source: sasview/src/sas/qtgui/Utilities/GuiUtils.py @ fb560d2

ESS_GUIESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalc
Last change on this file since fb560d2 was 6da3e3d, checked in by Laura Forster <Awork@…>, 6 years ago

Merge branch 'ESS_GUI' of https://github.com/SasView/sasview into ESS_GUI

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File size: 35.9 KB
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[57be490]1# -*- coding: utf-8 -*-
[f721030]2"""
[28a84e9]3Global defaults and various utility functions usable by the general GUI
[f721030]4"""
5
6import os
[dc5ef15]7import re
[f721030]8import sys
9import imp
10import warnings
[f82ab8c]11import webbrowser
[b3e8629]12import urllib.parse
[f82ab8c]13
[3b8cc00]14import numpy as np
15
[f721030]16warnings.simplefilter("ignore")
17import logging
18
[4992ff2]19from PyQt5 import QtCore
20from PyQt5 import QtGui
21from PyQt5 import QtWidgets
[f721030]22
[e4676c8]23from periodictable import formula as Formula
[dc5ef15]24from sas.qtgui.Plotting import DataTransform
25from sas.qtgui.Plotting.ConvertUnits import convertUnit
26from sas.qtgui.Plotting.PlotterData import Data1D
27from sas.qtgui.Plotting.PlotterData import Data2D
[28a84e9]28from sas.sascalc.dataloader.loader import Loader
[dc5ef15]29from sas.qtgui.Utilities import CustomDir
[f721030]30
[fef38e8]31## TODO: CHANGE FOR SHIPPED PATH IN RELEASE
32if os.path.splitext(sys.argv[0])[1].lower() != ".py":
33        HELP_DIRECTORY_LOCATION = "doc"
34else:
35        HELP_DIRECTORY_LOCATION = "docs/sphinx-docs/build/html"
36IMAGES_DIRECTORY_LOCATION = HELP_DIRECTORY_LOCATION + "/_images"
[f721030]37
[fd7ef36]38# This matches the ID of a plot created using FittingLogic._create1DPlot, e.g.
39# "5 [P(Q)] modelname"
40# or
41# "4 modelname".
42# Useful for determining whether the plot in question is for an intermediate result, such as P(Q) or S(Q) in the
43# case of a product model; the identifier for this is held in square brackets, as in the example above.
44theory_plot_ID_pattern = re.compile(r"^([0-9]+)\s+(\[(.*)\]\s+)?(.*)$")
45
[f721030]46def get_app_dir():
47    """
48        The application directory is the one where the default custom_config.py
49        file resides.
50
51        :returns: app_path - the path to the applicatin directory
52    """
53    # First, try the directory of the executable we are running
54    app_path = sys.path[0]
55    if os.path.isfile(app_path):
56        app_path = os.path.dirname(app_path)
57    if os.path.isfile(os.path.join(app_path, "custom_config.py")):
58        app_path = os.path.abspath(app_path)
[31c5b58]59        #logging.info("Using application path: %s", app_path)
[f721030]60        return app_path
61
62    # Next, try the current working directory
63    if os.path.isfile(os.path.join(os.getcwd(), "custom_config.py")):
[31c5b58]64        #logging.info("Using application path: %s", os.getcwd())
[f721030]65        return os.path.abspath(os.getcwd())
66
67    # Finally, try the directory of the sasview module
68    # TODO: gui_manager will have to know about sasview until we
69    # clean all these module variables and put them into a config class
70    # that can be passed by sasview.py.
[6cb305a]71    # logging.info(sys.executable)
72    # logging.info(str(sys.argv))
[f721030]73    from sas import sasview as sasview
74    app_path = os.path.dirname(sasview.__file__)
[6cb305a]75    # logging.info("Using application path: %s", app_path)
[f721030]76    return app_path
77
78def get_user_directory():
79    """
80        Returns the user's home directory
81    """
82    userdir = os.path.join(os.path.expanduser("~"), ".sasview")
83    if not os.path.isdir(userdir):
84        os.makedirs(userdir)
85    return userdir
86
[481ff26]87def _find_local_config(confg_file, path):
[f721030]88    """
89        Find configuration file for the current application
90    """
91    config_module = None
92    fObj = None
93    try:
[481ff26]94        fObj, path_config, descr = imp.find_module(confg_file, [path])
95        config_module = imp.load_module(confg_file, fObj, path_config, descr)
[e540cd2]96    except ImportError:
[31c5b58]97        pass
98        #logging.error("Error loading %s/%s: %s" % (path, confg_file, sys.exc_value))
[83eb5208]99    except ValueError:
[b3e8629]100        print("Value error")
[83eb5208]101        pass
[f721030]102    finally:
103        if fObj is not None:
104            fObj.close()
[31c5b58]105    #logging.info("GuiManager loaded %s/%s" % (path, confg_file))
[f721030]106    return config_module
107
108
[3c8242c]109# Get APP folder
110PATH_APP = get_app_dir()
111DATAPATH = PATH_APP
[b0c5e8c]112
[3c8242c]113# Read in the local config, which can either be with the main
114# application or in the installation directory
115config = _find_local_config('local_config', PATH_APP)
116
117if config is None:
118    config = _find_local_config('local_config', os.getcwd())
119else:
120    pass
[f721030]121
[3c8242c]122c_conf_dir = CustomDir.setup_conf_dir(PATH_APP)
[83eb5208]123
[3c8242c]124custom_config = _find_local_config('custom_config', c_conf_dir)
125if custom_config is None:
126    custom_config = _find_local_config('custom_config', os.getcwd())
[f721030]127    if custom_config is None:
[3c8242c]128        msgConfig = "Custom_config file was not imported"
129
130#read some constants from config
131APPLICATION_STATE_EXTENSION = config.APPLICATION_STATE_EXTENSION
132APPLICATION_NAME = config.__appname__
133SPLASH_SCREEN_PATH = config.SPLASH_SCREEN_PATH
134WELCOME_PANEL_ON = config.WELCOME_PANEL_ON
135SPLASH_SCREEN_WIDTH = config.SPLASH_SCREEN_WIDTH
136SPLASH_SCREEN_HEIGHT = config.SPLASH_SCREEN_HEIGHT
137SS_MAX_DISPLAY_TIME = config.SS_MAX_DISPLAY_TIME
138if not WELCOME_PANEL_ON:
139    WELCOME_PANEL_SHOW = False
140else:
141    WELCOME_PANEL_SHOW = True
142try:
143    DATALOADER_SHOW = custom_config.DATALOADER_SHOW
144    TOOLBAR_SHOW = custom_config.TOOLBAR_SHOW
145    FIXED_PANEL = custom_config.FIXED_PANEL
146    if WELCOME_PANEL_ON:
147        WELCOME_PANEL_SHOW = custom_config.WELCOME_PANEL_SHOW
148    PLOPANEL_WIDTH = custom_config.PLOPANEL_WIDTH
149    DATAPANEL_WIDTH = custom_config.DATAPANEL_WIDTH
150    GUIFRAME_WIDTH = custom_config.GUIFRAME_WIDTH
151    GUIFRAME_HEIGHT = custom_config.GUIFRAME_HEIGHT
152    CONTROL_WIDTH = custom_config.CONTROL_WIDTH
153    CONTROL_HEIGHT = custom_config.CONTROL_HEIGHT
154    DEFAULT_PERSPECTIVE = custom_config.DEFAULT_PERSPECTIVE
155    CLEANUP_PLOT = custom_config.CLEANUP_PLOT
156    # custom open_path
157    open_folder = custom_config.DEFAULT_OPEN_FOLDER
[f0bb711]158    if open_folder is not None and os.path.isdir(open_folder):
[3c8242c]159        DEFAULT_OPEN_FOLDER = os.path.abspath(open_folder)
[f721030]160    else:
161        DEFAULT_OPEN_FOLDER = PATH_APP
[3c8242c]162except AttributeError:
163    DATALOADER_SHOW = True
164    TOOLBAR_SHOW = True
165    FIXED_PANEL = True
166    WELCOME_PANEL_SHOW = False
167    PLOPANEL_WIDTH = config.PLOPANEL_WIDTH
168    DATAPANEL_WIDTH = config.DATAPANEL_WIDTH
169    GUIFRAME_WIDTH = config.GUIFRAME_WIDTH
170    GUIFRAME_HEIGHT = config.GUIFRAME_HEIGHT
171    CONTROL_WIDTH = -1
172    CONTROL_HEIGHT = -1
173    DEFAULT_PERSPECTIVE = None
174    CLEANUP_PLOT = False
175    DEFAULT_OPEN_FOLDER = PATH_APP
176
177#DEFAULT_STYLE = config.DEFAULT_STYLE
178
179PLUGIN_STATE_EXTENSIONS = config.PLUGIN_STATE_EXTENSIONS
180OPEN_SAVE_MENU = config.OPEN_SAVE_PROJECT_MENU
181VIEW_MENU = config.VIEW_MENU
182EDIT_MENU = config.EDIT_MENU
183extension_list = []
184if APPLICATION_STATE_EXTENSION is not None:
185    extension_list.append(APPLICATION_STATE_EXTENSION)
186EXTENSIONS = PLUGIN_STATE_EXTENSIONS + extension_list
187try:
188    PLUGINS_WLIST = '|'.join(config.PLUGINS_WLIST)
189except AttributeError:
190    PLUGINS_WLIST = ''
191APPLICATION_WLIST = config.APPLICATION_WLIST
192IS_WIN = True
193IS_LINUX = False
194CLOSE_SHOW = True
195TIME_FACTOR = 2
196NOT_SO_GRAPH_LIST = ["BoxSum"]
[fef38e8]197
[f721030]198
199class Communicate(QtCore.QObject):
200    """
201    Utility class for tracking of the Qt signals
202    """
203    # File got successfully read
204    fileReadSignal = QtCore.pyqtSignal(list)
205
206    # Open File returns "list" of paths
207    fileDataReceivedSignal = QtCore.pyqtSignal(dict)
208
209    # Update Main window status bar with "str"
[f82ab8c]210    # Old "StatusEvent"
[f721030]211    statusBarUpdateSignal = QtCore.pyqtSignal(str)
212
213    # Send data to the current perspective
214    updatePerspectiveWithDataSignal = QtCore.pyqtSignal(list)
[5032ea68]215
216    # New data in current perspective
[a281ab8]217    updateModelFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem)
218
[5236449]219    # New theory data in current perspective
220    updateTheoryFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem)
221
[fd7ef36]222    # Request to delete plots (in the theory view) related to a given model ID
223    deleteIntermediateTheoryPlotsSignal = QtCore.pyqtSignal(str)
224
[f82ab8c]225    # New plot requested from the GUI manager
226    # Old "NewPlotEvent"
[d48cc19]227    plotRequestedSignal = QtCore.pyqtSignal(list)
[f82ab8c]228
[3b3b40b]229    # Plot from file names
230    plotFromFilenameSignal = QtCore.pyqtSignal(str)
231
[7d077d1]232    # Plot update requested from a perspective
233    plotUpdateSignal = QtCore.pyqtSignal(list)
234
[e540cd2]235    # Progress bar update value
236    progressBarUpdateSignal = QtCore.pyqtSignal(int)
237
[8cb6cd6]238    # Workspace charts added/removed
239    activeGraphsSignal = QtCore.pyqtSignal(list)
240
[27313b7]241    # Current workspace chart's name changed
242    activeGraphName = QtCore.pyqtSignal(tuple)
243
[83d6249]244    # Current perspective changed
245    perspectiveChangedSignal = QtCore.pyqtSignal(str)
246
[38eb433]247    # File/dataset got deleted
248    dataDeletedSignal = QtCore.pyqtSignal(list)
249
[d5c5d3d]250    # Send data to Data Operation Utility panel
[f0bb711]251    sendDataToPanelSignal = QtCore.pyqtSignal(dict)
[d5c5d3d]252
253    # Send result of Data Operation Utility panel to Data Explorer
254    updateModelFromDataOperationPanelSignal = QtCore.pyqtSignal(QtGui.QStandardItem, dict)
[f82ab8c]255
[3b3b40b]256    # Notify about a new custom plugin being written/deleted/modified
257    customModelDirectoryChanged = QtCore.pyqtSignal()
258
[d4dac80]259    # Notify the gui manager about new data to be added to the grid view
260    sendDataToGridSignal = QtCore.pyqtSignal(list)
261
[57be490]262    # Action Save Analysis triggered
263    saveAnalysisSignal = QtCore.pyqtSignal()
[d4dac80]264
[e20870bc]265    # Mask Editor requested
266    maskEditorSignal = QtCore.pyqtSignal(Data2D)
267
[8e2cd79]268    # Fitting parameter copy to clipboard
269    copyFitParamsSignal = QtCore.pyqtSignal(str)
270
271    # Fitting parameter paste from clipboard
272    pasteFitParamsSignal = QtCore.pyqtSignal()
[0eff615]273
[3d18691]274    # Notify about new categories/models from category manager
275    updateModelCategoriesSignal = QtCore.pyqtSignal()
[8e2cd79]276
[8548d739]277def updateModelItemWithPlot(item, update_data, name=""):
[a281ab8]278    """
[1042dba]279    Adds a checkboxed row named "name" to QStandardItem
[cee5c78]280    Adds 'update_data' to that row.
[a281ab8]281    """
[e540cd2]282    assert isinstance(item, QtGui.QStandardItem)
[3bdbfcc]283
284    # Check if data with the same ID is already present
285    for index in range(item.rowCount()):
286        plot_item = item.child(index)
287        if plot_item.isCheckable():
[fbfc488]288            plot_data = plot_item.child(0).data()
[6cb305a]289            if plot_data.id is not None and \
290                   (plot_data.name == update_data.name or plot_data.id == update_data.id):
291            # if plot_data.id is not None and plot_data.id == update_data.id:
[7d077d1]292                # replace data section in item
293                plot_item.child(0).setData(update_data)
294                plot_item.setText(name)
[cb4d219]295                # Plot title if any
296                if plot_item.child(1).hasChildren():
297                    plot_item.child(1).child(0).setText("Title: %s"%name)
[7d077d1]298                # Force redisplay
299                return
[a281ab8]300
[5236449]301    # Create the new item
302    checkbox_item = createModelItemWithPlot(update_data, name)
303
304    # Append the new row to the main item
305    item.appendRow(checkbox_item)
306
[0fe7e5b]307def deleteRedundantPlots(item, new_plots):
308    """
309    Checks all plots that are children of the given item; if any have an ID or name not included in new_plots,
310    it is deleted. Useful for e.g. switching from P(Q)S(Q) to P(Q); this would remove the old S(Q) plot.
311
312    Ensure that new_plots contains ALL the relevant plots(!!!)
313    """
314    assert isinstance(item, QtGui.QStandardItem)
315
316    names = [p.name for p in new_plots if p.name is not None]
317    ids = [p.id for p in new_plots if p.id is not None]
318
319    items_to_delete = []
320
321    for index in range(item.rowCount()):
322        plot_item = item.child(index)
323        if plot_item.isCheckable():
324            plot_data = plot_item.child(0).data()
325            if (plot_data.id is not None) and (plot_data.id not in ids) and (plot_data.name not in names):
326                items_to_delete.append(plot_item)
327
328    for plot_item in items_to_delete:
329        item.removeRow(plot_item.row())
330
[6a3e1fe]331class HashableStandardItem(QtGui.QStandardItem):
332    """
333    Subclassed standard item with reimplemented __hash__
334    to allow for use as an index.
335    """
336    def __init__(self, parent=None):
[0261bc1]337        super(HashableStandardItem, self).__init__()
[6a3e1fe]338
339    def __hash__(self):
340        ''' just a random hash value '''
341        #return hash(self.__init__)
342        return 0
343
[0261bc1]344    def clone(self):
345        ''' Assure __hash__ is cloned as well'''
346        clone = super(HashableStandardItem, self).clone()
347        clone.__hash__ = self.__hash__
348        return clone
349
[3933ee9]350def getMonospaceFont():
351    """Convenience function; returns a monospace font to be used in any shells, code editors, etc."""
352
353    # Note: Consolas is only available on Windows; the style hint is used on other operating systems
354    font = QtGui.QFont("Consolas", 10)
355    font.setStyleHint(QtGui.QFont.Monospace, QtGui.QFont.PreferQuality)
356    return font
357
[5236449]358def createModelItemWithPlot(update_data, name=""):
359    """
360    Creates a checkboxed QStandardItem named "name"
[cee5c78]361    Adds 'update_data' to that row.
[5236449]362    """
[b3e8629]363    py_update_data = update_data
[5236449]364
[6a3e1fe]365    checkbox_item = HashableStandardItem()
[a281ab8]366    checkbox_item.setCheckable(True)
367    checkbox_item.setCheckState(QtCore.Qt.Checked)
368    checkbox_item.setText(name)
369
370    # Add "Info" item
[5236449]371    if isinstance(py_update_data, (Data1D, Data2D)):
[1042dba]372        # If Data1/2D added - extract Info from it
373        info_item = infoFromData(py_update_data)
374    else:
375        # otherwise just add a naked item
[481ff26]376        info_item = QtGui.QStandardItem("Info")
[a281ab8]377
378    # Add the actual Data1D/Data2D object
379    object_item = QtGui.QStandardItem()
380    object_item.setData(update_data)
381
[1042dba]382    # Set the data object as the first child
[a281ab8]383    checkbox_item.setChild(0, object_item)
384
[1042dba]385    # Set info_item as the second child
[a281ab8]386    checkbox_item.setChild(1, info_item)
387
[5236449]388    # And return the newly created item
389    return checkbox_item
[1042dba]390
[8548d739]391def updateModelItem(item, update_data, name=""):
392    """
393    Adds a simple named child to QStandardItem
394    """
395    assert isinstance(item, QtGui.QStandardItem)
396
397    # Add the actual Data1D/Data2D object
398    object_item = QtGui.QStandardItem()
399    object_item.setText(name)
[b3e8629]400    object_item.setData(update_data)
[8548d739]401
402    # Append the new row to the main item
403    item.appendRow(object_item)
404
[f1f3e6a]405def updateModelItemStatus(model_item, filename="", name="", status=2):
406    """
407    Update status of checkbox related to high- and low-Q extrapolation
408    choice in Invariant Panel
409    """
410    assert isinstance(model_item, QtGui.QStandardItemModel)
411
412    # Iterate over model looking for items with checkboxes
413    for index in range(model_item.rowCount()):
414        item = model_item.item(index)
[6cb305a]415        if item.text() == filename and item.isCheckable() \
416                and item.checkState() == QtCore.Qt.Checked:
[f1f3e6a]417            # Going 1 level deeper only
418            for index_2 in range(item.rowCount()):
419                item_2 = item.child(index_2)
420                if item_2 and item_2.isCheckable() and item_2.text() == name:
421                    item_2.setCheckState(status)
422
423    return
424
[88e1f57]425def itemFromFilename(filename, model_item):
426    """
427    Returns the model item text=filename in the model
428    """
429    assert isinstance(model_item, QtGui.QStandardItemModel)
[b3e8629]430    assert isinstance(filename, str)
[88e1f57]431
432    # Iterate over model looking for named items
[6cb305a]433    item = list([i for i in [model_item.item(index)
434                             for index in range(model_item.rowCount())]
435                 if str(i.text()) == filename])
[88e1f57]436    return item[0] if len(item)>0 else None
437
[57be490]438def plotsFromModel(model_name, model_item):
439    """
440    Returns the list of plots for the item with model name in the model
441    """
442    assert isinstance(model_item, QtGui.QStandardItem)
443    assert isinstance(model_name, str)
444
445    plot_data = []
446    # Iterate over model looking for named items
447    for index in range(model_item.rowCount()):
448        item = model_item.child(index)
449        if isinstance(item.data(), (Data1D, Data2D)):
450            plot_data.append(item.data())
451        if model_name in str(item.text()):
452            #plot_data.append(item.child(0).data())
453            # Going 1 level deeper only
454            for index_2 in range(item.rowCount()):
455                item_2 = item.child(index_2)
456                if item_2 and isinstance(item_2.data(), (Data1D, Data2D)):
457                    plot_data.append(item_2.data())
458
459    return plot_data
460
[d48cc19]461def plotsFromFilename(filename, model_item):
462    """
463    Returns the list of plots for the item with text=filename in the model
464    """
465    assert isinstance(model_item, QtGui.QStandardItemModel)
[b3e8629]466    assert isinstance(filename, str)
[d48cc19]467
[6ff103a]468    plot_data = {}
[d48cc19]469    # Iterate over model looking for named items
470    for index in range(model_item.rowCount()):
471        item = model_item.item(index)
[685e0e3]472        if filename in str(item.text()):
[d48cc19]473            # TODO: assure item type is correct (either data1/2D or Plotter)
[6ff103a]474            plot_data[item] = item.child(0).data()
[56b22f9]475            # Going 1 level deeper only
476            for index_2 in range(item.rowCount()):
477                item_2 = item.child(index_2)
478                if item_2 and item_2.isCheckable():
479                    # TODO: assure item type is correct (either data1/2D or Plotter)
[6ff103a]480                    plot_data[item_2] = item_2.child(0).data()
[d48cc19]481
482    return plot_data
[8548d739]483
[1042dba]484def plotsFromCheckedItems(model_item):
485    """
486    Returns the list of plots for items in the model which are checked
487    """
[e540cd2]488    assert isinstance(model_item, QtGui.QStandardItemModel)
[1042dba]489
490    plot_data = []
491    # Iterate over model looking for items with checkboxes
[9e426c1]492    for index in range(model_item.rowCount()):
493        item = model_item.item(index)
[6cb305a]494
[9e426c1]495        # Going 1 level deeper only
496        for index_2 in range(item.rowCount()):
497            item_2 = item.child(index_2)
498            if item_2 and item_2.isCheckable() and item_2.checkState() == QtCore.Qt.Checked:
499                # TODO: assure item type is correct (either data1/2D or Plotter)
[fbfc488]500                plot_data.append((item_2, item_2.child(0).data()))
[481ff26]501
[6cb305a]502        if item.isCheckable() and item.checkState() == QtCore.Qt.Checked:
503            # TODO: assure item type is correct (either data1/2D or Plotter)
504            plot_data.append((item, item.child(0).data()))
505
[9e426c1]506    return plot_data
507
508def infoFromData(data):
509    """
510    Given Data1D/Data2D object, extract relevant Info elements
511    and add them to a model item
512    """
[e540cd2]513    assert isinstance(data, (Data1D, Data2D))
[9e426c1]514
[1042dba]515    info_item = QtGui.QStandardItem("Info")
[9e426c1]516
[481ff26]517    title_item = QtGui.QStandardItem("Title: " + data.title)
[1042dba]518    info_item.appendRow(title_item)
[481ff26]519    run_item = QtGui.QStandardItem("Run: " + str(data.run))
[1042dba]520    info_item.appendRow(run_item)
[481ff26]521    type_item = QtGui.QStandardItem("Type: " + str(data.__class__.__name__))
[1042dba]522    info_item.appendRow(type_item)
523
524    if data.path:
[481ff26]525        path_item = QtGui.QStandardItem("Path: " + data.path)
[1042dba]526        info_item.appendRow(path_item)
527
528    if data.instrument:
[481ff26]529        instr_item = QtGui.QStandardItem("Instrument: " + data.instrument)
[1042dba]530        info_item.appendRow(instr_item)
531
532    process_item = QtGui.QStandardItem("Process")
533    if isinstance(data.process, list) and data.process:
534        for process in data.process:
535            process_date = process.date
536            process_date_item = QtGui.QStandardItem("Date: " + process_date)
537            process_item.appendRow(process_date_item)
538
539            process_descr = process.description
540            process_descr_item = QtGui.QStandardItem("Description: " + process_descr)
541            process_item.appendRow(process_descr_item)
542
543            process_name = process.name
544            process_name_item = QtGui.QStandardItem("Name: " + process_name)
545            process_item.appendRow(process_name_item)
546
547    info_item.appendRow(process_item)
[9e426c1]548
549    return info_item
550
[d4dac80]551def dataFromItem(item):
552    """
553    Retrieve Data1D/2D component from QStandardItem.
554    The assumption - data stored in SasView standard, in child 0
555    """
556    return item.child(0).data()
557
[f82ab8c]558def openLink(url):
559    """
560    Open a URL in an external browser.
561    Check the URL first, though.
562    """
[b3e8629]563    parsed_url = urllib.parse.urlparse(url)
[f82ab8c]564    if parsed_url.scheme:
565        webbrowser.open(url)
566    else:
567        msg = "Attempt at opening an invalid URL"
[b3e8629]568        raise AttributeError(msg)
[4b71e91]569
570def retrieveData1d(data):
571    """
572    Retrieve 1D data from file and construct its text
573    representation
574    """
[28a84e9]575    if not isinstance(data, Data1D):
576        msg = "Incorrect type passed to retrieveData1d"
[b3e8629]577        raise AttributeError(msg)
[4b71e91]578    try:
579        xmin = min(data.x)
580        ymin = min(data.y)
581    except:
582        msg = "Unable to find min/max of \n data named %s" % \
583                    data.filename
[31c5b58]584        #logging.error(msg)
[b3e8629]585        raise ValueError(msg)
[4b71e91]586
587    text = data.__str__()
588    text += 'Data Min Max:\n'
589    text += 'X_min = %s:  X_max = %s\n' % (xmin, max(data.x))
590    text += 'Y_min = %s:  Y_max = %s\n' % (ymin, max(data.y))
[d5c5d3d]591    if data.dy is not None:
[4b71e91]592        text += 'dY_min = %s:  dY_max = %s\n' % (min(data.dy), max(data.dy))
593    text += '\nData Points:\n'
594    x_st = "X"
595    for index in range(len(data.x)):
[d5c5d3d]596        if data.dy is not None and len(data.dy) > index:
[4b71e91]597            dy_val = data.dy[index]
598        else:
599            dy_val = 0.0
[d5c5d3d]600        if data.dx is not None and len(data.dx) > index:
[4b71e91]601            dx_val = data.dx[index]
602        else:
603            dx_val = 0.0
[d5c5d3d]604        if data.dxl is not None and len(data.dxl) > index:
[4b71e91]605            if index == 0:
606                x_st = "Xl"
607            dx_val = data.dxl[index]
[d5c5d3d]608        elif data.dxw is not None and len(data.dxw) > index:
[4b71e91]609            if index == 0:
610                x_st = "Xw"
611            dx_val = data.dxw[index]
612
613        if index == 0:
614            text += "<index> \t<X> \t<Y> \t<dY> \t<d%s>\n" % x_st
615        text += "%s \t%s \t%s \t%s \t%s\n" % (index,
616                                                data.x[index],
617                                                data.y[index],
618                                                dy_val,
619                                                dx_val)
620    return text
621
622def retrieveData2d(data):
623    """
[39551a68]624    Retrieve 2D data from file and construct its text
[4b71e91]625    representation
626    """
[39551a68]627    if not isinstance(data, Data2D):
628        msg = "Incorrect type passed to retrieveData2d"
[b3e8629]629        raise AttributeError(msg)
[39551a68]630
[4b71e91]631    text = data.__str__()
632    text += 'Data Min Max:\n'
633    text += 'I_min = %s\n' % min(data.data)
634    text += 'I_max = %s\n\n' % max(data.data)
635    text += 'Data (First 2501) Points:\n'
636    text += 'Data columns include err(I).\n'
637    text += 'ASCII data starts here.\n'
638    text += "<index> \t<Qx> \t<Qy> \t<I> \t<dI> \t<dQparal> \t<dQperp>\n"
639    di_val = 0.0
640    dx_val = 0.0
641    dy_val = 0.0
642    len_data = len(data.qx_data)
[b3e8629]643    for index in range(0, len_data):
[4b71e91]644        x_val = data.qx_data[index]
645        y_val = data.qy_data[index]
646        i_val = data.data[index]
[d5c5d3d]647        if data.err_data is not None:
[4b71e91]648            di_val = data.err_data[index]
[d5c5d3d]649        if data.dqx_data is not None:
[4b71e91]650            dx_val = data.dqx_data[index]
[d5c5d3d]651        if data.dqy_data is not None:
[4b71e91]652            dy_val = data.dqy_data[index]
653
654        text += "%s \t%s \t%s \t%s \t%s \t%s \t%s\n" % (index,
655                                                        x_val,
656                                                        y_val,
657                                                        i_val,
658                                                        di_val,
659                                                        dx_val,
660                                                        dy_val)
661        # Takes too long time for typical data2d: Break here
662        if index >= 2500:
663            text += ".............\n"
664            break
665
666    return text
[28a84e9]667
[39551a68]668def onTXTSave(data, path):
[28a84e9]669    """
670    Save file as formatted txt
671    """
672    with open(path,'w') as out:
673        has_errors = True
[0261bc1]674        if data.dy is None or not data.dy.any():
[28a84e9]675            has_errors = False
676        # Sanity check
677        if has_errors:
678            try:
679                if len(data.y) != len(data.dy):
680                    has_errors = False
681            except:
682                has_errors = False
683        if has_errors:
[0261bc1]684            if data.dx is not None and data.dx.any():
[28a84e9]685                out.write("<X>   <Y>   <dY>   <dX>\n")
686            else:
687                out.write("<X>   <Y>   <dY>\n")
688        else:
689            out.write("<X>   <Y>\n")
690
691        for i in range(len(data.x)):
692            if has_errors:
[0261bc1]693                if data.dx is not None and data.dx.any():
[cee5c78]694                    if  data.dx[i] is not None:
[28a84e9]695                        out.write("%g  %g  %g  %g\n" % (data.x[i],
696                                                        data.y[i],
697                                                        data.dy[i],
698                                                        data.dx[i]))
699                    else:
700                        out.write("%g  %g  %g\n" % (data.x[i],
701                                                    data.y[i],
702                                                    data.dy[i]))
703                else:
704                    out.write("%g  %g  %g\n" % (data.x[i],
705                                                data.y[i],
706                                                data.dy[i]))
707            else:
708                out.write("%g  %g\n" % (data.x[i],
709                                        data.y[i]))
710
711def saveData1D(data):
712    """
713    Save 1D data points
714    """
715    default_name = os.path.basename(data.filename)
716    default_name, extension = os.path.splitext(default_name)
[e694f0f]717    if not extension:
718        extension = ".txt"
[28a84e9]719    default_name += "_out" + extension
720
721    wildcard = "Text files (*.txt);;"\
722                "CanSAS 1D files(*.xml)"
723    kwargs = {
724        'caption'   : 'Save As',
725        'directory' : default_name,
726        'filter'    : wildcard,
727        'parent'    : None,
728    }
729    # Query user for filename.
[d6b8a1d]730    filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs)
731    filename = filename_tuple[0]
[28a84e9]732
733    # User cancelled.
734    if not filename:
735        return
736
737    #Instantiate a loader
738    loader = Loader()
739    if os.path.splitext(filename)[1].lower() == ".txt":
[39551a68]740        onTXTSave(data, filename)
[28a84e9]741    if os.path.splitext(filename)[1].lower() == ".xml":
742        loader.save(filename, data, ".xml")
743
744def saveData2D(data):
745    """
746    Save data2d dialog
747    """
748    default_name = os.path.basename(data.filename)
749    default_name, _ = os.path.splitext(default_name)
750    ext_format = ".dat"
751    default_name += "_out" + ext_format
752
753    wildcard = "IGOR/DAT 2D file in Q_map (*.dat)"
754    kwargs = {
755        'caption'   : 'Save As',
756        'directory' : default_name,
757        'filter'    : wildcard,
758        'parent'    : None,
759    }
760    # Query user for filename.
[d6b8a1d]761    filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs)
762    filename = filename_tuple[0]
[28a84e9]763
764    # User cancelled.
765    if not filename:
766        return
[d6b8a1d]767
[28a84e9]768    #Instantiate a loader
769    loader = Loader()
770
771    if os.path.splitext(filename)[1].lower() == ext_format:
772        loader.save(filename, data, ext_format)
[e4676c8]773
774class FormulaValidator(QtGui.QValidator):
775    def __init__(self, parent=None):
776        super(FormulaValidator, self).__init__(parent)
777 
778    def validate(self, input, pos):
779
[fbfc488]780        self._setStyleSheet("")
781        return QtGui.QValidator.Acceptable, pos
782
783        #try:
784        #    Formula(str(input))
785        #    self._setStyleSheet("")
786        #    return QtGui.QValidator.Acceptable, pos
787
788        #except Exception as e:
789        #    self._setStyleSheet("background-color:pink;")
790        #    return QtGui.QValidator.Intermediate, pos
[e4676c8]791
792    def _setStyleSheet(self, value):
793        try:
794            if self.parent():
795                self.parent().setStyleSheet(value)
796        except:
797            pass
[8548d739]798
[aadf0af1]799def xyTransform(data, xLabel="", yLabel=""):
800    """
801    Transforms x and y in View and set the scale
802    """
803    # Changing the scale might be incompatible with
804    # currently displayed data (for instance, going
805    # from ln to log when all plotted values have
806    # negative natural logs).
807    # Go linear and only change the scale at the end.
808    xscale = 'linear'
809    yscale = 'linear'
810    # Local data is either 1D or 2D
811    if data.id == 'fit':
812        return
813
[bb57068]814    # make sure we have some function to operate on
815    if xLabel is None:
816        xLabel = 'log10(x)'
817    if yLabel is None:
818        yLabel = 'log10(y)'
819
[aadf0af1]820    # control axis labels from the panel itself
821    yname, yunits = data.get_yaxis()
822    xname, xunits = data.get_xaxis()
823
824    # Goes through all possible scales
825    # self.x_label is already wrapped with Latex "$", so using the argument
826
827    # X
828    if xLabel == "x":
[dc5ef15]829        data.transformX(DataTransform.toX, DataTransform.errToX)
[aadf0af1]830        xLabel = "%s(%s)" % (xname, xunits)
831    if xLabel == "x^(2)":
[dc5ef15]832        data.transformX(DataTransform.toX2, DataTransform.errToX2)
833        xunits = convertUnit(2, xunits)
[aadf0af1]834        xLabel = "%s^{2}(%s)" % (xname, xunits)
835    if xLabel == "x^(4)":
[dc5ef15]836        data.transformX(DataTransform.toX4, DataTransform.errToX4)
837        xunits = convertUnit(4, xunits)
[aadf0af1]838        xLabel = "%s^{4}(%s)" % (xname, xunits)
839    if xLabel == "ln(x)":
[dc5ef15]840        data.transformX(DataTransform.toLogX, DataTransform.errToLogX)
[aadf0af1]841        xLabel = "\ln{(%s)}(%s)" % (xname, xunits)
842    if xLabel == "log10(x)":
[dc5ef15]843        data.transformX(DataTransform.toX_pos, DataTransform.errToX_pos)
[aadf0af1]844        xscale = 'log'
845        xLabel = "%s(%s)" % (xname, xunits)
846    if xLabel == "log10(x^(4))":
[dc5ef15]847        data.transformX(DataTransform.toX4, DataTransform.errToX4)
848        xunits = convertUnit(4, xunits)
[aadf0af1]849        xLabel = "%s^{4}(%s)" % (xname, xunits)
850        xscale = 'log'
851
852    # Y
853    if yLabel == "ln(y)":
[dc5ef15]854        data.transformY(DataTransform.toLogX, DataTransform.errToLogX)
[aadf0af1]855        yLabel = "\ln{(%s)}(%s)" % (yname, yunits)
856    if yLabel == "y":
[dc5ef15]857        data.transformY(DataTransform.toX, DataTransform.errToX)
[aadf0af1]858        yLabel = "%s(%s)" % (yname, yunits)
859    if yLabel == "log10(y)":
[dc5ef15]860        data.transformY(DataTransform.toX_pos, DataTransform.errToX_pos)
[aadf0af1]861        yscale = 'log'
862        yLabel = "%s(%s)" % (yname, yunits)
863    if yLabel == "y^(2)":
[dc5ef15]864        data.transformY(DataTransform.toX2, DataTransform.errToX2)
865        yunits = convertUnit(2, yunits)
[aadf0af1]866        yLabel = "%s^{2}(%s)" % (yname, yunits)
867    if yLabel == "1/y":
[dc5ef15]868        data.transformY(DataTransform.toOneOverX, DataTransform.errOneOverX)
869        yunits = convertUnit(-1, yunits)
[aadf0af1]870        yLabel = "1/%s(%s)" % (yname, yunits)
871    if yLabel == "y*x^(2)":
[dc5ef15]872        data.transformY(DataTransform.toYX2, DataTransform.errToYX2)
873        xunits = convertUnit(2, xunits)
[aadf0af1]874        yLabel = "%s \ \ %s^{2}(%s%s)" % (yname, xname, yunits, xunits)
875    if yLabel == "y*x^(4)":
[dc5ef15]876        data.transformY(DataTransform.toYX4, DataTransform.errToYX4)
877        xunits = convertUnit(4, xunits)
[aadf0af1]878        yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits)
879    if yLabel == "1/sqrt(y)":
[dc5ef15]880        data.transformY(DataTransform.toOneOverSqrtX, DataTransform.errOneOverSqrtX)
881        yunits = convertUnit(-0.5, yunits)
[aadf0af1]882        yLabel = "1/\sqrt{%s}(%s)" % (yname, yunits)
883    if yLabel == "ln(y*x)":
[dc5ef15]884        data.transformY(DataTransform.toLogXY, DataTransform.errToLogXY)
[aadf0af1]885        yLabel = "\ln{(%s \ \ %s)}(%s%s)" % (yname, xname, yunits, xunits)
886    if yLabel == "ln(y*x^(2))":
[dc5ef15]887        data.transformY(DataTransform.toLogYX2, DataTransform.errToLogYX2)
888        xunits = convertUnit(2, xunits)
[aadf0af1]889        yLabel = "\ln (%s \ \ %s^{2})(%s%s)" % (yname, xname, yunits, xunits)
890    if yLabel == "ln(y*x^(4))":
[dc5ef15]891        data.transformY(DataTransform.toLogYX4, DataTransform.errToLogYX4)
892        xunits = convertUnit(4, xunits)
[aadf0af1]893        yLabel = "\ln (%s \ \ %s^{4})(%s%s)" % (yname, xname, yunits, xunits)
894    if yLabel == "log10(y*x^(4))":
[dc5ef15]895        data.transformY(DataTransform.toYX4, DataTransform.errToYX4)
896        xunits = convertUnit(4, xunits)
[aadf0af1]897        yscale = 'log'
898        yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits)
899
900    # Perform the transformation of data in data1d->View
901    data.transformView()
902
903    return (xLabel, yLabel, xscale, yscale)
904
[570a58f9]905def formatNumber(value, high=False):
906    """
907    Return a float in a standardized, human-readable formatted string.
908    This is used to output readable (e.g. x.xxxe-y) values to the panel.
909    """
910    try:
911        value = float(value)
912    except:
913        output = "NaN"
914        return output.lstrip().rstrip()
915
916    if high:
[f7f5796]917        output = "%-7.5g" % value
[570a58f9]918
919    else:
920        output = "%-5.3g" % value
921    return output.lstrip().rstrip()
[ad6b4e2]922
[57be490]923def replaceHTMLwithUTF8(html):
924    """
925    Replace some important HTML-encoded characters
926    with their UTF-8 equivalents
927    """
928    # Angstrom
929    html_out = html.replace("&#x212B;", "Å")
930    # infinity
931    html_out = html_out.replace("&#x221e;", "∞")
932    # +/-
933    html_out = html_out.replace("&#177;", "±")
934
935    return html_out
936
937def replaceHTMLwithASCII(html):
938    """
939    Replace some important HTML-encoded characters
940    with their ASCII equivalents
941    """
942    # Angstrom
943    html_out = html.replace("&#x212B;", "Ang")
944    # infinity
945    html_out = html_out.replace("&#x221e;", "inf")
946    # +/-
947    html_out = html_out.replace("&#177;", "+/-")
948
949    return html_out
950
951def convertUnitToUTF8(unit):
952    """
953    Convert ASCII unit display into UTF-8 symbol
954    """
955    if unit == "1/A":
956        return "Å<sup>-1</sup>"
957    elif unit == "1/cm":
958        return "cm<sup>-1</sup>"
959    elif unit == "Ang":
960        return "Å"
961    elif unit == "1e-6/Ang^2":
962        return "10<sup>-6</sup>/Å<sup>2</sup>"
963    elif unit == "inf":
964        return "∞"
965    elif unit == "-inf":
966        return "-∞"
967    else:
968        return unit
969
[ad6b4e2]970def convertUnitToHTML(unit):
971    """
972    Convert ASCII unit display into well rendering HTML
973    """
974    if unit == "1/A":
975        return "&#x212B;<sup>-1</sup>"
976    elif unit == "1/cm":
977        return "cm<sup>-1</sup>"
978    elif unit == "Ang":
979        return "&#x212B;"
980    elif unit == "1e-6/Ang^2":
981        return "10<sup>-6</sup>/&#x212B;<sup>2</sup>"
982    elif unit == "inf":
983        return "&#x221e;"
984    elif unit == "-inf":
985        return "-&#x221e;"
986    else:
987        return unit
[dc5ef15]988
989def parseName(name, expression):
990    """
991    remove "_" in front of a name
992    """
993    if re.match(expression, name) is not None:
994        word = re.split(expression, name, 1)
995        for item in word:           
996            if item.lstrip().rstrip() != '':
997                return item
998    else:
999        return name
[fbfc488]1000
1001def toDouble(value_string):
1002    """
1003    toFloat conversion which cares deeply about user's locale
1004    """
1005    # Holy shit this escalated quickly in Qt5.
1006    # No more float() cast on general locales.
1007    value = QtCore.QLocale().toFloat(value_string)
1008    if value[1]:
1009        return value[0]
1010
1011    # Try generic locale
1012    value = QtCore.QLocale(QtCore.QLocale('en_US')).toFloat(value_string)
1013    if value[1]:
1014        return value[0]
1015    else:
[0261bc1]1016        raise TypeError
[d6b8a1d]1017
[3b3b40b]1018def findNextFilename(filename, directory):
1019    """
1020    Finds the next available (non-existing) name for 'filename' in 'directory'.
1021    plugin.py -> plugin (n).py  - for first 'n' for which the file doesn't exist
1022    """
1023    basename, ext = os.path.splitext(filename)
1024    # limit the number of copies
1025    MAX_FILENAMES = 1000
1026    # Start with (1)
1027    number_ext = 1
1028    proposed_filename = ""
1029    found_filename = False
1030    # Find the next available filename or exit if too many copies
1031    while not found_filename or number_ext > MAX_FILENAMES:
1032        proposed_filename = basename + " ("+str(number_ext)+")" + ext
1033        if os.path.exists(os.path.join(directory, proposed_filename)):
1034            number_ext += 1
1035        else:
1036            found_filename = True
1037
1038    return proposed_filename
1039
1040
[d6b8a1d]1041class DoubleValidator(QtGui.QDoubleValidator):
1042    """
1043    Allow only dots as decimal separator
1044    """
1045    def validate(self, input, pos):
1046        """
1047        Return invalid for commas
1048        """
[0261bc1]1049        if input is not None and ',' in input:
[d6b8a1d]1050            return (QtGui.QValidator.Invalid, input, pos)
1051        return super(DoubleValidator, self).validate(input, pos)
1052
1053    def fixup(self, input):
1054        """
1055        Correct (remove) potential preexisting content
1056        """
[0261bc1]1057        super(DoubleValidator, self).fixup(input)
[d6b8a1d]1058        input = input.replace(",", "")
1059
[3b8cc00]1060def checkModel(path):
1061    """
1062    Check that the model save in file 'path' can run.
1063    """
[27689dc]1064    # The following return needs to be removed once
1065    # the unittest related changes in Sasmodels are commited
[c5e0d84]1066    # return True
[3b8cc00]1067    # try running the model
1068    from sasmodels.sasview_model import load_custom_model
1069    Model = load_custom_model(path)
1070    model = Model()
1071    q =  np.array([0.01, 0.1])
1072    _ = model.evalDistribution(q)
1073    qx, qy =  np.array([0.01, 0.01]), np.array([0.1, 0.1])
1074    _ = model.evalDistribution([qx, qy])
1075
1076    # check the model's unit tests run
1077    from sasmodels.model_test import run_one
1078    # TestSuite module in Qt5 now deletes tests in the suite after running,
1079    # so suite[0] in run_one() in sasmodels/model_test.py will contain [None] and
1080    # test.info.tests will raise.
1081    # Not sure how to change the behaviour here, most likely sasmodels will have to
1082    # be modified
1083    result = run_one(path)
1084
1085    return result
1086
[cb4d219]1087
[d4881f6a]1088def enum(*sequential, **named):
1089    """Create an enumeration object from a list of strings"""
1090    enums = dict(zip(sequential, range(len(sequential))), **named)
1091    return type('Enum', (), enums)
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