1 | # -*- coding: utf-8 -*- |
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2 | """ |
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3 | Global defaults and various utility functions usable by the general GUI |
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4 | """ |
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5 | |
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6 | import os |
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7 | import re |
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8 | import sys |
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9 | import imp |
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10 | import warnings |
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11 | import webbrowser |
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12 | import urllib.parse |
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13 | |
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14 | import numpy as np |
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15 | |
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16 | warnings.simplefilter("ignore") |
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17 | import logging |
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18 | |
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19 | from PyQt5 import QtCore |
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20 | from PyQt5 import QtGui |
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21 | from PyQt5 import QtWidgets |
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22 | |
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23 | from periodictable import formula as Formula |
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24 | from sas.qtgui.Plotting import DataTransform |
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25 | from sas.qtgui.Plotting.ConvertUnits import convertUnit |
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26 | from sas.qtgui.Plotting.PlotterData import Data1D |
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27 | from sas.qtgui.Plotting.PlotterData import Data2D |
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28 | from sas.sascalc.dataloader.loader import Loader |
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29 | from sas.qtgui.Utilities import CustomDir |
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30 | |
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31 | ## TODO: CHANGE FOR SHIPPED PATH IN RELEASE |
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32 | if os.path.splitext(sys.argv[0])[1].lower() != ".py": |
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33 | HELP_DIRECTORY_LOCATION = "doc" |
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34 | else: |
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35 | HELP_DIRECTORY_LOCATION = "docs/sphinx-docs/build/html" |
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36 | IMAGES_DIRECTORY_LOCATION = HELP_DIRECTORY_LOCATION + "/_images" |
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37 | |
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38 | def get_app_dir(): |
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39 | """ |
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40 | The application directory is the one where the default custom_config.py |
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41 | file resides. |
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42 | |
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43 | :returns: app_path - the path to the applicatin directory |
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44 | """ |
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45 | # First, try the directory of the executable we are running |
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46 | app_path = sys.path[0] |
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47 | if os.path.isfile(app_path): |
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48 | app_path = os.path.dirname(app_path) |
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49 | if os.path.isfile(os.path.join(app_path, "custom_config.py")): |
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50 | app_path = os.path.abspath(app_path) |
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51 | #logging.info("Using application path: %s", app_path) |
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52 | return app_path |
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53 | |
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54 | # Next, try the current working directory |
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55 | if os.path.isfile(os.path.join(os.getcwd(), "custom_config.py")): |
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56 | #logging.info("Using application path: %s", os.getcwd()) |
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57 | return os.path.abspath(os.getcwd()) |
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58 | |
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59 | # Finally, try the directory of the sasview module |
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60 | # TODO: gui_manager will have to know about sasview until we |
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61 | # clean all these module variables and put them into a config class |
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62 | # that can be passed by sasview.py. |
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63 | # logging.info(sys.executable) |
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64 | # logging.info(str(sys.argv)) |
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65 | from sas import sasview as sasview |
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66 | app_path = os.path.dirname(sasview.__file__) |
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67 | # logging.info("Using application path: %s", app_path) |
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68 | return app_path |
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69 | |
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70 | def get_user_directory(): |
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71 | """ |
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72 | Returns the user's home directory |
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73 | """ |
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74 | userdir = os.path.join(os.path.expanduser("~"), ".sasview") |
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75 | if not os.path.isdir(userdir): |
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76 | os.makedirs(userdir) |
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77 | return userdir |
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78 | |
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79 | def _find_local_config(confg_file, path): |
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80 | """ |
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81 | Find configuration file for the current application |
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82 | """ |
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83 | config_module = None |
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84 | fObj = None |
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85 | try: |
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86 | fObj, path_config, descr = imp.find_module(confg_file, [path]) |
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87 | config_module = imp.load_module(confg_file, fObj, path_config, descr) |
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88 | except ImportError: |
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89 | pass |
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90 | #logging.error("Error loading %s/%s: %s" % (path, confg_file, sys.exc_value)) |
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91 | except ValueError: |
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92 | print("Value error") |
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93 | pass |
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94 | finally: |
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95 | if fObj is not None: |
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96 | fObj.close() |
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97 | #logging.info("GuiManager loaded %s/%s" % (path, confg_file)) |
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98 | return config_module |
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99 | |
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100 | |
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101 | # Get APP folder |
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102 | PATH_APP = get_app_dir() |
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103 | DATAPATH = PATH_APP |
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104 | |
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105 | # Read in the local config, which can either be with the main |
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106 | # application or in the installation directory |
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107 | config = _find_local_config('local_config', PATH_APP) |
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108 | |
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109 | if config is None: |
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110 | config = _find_local_config('local_config', os.getcwd()) |
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111 | else: |
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112 | pass |
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113 | |
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114 | c_conf_dir = CustomDir.setup_conf_dir(PATH_APP) |
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115 | |
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116 | custom_config = _find_local_config('custom_config', c_conf_dir) |
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117 | if custom_config is None: |
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118 | custom_config = _find_local_config('custom_config', os.getcwd()) |
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119 | if custom_config is None: |
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120 | msgConfig = "Custom_config file was not imported" |
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121 | |
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122 | #read some constants from config |
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123 | APPLICATION_STATE_EXTENSION = config.APPLICATION_STATE_EXTENSION |
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124 | APPLICATION_NAME = config.__appname__ |
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125 | SPLASH_SCREEN_PATH = config.SPLASH_SCREEN_PATH |
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126 | WELCOME_PANEL_ON = config.WELCOME_PANEL_ON |
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127 | SPLASH_SCREEN_WIDTH = config.SPLASH_SCREEN_WIDTH |
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128 | SPLASH_SCREEN_HEIGHT = config.SPLASH_SCREEN_HEIGHT |
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129 | SS_MAX_DISPLAY_TIME = config.SS_MAX_DISPLAY_TIME |
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130 | if not WELCOME_PANEL_ON: |
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131 | WELCOME_PANEL_SHOW = False |
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132 | else: |
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133 | WELCOME_PANEL_SHOW = True |
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134 | try: |
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135 | DATALOADER_SHOW = custom_config.DATALOADER_SHOW |
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136 | TOOLBAR_SHOW = custom_config.TOOLBAR_SHOW |
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137 | FIXED_PANEL = custom_config.FIXED_PANEL |
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138 | if WELCOME_PANEL_ON: |
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139 | WELCOME_PANEL_SHOW = custom_config.WELCOME_PANEL_SHOW |
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140 | PLOPANEL_WIDTH = custom_config.PLOPANEL_WIDTH |
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141 | DATAPANEL_WIDTH = custom_config.DATAPANEL_WIDTH |
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142 | GUIFRAME_WIDTH = custom_config.GUIFRAME_WIDTH |
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143 | GUIFRAME_HEIGHT = custom_config.GUIFRAME_HEIGHT |
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144 | CONTROL_WIDTH = custom_config.CONTROL_WIDTH |
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145 | CONTROL_HEIGHT = custom_config.CONTROL_HEIGHT |
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146 | DEFAULT_PERSPECTIVE = custom_config.DEFAULT_PERSPECTIVE |
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147 | CLEANUP_PLOT = custom_config.CLEANUP_PLOT |
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148 | # custom open_path |
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149 | open_folder = custom_config.DEFAULT_OPEN_FOLDER |
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150 | if open_folder is not None and os.path.isdir(open_folder): |
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151 | DEFAULT_OPEN_FOLDER = os.path.abspath(open_folder) |
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152 | else: |
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153 | DEFAULT_OPEN_FOLDER = PATH_APP |
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154 | except AttributeError: |
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155 | DATALOADER_SHOW = True |
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156 | TOOLBAR_SHOW = True |
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157 | FIXED_PANEL = True |
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158 | WELCOME_PANEL_SHOW = False |
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159 | PLOPANEL_WIDTH = config.PLOPANEL_WIDTH |
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160 | DATAPANEL_WIDTH = config.DATAPANEL_WIDTH |
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161 | GUIFRAME_WIDTH = config.GUIFRAME_WIDTH |
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162 | GUIFRAME_HEIGHT = config.GUIFRAME_HEIGHT |
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163 | CONTROL_WIDTH = -1 |
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164 | CONTROL_HEIGHT = -1 |
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165 | DEFAULT_PERSPECTIVE = None |
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166 | CLEANUP_PLOT = False |
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167 | DEFAULT_OPEN_FOLDER = PATH_APP |
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168 | |
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169 | #DEFAULT_STYLE = config.DEFAULT_STYLE |
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170 | |
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171 | PLUGIN_STATE_EXTENSIONS = config.PLUGIN_STATE_EXTENSIONS |
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172 | OPEN_SAVE_MENU = config.OPEN_SAVE_PROJECT_MENU |
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173 | VIEW_MENU = config.VIEW_MENU |
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174 | EDIT_MENU = config.EDIT_MENU |
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175 | extension_list = [] |
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176 | if APPLICATION_STATE_EXTENSION is not None: |
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177 | extension_list.append(APPLICATION_STATE_EXTENSION) |
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178 | EXTENSIONS = PLUGIN_STATE_EXTENSIONS + extension_list |
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179 | try: |
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180 | PLUGINS_WLIST = '|'.join(config.PLUGINS_WLIST) |
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181 | except AttributeError: |
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182 | PLUGINS_WLIST = '' |
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183 | APPLICATION_WLIST = config.APPLICATION_WLIST |
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184 | IS_WIN = True |
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185 | IS_LINUX = False |
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186 | CLOSE_SHOW = True |
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187 | TIME_FACTOR = 2 |
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188 | NOT_SO_GRAPH_LIST = ["BoxSum"] |
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189 | |
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190 | |
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191 | class Communicate(QtCore.QObject): |
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192 | """ |
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193 | Utility class for tracking of the Qt signals |
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194 | """ |
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195 | # File got successfully read |
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196 | fileReadSignal = QtCore.pyqtSignal(list) |
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197 | |
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198 | # Open File returns "list" of paths |
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199 | fileDataReceivedSignal = QtCore.pyqtSignal(dict) |
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200 | |
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201 | # Update Main window status bar with "str" |
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202 | # Old "StatusEvent" |
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203 | statusBarUpdateSignal = QtCore.pyqtSignal(str) |
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204 | |
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205 | # Send data to the current perspective |
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206 | updatePerspectiveWithDataSignal = QtCore.pyqtSignal(list) |
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207 | |
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208 | # New data in current perspective |
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209 | updateModelFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem) |
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210 | |
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211 | # New theory data in current perspective |
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212 | updateTheoryFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem) |
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213 | |
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214 | # New plot requested from the GUI manager |
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215 | # Old "NewPlotEvent" |
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216 | plotRequestedSignal = QtCore.pyqtSignal(list) |
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217 | |
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218 | # Plot from file names |
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219 | plotFromFilenameSignal = QtCore.pyqtSignal(str) |
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220 | |
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221 | # Plot update requested from a perspective |
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222 | plotUpdateSignal = QtCore.pyqtSignal(list) |
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223 | |
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224 | # Progress bar update value |
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225 | progressBarUpdateSignal = QtCore.pyqtSignal(int) |
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226 | |
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227 | # Workspace charts added/removed |
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228 | activeGraphsSignal = QtCore.pyqtSignal(list) |
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229 | |
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230 | # Current workspace chart's name changed |
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231 | activeGraphName = QtCore.pyqtSignal(tuple) |
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232 | |
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233 | # Current perspective changed |
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234 | perspectiveChangedSignal = QtCore.pyqtSignal(str) |
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235 | |
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236 | # File/dataset got deleted |
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237 | dataDeletedSignal = QtCore.pyqtSignal(list) |
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238 | |
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239 | # Send data to Data Operation Utility panel |
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240 | sendDataToPanelSignal = QtCore.pyqtSignal(dict) |
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241 | |
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242 | # Send result of Data Operation Utility panel to Data Explorer |
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243 | updateModelFromDataOperationPanelSignal = QtCore.pyqtSignal(QtGui.QStandardItem, dict) |
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244 | |
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245 | # Notify about a new custom plugin being written/deleted/modified |
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246 | customModelDirectoryChanged = QtCore.pyqtSignal() |
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247 | |
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248 | # Notify the gui manager about new data to be added to the grid view |
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249 | sendDataToGridSignal = QtCore.pyqtSignal(list) |
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250 | |
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251 | # Action Save Analysis triggered |
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252 | saveAnalysisSignal = QtCore.pyqtSignal() |
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253 | |
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254 | # Mask Editor requested |
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255 | maskEditorSignal = QtCore.pyqtSignal(Data2D) |
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256 | |
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257 | def updateModelItemWithPlot(item, update_data, name=""): |
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258 | """ |
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259 | Adds a checkboxed row named "name" to QStandardItem |
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260 | Adds 'update_data' to that row. |
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261 | """ |
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262 | assert isinstance(item, QtGui.QStandardItem) |
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263 | |
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264 | # Check if data with the same ID is already present |
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265 | for index in range(item.rowCount()): |
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266 | plot_item = item.child(index) |
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267 | if plot_item.isCheckable(): |
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268 | plot_data = plot_item.child(0).data() |
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269 | if plot_data.id is not None and \ |
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270 | (plot_data.name == update_data.name or plot_data.id == update_data.id): |
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271 | # if plot_data.id is not None and plot_data.id == update_data.id: |
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272 | # replace data section in item |
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273 | plot_item.child(0).setData(update_data) |
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274 | plot_item.setText(name) |
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275 | # Plot title if any |
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276 | if plot_item.child(1).hasChildren(): |
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277 | plot_item.child(1).child(0).setText("Title: %s"%name) |
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278 | # Force redisplay |
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279 | return |
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280 | |
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281 | # Create the new item |
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282 | checkbox_item = createModelItemWithPlot(update_data, name) |
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283 | |
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284 | # Append the new row to the main item |
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285 | item.appendRow(checkbox_item) |
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286 | |
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287 | class HashableStandardItem(QtGui.QStandardItem): |
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288 | """ |
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289 | Subclassed standard item with reimplemented __hash__ |
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290 | to allow for use as an index. |
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291 | """ |
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292 | def __init__(self, parent=None): |
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293 | super(HashableStandardItem, self).__init__() |
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294 | |
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295 | def __hash__(self): |
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296 | ''' just a random hash value ''' |
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297 | #return hash(self.__init__) |
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298 | return 0 |
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299 | |
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300 | def clone(self): |
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301 | ''' Assure __hash__ is cloned as well''' |
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302 | clone = super(HashableStandardItem, self).clone() |
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303 | clone.__hash__ = self.__hash__ |
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304 | return clone |
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305 | |
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306 | |
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307 | def createModelItemWithPlot(update_data, name=""): |
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308 | """ |
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309 | Creates a checkboxed QStandardItem named "name" |
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310 | Adds 'update_data' to that row. |
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311 | """ |
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312 | py_update_data = update_data |
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313 | |
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314 | checkbox_item = HashableStandardItem() |
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315 | checkbox_item.setCheckable(True) |
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316 | checkbox_item.setCheckState(QtCore.Qt.Checked) |
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317 | checkbox_item.setText(name) |
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318 | |
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319 | # Add "Info" item |
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320 | if isinstance(py_update_data, (Data1D, Data2D)): |
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321 | # If Data1/2D added - extract Info from it |
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322 | info_item = infoFromData(py_update_data) |
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323 | else: |
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324 | # otherwise just add a naked item |
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325 | info_item = QtGui.QStandardItem("Info") |
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326 | |
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327 | # Add the actual Data1D/Data2D object |
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328 | object_item = QtGui.QStandardItem() |
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329 | object_item.setData(update_data) |
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330 | |
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331 | # Set the data object as the first child |
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332 | checkbox_item.setChild(0, object_item) |
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333 | |
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334 | # Set info_item as the second child |
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335 | checkbox_item.setChild(1, info_item) |
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336 | |
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337 | # And return the newly created item |
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338 | return checkbox_item |
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339 | |
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340 | def updateModelItem(item, update_data, name=""): |
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341 | """ |
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342 | Adds a simple named child to QStandardItem |
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343 | """ |
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344 | assert isinstance(item, QtGui.QStandardItem) |
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345 | |
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346 | # Add the actual Data1D/Data2D object |
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347 | object_item = QtGui.QStandardItem() |
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348 | object_item.setText(name) |
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349 | object_item.setData(update_data) |
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350 | |
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351 | # Append the new row to the main item |
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352 | item.appendRow(object_item) |
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353 | |
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354 | def updateModelItemStatus(model_item, filename="", name="", status=2): |
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355 | """ |
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356 | Update status of checkbox related to high- and low-Q extrapolation |
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357 | choice in Invariant Panel |
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358 | """ |
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359 | assert isinstance(model_item, QtGui.QStandardItemModel) |
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360 | |
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361 | # Iterate over model looking for items with checkboxes |
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362 | for index in range(model_item.rowCount()): |
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363 | item = model_item.item(index) |
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364 | if item.text() == filename and item.isCheckable() \ |
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365 | and item.checkState() == QtCore.Qt.Checked: |
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366 | # Going 1 level deeper only |
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367 | for index_2 in range(item.rowCount()): |
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368 | item_2 = item.child(index_2) |
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369 | if item_2 and item_2.isCheckable() and item_2.text() == name: |
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370 | item_2.setCheckState(status) |
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371 | |
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372 | return |
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373 | |
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374 | def itemFromFilename(filename, model_item): |
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375 | """ |
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376 | Returns the model item text=filename in the model |
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377 | """ |
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378 | assert isinstance(model_item, QtGui.QStandardItemModel) |
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379 | assert isinstance(filename, str) |
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380 | |
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381 | # Iterate over model looking for named items |
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382 | item = list([i for i in [model_item.item(index) |
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383 | for index in range(model_item.rowCount())] |
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384 | if str(i.text()) == filename]) |
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385 | return item[0] if len(item)>0 else None |
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386 | |
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387 | def plotsFromModel(model_name, model_item): |
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388 | """ |
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389 | Returns the list of plots for the item with model name in the model |
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390 | """ |
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391 | assert isinstance(model_item, QtGui.QStandardItem) |
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392 | assert isinstance(model_name, str) |
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393 | |
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394 | plot_data = [] |
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395 | # Iterate over model looking for named items |
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396 | for index in range(model_item.rowCount()): |
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397 | item = model_item.child(index) |
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398 | if isinstance(item.data(), (Data1D, Data2D)): |
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399 | plot_data.append(item.data()) |
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400 | if model_name in str(item.text()): |
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401 | #plot_data.append(item.child(0).data()) |
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402 | # Going 1 level deeper only |
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403 | for index_2 in range(item.rowCount()): |
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404 | item_2 = item.child(index_2) |
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405 | if item_2 and isinstance(item_2.data(), (Data1D, Data2D)): |
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406 | plot_data.append(item_2.data()) |
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407 | |
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408 | return plot_data |
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409 | |
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410 | def plotsFromFilename(filename, model_item): |
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411 | """ |
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412 | Returns the list of plots for the item with text=filename in the model |
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413 | """ |
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414 | assert isinstance(model_item, QtGui.QStandardItemModel) |
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415 | assert isinstance(filename, str) |
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416 | |
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417 | plot_data = [] |
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418 | # Iterate over model looking for named items |
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419 | for index in range(model_item.rowCount()): |
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420 | item = model_item.item(index) |
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421 | if str(item.text()) == filename: |
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422 | # TODO: assure item type is correct (either data1/2D or Plotter) |
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423 | plot_data.append(item.child(0).data()) |
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424 | # Going 1 level deeper only |
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425 | for index_2 in range(item.rowCount()): |
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426 | item_2 = item.child(index_2) |
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427 | if item_2 and item_2.isCheckable(): |
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428 | # TODO: assure item type is correct (either data1/2D or Plotter) |
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429 | plot_data.append(item_2.child(0).data()) |
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430 | |
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431 | return plot_data |
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432 | |
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433 | def plotsFromCheckedItems(model_item): |
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434 | """ |
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435 | Returns the list of plots for items in the model which are checked |
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436 | """ |
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437 | assert isinstance(model_item, QtGui.QStandardItemModel) |
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438 | |
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439 | plot_data = [] |
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440 | # Iterate over model looking for items with checkboxes |
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441 | for index in range(model_item.rowCount()): |
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442 | item = model_item.item(index) |
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443 | |
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444 | # Going 1 level deeper only |
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445 | for index_2 in range(item.rowCount()): |
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446 | item_2 = item.child(index_2) |
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447 | if item_2 and item_2.isCheckable() and item_2.checkState() == QtCore.Qt.Checked: |
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448 | # TODO: assure item type is correct (either data1/2D or Plotter) |
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449 | plot_data.append((item_2, item_2.child(0).data())) |
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450 | |
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451 | if item.isCheckable() and item.checkState() == QtCore.Qt.Checked: |
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452 | # TODO: assure item type is correct (either data1/2D or Plotter) |
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453 | plot_data.append((item, item.child(0).data())) |
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454 | |
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455 | return plot_data |
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456 | |
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457 | def infoFromData(data): |
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458 | """ |
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459 | Given Data1D/Data2D object, extract relevant Info elements |
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460 | and add them to a model item |
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461 | """ |
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462 | assert isinstance(data, (Data1D, Data2D)) |
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463 | |
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464 | info_item = QtGui.QStandardItem("Info") |
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465 | |
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466 | title_item = QtGui.QStandardItem("Title: " + data.title) |
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467 | info_item.appendRow(title_item) |
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468 | run_item = QtGui.QStandardItem("Run: " + str(data.run)) |
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469 | info_item.appendRow(run_item) |
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470 | type_item = QtGui.QStandardItem("Type: " + str(data.__class__.__name__)) |
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471 | info_item.appendRow(type_item) |
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472 | |
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473 | if data.path: |
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474 | path_item = QtGui.QStandardItem("Path: " + data.path) |
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475 | info_item.appendRow(path_item) |
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476 | |
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477 | if data.instrument: |
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478 | instr_item = QtGui.QStandardItem("Instrument: " + data.instrument) |
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479 | info_item.appendRow(instr_item) |
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480 | |
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481 | process_item = QtGui.QStandardItem("Process") |
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482 | if isinstance(data.process, list) and data.process: |
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483 | for process in data.process: |
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484 | process_date = process.date |
---|
485 | process_date_item = QtGui.QStandardItem("Date: " + process_date) |
---|
486 | process_item.appendRow(process_date_item) |
---|
487 | |
---|
488 | process_descr = process.description |
---|
489 | process_descr_item = QtGui.QStandardItem("Description: " + process_descr) |
---|
490 | process_item.appendRow(process_descr_item) |
---|
491 | |
---|
492 | process_name = process.name |
---|
493 | process_name_item = QtGui.QStandardItem("Name: " + process_name) |
---|
494 | process_item.appendRow(process_name_item) |
---|
495 | |
---|
496 | info_item.appendRow(process_item) |
---|
497 | |
---|
498 | return info_item |
---|
499 | |
---|
500 | def dataFromItem(item): |
---|
501 | """ |
---|
502 | Retrieve Data1D/2D component from QStandardItem. |
---|
503 | The assumption - data stored in SasView standard, in child 0 |
---|
504 | """ |
---|
505 | return item.child(0).data() |
---|
506 | |
---|
507 | def openLink(url): |
---|
508 | """ |
---|
509 | Open a URL in an external browser. |
---|
510 | Check the URL first, though. |
---|
511 | """ |
---|
512 | parsed_url = urllib.parse.urlparse(url) |
---|
513 | if parsed_url.scheme: |
---|
514 | webbrowser.open(url) |
---|
515 | else: |
---|
516 | msg = "Attempt at opening an invalid URL" |
---|
517 | raise AttributeError(msg) |
---|
518 | |
---|
519 | def retrieveData1d(data): |
---|
520 | """ |
---|
521 | Retrieve 1D data from file and construct its text |
---|
522 | representation |
---|
523 | """ |
---|
524 | if not isinstance(data, Data1D): |
---|
525 | msg = "Incorrect type passed to retrieveData1d" |
---|
526 | raise AttributeError(msg) |
---|
527 | try: |
---|
528 | xmin = min(data.x) |
---|
529 | ymin = min(data.y) |
---|
530 | except: |
---|
531 | msg = "Unable to find min/max of \n data named %s" % \ |
---|
532 | data.filename |
---|
533 | #logging.error(msg) |
---|
534 | raise ValueError(msg) |
---|
535 | |
---|
536 | text = data.__str__() |
---|
537 | text += 'Data Min Max:\n' |
---|
538 | text += 'X_min = %s: X_max = %s\n' % (xmin, max(data.x)) |
---|
539 | text += 'Y_min = %s: Y_max = %s\n' % (ymin, max(data.y)) |
---|
540 | if data.dy is not None: |
---|
541 | text += 'dY_min = %s: dY_max = %s\n' % (min(data.dy), max(data.dy)) |
---|
542 | text += '\nData Points:\n' |
---|
543 | x_st = "X" |
---|
544 | for index in range(len(data.x)): |
---|
545 | if data.dy is not None and len(data.dy) > index: |
---|
546 | dy_val = data.dy[index] |
---|
547 | else: |
---|
548 | dy_val = 0.0 |
---|
549 | if data.dx is not None and len(data.dx) > index: |
---|
550 | dx_val = data.dx[index] |
---|
551 | else: |
---|
552 | dx_val = 0.0 |
---|
553 | if data.dxl is not None and len(data.dxl) > index: |
---|
554 | if index == 0: |
---|
555 | x_st = "Xl" |
---|
556 | dx_val = data.dxl[index] |
---|
557 | elif data.dxw is not None and len(data.dxw) > index: |
---|
558 | if index == 0: |
---|
559 | x_st = "Xw" |
---|
560 | dx_val = data.dxw[index] |
---|
561 | |
---|
562 | if index == 0: |
---|
563 | text += "<index> \t<X> \t<Y> \t<dY> \t<d%s>\n" % x_st |
---|
564 | text += "%s \t%s \t%s \t%s \t%s\n" % (index, |
---|
565 | data.x[index], |
---|
566 | data.y[index], |
---|
567 | dy_val, |
---|
568 | dx_val) |
---|
569 | return text |
---|
570 | |
---|
571 | def retrieveData2d(data): |
---|
572 | """ |
---|
573 | Retrieve 2D data from file and construct its text |
---|
574 | representation |
---|
575 | """ |
---|
576 | if not isinstance(data, Data2D): |
---|
577 | msg = "Incorrect type passed to retrieveData2d" |
---|
578 | raise AttributeError(msg) |
---|
579 | |
---|
580 | text = data.__str__() |
---|
581 | text += 'Data Min Max:\n' |
---|
582 | text += 'I_min = %s\n' % min(data.data) |
---|
583 | text += 'I_max = %s\n\n' % max(data.data) |
---|
584 | text += 'Data (First 2501) Points:\n' |
---|
585 | text += 'Data columns include err(I).\n' |
---|
586 | text += 'ASCII data starts here.\n' |
---|
587 | text += "<index> \t<Qx> \t<Qy> \t<I> \t<dI> \t<dQparal> \t<dQperp>\n" |
---|
588 | di_val = 0.0 |
---|
589 | dx_val = 0.0 |
---|
590 | dy_val = 0.0 |
---|
591 | len_data = len(data.qx_data) |
---|
592 | for index in range(0, len_data): |
---|
593 | x_val = data.qx_data[index] |
---|
594 | y_val = data.qy_data[index] |
---|
595 | i_val = data.data[index] |
---|
596 | if data.err_data is not None: |
---|
597 | di_val = data.err_data[index] |
---|
598 | if data.dqx_data is not None: |
---|
599 | dx_val = data.dqx_data[index] |
---|
600 | if data.dqy_data is not None: |
---|
601 | dy_val = data.dqy_data[index] |
---|
602 | |
---|
603 | text += "%s \t%s \t%s \t%s \t%s \t%s \t%s\n" % (index, |
---|
604 | x_val, |
---|
605 | y_val, |
---|
606 | i_val, |
---|
607 | di_val, |
---|
608 | dx_val, |
---|
609 | dy_val) |
---|
610 | # Takes too long time for typical data2d: Break here |
---|
611 | if index >= 2500: |
---|
612 | text += ".............\n" |
---|
613 | break |
---|
614 | |
---|
615 | return text |
---|
616 | |
---|
617 | def onTXTSave(data, path): |
---|
618 | """ |
---|
619 | Save file as formatted txt |
---|
620 | """ |
---|
621 | with open(path,'w') as out: |
---|
622 | has_errors = True |
---|
623 | if data.dy is None or not data.dy.any(): |
---|
624 | has_errors = False |
---|
625 | # Sanity check |
---|
626 | if has_errors: |
---|
627 | try: |
---|
628 | if len(data.y) != len(data.dy): |
---|
629 | has_errors = False |
---|
630 | except: |
---|
631 | has_errors = False |
---|
632 | if has_errors: |
---|
633 | if data.dx is not None and data.dx.any(): |
---|
634 | out.write("<X> <Y> <dY> <dX>\n") |
---|
635 | else: |
---|
636 | out.write("<X> <Y> <dY>\n") |
---|
637 | else: |
---|
638 | out.write("<X> <Y>\n") |
---|
639 | |
---|
640 | for i in range(len(data.x)): |
---|
641 | if has_errors: |
---|
642 | if data.dx is not None and data.dx.any(): |
---|
643 | if data.dx[i] is not None: |
---|
644 | out.write("%g %g %g %g\n" % (data.x[i], |
---|
645 | data.y[i], |
---|
646 | data.dy[i], |
---|
647 | data.dx[i])) |
---|
648 | else: |
---|
649 | out.write("%g %g %g\n" % (data.x[i], |
---|
650 | data.y[i], |
---|
651 | data.dy[i])) |
---|
652 | else: |
---|
653 | out.write("%g %g %g\n" % (data.x[i], |
---|
654 | data.y[i], |
---|
655 | data.dy[i])) |
---|
656 | else: |
---|
657 | out.write("%g %g\n" % (data.x[i], |
---|
658 | data.y[i])) |
---|
659 | |
---|
660 | def saveData1D(data): |
---|
661 | """ |
---|
662 | Save 1D data points |
---|
663 | """ |
---|
664 | default_name = os.path.basename(data.filename) |
---|
665 | default_name, extension = os.path.splitext(default_name) |
---|
666 | if not extension: |
---|
667 | extension = ".txt" |
---|
668 | default_name += "_out" + extension |
---|
669 | |
---|
670 | wildcard = "Text files (*.txt);;"\ |
---|
671 | "CanSAS 1D files(*.xml)" |
---|
672 | kwargs = { |
---|
673 | 'caption' : 'Save As', |
---|
674 | 'directory' : default_name, |
---|
675 | 'filter' : wildcard, |
---|
676 | 'parent' : None, |
---|
677 | } |
---|
678 | # Query user for filename. |
---|
679 | filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs) |
---|
680 | filename = filename_tuple[0] |
---|
681 | |
---|
682 | # User cancelled. |
---|
683 | if not filename: |
---|
684 | return |
---|
685 | |
---|
686 | #Instantiate a loader |
---|
687 | loader = Loader() |
---|
688 | if os.path.splitext(filename)[1].lower() == ".txt": |
---|
689 | onTXTSave(data, filename) |
---|
690 | if os.path.splitext(filename)[1].lower() == ".xml": |
---|
691 | loader.save(filename, data, ".xml") |
---|
692 | |
---|
693 | def saveData2D(data): |
---|
694 | """ |
---|
695 | Save data2d dialog |
---|
696 | """ |
---|
697 | default_name = os.path.basename(data.filename) |
---|
698 | default_name, _ = os.path.splitext(default_name) |
---|
699 | ext_format = ".dat" |
---|
700 | default_name += "_out" + ext_format |
---|
701 | |
---|
702 | wildcard = "IGOR/DAT 2D file in Q_map (*.dat)" |
---|
703 | kwargs = { |
---|
704 | 'caption' : 'Save As', |
---|
705 | 'directory' : default_name, |
---|
706 | 'filter' : wildcard, |
---|
707 | 'parent' : None, |
---|
708 | } |
---|
709 | # Query user for filename. |
---|
710 | filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs) |
---|
711 | filename = filename_tuple[0] |
---|
712 | |
---|
713 | # User cancelled. |
---|
714 | if not filename: |
---|
715 | return |
---|
716 | |
---|
717 | #Instantiate a loader |
---|
718 | loader = Loader() |
---|
719 | |
---|
720 | if os.path.splitext(filename)[1].lower() == ext_format: |
---|
721 | loader.save(filename, data, ext_format) |
---|
722 | |
---|
723 | class FormulaValidator(QtGui.QValidator): |
---|
724 | def __init__(self, parent=None): |
---|
725 | super(FormulaValidator, self).__init__(parent) |
---|
726 | |
---|
727 | def validate(self, input, pos): |
---|
728 | |
---|
729 | self._setStyleSheet("") |
---|
730 | return QtGui.QValidator.Acceptable, pos |
---|
731 | |
---|
732 | #try: |
---|
733 | # Formula(str(input)) |
---|
734 | # self._setStyleSheet("") |
---|
735 | # return QtGui.QValidator.Acceptable, pos |
---|
736 | |
---|
737 | #except Exception as e: |
---|
738 | # self._setStyleSheet("background-color:pink;") |
---|
739 | # return QtGui.QValidator.Intermediate, pos |
---|
740 | |
---|
741 | def _setStyleSheet(self, value): |
---|
742 | try: |
---|
743 | if self.parent(): |
---|
744 | self.parent().setStyleSheet(value) |
---|
745 | except: |
---|
746 | pass |
---|
747 | |
---|
748 | def xyTransform(data, xLabel="", yLabel=""): |
---|
749 | """ |
---|
750 | Transforms x and y in View and set the scale |
---|
751 | """ |
---|
752 | # Changing the scale might be incompatible with |
---|
753 | # currently displayed data (for instance, going |
---|
754 | # from ln to log when all plotted values have |
---|
755 | # negative natural logs). |
---|
756 | # Go linear and only change the scale at the end. |
---|
757 | xscale = 'linear' |
---|
758 | yscale = 'linear' |
---|
759 | # Local data is either 1D or 2D |
---|
760 | if data.id == 'fit': |
---|
761 | return |
---|
762 | |
---|
763 | # make sure we have some function to operate on |
---|
764 | if xLabel is None: |
---|
765 | xLabel = 'log10(x)' |
---|
766 | if yLabel is None: |
---|
767 | yLabel = 'log10(y)' |
---|
768 | |
---|
769 | # control axis labels from the panel itself |
---|
770 | yname, yunits = data.get_yaxis() |
---|
771 | xname, xunits = data.get_xaxis() |
---|
772 | |
---|
773 | # Goes through all possible scales |
---|
774 | # self.x_label is already wrapped with Latex "$", so using the argument |
---|
775 | |
---|
776 | # X |
---|
777 | if xLabel == "x": |
---|
778 | data.transformX(DataTransform.toX, DataTransform.errToX) |
---|
779 | xLabel = "%s(%s)" % (xname, xunits) |
---|
780 | if xLabel == "x^(2)": |
---|
781 | data.transformX(DataTransform.toX2, DataTransform.errToX2) |
---|
782 | xunits = convertUnit(2, xunits) |
---|
783 | xLabel = "%s^{2}(%s)" % (xname, xunits) |
---|
784 | if xLabel == "x^(4)": |
---|
785 | data.transformX(DataTransform.toX4, DataTransform.errToX4) |
---|
786 | xunits = convertUnit(4, xunits) |
---|
787 | xLabel = "%s^{4}(%s)" % (xname, xunits) |
---|
788 | if xLabel == "ln(x)": |
---|
789 | data.transformX(DataTransform.toLogX, DataTransform.errToLogX) |
---|
790 | xLabel = "\ln{(%s)}(%s)" % (xname, xunits) |
---|
791 | if xLabel == "log10(x)": |
---|
792 | data.transformX(DataTransform.toX_pos, DataTransform.errToX_pos) |
---|
793 | xscale = 'log' |
---|
794 | xLabel = "%s(%s)" % (xname, xunits) |
---|
795 | if xLabel == "log10(x^(4))": |
---|
796 | data.transformX(DataTransform.toX4, DataTransform.errToX4) |
---|
797 | xunits = convertUnit(4, xunits) |
---|
798 | xLabel = "%s^{4}(%s)" % (xname, xunits) |
---|
799 | xscale = 'log' |
---|
800 | |
---|
801 | # Y |
---|
802 | if yLabel == "ln(y)": |
---|
803 | data.transformY(DataTransform.toLogX, DataTransform.errToLogX) |
---|
804 | yLabel = "\ln{(%s)}(%s)" % (yname, yunits) |
---|
805 | if yLabel == "y": |
---|
806 | data.transformY(DataTransform.toX, DataTransform.errToX) |
---|
807 | yLabel = "%s(%s)" % (yname, yunits) |
---|
808 | if yLabel == "log10(y)": |
---|
809 | data.transformY(DataTransform.toX_pos, DataTransform.errToX_pos) |
---|
810 | yscale = 'log' |
---|
811 | yLabel = "%s(%s)" % (yname, yunits) |
---|
812 | if yLabel == "y^(2)": |
---|
813 | data.transformY(DataTransform.toX2, DataTransform.errToX2) |
---|
814 | yunits = convertUnit(2, yunits) |
---|
815 | yLabel = "%s^{2}(%s)" % (yname, yunits) |
---|
816 | if yLabel == "1/y": |
---|
817 | data.transformY(DataTransform.toOneOverX, DataTransform.errOneOverX) |
---|
818 | yunits = convertUnit(-1, yunits) |
---|
819 | yLabel = "1/%s(%s)" % (yname, yunits) |
---|
820 | if yLabel == "y*x^(2)": |
---|
821 | data.transformY(DataTransform.toYX2, DataTransform.errToYX2) |
---|
822 | xunits = convertUnit(2, xunits) |
---|
823 | yLabel = "%s \ \ %s^{2}(%s%s)" % (yname, xname, yunits, xunits) |
---|
824 | if yLabel == "y*x^(4)": |
---|
825 | data.transformY(DataTransform.toYX4, DataTransform.errToYX4) |
---|
826 | xunits = convertUnit(4, xunits) |
---|
827 | yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits) |
---|
828 | if yLabel == "1/sqrt(y)": |
---|
829 | data.transformY(DataTransform.toOneOverSqrtX, DataTransform.errOneOverSqrtX) |
---|
830 | yunits = convertUnit(-0.5, yunits) |
---|
831 | yLabel = "1/\sqrt{%s}(%s)" % (yname, yunits) |
---|
832 | if yLabel == "ln(y*x)": |
---|
833 | data.transformY(DataTransform.toLogXY, DataTransform.errToLogXY) |
---|
834 | yLabel = "\ln{(%s \ \ %s)}(%s%s)" % (yname, xname, yunits, xunits) |
---|
835 | if yLabel == "ln(y*x^(2))": |
---|
836 | data.transformY(DataTransform.toLogYX2, DataTransform.errToLogYX2) |
---|
837 | xunits = convertUnit(2, xunits) |
---|
838 | yLabel = "\ln (%s \ \ %s^{2})(%s%s)" % (yname, xname, yunits, xunits) |
---|
839 | if yLabel == "ln(y*x^(4))": |
---|
840 | data.transformY(DataTransform.toLogYX4, DataTransform.errToLogYX4) |
---|
841 | xunits = convertUnit(4, xunits) |
---|
842 | yLabel = "\ln (%s \ \ %s^{4})(%s%s)" % (yname, xname, yunits, xunits) |
---|
843 | if yLabel == "log10(y*x^(4))": |
---|
844 | data.transformY(DataTransform.toYX4, DataTransform.errToYX4) |
---|
845 | xunits = convertUnit(4, xunits) |
---|
846 | yscale = 'log' |
---|
847 | yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits) |
---|
848 | |
---|
849 | # Perform the transformation of data in data1d->View |
---|
850 | data.transformView() |
---|
851 | |
---|
852 | return (xLabel, yLabel, xscale, yscale) |
---|
853 | |
---|
854 | def formatNumber(value, high=False): |
---|
855 | """ |
---|
856 | Return a float in a standardized, human-readable formatted string. |
---|
857 | This is used to output readable (e.g. x.xxxe-y) values to the panel. |
---|
858 | """ |
---|
859 | try: |
---|
860 | value = float(value) |
---|
861 | except: |
---|
862 | output = "NaN" |
---|
863 | return output.lstrip().rstrip() |
---|
864 | |
---|
865 | if high: |
---|
866 | output = "%-7.5g" % value |
---|
867 | |
---|
868 | else: |
---|
869 | output = "%-5.3g" % value |
---|
870 | return output.lstrip().rstrip() |
---|
871 | |
---|
872 | def replaceHTMLwithUTF8(html): |
---|
873 | """ |
---|
874 | Replace some important HTML-encoded characters |
---|
875 | with their UTF-8 equivalents |
---|
876 | """ |
---|
877 | # Angstrom |
---|
878 | html_out = html.replace("Å", "Ã
") |
---|
879 | # infinity |
---|
880 | html_out = html_out.replace("∞", "â") |
---|
881 | # +/- |
---|
882 | html_out = html_out.replace("±", "±") |
---|
883 | |
---|
884 | return html_out |
---|
885 | |
---|
886 | def replaceHTMLwithASCII(html): |
---|
887 | """ |
---|
888 | Replace some important HTML-encoded characters |
---|
889 | with their ASCII equivalents |
---|
890 | """ |
---|
891 | # Angstrom |
---|
892 | html_out = html.replace("Å", "Ang") |
---|
893 | # infinity |
---|
894 | html_out = html_out.replace("∞", "inf") |
---|
895 | # +/- |
---|
896 | html_out = html_out.replace("±", "+/-") |
---|
897 | |
---|
898 | return html_out |
---|
899 | |
---|
900 | def convertUnitToUTF8(unit): |
---|
901 | """ |
---|
902 | Convert ASCII unit display into UTF-8 symbol |
---|
903 | """ |
---|
904 | if unit == "1/A": |
---|
905 | return "Ã
<sup>-1</sup>" |
---|
906 | elif unit == "1/cm": |
---|
907 | return "cm<sup>-1</sup>" |
---|
908 | elif unit == "Ang": |
---|
909 | return "Ã
" |
---|
910 | elif unit == "1e-6/Ang^2": |
---|
911 | return "10<sup>-6</sup>/Ã
<sup>2</sup>" |
---|
912 | elif unit == "inf": |
---|
913 | return "â" |
---|
914 | elif unit == "-inf": |
---|
915 | return "-â" |
---|
916 | else: |
---|
917 | return unit |
---|
918 | |
---|
919 | def convertUnitToHTML(unit): |
---|
920 | """ |
---|
921 | Convert ASCII unit display into well rendering HTML |
---|
922 | """ |
---|
923 | if unit == "1/A": |
---|
924 | return "Å<sup>-1</sup>" |
---|
925 | elif unit == "1/cm": |
---|
926 | return "cm<sup>-1</sup>" |
---|
927 | elif unit == "Ang": |
---|
928 | return "Å" |
---|
929 | elif unit == "1e-6/Ang^2": |
---|
930 | return "10<sup>-6</sup>/Å<sup>2</sup>" |
---|
931 | elif unit == "inf": |
---|
932 | return "∞" |
---|
933 | elif unit == "-inf": |
---|
934 | return "-∞" |
---|
935 | else: |
---|
936 | return unit |
---|
937 | |
---|
938 | def parseName(name, expression): |
---|
939 | """ |
---|
940 | remove "_" in front of a name |
---|
941 | """ |
---|
942 | if re.match(expression, name) is not None: |
---|
943 | word = re.split(expression, name, 1) |
---|
944 | for item in word: |
---|
945 | if item.lstrip().rstrip() != '': |
---|
946 | return item |
---|
947 | else: |
---|
948 | return name |
---|
949 | |
---|
950 | def toDouble(value_string): |
---|
951 | """ |
---|
952 | toFloat conversion which cares deeply about user's locale |
---|
953 | """ |
---|
954 | # Holy shit this escalated quickly in Qt5. |
---|
955 | # No more float() cast on general locales. |
---|
956 | value = QtCore.QLocale().toFloat(value_string) |
---|
957 | if value[1]: |
---|
958 | return value[0] |
---|
959 | |
---|
960 | # Try generic locale |
---|
961 | value = QtCore.QLocale(QtCore.QLocale('en_US')).toFloat(value_string) |
---|
962 | if value[1]: |
---|
963 | return value[0] |
---|
964 | else: |
---|
965 | raise TypeError |
---|
966 | |
---|
967 | def findNextFilename(filename, directory): |
---|
968 | """ |
---|
969 | Finds the next available (non-existing) name for 'filename' in 'directory'. |
---|
970 | plugin.py -> plugin (n).py - for first 'n' for which the file doesn't exist |
---|
971 | """ |
---|
972 | basename, ext = os.path.splitext(filename) |
---|
973 | # limit the number of copies |
---|
974 | MAX_FILENAMES = 1000 |
---|
975 | # Start with (1) |
---|
976 | number_ext = 1 |
---|
977 | proposed_filename = "" |
---|
978 | found_filename = False |
---|
979 | # Find the next available filename or exit if too many copies |
---|
980 | while not found_filename or number_ext > MAX_FILENAMES: |
---|
981 | proposed_filename = basename + " ("+str(number_ext)+")" + ext |
---|
982 | if os.path.exists(os.path.join(directory, proposed_filename)): |
---|
983 | number_ext += 1 |
---|
984 | else: |
---|
985 | found_filename = True |
---|
986 | |
---|
987 | return proposed_filename |
---|
988 | |
---|
989 | |
---|
990 | class DoubleValidator(QtGui.QDoubleValidator): |
---|
991 | """ |
---|
992 | Allow only dots as decimal separator |
---|
993 | """ |
---|
994 | def validate(self, input, pos): |
---|
995 | """ |
---|
996 | Return invalid for commas |
---|
997 | """ |
---|
998 | if input is not None and ',' in input: |
---|
999 | return (QtGui.QValidator.Invalid, input, pos) |
---|
1000 | return super(DoubleValidator, self).validate(input, pos) |
---|
1001 | |
---|
1002 | def fixup(self, input): |
---|
1003 | """ |
---|
1004 | Correct (remove) potential preexisting content |
---|
1005 | """ |
---|
1006 | super(DoubleValidator, self).fixup(input) |
---|
1007 | input = input.replace(",", "") |
---|
1008 | |
---|
1009 | def checkModel(path): |
---|
1010 | """ |
---|
1011 | Check that the model save in file 'path' can run. |
---|
1012 | """ |
---|
1013 | # The following return needs to be removed once |
---|
1014 | # the unittest related changes in Sasmodels are commited |
---|
1015 | # return True |
---|
1016 | # try running the model |
---|
1017 | from sasmodels.sasview_model import load_custom_model |
---|
1018 | Model = load_custom_model(path) |
---|
1019 | model = Model() |
---|
1020 | q = np.array([0.01, 0.1]) |
---|
1021 | _ = model.evalDistribution(q) |
---|
1022 | qx, qy = np.array([0.01, 0.01]), np.array([0.1, 0.1]) |
---|
1023 | _ = model.evalDistribution([qx, qy]) |
---|
1024 | |
---|
1025 | # check the model's unit tests run |
---|
1026 | from sasmodels.model_test import run_one |
---|
1027 | # TestSuite module in Qt5 now deletes tests in the suite after running, |
---|
1028 | # so suite[0] in run_one() in sasmodels/model_test.py will contain [None] and |
---|
1029 | # test.info.tests will raise. |
---|
1030 | # Not sure how to change the behaviour here, most likely sasmodels will have to |
---|
1031 | # be modified |
---|
1032 | result = run_one(path) |
---|
1033 | |
---|
1034 | return result |
---|
1035 | |
---|
1036 | |
---|
1037 | def enum(*sequential, **named): |
---|
1038 | """Create an enumeration object from a list of strings""" |
---|
1039 | enums = dict(zip(sequential, range(len(sequential))), **named) |
---|
1040 | return type('Enum', (), enums) |
---|