 572 | style=wx.FLP_USE_TEXTCTRL | wx.FLP_CHANGE_DIR) |
---|
[4b862c4] | 573 | input_grid.Add(self.iq_input, (y,1), (1,1), wx.ALL, 5) |
---|
| 574 | y += 1 |
---|
| 575 | |
---|
[55775e8] | 576 | radiation_label = wx.StaticText(self, -1, "Radiation Type: ") |
---|
[489bb46] | 577 | input_grid.Add(radiation_label, (y,0), (1,1), wx.ALIGN_CENTER_VERTICAL, 5) |
---|
[d6bf064] | 578 | self.radiation_input = wx.ComboBox(self, -1, |
---|
[55775e8] | 579 | choices=["Neutron", "X-Ray", "Muon", "Electron"], |
---|
| 580 | name="radiation", style=wx.CB_READONLY, value="Neutron") |
---|
[d6bf064] | 581 | self.radiation_input.Bind(wx.EVT_COMBOBOX, self.radiationtype_changed) |
---|
| 582 | input_grid.Add(self.radiation_input, (y,1), (1,1), wx.ALL, 5) |
---|
[55775e8] | 583 | y += 1 |
---|
| 584 | |
---|
[a58706d] | 585 | output_label = wx.StaticText(self, -1, "Output File: ") |
---|
[4b862c4] | 586 | input_grid.Add(output_label, (y,0), (1,1), wx.ALIGN_CENTER_VERTICAL, 5) |
---|
[a58706d] | 587 | |
---|
[0e11ec7] | 588 | self.output = FileInput(self, |
---|
[bec6cb8] | 589 | wildcard="CanSAS 1D (*.xml)|*.xml|NXcanSAS HDF5 File (*.h5)|*.h5") |
---|
[0e11ec7] | 590 | input_grid.Add(self.output.GetCtrl(), (y,1), (1,1), wx.EXPAND | wx.ALL, 5) |
---|
[4b862c4] | 591 | y += 1 |
---|
[a58706d] | 592 | |
---|
[35488b2] | 593 | self.convert_btn = wx.Button(self, wx.ID_OK, "Stop Converstion") |
---|
| 594 | self.convert_btn.SetLabel("Convert") |
---|
| 595 | input_grid.Add(self.convert_btn, (y,0), (1,1), wx.ALL, 5) |
---|
| 596 | self.convert_btn.Bind(wx.EVT_BUTTON, self.on_convert) |
---|
[77d92cd] | 597 | |
---|
[11794f2] | 598 | help_btn = wx.Button(self, -1, "HELP") |
---|
| 599 | input_grid.Add(help_btn, (y,1), (1,1), wx.ALL, 5) |
---|
| 600 | help_btn.Bind(wx.EVT_BUTTON, self.on_help) |
---|
| 601 | |
---|
[a58706d] | 602 | section_sizer.Add(input_grid) |
---|
[77d92cd] | 603 | |
---|
[f2b3f28] | 604 | vbox.Add(section_sizer, flag=wx.ALL, border=5) |
---|
| 605 | |
---|
[d6bf064] | 606 | self.metadata_section = wx.CollapsiblePane(self, -1, "Metadata", |
---|
[fdbea3c] | 607 | size=(_STATICBOX_WIDTH+40, -1), style=wx.WS_EX_VALIDATE_RECURSIVELY) |
---|
[d6bf064] | 608 | metadata_pane = self.metadata_section.GetPane() |
---|
[f2b3f28] | 609 | metadata_grid = wx.GridBagSizer(5, 5) |
---|
| 610 | |
---|
[d6bf064] | 611 | self.metadata_section.Bind(wx.EVT_COLLAPSIBLEPANE_CHANGED, |
---|
[a027549] | 612 | self.on_collapsible_pane) |
---|
| 613 | |
---|
[f2b3f28] | 614 | y = 0 |
---|
[503cc34] | 615 | for item in self.properties: |
---|
[7c8ddb83] | 616 | # Capitalise each word |
---|
| 617 | label_txt = " ".join( |
---|
| 618 | [s.capitalize() for s in item.replace('_', ' ').split(' ')]) |
---|
| 619 | if item == 'run': |
---|
| 620 | label_txt = "Run Number" |
---|
[fdbea3c] | 621 | label = wx.StaticText(metadata_pane, -1, label_txt, |
---|
[f2b3f28] | 622 | style=wx.ALIGN_CENTER_VERTICAL) |
---|
[fdbea3c] | 623 | input_box = wx.TextCtrl(metadata_pane, name=item, |
---|
[f2b3f28] | 624 | size=(_STATICBOX_WIDTH-80, -1)) |
---|
| 625 | input_box.Bind(wx.EVT_TEXT, self.metadata_changed) |
---|
| 626 | metadata_grid.Add(label, (y,0), (1,1), |
---|
| 627 | wx.ALL | wx.ALIGN_CENTER_VERTICAL, 5) |
---|
[fdbea3c] | 628 | metadata_grid.Add(input_box, (y,1), (1,2), wx.EXPAND) |
---|
[f2b3f28] | 629 | y += 1 |
---|
| 630 | |
---|
[fdbea3c] | 631 | detector_label = wx.StaticText(metadata_pane, -1, |
---|
| 632 | "Detector:") |
---|
| 633 | metadata_grid.Add(detector_label, (y, 0), (1,1), wx.ALL | wx.EXPAND, 5) |
---|
[af84162] | 634 | detector_btn = wx.Button(metadata_pane, -1, "Enter Detector Metadata") |
---|
| 635 | metadata_grid.Add(detector_btn, (y, 1), (1,1), wx.ALL | wx.EXPAND, 5) |
---|
| 636 | detector_btn.Bind(wx.EVT_BUTTON, self.show_detector_window) |
---|
[fdbea3c] | 637 | y += 1 |
---|
| 638 | |
---|
[2a7722b] | 639 | sample_label = wx.StaticText(metadata_pane, -1, "Sample: ") |
---|
| 640 | metadata_grid.Add(sample_label, (y,0), (1,1), wx.ALL | wx.EXPAND, 5) |
---|
| 641 | sample_btn = wx.Button(metadata_pane, -1, "Enter Sample Metadata") |
---|
| 642 | metadata_grid.Add(sample_btn, (y,1), (1,1), wx.ALL | wx.EXPAND, 5) |
---|
| 643 | sample_btn.Bind(wx.EVT_BUTTON, self.show_sample_window) |
---|
| 644 | y += 1 |
---|
| 645 | |
---|
[55bc56bc] | 646 | source_label = wx.StaticText(metadata_pane, -1, "Source: ") |
---|
| 647 | metadata_grid.Add(source_label, (y,0), (1,1), wx.ALL | wx.EXPAND, 5) |
---|
| 648 | source_btn = wx.Button(metadata_pane, -1, "Enter Source Metadata") |
---|
| 649 | source_btn.Bind(wx.EVT_BUTTON, self.show_source_window) |
---|
| 650 | metadata_grid.Add(source_btn, (y,1), (1,1), wx.ALL | wx.EXPAND, 5) |
---|
| 651 | y += 1 |
---|
| 652 | |
---|
[fdbea3c] | 653 | metadata_pane.SetSizer(metadata_grid) |
---|
[f2b3f28] | 654 | |
---|
[d6bf064] | 655 | vbox.Add(self.metadata_section, proportion=0, flag=wx.ALL, border=5) |
---|
[77d92cd] | 656 | |
---|
| 657 | vbox.Fit(self) |
---|
| 658 | self.SetSizer(vbox) |
---|
| 659 | |
---|
| 660 | class ConverterWindow(widget.CHILD_FRAME): |
---|
[ba65aff] | 661 | """Displays ConverterPanel""" |
---|
[77d92cd] | 662 | |
---|
| 663 | def __init__(self, parent=None, title='File Converter', base=None, |
---|
[0267d56] | 664 | manager=None, size=(PANEL_SIZE * 0.96, PANEL_SIZE * 0.9), |
---|
[77d92cd] | 665 | *args, **kwargs): |
---|
| 666 | kwargs['title'] = title |
---|
| 667 | kwargs['size'] = size |
---|
| 668 | widget.CHILD_FRAME.__init__(self, parent, *args, **kwargs) |
---|
| 669 | |
---|
| 670 | self.manager = manager |
---|
| 671 | self.panel = ConverterPanel(self, base=None) |
---|
| 672 | self.Bind(wx.EVT_CLOSE, self.on_close) |
---|
| 673 | self.SetPosition((wx.LEFT, PANEL_TOP)) |
---|
| 674 | self.Show(True) |
---|
| 675 | |
---|
| 676 | def on_close(self, event): |
---|
| 677 | if self.manager is not None: |
---|
| 678 | self.manager.converter_frame = None |
---|
| 679 | self.Destroy() |
---|