pagestate.py @ ccfe03b

ESS_GUI_bumps_abstraction

Last change on this file since ccfe03b was b1b71ad, checked in by Piotr Rozyczko <piotr.rozyczko@…>, 6 years ago
Initial version of the 4.x SVS project file converter. Works for non-disperse, non-magnetic sets
Property mode set to `100644`
File size: 55.3 KB

Line
1	"""
2	Class that holds a fit page state
3	"""
4	# TODO: Refactor code so we don't need to use getattr/setattr
5	################################################################################
6	# This software was developed by the University of Tennessee as part of the
7	# Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
8	# project funded by the US National Science Foundation.
9	#
10	# See the license text in license.txt
11	#
12	# copyright 2009, University of Tennessee
13	################################################################################
14	import time
15	import re
16	import os
17	import sys
18	import copy
19	import logging
20	import numpy as np
21	import traceback
22
23	import xml.dom.minidom
24	from xml.dom.minidom import parseString
25	from xml.dom.minidom import getDOMImplementation
26	from lxml import etree
27
28	from sasmodels import convert
29	import sasmodels.weights
30
31	from sas.sasview import __version__ as SASVIEW_VERSION
32
33	import sas.sascalc.dataloader
34	from sas.sascalc.dataloader.readers.cansas_reader import Reader as CansasReader
35	from sas.sascalc.dataloader.readers.cansas_reader import get_content, write_node
36	from sas.sascalc.dataloader.data_info import Data2D, Collimation, Detector
37	from sas.sascalc.dataloader.data_info import Process, Aperture
38
39	logger = logging.getLogger(__name__)
40
41	# Information to read/write state as xml
42	FITTING_NODE_NAME = 'fitting_plug_in'
43	CANSAS_NS = {"ns": "cansas1d/1.0"}
44
45	CUSTOM_MODEL = 'Plugin Models'
46	CUSTOM_MODEL_OLD = 'Customized Models'
47
48	LIST_OF_DATA_ATTRIBUTES = [["is_data", "is_data", "bool"],
49	["group_id", "data_group_id", "string"],
50	["data_name", "data_name", "string"],
51	["data_id", "data_id", "string"],
52	["name", "name", "string"],
53	["data_name", "data_name", "string"]]
54	LIST_OF_STATE_ATTRIBUTES = [["qmin", "qmin", "float"],
55	["qmax", "qmax", "float"],
56	["npts", "npts", "float"],
57	["categorycombobox", "categorycombobox", "string"],
58	["formfactorcombobox", "formfactorcombobox",
59	"string"],
60	["structurecombobox", "structurecombobox",
61	"string"],
62	["multi_factor", "multi_factor", "float"],
63	["magnetic_on", "magnetic_on", "bool"],
64	["enable_smearer", "enable_smearer", "bool"],
65	["disable_smearer", "disable_smearer", "bool"],
66	["pinhole_smearer", "pinhole_smearer", "bool"],
67	["slit_smearer", "slit_smearer", "bool"],
68	["enable_disp", "enable_disp", "bool"],
69	["disable_disp", "disable_disp", "bool"],
70	["dI_noweight", "dI_noweight", "bool"],
71	["dI_didata", "dI_didata", "bool"],
72	["dI_sqrdata", "dI_sqrdata", "bool"],
73	["dI_idata", "dI_idata", "bool"],
74	["enable2D", "enable2D", "bool"],
75	["cb1", "cb1", "bool"],
76	["tcChi", "tcChi", "float"],
77	["dq_l", "dq_l", "float"],
78	["dq_r", "dq_r", "float"],
79	["dx_percent", "dx_percent", "float"],
80	["dxl", "dxl", "float"],
81	["dxw", "dxw", "float"]]
82
83	LIST_OF_MODEL_ATTRIBUTES = [["values", "values"],
84	["weights", "weights"]]
85
86	DISPERSION_LIST = [["disp_obj_dict", "disp_obj_dict", "string"]]
87
88	LIST_OF_STATE_PARAMETERS = [["parameters", "parameters"],
89	["str_parameters", "str_parameters"],
90	["orientation_parameters", "orientation_params"],
91	["dispersity_parameters",
92	"orientation_params_disp"],
93	["fixed_param", "fixed_param"],
94	["fittable_param", "fittable_param"]]
95	LIST_OF_DATA_2D_ATTR = [["xmin", "xmin", "float"],
96	["xmax", "xmax", "float"],
97	["ymin", "ymin", "float"],
98	["ymax", "ymax", "float"],
99	["_xaxis", "_xaxis", "string"],
100	["_xunit", "_xunit", "string"],
101	["_yaxis", "_yaxis", "string"],
102	["_yunit", "_yunit", "string"],
103	["_zaxis", "_zaxis", "string"],
104	["_zunit", "_zunit", "string"]]
105	LIST_OF_DATA_2D_VALUES = [["qx_data", "qx_data", "float"],
106	["qy_data", "qy_data", "float"],
107	["dqx_data", "dqx_data", "float"],
108	["dqy_data", "dqy_data", "float"],
109	["data", "data", "float"],
110	["q_data", "q_data", "float"],
111	["err_data", "err_data", "float"],
112	["mask", "mask", "bool"]]
113
114
115	def parse_entry_helper(node, item):
116	"""
117	Create a numpy list from value extrated from the node
118
119	:param node: node from each the value is stored
120	:param item: list name of three strings.the two first are name of data
121	attribute and the third one is the type of the value of that
122	attribute. type can be string, float, bool, etc.
123
124	: return: numpy array
125	"""
126	if node is not None:
127	if item[2] == "string":
128	return str(node.get(item[0]).strip())
129	elif item[2] == "bool":
130	try:
131	return node.get(item[0]).strip() == "True"
132	except Exception:
133	return None
134	else:
135	try:
136	return float(node.get(item[0]))
137	except Exception:
138	return None
139
140
141	class PageState(object):
142	"""
143	Contains information to reconstruct a page of the fitpanel.
144	"""
145	def __init__(self, model=None, data=None):
146	"""
147	Initialize the current state
148
149	:param model: a selected model within a page
150	:param data:
151
152	"""
153	self.file = None
154	# Time of state creation
155	self.timestamp = time.time()
156	# Data member to store the dispersion object created
157	self.disp_obj_dict = {}
158	# ------------------------
159	# Data used for fitting
160	self.data = data
161	# model data
162	self.theory_data = None
163	# Is 2D
164	self.is_2D = False
165	self.images = None
166
167	# save additional information on data that dataloader.reader
168	# does not read
169	self.is_data = None
170	self.data_name = ""
171
172	if self.data is not None:
173	self.data_name = self.data.name
174	self.data_id = None
175	if self.data is not None and hasattr(self.data, "id"):
176	self.data_id = self.data.id
177	self.data_group_id = None
178	if self.data is not None and hasattr(self.data, "group_id"):
179	self.data_group_id = self.data.group_id
180
181	# reset True change the state of existing button
182	self.reset = False
183
184	# flag to allow data2D plot
185	self.enable2D = False
186	# model on which the fit would be performed
187	self.model = model
188	self.m_name = None
189	# list of process done to model
190	self.process = []
191	# fit page manager
192	self.manager = None
193	# Event_owner is the owner of model event
194	self.event_owner = None
195	# page name
196	self.page_name = ""
197	# Contains link between model, its parameters, and panel organization
198	self.parameters = []
199	# String parameter list that can not be fitted
200	self.str_parameters = []
201	# Contains list of parameters that cannot be fitted and reference to
202	# panel objects
203	self.fixed_param = []
204	# Contains list of parameters with dispersity and reference to
205	# panel objects
206	self.fittable_param = []
207	# orientation parameters
208	self.orientation_params = []
209	# orientation parameters for gaussian dispersity
210	self.orientation_params_disp = []
211	self.dq_l = None
212	self.dq_r = None
213	self.dx_percent = None
214	self.dx_old = False
215	self.dxl = None
216	self.dxw = None
217	# list of dispersion parameters
218	self.disp_list = []
219	if self.model is not None:
220	self.disp_list = self.model.getDispParamList()
221
222	self.disp_cb_dict = {}
223	self.values = {}
224	self.weights = {}
225
226	# contains link between a model and selected parameters to fit
227	self.param_toFit = []
228	# save the state of the context menu
229	self.saved_states = {}
230	# save selection of combobox
231	self.formfactorcombobox = None
232	self.categorycombobox = None
233	self.structurecombobox = None
234
235	# radio box to select type of model
236	# self.shape_rbutton = False
237	# self.shape_indep_rbutton = False
238	# self.struct_rbutton = False
239	# self.plugin_rbutton = False
240	# the indice of the current selection
241	self.disp_box = 0
242	# Qrange
243	# Q range
244	self.qmin = 0.001
245	self.qmax = 0.1
246	# reset data range
247	self.qmax_x = None
248	self.qmin_x = None
249
250	self.npts = None
251	self.name = ""
252	self.multi_factor = None
253	self.magnetic_on = False
254	# enable smearering state
255	self.enable_smearer = False
256	self.disable_smearer = True
257	self.pinhole_smearer = False
258	self.slit_smearer = False
259	# weighting options
260	self.dI_noweight = False
261	self.dI_didata = True
262	self.dI_sqrdata = False
263	self.dI_idata = False
264	# disperity selection
265	self.enable_disp = False
266	self.disable_disp = True
267
268	# state of selected all check button
269	self.cb1 = False
270	# store value of chisqr
271	self.tcChi = None
272	self.version = (1, 0, 0)
273
274	def clone(self):
275	"""
276	Create a new copy of the current object
277	"""
278	model = None
279	if self.model is not None:
280	model = self.model.clone()
281	model.name = self.model.name
282	obj = PageState(model=model)
283	obj.file = copy.deepcopy(self.file)
284	obj.data = copy.deepcopy(self.data)
285	if self.data is not None:
286	self.data_name = self.data.name
287	obj.data_name = self.data_name
288	obj.is_data = self.is_data
289
290	obj.categorycombobox = self.categorycombobox
291	obj.formfactorcombobox = self.formfactorcombobox
292	obj.structurecombobox = self.structurecombobox
293
294	# obj.shape_rbutton = self.shape_rbutton
295	# obj.shape_indep_rbutton = self.shape_indep_rbutton
296	# obj.struct_rbutton = self.struct_rbutton
297	# obj.plugin_rbutton = self.plugin_rbutton
298
299	obj.manager = self.manager
300	obj.event_owner = self.event_owner
301	obj.disp_list = copy.deepcopy(self.disp_list)
302
303	obj.enable2D = copy.deepcopy(self.enable2D)
304	obj.parameters = copy.deepcopy(self.parameters)
305	obj.str_parameters = copy.deepcopy(self.str_parameters)
306	obj.fixed_param = copy.deepcopy(self.fixed_param)
307	obj.fittable_param = copy.deepcopy(self.fittable_param)
308	obj.orientation_params = copy.deepcopy(self.orientation_params)
309	obj.orientation_params_disp = \
310	copy.deepcopy(self.orientation_params_disp)
311	obj.enable_disp = copy.deepcopy(self.enable_disp)
312	obj.disable_disp = copy.deepcopy(self.disable_disp)
313	obj.tcChi = self.tcChi
314
315	if len(self.disp_obj_dict) > 0:
316	for k, v in self.disp_obj_dict.items():
317	obj.disp_obj_dict[k] = v
318	if len(self.disp_cb_dict) > 0:
319	for k, v in self.disp_cb_dict.items():
320	obj.disp_cb_dict[k] = v
321	if len(self.values) > 0:
322	for k, v in self.values.items():
323	obj.values[k] = v
324	if len(self.weights) > 0:
325	for k, v in self.weights.items():
326	obj.weights[k] = v
327	obj.enable_smearer = copy.deepcopy(self.enable_smearer)
328	obj.disable_smearer = copy.deepcopy(self.disable_smearer)
329	obj.pinhole_smearer = copy.deepcopy(self.pinhole_smearer)
330	obj.slit_smearer = copy.deepcopy(self.slit_smearer)
331	obj.dI_noweight = copy.deepcopy(self.dI_noweight)
332	obj.dI_didata = copy.deepcopy(self.dI_didata)
333	obj.dI_sqrdata = copy.deepcopy(self.dI_sqrdata)
334	obj.dI_idata = copy.deepcopy(self.dI_idata)
335	obj.dq_l = copy.deepcopy(self.dq_l)
336	obj.dq_r = copy.deepcopy(self.dq_r)
337	obj.dx_percent = copy.deepcopy(self.dx_percent)
338	obj.dx_old = copy.deepcopy(self.dx_old)
339	obj.dxl = copy.deepcopy(self.dxl)
340	obj.dxw = copy.deepcopy(self.dxw)
341	obj.disp_box = copy.deepcopy(self.disp_box)
342	obj.qmin = copy.deepcopy(self.qmin)
343	obj.qmax = copy.deepcopy(self.qmax)
344	obj.multi_factor = self.multi_factor
345	obj.magnetic_on = self.magnetic_on
346	obj.npts = copy.deepcopy(self.npts)
347	obj.cb1 = copy.deepcopy(self.cb1)
348	obj.version = copy.deepcopy(self.version)
349
350	for name, state in self.saved_states.items():
351	copy_name = copy.deepcopy(name)
352	copy_state = state.clone()
353	obj.saved_states[copy_name] = copy_state
354	return obj
355
356	def _old_first_model(self):
357	"""
358	Handle save states from 4.0.1 and before where the first item in the
359	selection boxes of category, formfactor and structurefactor were not
360	saved.
361	:return: None
362	"""
363	if self.categorycombobox == CUSTOM_MODEL_OLD:
364	self.categorycombobox = CUSTOM_MODEL
365	if self.formfactorcombobox == '':
366	FIRST_FORM = {
367	'Shapes' : 'BCCrystalModel',
368	'Uncategorized' : 'LineModel',
369	'StructureFactor' : 'HardsphereStructure',
370	'Ellipsoid' : 'core_shell_ellipsoid',
371	'Lamellae' : 'lamellar',
372	'Paracrystal' : 'bcc_paracrystal',
373	'Parallelepiped' : 'core_shell_parallelepiped',
374	'Shape Independent' : 'be_polyelectrolyte',
375	'Sphere' : 'adsorbed_layer',
376	'Structure Factor' : 'hardsphere',
377	CUSTOM_MODEL : ''
378	}
379	if self.categorycombobox == '':
380	if len(self.parameters) == 3:
381	self.categorycombobox = "Shape-Independent"
382	self.formfactorcombobox = 'PowerLawAbsModel'
383	elif len(self.parameters) == 9:
384	self.categorycombobox = 'Cylinder'
385	self.formfactorcombobox = 'barbell'
386	else:
387	msg = "Save state does not have enough information to load"
388	msg += " the all of the data."
389	logger.warning(msg=msg)
390	else:
391	self.formfactorcombobox = FIRST_FORM[self.categorycombobox]
392
393	@staticmethod
394	def param_remap_to_sasmodels_convert(params, is_string=False):
395	"""
396	Remaps the parameters for sasmodels conversion
397
398	:param params: list of parameters (likely self.parameters)
399	:return: remapped dictionary of parameters
400	"""
401	p = dict()
402	for fittable, name, value, _, uncert, lower, upper, units in params:
403	if not value:
404	value = np.nan
405	if not uncert or uncert[1] == '' or uncert[1] == 'None':
406	uncert[0] = False
407	uncert[1] = np.nan
408	if not upper or upper[1] == '' or upper[1] == 'None':
409	upper[0] = False
410	upper[1] = np.nan
411	if not lower or lower[1] == '' or lower[1] == 'None':
412	lower[0] = False
413	lower[1] = np.nan
414	if is_string:
415	p[name] = str(value)
416	else:
417	p[name] = float(value)
418	p[name + ".fittable"] = bool(fittable)
419	p[name + ".std"] = float(uncert[1])
420	p[name + ".upper"] = float(upper[1])
421	p[name + ".lower"] = float(lower[1])
422	p[name + ".units"] = units
423	return p
424
425	@staticmethod
426	def param_remap_from_sasmodels_convert(params):
427	"""
428	Converts {name : value} map back to [] param list
429	:param params: parameter map returned from sasmodels
430	:return: None
431	"""
432	p_map = []
433	for name, info in params.items():
434	if ".fittable" in name or ".std" in name or ".upper" in name or \
435	".lower" in name or ".units" in name:
436	pass
437	else:
438	fittable = params.get(name + ".fittable", True)
439	std = params.get(name + ".std", '0.0')
440	upper = params.get(name + ".upper", 'inf')
441	lower = params.get(name + ".lower", '-inf')
442	units = params.get(name + ".units")
443	if std is not None and std is not np.nan:
444	std = [True, str(std)]
445	else:
446	std = [False, '']
447	if lower is not None and lower is not np.nan:
448	lower = [True, str(lower)]
449	else:
450	lower = [True, '-inf']
451	if upper is not None and upper is not np.nan:
452	upper = [True, str(upper)]
453	else:
454	upper = [True, 'inf']
455	param_list = [bool(fittable), str(name), str(info),
456	"+/-", std, lower, upper, str(units)]
457	p_map.append(param_list)
458	return p_map
459
460	def _convert_to_sasmodels(self):
461	"""
462	Convert parameters to a form usable by sasmodels converter
463
464	:return: None
465	"""
466	# Create conversion dictionary to send to sasmodels
467	self._old_first_model()
468	p = self.param_remap_to_sasmodels_convert(self.parameters)
469	structurefactor, params = convert.convert_model(self.structurecombobox,
470	p, False, self.version)
471	formfactor, params = convert.convert_model(self.formfactorcombobox,
472	params, False, self.version)
473	if len(self.str_parameters) > 0:
474	str_pars = self.param_remap_to_sasmodels_convert(
475	self.str_parameters, True)
476	formfactor, str_params = convert.convert_model(
477	self.formfactorcombobox, str_pars, False, self.version)
478	for key, value in str_params.items():
479	params[key] = value
480
481	if self.formfactorcombobox == 'SphericalSLDModel':
482	self.multi_factor += 1
483	self.formfactorcombobox = formfactor
484	self.structurecombobox = structurefactor
485	self.parameters = []
486	self.parameters = self.param_remap_from_sasmodels_convert(params)
487
488	def _repr_helper(self, list, rep):
489	"""
490	Helper method to print a state
491	"""
492	for item in list:
493	rep += "parameter name: %s \n" % str(item[1])
494	rep += "value: %s\n" % str(item[2])
495	rep += "selected: %s\n" % str(item[0])
496	rep += "error displayed : %s \n" % str(item[4][0])
497	rep += "error value:%s \n" % str(item[4][1])
498	rep += "minimum displayed : %s \n" % str(item[5][0])
499	rep += "minimum value : %s \n" % str(item[5][1])
500	rep += "maximum displayed : %s \n" % str(item[6][0])
501	rep += "maximum value : %s \n" % str(item[6][1])
502	rep += "parameter unit: %s\n\n" % str(item[7])
503	return rep
504
505	def __repr__(self):
506	"""
507	output string for printing
508	"""
509	rep = "\nState name: %s\n" % self.file
510	t = time.localtime(self.timestamp)
511	time_str = time.strftime("%b %d %Y %H:%M:%S ", t)
512
513	rep += "State created: %s\n" % time_str
514	rep += "State form factor combobox selection: %s\n" % \
515	self.formfactorcombobox
516	rep += "State structure factor combobox selection: %s\n" % \
517	self.structurecombobox
518	rep += "is data : %s\n" % self.is_data
519	rep += "data's name : %s\n" % self.data_name
520	rep += "data's id : %s\n" % self.data_id
521	if self.model is not None:
522	m_name = self.model.__class__.__name__
523	if m_name == 'Model':
524	m_name = self.m_name
525	rep += "model name : %s\n" % m_name
526	else:
527	rep += "model name : None\n"
528	rep += "multi_factor : %s\n" % str(self.multi_factor)
529	rep += "magnetic_on : %s\n" % str(self.magnetic_on)
530	rep += "model type (Category) selected: %s\n" % self.categorycombobox
531	rep += "data : %s\n" % str(self.data)
532	rep += "Plotting Range: min: %s, max: %s, steps: %s\n" % \
533	(str(self.qmin), str(self.qmax), str(self.npts))
534	rep += "Dispersion selection : %s\n" % str(self.disp_box)
535	rep += "Smearing enable : %s\n" % str(self.enable_smearer)
536	rep += "Smearing disable : %s\n" % str(self.disable_smearer)
537	rep += "Pinhole smearer enable : %s\n" % str(self.pinhole_smearer)
538	rep += "Slit smearer enable : %s\n" % str(self.slit_smearer)
539	rep += "Dispersity enable : %s\n" % str(self.enable_disp)
540	rep += "Dispersity disable : %s\n" % str(self.disable_disp)
541	rep += "Slit smearer enable: %s\n" % str(self.slit_smearer)
542
543	rep += "dI_noweight : %s\n" % str(self.dI_noweight)
544	rep += "dI_didata : %s\n" % str(self.dI_didata)
545	rep += "dI_sqrdata : %s\n" % str(self.dI_sqrdata)
546	rep += "dI_idata : %s\n" % str(self.dI_idata)
547
548	rep += "2D enable : %s\n" % str(self.enable2D)
549	rep += "All parameters checkbox selected: %s\n" % self.cb1
550	rep += "Value of Chisqr : %s\n" % str(self.tcChi)
551	rep += "dq_l : %s\n" % self.dq_l
552	rep += "dq_r : %s\n" % self.dq_r
553	rep += "dx_percent : %s\n" % str(self.dx_percent)
554	rep += "dxl : %s\n" % str(self.dxl)
555	rep += "dxw : %s\n" % str(self.dxw)
556	rep += "model : %s\n\n" % str(self.model)
557	temp_parameters = []
558	temp_fittable_param = []
559	if self.data.__class__.__name__ == "Data2D":
560	self.is_2D = True
561	else:
562	self.is_2D = False
563	if self.data is not None:
564	if not self.is_2D:
565	for item in self.parameters:
566	if item not in self.orientation_params:
567	temp_parameters.append(item)
568	for item in self.fittable_param:
569	if item not in self.orientation_params_disp:
570	temp_fittable_param.append(item)
571	else:
572	temp_parameters = self.parameters
573	temp_fittable_param = self.fittable_param
574
575	rep += "number parameters(self.parameters): %s\n" % \
576	len(temp_parameters)
577	rep = self._repr_helper(list=temp_parameters, rep=rep)
578	rep += "number str_parameters(self.str_parameters): %s\n" % \
579	len(self.str_parameters)
580	rep = self._repr_helper(list=self.str_parameters, rep=rep)
581	rep += "number fittable_param(self.fittable_param): %s\n" % \
582	len(temp_fittable_param)
583	rep = self._repr_helper(list=temp_fittable_param, rep=rep)
584	return rep
585
586	def _get_report_string(self):
587	"""
588	Get the values (strings) from __str__ for report
589	"""
590	# Dictionary of the report strings
591	repo_time = ""
592	model_name = ""
593	title = ""
594	title_name = ""
595	file_name = ""
596	param_string = ""
597	paramval_string = ""
598	chi2_string = ""
599	q_range = ""
600	strings = self.__repr__()
601	fixed_parameter = False
602	lines = strings.split('\n')
603	# get all string values from __str__()
604	for line in lines:
605	# Skip lines which are not key: value pairs, which includes
606	# blank lines and freeform notes in SASNotes fields.
607	if not ':' in line:
608	#msg = "Report string expected 'name: value' but got %r" % line
609	#logger.error(msg)
610	continue
611
612	name, value = [s.strip() for s in line.split(":", 1)]
613	if name == "State created":
614	repo_time = value
615	elif name == "parameter name":
616	val_name = value.split(".")
617	if len(val_name) > 1:
618	if val_name[1].count("width"):
619	param_string += value + ','
620	else:
621	continue
622	else:
623	param_string += value + ','
624	elif name == "value":
625	param_string += value + ','
626	elif name == "selected":
627	# remember if it is fixed when reporting error value
628	fixed_parameter = (value == u'False')
629	elif name == "error value":
630	if fixed_parameter:
631	param_string += '(fixed),'
632	else:
633	param_string += value + ','
634	elif name == "parameter unit":
635	param_string += value + ':'
636	elif name == "Value of Chisqr":
637	chi2 = ("Chi2/Npts = " + value)
638	chi2_string = CENTRE % chi2
639	elif name == "Title":
640	if len(value.strip()) == 0:
641	continue
642	title = value + " [" + repo_time + "]"
643	title_name = HEADER % title
644	elif name == "data":
645	try:
646	# parsing "data : File: filename [mmm dd hh:mm]"
647	name = value.split(':', 1)[1].strip()
648	file_value = "File name:" + name
649	#Truncating string so print doesn't complain of being outside margins
650	if sys.platform != "win32":
651	MAX_STRING_LENGHT = 50
652	if len(file_value) > MAX_STRING_LENGHT:
653	file_value = "File name:.."+file_value[-MAX_STRING_LENGHT+10:]
654	file_name = CENTRE % file_value
655	if len(title) == 0:
656	title = name + " [" + repo_time + "]"
657	title_name = HEADER % title
658	except Exception:
659	msg = "While parsing 'data: ...'\n"
660	logger.error(msg + traceback.format_exc())
661	elif name == "model name":
662	try:
663	modelname = "Model name:" + value
664	except Exception:
665	modelname = "Model name:" + " NAN"
666	model_name = CENTRE % modelname
667
668	elif name == "Plotting Range":
669	try:
670	parts = value.split(':')
671	q_range = parts[0] + " = " + parts[1] \
672	+ " = " + parts[2].split(",")[0]
673	q_name = ("Q Range: " + q_range)
674	q_range = CENTRE % q_name
675	except Exception:
676	msg = "While parsing 'Plotting Range: ...'\n"
677	logger.error(msg + traceback.format_exc())
678
679	paramval = ""
680	for lines in param_string.split(":"):
681	line = lines.split(",")
682	if len(lines) > 0:
683	param = line[0]
684	param += " = " + line[1]
685	if len(line[2].split()) > 0 and not line[2].count("None"):
686	param += " +- " + line[2]
687	if len(line[3].split()) > 0 and not line[3].count("None"):
688	param += " " + line[3]
689	if not paramval.count(param):
690	paramval += param + "\n"
691	paramval_string += CENTRE % param + "\n"
692
693	text_string = "\n\n\n%s\n\n%s\n%s\n%s\n\n%s" % \
694	(title, file, q_name, chi2, paramval)
695
696	title_name = self._check_html_format(title_name)
697	file_name = self._check_html_format(file_name)
698	title = self._check_html_format(title)
699
700	html_string = title_name + "\n" + file_name + \
701	"\n" + model_name + \
702	"\n" + q_range + \
703	"\n" + chi2_string + \
704	"\n" + ELINE + \
705	"\n" + paramval_string + \
706	"\n" + ELINE + \
707	"\n" + FEET_1 % title
708
709	return html_string, text_string, title
710
711	def _check_html_format(self, name):
712	"""
713	Check string '%' for html format
714	"""
715	if name.count('%'):
716	name = name.replace('%', '&#37')
717
718	return name
719
720	def report(self, fig_urls):
721	"""
722	Invoke report dialog panel
723
724	: param figs: list of pylab figures [list]
725	"""
726	# get the strings for report
727	html_str, text_str, title = self._get_report_string()
728	# Allow 2 figures to append
729	#Constraining image width for OSX and linux, so print doesn't complain of being outside margins
730	if sys.platform == "win32":
731	image_links = [FEET_2%fig for fig in fig_urls]
732	else:
733	image_links = [FEET_2_unix%fig for fig in fig_urls]
734	# final report html strings
735	report_str = html_str + ELINE.join(image_links)
736	report_str += FEET_3
737	return report_str, text_str
738
739	def _to_xml_helper(self, thelist, element, newdoc):
740	"""
741	Helper method to create xml file for saving state
742	"""
743	for item in thelist:
744	sub_element = newdoc.createElement('parameter')
745	sub_element.setAttribute('name', str(item[1]))
746	sub_element.setAttribute('value', str(item[2]))
747	sub_element.setAttribute('selected_to_fit', str(item[0]))
748	sub_element.setAttribute('error_displayed', str(item[4][0]))
749	sub_element.setAttribute('error_value', str(item[4][1]))
750	sub_element.setAttribute('minimum_displayed', str(item[5][0]))
751	sub_element.setAttribute('minimum_value', str(item[5][1]))
752	sub_element.setAttribute('maximum_displayed', str(item[6][0]))
753	sub_element.setAttribute('maximum_value', str(item[6][1]))
754	sub_element.setAttribute('unit', str(item[7]))
755	element.appendChild(sub_element)
756
757	def to_xml(self, file="fitting_state.fitv", doc=None,
758	entry_node=None, batch_fit_state=None):
759	"""
760	Writes the state of the fit panel to file, as XML.
761
762	Compatible with standalone writing, or appending to an
763	already existing XML document. In that case, the XML document is
764	required. An optional entry node in the XML document may also be given.
765
766	:param file: file to write to
767	:param doc: XML document object [optional]
768	:param entry_node: XML node within the XML document at which we
769	will append the data [optional]
770	:param batch_fit_state: simultaneous fit state
771	"""
772	# Check whether we have to write a standalone XML file
773	if doc is None:
774	impl = getDOMImplementation()
775	doc_type = impl.createDocumentType(FITTING_NODE_NAME, "1.0", "1.0")
776	newdoc = impl.createDocument(None, FITTING_NODE_NAME, doc_type)
777	top_element = newdoc.documentElement
778	else:
779	# We are appending to an existing document
780	newdoc = doc
781	try:
782	top_element = newdoc.createElement(FITTING_NODE_NAME)
783	except Exception:
784	string = etree.tostring(doc, pretty_print=True)
785	newdoc = parseString(string)
786	top_element = newdoc.createElement(FITTING_NODE_NAME)
787	if entry_node is None:
788	newdoc.documentElement.appendChild(top_element)
789	else:
790	try:
791	entry_node.appendChild(top_element)
792	except Exception:
793	node_name = entry_node.tag
794	node_list = newdoc.getElementsByTagName(node_name)
795	entry_node = node_list.item(0)
796	entry_node.appendChild(top_element)
797
798	attr = newdoc.createAttribute("version")
799	attr.nodeValue = SASVIEW_VERSION
800	# attr.nodeValue = '1.0'
801	top_element.setAttributeNode(attr)
802
803	# File name
804	element = newdoc.createElement("filename")
805	if self.file is not None:
806	element.appendChild(newdoc.createTextNode(str(self.file)))
807	else:
808	element.appendChild(newdoc.createTextNode(str(file)))
809	top_element.appendChild(element)
810
811	element = newdoc.createElement("timestamp")
812	element.appendChild(newdoc.createTextNode(time.ctime(self.timestamp)))
813	attr = newdoc.createAttribute("epoch")
814	attr.nodeValue = str(self.timestamp)
815	element.setAttributeNode(attr)
816	top_element.appendChild(element)
817
818	# Inputs
819	inputs = newdoc.createElement("Attributes")
820	top_element.appendChild(inputs)
821
822	if self.data is not None and hasattr(self.data, "group_id"):
823	self.data_group_id = self.data.group_id
824	if self.data is not None and hasattr(self.data, "is_data"):
825	self.is_data = self.data.is_data
826	if self.data is not None:
827	self.data_name = self.data.name
828	if self.data is not None and hasattr(self.data, "id"):
829	self.data_id = self.data.id
830
831	for item in LIST_OF_DATA_ATTRIBUTES:
832	element = newdoc.createElement(item[0])
833	element.setAttribute(item[0], str(getattr(self, item[1])))
834	inputs.appendChild(element)
835
836	for item in LIST_OF_STATE_ATTRIBUTES:
837	element = newdoc.createElement(item[0])
838	element.setAttribute(item[0], str(getattr(self, item[1])))
839	inputs.appendChild(element)
840
841	# For self.values ={ disp_param_name: [vals,...],...}
842	# and for self.weights ={ disp_param_name: [weights,...],...}
843	for item in LIST_OF_MODEL_ATTRIBUTES:
844	element = newdoc.createElement(item[0])
845	value_list = getattr(self, item[1])
846	for key, value in value_list.items():
847	sub_element = newdoc.createElement(key)
848	sub_element.setAttribute('name', str(key))
849	for val in value:
850	sub_element.appendChild(newdoc.createTextNode(str(val)))
851
852	element.appendChild(sub_element)
853	inputs.appendChild(element)
854
855	# Create doc for the dictionary of self.disp_obj_dic
856	for tagname, varname, tagtype in DISPERSION_LIST:
857	element = newdoc.createElement(tagname)
858	value_list = getattr(self, varname)
859	for key, value in value_list.items():
860	sub_element = newdoc.createElement(key)
861	sub_element.setAttribute('name', str(key))
862	sub_element.setAttribute('value', str(value))
863	element.appendChild(sub_element)
864	inputs.appendChild(element)
865
866	for item in LIST_OF_STATE_PARAMETERS:
867	element = newdoc.createElement(item[0])
868	self._to_xml_helper(thelist=getattr(self, item[1]),
869	element=element, newdoc=newdoc)
870	inputs.appendChild(element)
871
872	# Combined and Simultaneous Fit Parameters
873	if batch_fit_state is not None:
874	batch_combo = newdoc.createElement('simultaneous_fit')
875	top_element.appendChild(batch_combo)
876
877	# Simultaneous Fit Number For Linking Later
878	element = newdoc.createElement('sim_fit_number')
879	element.setAttribute('fit_number', str(batch_fit_state.fit_page_no))
880	batch_combo.appendChild(element)
881
882	# Save constraints
883	constraints = newdoc.createElement('constraints')
884	batch_combo.appendChild(constraints)
885	for constraint in batch_fit_state.constraints_list:
886	if constraint.model_cbox.GetValue() != "":
887	# model_cbox, param_cbox, egal_txt, constraint,
888	# btRemove, sizer
889	doc_cons = newdoc.createElement('constraint')
890	doc_cons.setAttribute('model_cbox',
891	str(constraint.model_cbox.GetValue()))
892	doc_cons.setAttribute('param_cbox',
893	str(constraint.param_cbox.GetValue()))
894	doc_cons.setAttribute('egal_txt',
895	str(constraint.egal_txt.GetLabel()))
896	doc_cons.setAttribute('constraint',
897	str(constraint.constraint.GetValue()))
898	constraints.appendChild(doc_cons)
899
900	# Save all models
901	models = newdoc.createElement('model_list')
902	batch_combo.appendChild(models)
903	for model in batch_fit_state.model_list:
904	doc_model = newdoc.createElement('model_list_item')
905	doc_model.setAttribute('checked', str(model[0].GetValue()))
906	keys = model[1].keys()
907	doc_model.setAttribute('name', str(keys[0]))
908	values = model[1].get(keys[0])
909	doc_model.setAttribute('fit_number', str(model[2]))
910	doc_model.setAttribute('fit_page_source', str(model[3]))
911	doc_model.setAttribute('model_name', str(values.model.id))
912	models.appendChild(doc_model)
913
914	# Select All Checkbox
915	element = newdoc.createElement('select_all')
916	if batch_fit_state.select_all:
917	element.setAttribute('checked', 'True')
918	else:
919	element.setAttribute('checked', 'False')
920	batch_combo.appendChild(element)
921
922	# Save the file
923	if doc is None:
924	fd = open(file, 'w')
925	fd.write(newdoc.toprettyxml())
926	fd.close()
927	return None
928	else:
929	return newdoc
930
931	def _from_xml_helper(self, node, list):
932	"""
933	Helper function to write state to xml
934	"""
935	for item in node:
936	name = item.get('name')
937	value = item.get('value')
938	selected_to_fit = (item.get('selected_to_fit') == "True")
939	error_displayed = (item.get('error_displayed') == "True")
940	error_value = item.get('error_value')
941	minimum_displayed = (item.get('minimum_displayed') == "True")
942	minimum_value = item.get('minimum_value')
943	maximum_displayed = (item.get('maximum_displayed') == "True")
944	maximum_value = item.get('maximum_value')
945	unit = item.get('unit')
946	list.append([selected_to_fit, name, value, "+/-",
947	[error_displayed, error_value],
948	[minimum_displayed, minimum_value],
949	[maximum_displayed, maximum_value], unit])
950
951	def from_xml(self, file=None, node=None):
952	"""
953	Load fitting state from a file
954
955	:param file: .fitv file
956	:param node: node of a XML document to read from
957	"""
958	if file is not None:
959	msg = "PageState no longer supports non-CanSAS"
960	msg += " format for fitting files"
961	raise RuntimeError(msg)
962
963	if node.get('version'):
964	# Get the version for model conversion purposes
965	x = re.sub('[^\d.]', '', node.get('version'))
966	self.version = tuple(int(e) for e in str.split(x, "."))
967	# The tuple must be at least 3 items long
968	while len(self.version) < 3:
969	ver_list = list(self.version)
970	ver_list.append(0)
971	self.version = tuple(ver_list)
972
973	# Get file name
974	entry = get_content('ns:filename', node)
975	if entry is not None and entry.text:
976	self.file = entry.text.strip()
977	else:
978	self.file = ''
979
980	# Get time stamp
981	entry = get_content('ns:timestamp', node)
982	if entry is not None and entry.get('epoch'):
983	try:
984	self.timestamp = float(entry.get('epoch'))
985	except Exception:
986	msg = "PageState.fromXML: Could not"
987	msg += " read timestamp\n %s" % sys.exc_value
988	logger.error(msg)
989
990	if entry is not None:
991	# Parse fitting attributes
992	entry = get_content('ns:Attributes', node)
993	for item in LIST_OF_DATA_ATTRIBUTES:
994	node = get_content('ns:%s' % item[0], entry)
995	setattr(self, item[0], parse_entry_helper(node, item))
996
997	dx_old_node = get_content('ns:%s' % 'dx_min', entry)
998	for item in LIST_OF_STATE_ATTRIBUTES:
999	if item[0] == "dx_percent" and dx_old_node is not None:
1000	dxmin = ["dx_min", "dx_min", "float"]
1001	setattr(self, item[0], parse_entry_helper(dx_old_node,
1002	dxmin))
1003	self.dx_old = True
1004	else:
1005	node = get_content('ns:%s' % item[0], entry)
1006	setattr(self, item[0], parse_entry_helper(node, item))
1007
1008	for item in LIST_OF_STATE_PARAMETERS:
1009	node = get_content("ns:%s" % item[0], entry)
1010	self._from_xml_helper(node=node,
1011	list=getattr(self, item[1]))
1012
1013	# Recover disp_obj_dict from xml file
1014	self.disp_obj_dict = {}
1015	for tagname, varname, tagtype in DISPERSION_LIST:
1016	node = get_content("ns:%s" % tagname, entry)
1017	for attr in node:
1018	parameter = str(attr.get('name'))
1019	value = attr.get('value')
1020	if value.startswith("<"):
1021	try:
1022	# <path.to.NamedDistribution object/instance...>
1023	cls_name = value[1:].split()[0].split('.')[-1]
1024	cls = getattr(sasmodels.weights, cls_name)
1025	value = cls.type
1026	except Exception:
1027	base = "unable to load distribution %r for %s"
1028	logger.error(base, value, parameter)
1029	continue
1030	disp_obj_dict = getattr(self, varname)
1031	disp_obj_dict[parameter] = value
1032
1033	# get self.values and self.weights dic. if exists
1034	for tagname, varname in LIST_OF_MODEL_ATTRIBUTES:
1035	node = get_content("ns:%s" % tagname, entry)
1036	dic = {}
1037	value_list = []
1038	for par in node:
1039	name = par.get('name')
1040	values = par.text.split()
1041	# Get lines only with numbers
1042	for line in values:
1043	try:
1044	val = float(line)
1045	value_list.append(val)
1046	except Exception:
1047	# pass if line is empty (it happens)
1048	msg = ("Error reading %r from %s %s\n"
1049	% (line, tagname, name))
1050	logger.error(msg + traceback.format_exc())
1051	dic[name] = np.array(value_list)
1052	setattr(self, varname, dic)
1053
1054	class SimFitPageState(object):
1055	"""
1056	State of the simultaneous fit page for saving purposes
1057	"""
1058
1059	def __init__(self):
1060	# Sim Fit Page Number
1061	self.fit_page_no = None
1062	# Select all data
1063	self.select_all = False
1064	# Data sets sent to fit page
1065	self.model_list = []
1066	# Data sets to be fit
1067	self.model_to_fit = []
1068	# Number of constraints
1069	self.no_constraint = 0
1070	# Dictionary of constraints
1071	self.constraint_dict = {}
1072	# List of constraints
1073	self.constraints_list = []
1074
1075	def __repr__(self):
1076	# TODO: should use __str__, not __repr__ (similarly for PageState)
1077	# TODO: could use a nicer representation
1078	repr = """\
1079	fit page number : %(fit_page_no)s
1080	select all : %(select_all)s
1081	model_list : %(model_list)s
1082	model to fit : %(model_to_fit)s
1083	number of construsts : %(no_constraint)s
1084	constraint dict : %(constraint_dict)s
1085	constraints list : %(constraints_list)s
1086	"""%self.__dict__
1087	return repr
1088
1089	class Reader(CansasReader):
1090	"""
1091	Class to load a .fitv fitting file
1092	"""
1093	# File type
1094	type_name = "Fitting"
1095
1096	# Wildcards
1097	type = ["Fitting files (.fitv)\|.fitv"
1098	"SASView file (.svs)\|.svs"]
1099	# List of allowed extensions
1100	ext = ['.fitv', '.FITV', '.svs', 'SVS']
1101
1102	def __init__(self, call_back=None, cansas=True):
1103	CansasReader.__init__(self)
1104	"""
1105	Initialize the call-back method to be called
1106	after we load a file
1107
1108	:param call_back: call-back method
1109	:param cansas: True = files will be written/read in CanSAS format
1110	False = write CanSAS format
1111
1112	"""
1113	# Call back method to be executed after a file is read
1114	self.call_back = call_back
1115	# CanSAS format flag
1116	self.cansas = cansas
1117	self.state = None
1118	# batch fitting params for saving
1119	self.batchfit_params = []
1120
1121	def get_state(self):
1122	return self.state
1123
1124	def read(self, path):
1125	"""
1126	Load a new P(r) inversion state from file
1127
1128	:param path: file path
1129
1130	"""
1131	if self.cansas:
1132	return self._read_cansas(path)
1133
1134	def _parse_state(self, entry):
1135	"""
1136	Read a fit result from an XML node
1137
1138	:param entry: XML node to read from
1139	:return: PageState object
1140	"""
1141	# Create an empty state
1142	state = None
1143	# Locate the P(r) node
1144	try:
1145	nodes = entry.xpath('ns:%s' % FITTING_NODE_NAME,
1146	namespaces=CANSAS_NS)
1147	if nodes:
1148	# Create an empty state
1149	state = PageState()
1150	state.from_xml(node=nodes[0])
1151
1152	except Exception:
1153	logger.info("XML document does not contain fitting information.\n"
1154	+ traceback.format_exc())
1155
1156	return state
1157
1158	def _parse_simfit_state(self, entry):
1159	"""
1160	Parses the saved data for a simultaneous fit
1161	:param entry: XML object to read from
1162	:return: XML object for a simultaneous fit or None
1163	"""
1164	nodes = entry.xpath('ns:%s' % FITTING_NODE_NAME,
1165	namespaces=CANSAS_NS)
1166	if nodes:
1167	simfitstate = nodes[0].xpath('ns:simultaneous_fit',
1168	namespaces=CANSAS_NS)
1169	if simfitstate:
1170	sim_fit_state = SimFitPageState()
1171	simfitstate_0 = simfitstate[0]
1172	all = simfitstate_0.xpath('ns:select_all',
1173	namespaces=CANSAS_NS)
1174	atts = all[0].attrib
1175	checked = atts.get('checked')
1176	sim_fit_state.select_all = bool(checked)
1177	model_list = simfitstate_0.xpath('ns:model_list',
1178	namespaces=CANSAS_NS)
1179	model_list_items = model_list[0].xpath('ns:model_list_item',
1180	namespaces=CANSAS_NS)
1181	for model in model_list_items:
1182	attrs = model.attrib
1183	sim_fit_state.model_list.append(attrs)
1184
1185	constraints = simfitstate_0.xpath('ns:constraints',
1186	namespaces=CANSAS_NS)
1187	constraint_list = constraints[0].xpath('ns:constraint',
1188	namespaces=CANSAS_NS)
1189	for constraint in constraint_list:
1190	attrs = constraint.attrib
1191	sim_fit_state.constraints_list.append(attrs)
1192
1193	return sim_fit_state
1194	else:
1195	return None
1196
1197	def _parse_save_state_entry(self, dom):
1198	"""
1199	Parse a SASentry
1200
1201	:param node: SASentry node
1202
1203	:return: Data1D/Data2D object
1204
1205	"""
1206	node = dom.xpath('ns:data_class', namespaces=CANSAS_NS)
1207	return_value, _ = self._parse_entry(dom)
1208	return return_value, _
1209
1210	def _read_cansas(self, path):
1211	"""
1212	Load data and fitting information from a CanSAS XML file.
1213
1214	:param path: file path
1215	:return: Data1D object if a single SASentry was found,
1216	or a list of Data1D objects if multiple entries were found,
1217	or None of nothing was found
1218	:raise RuntimeError: when the file can't be opened
1219	:raise ValueError: when the length of the data vectors are inconsistent
1220	"""
1221	output = []
1222	simfitstate = None
1223	basename = os.path.basename(path)
1224	root, extension = os.path.splitext(basename)
1225	ext = extension.lower()
1226	try:
1227	if os.path.isfile(path):
1228	if ext in self.ext or ext == '.xml':
1229	tree = etree.parse(path, parser=etree.ETCompatXMLParser())
1230	# Check the format version number
1231	# Specifying the namespace will take care of the file
1232	# format version
1233	root = tree.getroot()
1234	entry_list = root.xpath('ns:SASentry',
1235	namespaces=CANSAS_NS)
1236	for entry in entry_list:
1237	fitstate = self._parse_state(entry)
1238	# state could be None when .svs file is loaded
1239	# in this case, skip appending to output
1240	if fitstate is not None:
1241	try:
1242	sas_entry, _ = self._parse_save_state_entry(
1243	entry)
1244	except:
1245	raise
1246	sas_entry.meta_data['fitstate'] = fitstate
1247	sas_entry.filename = fitstate.file
1248	output.append(sas_entry)
1249
1250	else:
1251	#self.call_back(format=ext)
1252	raise RuntimeError("%s is not a file" % path)
1253
1254	# Return output consistent with the loader's api
1255	if len(output) == 0:
1256	#self.call_back(state=None, datainfo=None, format=ext)
1257	return None
1258	else:
1259	states=[]
1260	for data in output:
1261	# Call back to post the new state
1262	state = data.meta_data['fitstate']
1263	t = time.localtime(state.timestamp)
1264	time_str = time.strftime("%b %d %H:%M", t)
1265	# Check that no time stamp is already appended
1266	max_char = state.file.find("[")
1267	if max_char < 0:
1268	max_char = len(state.file)
1269	original_fname = state.file[0:max_char]
1270	state.file = original_fname + ' [' + time_str + ']'
1271
1272	if state is not None and state.is_data is not None:
1273	data.is_data = state.is_data
1274
1275	data.filename = state.file
1276	state.data = data
1277	state.data.name = data.filename # state.data_name
1278	state.data.id = state.data_id
1279	if state.is_data is not None:
1280	state.data.is_data = state.is_data
1281	if data.run_name is not None and len(data.run_name) != 0:
1282	if isinstance(data.run_name, dict):
1283	# Note: key order in dict is not guaranteed, so sort
1284	name = list(data.run_name.keys())[0]
1285	else:
1286	name = data.run_name
1287	else:
1288	name = original_fname
1289	state.data.group_id = name
1290	state.version = fitstate.version
1291	# store state in fitting
1292	#self.call_back(state=state, datainfo=data, format=ext)
1293	self.state = state
1294	states.append(state)
1295	simfitstate = self._parse_simfit_state(entry)
1296	if simfitstate is not None:
1297	#self.call_back(state=simfitstate)
1298	states.append(simfitstate)
1299	return (output, states)
1300	except:
1301	#self.call_back(format=ext)
1302	raise
1303
1304	def write(self, filename, datainfo=None, fitstate=None):
1305	"""
1306	Write the content of a Data1D as a CanSAS XML file only for standalone
1307
1308	:param filename: name of the file to write
1309	:param datainfo: Data1D object
1310	:param fitstate: PageState object
1311
1312	"""
1313	# Sanity check
1314	if self.cansas:
1315	# Add fitting information to the XML document
1316	doc = self.write_toXML(datainfo, fitstate)
1317	# Write the XML document
1318	else:
1319	doc = fitstate.to_xml(file=filename)
1320
1321	# Save the document no matter the type
1322	fd = open(filename, 'w')
1323	fd.write(doc.toprettyxml())
1324	fd.close()
1325
1326	def write_toXML(self, datainfo=None, state=None, batchfit=None):
1327	"""
1328	Write toXML, a helper for write(),
1329	could be used by guimanager._on_save()
1330
1331	: return: xml doc
1332	"""
1333
1334	self.batchfit_params = batchfit
1335	if state.data is None or not state.data.is_data:
1336	return None
1337	# make sure title and data run are filled.
1338	if state.data.title is None or state.data.title == '':
1339	state.data.title = state.data.name
1340	if state.data.run_name is None or state.data.run_name == {}:
1341	state.data.run = [str(state.data.name)]
1342	state.data.run_name[0] = state.data.name
1343
1344	data = state.data
1345	doc, sasentry = self._to_xml_doc(data)
1346
1347	if state is not None:
1348	doc = state.to_xml(doc=doc, file=data.filename, entry_node=sasentry,
1349	batch_fit_state=self.batchfit_params)
1350
1351	return doc
1352
1353	# Simple html report template
1354	HEADER = "<html>\n"
1355	HEADER += "<head>\n"
1356	HEADER += "<meta http-equiv=Content-Type content='text/html; "
1357	HEADER += "charset=windows-1252'> \n"
1358	HEADER += "<meta name=Generator >\n"
1359	HEADER += "</head>\n"
1360	HEADER += "<body lang=EN-US>\n"
1361	HEADER += "<div class=WordSection1>\n"
1362	HEADER += "<p class=MsoNormal><b><span ><center><font size='4' >"
1363	HEADER += "%s</font></center></span></center></b></p>"
1364	HEADER += "<p class=MsoNormal> </p>"
1365	PARA = "<p class=MsoNormal><font size='4' > %s \n"
1366	PARA += "</font></p>"
1367	CENTRE = "<p class=MsoNormal><center><font size='4' > %s \n"
1368	CENTRE += "</font></center></p>"
1369	FEET_1 = \
1370	"""
1371	<p class=MsoNormal> </p>
1372	<br>
1373	<p class=MsoNormal><b><span ><center> <font size='4' > Graph
1374	</font></span></center></b></p>
1375	<p class=MsoNormal> </p>
1376	<center>
1377	<br><font size='4' >Model Computation</font>
1378	<br><font size='4' >Data: "%s"</font><br>
1379	"""
1380	FEET_2 = \
1381	"""<img src="%s"></img>
1382	"""
1383	FEET_2_unix = \
1384	"""<img src="%s" width="540"></img>
1385	"""
1386	FEET_3 = \
1387	"""</center>
1388	</div>
1389	</body>
1390	</html>
1391	"""
1392	ELINE = """<p class=MsoNormal> </p>
1393	"""

Note: See TracBrowser for help on using the repository browser.

SasView

source: sasview/src/sas/sascalc/fit/pagestate.py @ ccfe03b

Download in other formats: