[3b3b40b] | 1 | # global |
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| 2 | import sys |
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| 3 | import os |
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| 4 | import datetime |
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| 5 | import numpy as np |
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| 6 | import logging |
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[3790f7f] | 7 | import traceback |
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[3b3b40b] | 8 | |
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| 9 | from PyQt5 import QtWidgets |
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| 10 | |
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| 11 | from sas.sascalc.fit import models |
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| 12 | |
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| 13 | from sas.qtgui.Utilities.UI.TabbedModelEditor import Ui_TabbedModelEditor |
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| 14 | from sas.qtgui.Utilities.PluginDefinition import PluginDefinition |
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| 15 | from sas.qtgui.Utilities.ModelEditor import ModelEditor |
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| 16 | |
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| 17 | class TabbedModelEditor(QtWidgets.QDialog, Ui_TabbedModelEditor): |
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| 18 | """ |
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| 19 | Model editor "container" class describing interaction between |
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| 20 | plugin definition widget and model editor widget. |
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| 21 | Once the model is defined, it can be saved as a plugin. |
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| 22 | """ |
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| 23 | # Signals for intertab communication plugin -> editor |
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| 24 | def __init__(self, parent=None, edit_only=False): |
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| 25 | super(TabbedModelEditor, self).__init__() |
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| 26 | |
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| 27 | self.parent = parent |
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| 28 | |
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| 29 | self.setupUi(self) |
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| 30 | |
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| 31 | # globals |
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| 32 | self.filename = "" |
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| 33 | self.window_title = self.windowTitle() |
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| 34 | self.edit_only = edit_only |
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| 35 | self.is_modified = False |
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| 36 | |
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| 37 | self.addWidgets() |
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| 38 | |
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| 39 | self.addSignals() |
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| 40 | |
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| 41 | def addWidgets(self): |
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| 42 | """ |
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| 43 | Populate tabs with widgets |
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| 44 | """ |
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| 45 | # Set up widget enablement/visibility |
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| 46 | self.cmdLoad.setVisible(self.edit_only) |
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| 47 | |
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| 48 | # Add tabs |
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| 49 | # Plugin definition widget |
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| 50 | self.plugin_widget = PluginDefinition(self) |
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| 51 | self.tabWidget.addTab(self.plugin_widget, "Plugin Definition") |
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| 52 | self.setPluginActive(True) |
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| 53 | |
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| 54 | self.editor_widget = ModelEditor(self) |
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| 55 | # Initially, nothing in the editor |
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| 56 | self.editor_widget.setEnabled(False) |
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| 57 | self.tabWidget.addTab(self.editor_widget, "Model editor") |
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| 58 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).setEnabled(False) |
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| 59 | |
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| 60 | if self.edit_only: |
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| 61 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).setText("Save") |
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| 62 | # Hide signals from the plugin widget |
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| 63 | self.plugin_widget.blockSignals(True) |
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| 64 | # and hide the tab/widget itself |
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| 65 | self.tabWidget.removeTab(0) |
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| 66 | |
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| 67 | def addSignals(self): |
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| 68 | """ |
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| 69 | Define slots for common widget signals |
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| 70 | """ |
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| 71 | # buttons |
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| 72 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).clicked.connect(self.onApply) |
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| 73 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Cancel).clicked.connect(self.onCancel) |
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| 74 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Help).clicked.connect(self.onHelp) |
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| 75 | self.cmdLoad.clicked.connect(self.onLoad) |
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| 76 | # signals from tabs |
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| 77 | self.editor_widget.modelModified.connect(self.editorModelModified) |
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[3790f7f] | 78 | self.plugin_widget.txtName.editingFinished.connect(self.pluginTitleSet) |
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[3b3b40b] | 79 | |
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| 80 | def setPluginActive(self, is_active=True): |
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| 81 | """ |
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| 82 | Enablement control for all the controls on the simple plugin editor |
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| 83 | """ |
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| 84 | self.plugin_widget.setEnabled(is_active) |
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| 85 | |
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| 86 | def closeEvent(self, event): |
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| 87 | """ |
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| 88 | Overwrite the close even to assure intent |
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| 89 | """ |
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| 90 | if self.is_modified: |
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| 91 | ret = self.onModifiedExit() |
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| 92 | if ret == QtWidgets.QMessageBox.Cancel: |
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| 93 | return |
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| 94 | elif ret == QtWidgets.QMessageBox.Save: |
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| 95 | self.updateFromEditor() |
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| 96 | event.accept() |
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| 97 | |
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| 98 | def onLoad(self): |
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| 99 | """ |
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| 100 | Loads a model plugin file |
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| 101 | """ |
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| 102 | plugin_location = models.find_plugins_dir() |
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| 103 | filename = QtWidgets.QFileDialog.getOpenFileName( |
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| 104 | self, |
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| 105 | 'Open Plugin', |
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| 106 | plugin_location, |
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| 107 | 'SasView Plugin Model (*.py)', |
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| 108 | None, |
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| 109 | QtWidgets.QFileDialog.DontUseNativeDialog)[0] |
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| 110 | |
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| 111 | # Load the file |
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| 112 | if not filename: |
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| 113 | logging.info("No data file chosen.") |
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| 114 | return |
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| 115 | |
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| 116 | self.loadFile(filename) |
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| 117 | |
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| 118 | def loadFile(self, filename): |
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| 119 | """ |
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| 120 | Performs the load operation and updates the view |
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| 121 | """ |
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| 122 | self.editor_widget.blockSignals(True) |
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| 123 | with open(filename, 'r') as plugin: |
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| 124 | self.editor_widget.txtEditor.setPlainText(plugin.read()) |
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| 125 | self.editor_widget.setEnabled(True) |
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| 126 | self.editor_widget.blockSignals(False) |
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| 127 | self.filename, _ = os.path.splitext(os.path.basename(filename)) |
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| 128 | |
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| 129 | self.setWindowTitle(self.window_title + " - " + self.filename) |
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| 130 | |
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| 131 | def onModifiedExit(self): |
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| 132 | msg_box = QtWidgets.QMessageBox(self) |
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| 133 | msg_box.setWindowTitle("SasView Model Editor") |
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| 134 | msg_box.setText("The document has been modified.") |
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| 135 | msg_box.setInformativeText("Do you want to save your changes?") |
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| 136 | msg_box.setStandardButtons(QtWidgets.QMessageBox.Save | QtWidgets.QMessageBox.Discard | QtWidgets.QMessageBox.Cancel) |
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| 137 | msg_box.setDefaultButton(QtWidgets.QMessageBox.Save) |
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| 138 | return msg_box.exec() |
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| 139 | |
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| 140 | def onCancel(self): |
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| 141 | """ |
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| 142 | Accept if document not modified, confirm intent otherwise. |
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| 143 | """ |
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| 144 | if self.is_modified: |
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| 145 | ret = self.onModifiedExit() |
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| 146 | if ret == QtWidgets.QMessageBox.Cancel: |
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| 147 | return |
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| 148 | elif ret == QtWidgets.QMessageBox.Save: |
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| 149 | self.updateFromEditor() |
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| 150 | self.reject() |
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| 151 | |
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| 152 | def onApply(self): |
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| 153 | """ |
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| 154 | Write the plugin and update the model editor if plugin editor open |
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| 155 | Write/overwrite the plugin if model editor open |
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| 156 | """ |
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| 157 | if isinstance(self.tabWidget.currentWidget(), PluginDefinition): |
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| 158 | self.updateFromPlugin() |
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| 159 | else: |
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| 160 | self.updateFromEditor() |
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| 161 | self.is_modified = False |
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| 162 | |
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| 163 | def editorModelModified(self): |
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| 164 | """ |
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| 165 | User modified the model in the Model Editor. |
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| 166 | Disable the plugin editor and show that the model is changed. |
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| 167 | """ |
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| 168 | self.setTabEdited(True) |
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| 169 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).setEnabled(True) |
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| 170 | self.is_modified = True |
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| 171 | |
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[3790f7f] | 172 | def pluginTitleSet(self): |
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[3b3b40b] | 173 | """ |
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[3790f7f] | 174 | User modified the model name. |
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| 175 | Display the model name in the window title |
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| 176 | and allow for model save. |
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[3b3b40b] | 177 | """ |
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| 178 | # Ensure plugin name is non-empty |
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| 179 | model = self.getModel() |
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| 180 | if 'filename' in model and model['filename']: |
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| 181 | self.setWindowTitle(self.window_title + " - " + model['filename']) |
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| 182 | self.setTabEdited(True) |
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| 183 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).setEnabled(True) |
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| 184 | self.is_modified = True |
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| 185 | else: |
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[3790f7f] | 186 | # the model name is empty - disable Apply and clear the editor |
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[3b3b40b] | 187 | self.buttonBox.button(QtWidgets.QDialogButtonBox.Apply).setEnabled(False) |
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[3790f7f] | 188 | self.editor_widget.blockSignals(True) |
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| 189 | self.editor_widget.txtEditor.setPlainText('') |
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| 190 | self.editor_widget.blockSignals(False) |
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| 191 | self.editor_widget.setEnabled(False) |
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[3b3b40b] | 192 | |
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| 193 | def setTabEdited(self, is_edited): |
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| 194 | """ |
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| 195 | Change the widget name to indicate unsaved state |
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| 196 | Unsaved state: add "*" to filename display |
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| 197 | saved state: remove "*" from filename display |
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| 198 | """ |
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| 199 | current_text = self.windowTitle() |
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| 200 | |
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| 201 | if is_edited: |
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| 202 | if current_text[-1] != "*": |
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| 203 | current_text += "*" |
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| 204 | else: |
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| 205 | if current_text[-1] == "*": |
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| 206 | current_text = current_text[:-1] |
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| 207 | self.setWindowTitle(current_text) |
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| 208 | |
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| 209 | def updateFromPlugin(self): |
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| 210 | """ |
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| 211 | Write the plugin and update the model editor |
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| 212 | """ |
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| 213 | # get current model |
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| 214 | model = self.getModel() |
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| 215 | if 'filename' not in model: return |
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| 216 | |
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| 217 | # get required filename |
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| 218 | filename = model['filename'] |
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| 219 | |
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| 220 | # check if file exists |
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| 221 | plugin_location = models.find_plugins_dir() |
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| 222 | full_path = os.path.join(plugin_location, filename) |
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| 223 | if os.path.splitext(full_path)[1] != ".py": |
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| 224 | full_path += ".py" |
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| 225 | |
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| 226 | # Update the global path definition |
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| 227 | self.filename = full_path |
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| 228 | |
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| 229 | if not self.canWriteModel(model, full_path): |
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| 230 | return |
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| 231 | |
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| 232 | # generate the model representation as string |
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| 233 | model_str = self.generateModel(model, full_path) |
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| 234 | self.writeFile(full_path, model_str) |
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[3790f7f] | 235 | |
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| 236 | # test the model |
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| 237 | |
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| 238 | # Run the model test in sasmodels |
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| 239 | try: |
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| 240 | _ = self.checkModel(full_path) |
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| 241 | except Exception as ex: |
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| 242 | msg = "Error building model: "+ str(ex) |
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| 243 | logging.error(msg) |
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| 244 | #print three last lines of the stack trace |
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| 245 | # this will point out the exact line failing |
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| 246 | last_lines = traceback.format_exc().split('\n')[-4:] |
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| 247 | traceback_to_show = '\n'.join(last_lines) |
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| 248 | logging.error(traceback_to_show) |
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| 249 | |
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| 250 | self.parent.communicate.statusBarUpdateSignal.emit("Model check failed") |
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| 251 | return |
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| 252 | |
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| 253 | self.editor_widget.setEnabled(True) |
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[3b3b40b] | 254 | |
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| 255 | # Update the editor here. |
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| 256 | # Simple string forced into control. |
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| 257 | self.editor_widget.blockSignals(True) |
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| 258 | self.editor_widget.txtEditor.setPlainText(model_str) |
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| 259 | self.editor_widget.blockSignals(False) |
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| 260 | |
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| 261 | # Set the widget title |
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| 262 | self.setTabEdited(False) |
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| 263 | |
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| 264 | # Notify listeners |
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| 265 | self.parent.communicate.customModelDirectoryChanged.emit() |
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| 266 | |
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[3790f7f] | 267 | # Notify the user |
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| 268 | msg = "Custom model "+filename + " successfully created." |
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| 269 | self.parent.communicate.statusBarUpdateSignal.emit(msg) |
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| 270 | logging.info(msg) |
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| 271 | |
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[3b3b40b] | 272 | def updateFromEditor(self): |
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| 273 | """ |
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| 274 | Save the current state of the Model Editor |
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| 275 | """ |
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| 276 | # make sure we have the file handly ready |
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| 277 | assert(self.filename != "") |
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| 278 | # Retrieve model string |
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| 279 | model_str = self.getModel()['text'] |
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| 280 | # Save the file |
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| 281 | self.writeFile(self.filename, model_str) |
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| 282 | # Update the tab title |
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| 283 | self.setTabEdited(False) |
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[3790f7f] | 284 | # notify the user |
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| 285 | msg = self.filename + " successfully saved." |
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| 286 | self.parent.communicate.statusBarUpdateSignal.emit(msg) |
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| 287 | logging.info(msg) |
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| 288 | |
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[3b3b40b] | 289 | def canWriteModel(self, model=None, full_path=""): |
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| 290 | """ |
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| 291 | Determine if the current plugin can be written to file |
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| 292 | """ |
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| 293 | assert(isinstance(model, dict)) |
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| 294 | assert(full_path!="") |
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| 295 | |
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| 296 | # Make sure we can overwrite the file if it exists |
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| 297 | if os.path.isfile(full_path): |
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| 298 | # can we overwrite it? |
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| 299 | if not model['overwrite']: |
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| 300 | # notify the viewer |
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| 301 | msg = "Plugin with specified name already exists.\n" |
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| 302 | msg += "Please specify different filename or allow file overwrite." |
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| 303 | QtWidgets.QMessageBox.critical(self, "Plugin Error", msg) |
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| 304 | # Don't accept but return |
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| 305 | return False |
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| 306 | # Update model editor if plugin definition changed |
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| 307 | func_str = model['text'] |
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| 308 | msg = None |
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| 309 | if func_str: |
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| 310 | if 'return' not in func_str: |
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| 311 | msg = "Error: The func(x) must 'return' a value at least.\n" |
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| 312 | msg += "For example: \n\nreturn 2*x" |
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| 313 | else: |
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| 314 | msg = 'Error: Function is not defined.' |
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| 315 | if msg is not None: |
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| 316 | QtWidgets.QMessageBox.critical(self, "Plugin Error", msg) |
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| 317 | return False |
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| 318 | return True |
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| 319 | |
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| 320 | def onHelp(self): |
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| 321 | """ |
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| 322 | Bring up the Model Editor Documentation whenever |
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| 323 | the HELP button is clicked. |
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| 324 | Calls Documentation Window with the path of the location within the |
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| 325 | documentation tree (after /doc/ ....". |
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| 326 | """ |
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| 327 | location = "/user/sasgui/perspectives/fitting/plugin.html" |
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| 328 | self.parent.showHelp(location) |
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| 329 | |
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| 330 | def getModel(self): |
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| 331 | """ |
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| 332 | Retrieves plugin model from the currently open tab |
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| 333 | """ |
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| 334 | return self.tabWidget.currentWidget().getModel() |
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| 335 | |
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[8b480d27] | 336 | @classmethod |
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| 337 | def writeFile(cls, fname, model_str=""): |
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[3b3b40b] | 338 | """ |
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| 339 | Write model content to file "fname" |
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| 340 | """ |
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| 341 | with open(fname, 'w') as out_f: |
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| 342 | out_f.write(model_str) |
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| 343 | |
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| 344 | def generateModel(self, model, fname): |
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| 345 | """ |
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| 346 | generate model from the current plugin state |
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| 347 | """ |
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| 348 | name = model['filename'] |
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| 349 | desc_str = model['description'] |
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| 350 | param_str = self.strFromParamDict(model['parameters']) |
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| 351 | pd_param_str = self.strFromParamDict(model['pd_parameters']) |
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| 352 | func_str = model['text'] |
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| 353 | model_text = CUSTOM_TEMPLATE % { |
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| 354 | 'name': name, |
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| 355 | 'title': 'User model for ' + name, |
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| 356 | 'description': desc_str, |
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| 357 | 'date': datetime.datetime.now().strftime('%YYYY-%mm-%dd'), |
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| 358 | } |
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| 359 | |
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| 360 | # Write out parameters |
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| 361 | param_names = [] # to store parameter names |
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| 362 | pd_params = [] |
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| 363 | model_text += 'parameters = [ \n' |
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| 364 | model_text += '# ["name", "units", default, [lower, upper], "type", "description"],\n' |
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[8b480d27] | 365 | if param_str: |
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| 366 | for pname, pvalue, desc in self.getParamHelper(param_str): |
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| 367 | param_names.append(pname) |
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| 368 | model_text += " ['%s', '', %s, [-inf, inf], '', '%s'],\n" % (pname, pvalue, desc) |
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| 369 | if pd_param_str: |
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| 370 | for pname, pvalue, desc in self.getParamHelper(pd_param_str): |
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| 371 | param_names.append(pname) |
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| 372 | pd_params.append(pname) |
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| 373 | model_text += " ['%s', '', %s, [-inf, inf], 'volume', '%s'],\n" % (pname, pvalue, desc) |
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[3b3b40b] | 374 | model_text += ' ]\n' |
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| 375 | |
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| 376 | # Write out function definition |
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| 377 | model_text += 'def Iq(%s):\n' % ', '.join(['x'] + param_names) |
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| 378 | model_text += ' """Absolute scattering"""\n' |
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| 379 | if "scipy." in func_str: |
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| 380 | model_text +=" import scipy\n" |
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| 381 | if "numpy." in func_str: |
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| 382 | model_text +=" import numpy\n" |
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| 383 | if "np." in func_str: |
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| 384 | model_text +=" import numpy as np\n" |
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| 385 | for func_line in func_str.split('\n'): |
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| 386 | model_text +='%s%s\n' % (" ", func_line) |
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| 387 | model_text +='## uncomment the following if Iq works for vector x\n' |
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| 388 | model_text +='#Iq.vectorized = True\n' |
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| 389 | |
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| 390 | # If polydisperse, create place holders for form_volume, ER and VR |
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| 391 | if pd_params: |
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| 392 | model_text +="\n" |
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| 393 | model_text +=CUSTOM_TEMPLATE_PD % {'args': ', '.join(pd_params)} |
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| 394 | |
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| 395 | # Create place holder for Iqxy |
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| 396 | model_text +="\n" |
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| 397 | model_text +='#def Iqxy(%s):\n' % ', '.join(["x", "y"] + param_names) |
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| 398 | model_text +='# """Absolute scattering of oriented particles."""\n' |
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| 399 | model_text +='# ...\n' |
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| 400 | model_text +='# return oriented_form(x, y, args)\n' |
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| 401 | model_text +='## uncomment the following if Iqxy works for vector x, y\n' |
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| 402 | model_text +='#Iqxy.vectorized = True\n' |
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| 403 | |
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| 404 | return model_text |
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| 405 | |
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[8b480d27] | 406 | @classmethod |
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| 407 | def checkModel(cls, path): |
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[3b3b40b] | 408 | """ |
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| 409 | Check that the model save in file 'path' can run. |
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| 410 | """ |
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| 411 | # try running the model |
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| 412 | from sasmodels.sasview_model import load_custom_model |
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| 413 | Model = load_custom_model(path) |
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| 414 | model = Model() |
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| 415 | q = np.array([0.01, 0.1]) |
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[8b480d27] | 416 | _ = model.evalDistribution(q) |
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[3b3b40b] | 417 | qx, qy = np.array([0.01, 0.01]), np.array([0.1, 0.1]) |
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[8b480d27] | 418 | _ = model.evalDistribution([qx, qy]) |
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[3b3b40b] | 419 | |
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| 420 | # check the model's unit tests run |
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| 421 | from sasmodels.model_test import run_one |
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[3790f7f] | 422 | # TestSuite module in Qt5 now deletes tests in the suite after running, |
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| 423 | # so suite[0] in run_one() in sasmodels/model_test.py will contain [None] and |
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| 424 | # test.info.tests will raise. |
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| 425 | # Not sure how to change the behaviour here, most likely sasmodels will have to |
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| 426 | # be modified |
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[3b3b40b] | 427 | result = run_one(path) |
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| 428 | |
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| 429 | return result |
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| 430 | |
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[8b480d27] | 431 | @classmethod |
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| 432 | def getParamHelper(cls, param_str): |
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[3b3b40b] | 433 | """ |
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| 434 | yield a sequence of name, value pairs for the parameters in param_str |
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| 435 | |
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| 436 | Parameters can be defined by one per line by name=value, or multiple |
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| 437 | on the same line by separating the pairs by semicolon or comma. The |
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| 438 | value is optional and defaults to "1.0". |
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| 439 | """ |
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| 440 | for line in param_str.replace(';', ',').split('\n'): |
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| 441 | for item in line.split(','): |
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| 442 | defn, desc = item.split('#', 1) if '#' in item else (item, '') |
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| 443 | name, value = defn.split('=', 1) if '=' in defn else (defn, '1.0') |
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| 444 | if name: |
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| 445 | yield [v.strip() for v in (name, value, desc)] |
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[8b480d27] | 446 | |
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| 447 | @classmethod |
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| 448 | def strFromParamDict(cls, param_dict): |
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[3b3b40b] | 449 | """ |
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| 450 | Creates string from parameter dictionary |
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| 451 | {0: ('variable','value'), |
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| 452 | 1: ('variable','value'), |
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| 453 | ...} |
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| 454 | """ |
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| 455 | param_str = "" |
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[8b480d27] | 456 | for _, params in param_dict.items(): |
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[3b3b40b] | 457 | if not params[0]: continue |
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| 458 | value = 1 |
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| 459 | if params[1]: |
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| 460 | try: |
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| 461 | value = float(params[1]) |
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| 462 | except ValueError: |
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| 463 | # convert to default |
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| 464 | value = 1 |
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| 465 | param_str += params[0] + " = " + str(value) + "\n" |
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| 466 | return param_str |
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| 467 | |
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| 468 | |
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| 469 | CUSTOM_TEMPLATE = '''\ |
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| 470 | r""" |
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| 471 | Definition |
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| 472 | ---------- |
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| 473 | |
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| 474 | Calculates %(name)s. |
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| 475 | |
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| 476 | %(description)s |
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| 477 | |
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| 478 | References |
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| 479 | ---------- |
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| 480 | |
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| 481 | Authorship and Verification |
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| 482 | --------------------------- |
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| 483 | |
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| 484 | * **Author:** --- **Date:** %(date)s |
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| 485 | * **Last Modified by:** --- **Date:** %(date)s |
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| 486 | * **Last Reviewed by:** --- **Date:** %(date)s |
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| 487 | """ |
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| 488 | |
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| 489 | from math import * |
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| 490 | from numpy import inf |
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| 491 | |
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| 492 | name = "%(name)s" |
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| 493 | title = "%(title)s" |
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| 494 | description = """%(description)s""" |
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| 495 | |
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| 496 | ''' |
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| 497 | |
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| 498 | CUSTOM_TEMPLATE_PD = '''\ |
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| 499 | def form_volume(%(args)s): |
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| 500 | """ |
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| 501 | Volume of the particles used to compute absolute scattering intensity |
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| 502 | and to weight polydisperse parameter contributions. |
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| 503 | """ |
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| 504 | return 0.0 |
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| 505 | |
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| 506 | def ER(%(args)s): |
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| 507 | """ |
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| 508 | Effective radius of particles to be used when computing structure factors. |
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| 509 | |
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| 510 | Input parameters are vectors ranging over the mesh of polydispersity values. |
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| 511 | """ |
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| 512 | return 0.0 |
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| 513 | |
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| 514 | def VR(%(args)s): |
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| 515 | """ |
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| 516 | Volume ratio of particles to be used when computing structure factors. |
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| 517 | |
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| 518 | Input parameters are vectors ranging over the mesh of polydispersity values. |
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| 519 | """ |
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| 520 | return 1.0 |
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| 521 | ''' |
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| 522 | |
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| 523 | SUM_TEMPLATE = """ |
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| 524 | from sasmodels.core import load_model_info |
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| 525 | from sasmodels.sasview_model import make_model_from_info |
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| 526 | |
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| 527 | model_info = load_model_info('{model1}{operator}{model2}') |
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| 528 | model_info.name = '{name}'{desc_line} |
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| 529 | Model = make_model_from_info(model_info) |
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| 530 | """ |
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| 531 | |
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| 532 | if __name__ == '__main__': |
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| 533 | app = QtWidgets.QApplication(sys.argv) |
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| 534 | sheet = TabbedModelEditor() |
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| 535 | sheet.show() |
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[8b480d27] | 536 | app.exec_() |
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[3b3b40b] | 537 | |
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