source: sasview/src/sas/qtgui/Utilities/GuiUtils.py @ 685602a

ESS_GUIESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalc
Last change on this file since 685602a was 339e22b, checked in by Laura Forster <Awork@…>, 6 years ago

Mask Edit menu item added to Fitting

Mask edit was previously only available via right clicking data before fit, now available on fitting drop down menu option.

  • Property mode set to 100644
File size: 36.0 KB
RevLine 
[57be490]1# -*- coding: utf-8 -*-
[f721030]2"""
[28a84e9]3Global defaults and various utility functions usable by the general GUI
[f721030]4"""
5
6import os
[dc5ef15]7import re
[f721030]8import sys
9import imp
10import warnings
[f82ab8c]11import webbrowser
[b3e8629]12import urllib.parse
[f82ab8c]13
[3b8cc00]14import numpy as np
15
[f721030]16warnings.simplefilter("ignore")
17import logging
18
[4992ff2]19from PyQt5 import QtCore
20from PyQt5 import QtGui
21from PyQt5 import QtWidgets
[f721030]22
[e4676c8]23from periodictable import formula as Formula
[dc5ef15]24from sas.qtgui.Plotting import DataTransform
25from sas.qtgui.Plotting.ConvertUnits import convertUnit
26from sas.qtgui.Plotting.PlotterData import Data1D
27from sas.qtgui.Plotting.PlotterData import Data2D
[28a84e9]28from sas.sascalc.dataloader.loader import Loader
[dc5ef15]29from sas.qtgui.Utilities import CustomDir
[f721030]30
[fef38e8]31## TODO: CHANGE FOR SHIPPED PATH IN RELEASE
32if os.path.splitext(sys.argv[0])[1].lower() != ".py":
33        HELP_DIRECTORY_LOCATION = "doc"
34else:
35        HELP_DIRECTORY_LOCATION = "docs/sphinx-docs/build/html"
36IMAGES_DIRECTORY_LOCATION = HELP_DIRECTORY_LOCATION + "/_images"
[f721030]37
[fd7ef36]38# This matches the ID of a plot created using FittingLogic._create1DPlot, e.g.
39# "5 [P(Q)] modelname"
40# or
41# "4 modelname".
42# Useful for determining whether the plot in question is for an intermediate result, such as P(Q) or S(Q) in the
43# case of a product model; the identifier for this is held in square brackets, as in the example above.
44theory_plot_ID_pattern = re.compile(r"^([0-9]+)\s+(\[(.*)\]\s+)?(.*)$")
45
[f721030]46def get_app_dir():
47    """
48        The application directory is the one where the default custom_config.py
49        file resides.
50
51        :returns: app_path - the path to the applicatin directory
52    """
53    # First, try the directory of the executable we are running
54    app_path = sys.path[0]
55    if os.path.isfile(app_path):
56        app_path = os.path.dirname(app_path)
57    if os.path.isfile(os.path.join(app_path, "custom_config.py")):
58        app_path = os.path.abspath(app_path)
[31c5b58]59        #logging.info("Using application path: %s", app_path)
[f721030]60        return app_path
61
62    # Next, try the current working directory
63    if os.path.isfile(os.path.join(os.getcwd(), "custom_config.py")):
[31c5b58]64        #logging.info("Using application path: %s", os.getcwd())
[f721030]65        return os.path.abspath(os.getcwd())
66
67    # Finally, try the directory of the sasview module
68    # TODO: gui_manager will have to know about sasview until we
69    # clean all these module variables and put them into a config class
70    # that can be passed by sasview.py.
[6cb305a]71    # logging.info(sys.executable)
72    # logging.info(str(sys.argv))
[f721030]73    from sas import sasview as sasview
74    app_path = os.path.dirname(sasview.__file__)
[6cb305a]75    # logging.info("Using application path: %s", app_path)
[f721030]76    return app_path
77
78def get_user_directory():
79    """
80        Returns the user's home directory
81    """
82    userdir = os.path.join(os.path.expanduser("~"), ".sasview")
83    if not os.path.isdir(userdir):
84        os.makedirs(userdir)
85    return userdir
86
[481ff26]87def _find_local_config(confg_file, path):
[f721030]88    """
89        Find configuration file for the current application
90    """
91    config_module = None
92    fObj = None
93    try:
[481ff26]94        fObj, path_config, descr = imp.find_module(confg_file, [path])
95        config_module = imp.load_module(confg_file, fObj, path_config, descr)
[e540cd2]96    except ImportError:
[31c5b58]97        pass
98        #logging.error("Error loading %s/%s: %s" % (path, confg_file, sys.exc_value))
[83eb5208]99    except ValueError:
[b3e8629]100        print("Value error")
[83eb5208]101        pass
[f721030]102    finally:
103        if fObj is not None:
104            fObj.close()
[31c5b58]105    #logging.info("GuiManager loaded %s/%s" % (path, confg_file))
[f721030]106    return config_module
107
108
[3c8242c]109# Get APP folder
110PATH_APP = get_app_dir()
111DATAPATH = PATH_APP
[b0c5e8c]112
[3c8242c]113# Read in the local config, which can either be with the main
114# application or in the installation directory
115config = _find_local_config('local_config', PATH_APP)
116
117if config is None:
118    config = _find_local_config('local_config', os.getcwd())
119else:
120    pass
[f721030]121
[3c8242c]122c_conf_dir = CustomDir.setup_conf_dir(PATH_APP)
[83eb5208]123
[3c8242c]124custom_config = _find_local_config('custom_config', c_conf_dir)
125if custom_config is None:
126    custom_config = _find_local_config('custom_config', os.getcwd())
[f721030]127    if custom_config is None:
[3c8242c]128        msgConfig = "Custom_config file was not imported"
129
130#read some constants from config
131APPLICATION_STATE_EXTENSION = config.APPLICATION_STATE_EXTENSION
132APPLICATION_NAME = config.__appname__
133SPLASH_SCREEN_PATH = config.SPLASH_SCREEN_PATH
134WELCOME_PANEL_ON = config.WELCOME_PANEL_ON
135SPLASH_SCREEN_WIDTH = config.SPLASH_SCREEN_WIDTH
136SPLASH_SCREEN_HEIGHT = config.SPLASH_SCREEN_HEIGHT
137SS_MAX_DISPLAY_TIME = config.SS_MAX_DISPLAY_TIME
138if not WELCOME_PANEL_ON:
139    WELCOME_PANEL_SHOW = False
140else:
141    WELCOME_PANEL_SHOW = True
142try:
143    DATALOADER_SHOW = custom_config.DATALOADER_SHOW
144    TOOLBAR_SHOW = custom_config.TOOLBAR_SHOW
145    FIXED_PANEL = custom_config.FIXED_PANEL
146    if WELCOME_PANEL_ON:
147        WELCOME_PANEL_SHOW = custom_config.WELCOME_PANEL_SHOW
148    PLOPANEL_WIDTH = custom_config.PLOPANEL_WIDTH
149    DATAPANEL_WIDTH = custom_config.DATAPANEL_WIDTH
150    GUIFRAME_WIDTH = custom_config.GUIFRAME_WIDTH
151    GUIFRAME_HEIGHT = custom_config.GUIFRAME_HEIGHT
152    CONTROL_WIDTH = custom_config.CONTROL_WIDTH
153    CONTROL_HEIGHT = custom_config.CONTROL_HEIGHT
154    DEFAULT_PERSPECTIVE = custom_config.DEFAULT_PERSPECTIVE
155    CLEANUP_PLOT = custom_config.CLEANUP_PLOT
156    # custom open_path
157    open_folder = custom_config.DEFAULT_OPEN_FOLDER
[f0bb711]158    if open_folder is not None and os.path.isdir(open_folder):
[3c8242c]159        DEFAULT_OPEN_FOLDER = os.path.abspath(open_folder)
[f721030]160    else:
161        DEFAULT_OPEN_FOLDER = PATH_APP
[3c8242c]162except AttributeError:
163    DATALOADER_SHOW = True
164    TOOLBAR_SHOW = True
165    FIXED_PANEL = True
166    WELCOME_PANEL_SHOW = False
167    PLOPANEL_WIDTH = config.PLOPANEL_WIDTH
168    DATAPANEL_WIDTH = config.DATAPANEL_WIDTH
169    GUIFRAME_WIDTH = config.GUIFRAME_WIDTH
170    GUIFRAME_HEIGHT = config.GUIFRAME_HEIGHT
171    CONTROL_WIDTH = -1
172    CONTROL_HEIGHT = -1
173    DEFAULT_PERSPECTIVE = None
174    CLEANUP_PLOT = False
175    DEFAULT_OPEN_FOLDER = PATH_APP
176
177#DEFAULT_STYLE = config.DEFAULT_STYLE
178
179PLUGIN_STATE_EXTENSIONS = config.PLUGIN_STATE_EXTENSIONS
180OPEN_SAVE_MENU = config.OPEN_SAVE_PROJECT_MENU
181VIEW_MENU = config.VIEW_MENU
182EDIT_MENU = config.EDIT_MENU
183extension_list = []
184if APPLICATION_STATE_EXTENSION is not None:
185    extension_list.append(APPLICATION_STATE_EXTENSION)
186EXTENSIONS = PLUGIN_STATE_EXTENSIONS + extension_list
187try:
188    PLUGINS_WLIST = '|'.join(config.PLUGINS_WLIST)
189except AttributeError:
190    PLUGINS_WLIST = ''
191APPLICATION_WLIST = config.APPLICATION_WLIST
192IS_WIN = True
193IS_LINUX = False
194CLOSE_SHOW = True
195TIME_FACTOR = 2
196NOT_SO_GRAPH_LIST = ["BoxSum"]
[fef38e8]197
[f721030]198
199class Communicate(QtCore.QObject):
200    """
201    Utility class for tracking of the Qt signals
202    """
203    # File got successfully read
204    fileReadSignal = QtCore.pyqtSignal(list)
205
206    # Open File returns "list" of paths
207    fileDataReceivedSignal = QtCore.pyqtSignal(dict)
208
209    # Update Main window status bar with "str"
[f82ab8c]210    # Old "StatusEvent"
[f721030]211    statusBarUpdateSignal = QtCore.pyqtSignal(str)
212
213    # Send data to the current perspective
214    updatePerspectiveWithDataSignal = QtCore.pyqtSignal(list)
[5032ea68]215
216    # New data in current perspective
[a281ab8]217    updateModelFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem)
218
[5236449]219    # New theory data in current perspective
220    updateTheoryFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem)
221
[fd7ef36]222    # Request to delete plots (in the theory view) related to a given model ID
223    deleteIntermediateTheoryPlotsSignal = QtCore.pyqtSignal(str)
224
[f82ab8c]225    # New plot requested from the GUI manager
226    # Old "NewPlotEvent"
[d48cc19]227    plotRequestedSignal = QtCore.pyqtSignal(list)
[f82ab8c]228
[3b3b40b]229    # Plot from file names
230    plotFromFilenameSignal = QtCore.pyqtSignal(str)
231
[7d077d1]232    # Plot update requested from a perspective
233    plotUpdateSignal = QtCore.pyqtSignal(list)
234
[e540cd2]235    # Progress bar update value
236    progressBarUpdateSignal = QtCore.pyqtSignal(int)
237
[8cb6cd6]238    # Workspace charts added/removed
239    activeGraphsSignal = QtCore.pyqtSignal(list)
240
[27313b7]241    # Current workspace chart's name changed
242    activeGraphName = QtCore.pyqtSignal(tuple)
243
[83d6249]244    # Current perspective changed
245    perspectiveChangedSignal = QtCore.pyqtSignal(str)
246
[38eb433]247    # File/dataset got deleted
248    dataDeletedSignal = QtCore.pyqtSignal(list)
249
[d5c5d3d]250    # Send data to Data Operation Utility panel
[f0bb711]251    sendDataToPanelSignal = QtCore.pyqtSignal(dict)
[d5c5d3d]252
253    # Send result of Data Operation Utility panel to Data Explorer
254    updateModelFromDataOperationPanelSignal = QtCore.pyqtSignal(QtGui.QStandardItem, dict)
[f82ab8c]255
[3b3b40b]256    # Notify about a new custom plugin being written/deleted/modified
257    customModelDirectoryChanged = QtCore.pyqtSignal()
258
[d4dac80]259    # Notify the gui manager about new data to be added to the grid view
260    sendDataToGridSignal = QtCore.pyqtSignal(list)
261
[57be490]262    # Action Save Analysis triggered
263    saveAnalysisSignal = QtCore.pyqtSignal()
[d4dac80]264
[e20870bc]265    # Mask Editor requested
266    maskEditorSignal = QtCore.pyqtSignal(Data2D)
267
[339e22b]268    #second Mask Editor for external
269    extMaskEditorSignal = QtCore.pyqtSignal()
270
[8e2cd79]271    # Fitting parameter copy to clipboard
272    copyFitParamsSignal = QtCore.pyqtSignal(str)
273
274    # Fitting parameter paste from clipboard
275    pasteFitParamsSignal = QtCore.pyqtSignal()
[0eff615]276
[3d18691]277    # Notify about new categories/models from category manager
278    updateModelCategoriesSignal = QtCore.pyqtSignal()
[8e2cd79]279
[8548d739]280def updateModelItemWithPlot(item, update_data, name=""):
[a281ab8]281    """
[1042dba]282    Adds a checkboxed row named "name" to QStandardItem
[cee5c78]283    Adds 'update_data' to that row.
[a281ab8]284    """
[e540cd2]285    assert isinstance(item, QtGui.QStandardItem)
[3bdbfcc]286
287    # Check if data with the same ID is already present
288    for index in range(item.rowCount()):
289        plot_item = item.child(index)
290        if plot_item.isCheckable():
[fbfc488]291            plot_data = plot_item.child(0).data()
[6cb305a]292            if plot_data.id is not None and \
293                   (plot_data.name == update_data.name or plot_data.id == update_data.id):
294            # if plot_data.id is not None and plot_data.id == update_data.id:
[7d077d1]295                # replace data section in item
296                plot_item.child(0).setData(update_data)
297                plot_item.setText(name)
[cb4d219]298                # Plot title if any
299                if plot_item.child(1).hasChildren():
300                    plot_item.child(1).child(0).setText("Title: %s"%name)
[7d077d1]301                # Force redisplay
302                return
[a281ab8]303
[5236449]304    # Create the new item
305    checkbox_item = createModelItemWithPlot(update_data, name)
306
307    # Append the new row to the main item
308    item.appendRow(checkbox_item)
309
[0fe7e5b]310def deleteRedundantPlots(item, new_plots):
311    """
312    Checks all plots that are children of the given item; if any have an ID or name not included in new_plots,
313    it is deleted. Useful for e.g. switching from P(Q)S(Q) to P(Q); this would remove the old S(Q) plot.
314
315    Ensure that new_plots contains ALL the relevant plots(!!!)
316    """
317    assert isinstance(item, QtGui.QStandardItem)
318
319    names = [p.name for p in new_plots if p.name is not None]
320    ids = [p.id for p in new_plots if p.id is not None]
321
322    items_to_delete = []
323
324    for index in range(item.rowCount()):
325        plot_item = item.child(index)
326        if plot_item.isCheckable():
327            plot_data = plot_item.child(0).data()
328            if (plot_data.id is not None) and (plot_data.id not in ids) and (plot_data.name not in names):
329                items_to_delete.append(plot_item)
330
331    for plot_item in items_to_delete:
332        item.removeRow(plot_item.row())
333
[6a3e1fe]334class HashableStandardItem(QtGui.QStandardItem):
335    """
336    Subclassed standard item with reimplemented __hash__
337    to allow for use as an index.
338    """
339    def __init__(self, parent=None):
[0261bc1]340        super(HashableStandardItem, self).__init__()
[6a3e1fe]341
342    def __hash__(self):
343        ''' just a random hash value '''
344        #return hash(self.__init__)
345        return 0
346
[0261bc1]347    def clone(self):
348        ''' Assure __hash__ is cloned as well'''
349        clone = super(HashableStandardItem, self).clone()
350        clone.__hash__ = self.__hash__
351        return clone
352
[3933ee9]353def getMonospaceFont():
354    """Convenience function; returns a monospace font to be used in any shells, code editors, etc."""
355
356    # Note: Consolas is only available on Windows; the style hint is used on other operating systems
357    font = QtGui.QFont("Consolas", 10)
358    font.setStyleHint(QtGui.QFont.Monospace, QtGui.QFont.PreferQuality)
359    return font
360
[5236449]361def createModelItemWithPlot(update_data, name=""):
362    """
363    Creates a checkboxed QStandardItem named "name"
[cee5c78]364    Adds 'update_data' to that row.
[5236449]365    """
[b3e8629]366    py_update_data = update_data
[5236449]367
[6a3e1fe]368    checkbox_item = HashableStandardItem()
[a281ab8]369    checkbox_item.setCheckable(True)
370    checkbox_item.setCheckState(QtCore.Qt.Checked)
371    checkbox_item.setText(name)
372
373    # Add "Info" item
[5236449]374    if isinstance(py_update_data, (Data1D, Data2D)):
[1042dba]375        # If Data1/2D added - extract Info from it
376        info_item = infoFromData(py_update_data)
377    else:
378        # otherwise just add a naked item
[481ff26]379        info_item = QtGui.QStandardItem("Info")
[a281ab8]380
381    # Add the actual Data1D/Data2D object
382    object_item = QtGui.QStandardItem()
383    object_item.setData(update_data)
384
[1042dba]385    # Set the data object as the first child
[a281ab8]386    checkbox_item.setChild(0, object_item)
387
[1042dba]388    # Set info_item as the second child
[a281ab8]389    checkbox_item.setChild(1, info_item)
390
[5236449]391    # And return the newly created item
392    return checkbox_item
[1042dba]393
[8548d739]394def updateModelItem(item, update_data, name=""):
395    """
396    Adds a simple named child to QStandardItem
397    """
398    assert isinstance(item, QtGui.QStandardItem)
399
400    # Add the actual Data1D/Data2D object
401    object_item = QtGui.QStandardItem()
402    object_item.setText(name)
[b3e8629]403    object_item.setData(update_data)
[8548d739]404
405    # Append the new row to the main item
406    item.appendRow(object_item)
407
[f1f3e6a]408def updateModelItemStatus(model_item, filename="", name="", status=2):
409    """
410    Update status of checkbox related to high- and low-Q extrapolation
411    choice in Invariant Panel
412    """
413    assert isinstance(model_item, QtGui.QStandardItemModel)
414
415    # Iterate over model looking for items with checkboxes
416    for index in range(model_item.rowCount()):
417        item = model_item.item(index)
[6cb305a]418        if item.text() == filename and item.isCheckable() \
419                and item.checkState() == QtCore.Qt.Checked:
[f1f3e6a]420            # Going 1 level deeper only
421            for index_2 in range(item.rowCount()):
422                item_2 = item.child(index_2)
423                if item_2 and item_2.isCheckable() and item_2.text() == name:
424                    item_2.setCheckState(status)
425
426    return
427
[88e1f57]428def itemFromFilename(filename, model_item):
429    """
430    Returns the model item text=filename in the model
431    """
432    assert isinstance(model_item, QtGui.QStandardItemModel)
[b3e8629]433    assert isinstance(filename, str)
[88e1f57]434
435    # Iterate over model looking for named items
[6cb305a]436    item = list([i for i in [model_item.item(index)
437                             for index in range(model_item.rowCount())]
438                 if str(i.text()) == filename])
[88e1f57]439    return item[0] if len(item)>0 else None
440
[57be490]441def plotsFromModel(model_name, model_item):
442    """
443    Returns the list of plots for the item with model name in the model
444    """
445    assert isinstance(model_item, QtGui.QStandardItem)
446    assert isinstance(model_name, str)
447
448    plot_data = []
449    # Iterate over model looking for named items
450    for index in range(model_item.rowCount()):
451        item = model_item.child(index)
452        if isinstance(item.data(), (Data1D, Data2D)):
453            plot_data.append(item.data())
454        if model_name in str(item.text()):
455            #plot_data.append(item.child(0).data())
456            # Going 1 level deeper only
457            for index_2 in range(item.rowCount()):
458                item_2 = item.child(index_2)
459                if item_2 and isinstance(item_2.data(), (Data1D, Data2D)):
460                    plot_data.append(item_2.data())
461
462    return plot_data
463
[d48cc19]464def plotsFromFilename(filename, model_item):
465    """
466    Returns the list of plots for the item with text=filename in the model
467    """
468    assert isinstance(model_item, QtGui.QStandardItemModel)
[b3e8629]469    assert isinstance(filename, str)
[d48cc19]470
[6ff103a]471    plot_data = {}
[d48cc19]472    # Iterate over model looking for named items
473    for index in range(model_item.rowCount()):
474        item = model_item.item(index)
[685e0e3]475        if filename in str(item.text()):
[d48cc19]476            # TODO: assure item type is correct (either data1/2D or Plotter)
[6ff103a]477            plot_data[item] = item.child(0).data()
[56b22f9]478            # Going 1 level deeper only
479            for index_2 in range(item.rowCount()):
480                item_2 = item.child(index_2)
481                if item_2 and item_2.isCheckable():
482                    # TODO: assure item type is correct (either data1/2D or Plotter)
[6ff103a]483                    plot_data[item_2] = item_2.child(0).data()
[d48cc19]484
485    return plot_data
[8548d739]486
[1042dba]487def plotsFromCheckedItems(model_item):
488    """
489    Returns the list of plots for items in the model which are checked
490    """
[e540cd2]491    assert isinstance(model_item, QtGui.QStandardItemModel)
[1042dba]492
493    plot_data = []
494    # Iterate over model looking for items with checkboxes
[9e426c1]495    for index in range(model_item.rowCount()):
496        item = model_item.item(index)
[6cb305a]497
[9e426c1]498        # Going 1 level deeper only
499        for index_2 in range(item.rowCount()):
500            item_2 = item.child(index_2)
501            if item_2 and item_2.isCheckable() and item_2.checkState() == QtCore.Qt.Checked:
502                # TODO: assure item type is correct (either data1/2D or Plotter)
[fbfc488]503                plot_data.append((item_2, item_2.child(0).data()))
[481ff26]504
[6cb305a]505        if item.isCheckable() and item.checkState() == QtCore.Qt.Checked:
506            # TODO: assure item type is correct (either data1/2D or Plotter)
507            plot_data.append((item, item.child(0).data()))
508
[9e426c1]509    return plot_data
510
511def infoFromData(data):
512    """
513    Given Data1D/Data2D object, extract relevant Info elements
514    and add them to a model item
515    """
[e540cd2]516    assert isinstance(data, (Data1D, Data2D))
[9e426c1]517
[1042dba]518    info_item = QtGui.QStandardItem("Info")
[9e426c1]519
[481ff26]520    title_item = QtGui.QStandardItem("Title: " + data.title)
[1042dba]521    info_item.appendRow(title_item)
[481ff26]522    run_item = QtGui.QStandardItem("Run: " + str(data.run))
[1042dba]523    info_item.appendRow(run_item)
[481ff26]524    type_item = QtGui.QStandardItem("Type: " + str(data.__class__.__name__))
[1042dba]525    info_item.appendRow(type_item)
526
527    if data.path:
[481ff26]528        path_item = QtGui.QStandardItem("Path: " + data.path)
[1042dba]529        info_item.appendRow(path_item)
530
531    if data.instrument:
[481ff26]532        instr_item = QtGui.QStandardItem("Instrument: " + data.instrument)
[1042dba]533        info_item.appendRow(instr_item)
534
535    process_item = QtGui.QStandardItem("Process")
536    if isinstance(data.process, list) and data.process:
537        for process in data.process:
538            process_date = process.date
539            process_date_item = QtGui.QStandardItem("Date: " + process_date)
540            process_item.appendRow(process_date_item)
541
542            process_descr = process.description
543            process_descr_item = QtGui.QStandardItem("Description: " + process_descr)
544            process_item.appendRow(process_descr_item)
545
546            process_name = process.name
547            process_name_item = QtGui.QStandardItem("Name: " + process_name)
548            process_item.appendRow(process_name_item)
549
550    info_item.appendRow(process_item)
[9e426c1]551
552    return info_item
553
[d4dac80]554def dataFromItem(item):
555    """
556    Retrieve Data1D/2D component from QStandardItem.
557    The assumption - data stored in SasView standard, in child 0
558    """
559    return item.child(0).data()
560
[f82ab8c]561def openLink(url):
562    """
563    Open a URL in an external browser.
564    Check the URL first, though.
565    """
[b3e8629]566    parsed_url = urllib.parse.urlparse(url)
[f82ab8c]567    if parsed_url.scheme:
568        webbrowser.open(url)
569    else:
570        msg = "Attempt at opening an invalid URL"
[b3e8629]571        raise AttributeError(msg)
[4b71e91]572
573def retrieveData1d(data):
574    """
575    Retrieve 1D data from file and construct its text
576    representation
577    """
[28a84e9]578    if not isinstance(data, Data1D):
579        msg = "Incorrect type passed to retrieveData1d"
[b3e8629]580        raise AttributeError(msg)
[4b71e91]581    try:
582        xmin = min(data.x)
583        ymin = min(data.y)
584    except:
585        msg = "Unable to find min/max of \n data named %s" % \
586                    data.filename
[31c5b58]587        #logging.error(msg)
[b3e8629]588        raise ValueError(msg)
[4b71e91]589
590    text = data.__str__()
591    text += 'Data Min Max:\n'
592    text += 'X_min = %s:  X_max = %s\n' % (xmin, max(data.x))
593    text += 'Y_min = %s:  Y_max = %s\n' % (ymin, max(data.y))
[d5c5d3d]594    if data.dy is not None:
[4b71e91]595        text += 'dY_min = %s:  dY_max = %s\n' % (min(data.dy), max(data.dy))
596    text += '\nData Points:\n'
597    x_st = "X"
598    for index in range(len(data.x)):
[d5c5d3d]599        if data.dy is not None and len(data.dy) > index:
[4b71e91]600            dy_val = data.dy[index]
601        else:
602            dy_val = 0.0
[d5c5d3d]603        if data.dx is not None and len(data.dx) > index:
[4b71e91]604            dx_val = data.dx[index]
605        else:
606            dx_val = 0.0
[d5c5d3d]607        if data.dxl is not None and len(data.dxl) > index:
[4b71e91]608            if index == 0:
609                x_st = "Xl"
610            dx_val = data.dxl[index]
[d5c5d3d]611        elif data.dxw is not None and len(data.dxw) > index:
[4b71e91]612            if index == 0:
613                x_st = "Xw"
614            dx_val = data.dxw[index]
615
616        if index == 0:
617            text += "<index> \t<X> \t<Y> \t<dY> \t<d%s>\n" % x_st
618        text += "%s \t%s \t%s \t%s \t%s\n" % (index,
619                                                data.x[index],
620                                                data.y[index],
621                                                dy_val,
622                                                dx_val)
623    return text
624
625def retrieveData2d(data):
626    """
[39551a68]627    Retrieve 2D data from file and construct its text
[4b71e91]628    representation
629    """
[39551a68]630    if not isinstance(data, Data2D):
631        msg = "Incorrect type passed to retrieveData2d"
[b3e8629]632        raise AttributeError(msg)
[39551a68]633
[4b71e91]634    text = data.__str__()
635    text += 'Data Min Max:\n'
636    text += 'I_min = %s\n' % min(data.data)
637    text += 'I_max = %s\n\n' % max(data.data)
638    text += 'Data (First 2501) Points:\n'
639    text += 'Data columns include err(I).\n'
640    text += 'ASCII data starts here.\n'
641    text += "<index> \t<Qx> \t<Qy> \t<I> \t<dI> \t<dQparal> \t<dQperp>\n"
642    di_val = 0.0
643    dx_val = 0.0
644    dy_val = 0.0
645    len_data = len(data.qx_data)
[b3e8629]646    for index in range(0, len_data):
[4b71e91]647        x_val = data.qx_data[index]
648        y_val = data.qy_data[index]
649        i_val = data.data[index]
[d5c5d3d]650        if data.err_data is not None:
[4b71e91]651            di_val = data.err_data[index]
[d5c5d3d]652        if data.dqx_data is not None:
[4b71e91]653            dx_val = data.dqx_data[index]
[d5c5d3d]654        if data.dqy_data is not None:
[4b71e91]655            dy_val = data.dqy_data[index]
656
657        text += "%s \t%s \t%s \t%s \t%s \t%s \t%s\n" % (index,
658                                                        x_val,
659                                                        y_val,
660                                                        i_val,
661                                                        di_val,
662                                                        dx_val,
663                                                        dy_val)
664        # Takes too long time for typical data2d: Break here
665        if index >= 2500:
666            text += ".............\n"
667            break
668
669    return text
[28a84e9]670
[39551a68]671def onTXTSave(data, path):
[28a84e9]672    """
673    Save file as formatted txt
674    """
675    with open(path,'w') as out:
676        has_errors = True
[0261bc1]677        if data.dy is None or not data.dy.any():
[28a84e9]678            has_errors = False
679        # Sanity check
680        if has_errors:
681            try:
682                if len(data.y) != len(data.dy):
683                    has_errors = False
684            except:
685                has_errors = False
686        if has_errors:
[0261bc1]687            if data.dx is not None and data.dx.any():
[28a84e9]688                out.write("<X>   <Y>   <dY>   <dX>\n")
689            else:
690                out.write("<X>   <Y>   <dY>\n")
691        else:
692            out.write("<X>   <Y>\n")
693
694        for i in range(len(data.x)):
695            if has_errors:
[0261bc1]696                if data.dx is not None and data.dx.any():
[cee5c78]697                    if  data.dx[i] is not None:
[28a84e9]698                        out.write("%g  %g  %g  %g\n" % (data.x[i],
699                                                        data.y[i],
700                                                        data.dy[i],
701                                                        data.dx[i]))
702                    else:
703                        out.write("%g  %g  %g\n" % (data.x[i],
704                                                    data.y[i],
705                                                    data.dy[i]))
706                else:
707                    out.write("%g  %g  %g\n" % (data.x[i],
708                                                data.y[i],
709                                                data.dy[i]))
710            else:
711                out.write("%g  %g\n" % (data.x[i],
712                                        data.y[i]))
713
714def saveData1D(data):
715    """
716    Save 1D data points
717    """
718    default_name = os.path.basename(data.filename)
719    default_name, extension = os.path.splitext(default_name)
[e694f0f]720    if not extension:
721        extension = ".txt"
[28a84e9]722    default_name += "_out" + extension
723
724    wildcard = "Text files (*.txt);;"\
725                "CanSAS 1D files(*.xml)"
726    kwargs = {
727        'caption'   : 'Save As',
728        'directory' : default_name,
729        'filter'    : wildcard,
730        'parent'    : None,
731    }
732    # Query user for filename.
[d6b8a1d]733    filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs)
734    filename = filename_tuple[0]
[28a84e9]735
736    # User cancelled.
737    if not filename:
738        return
739
740    #Instantiate a loader
741    loader = Loader()
742    if os.path.splitext(filename)[1].lower() == ".txt":
[39551a68]743        onTXTSave(data, filename)
[28a84e9]744    if os.path.splitext(filename)[1].lower() == ".xml":
745        loader.save(filename, data, ".xml")
746
747def saveData2D(data):
748    """
749    Save data2d dialog
750    """
751    default_name = os.path.basename(data.filename)
752    default_name, _ = os.path.splitext(default_name)
753    ext_format = ".dat"
754    default_name += "_out" + ext_format
755
756    wildcard = "IGOR/DAT 2D file in Q_map (*.dat)"
757    kwargs = {
758        'caption'   : 'Save As',
759        'directory' : default_name,
760        'filter'    : wildcard,
761        'parent'    : None,
762    }
763    # Query user for filename.
[d6b8a1d]764    filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs)
765    filename = filename_tuple[0]
[28a84e9]766
767    # User cancelled.
768    if not filename:
769        return
[d6b8a1d]770
[28a84e9]771    #Instantiate a loader
772    loader = Loader()
773
774    if os.path.splitext(filename)[1].lower() == ext_format:
775        loader.save(filename, data, ext_format)
[e4676c8]776
777class FormulaValidator(QtGui.QValidator):
778    def __init__(self, parent=None):
779        super(FormulaValidator, self).__init__(parent)
780 
781    def validate(self, input, pos):
782
[fbfc488]783        self._setStyleSheet("")
784        return QtGui.QValidator.Acceptable, pos
785
786        #try:
787        #    Formula(str(input))
788        #    self._setStyleSheet("")
789        #    return QtGui.QValidator.Acceptable, pos
790
791        #except Exception as e:
792        #    self._setStyleSheet("background-color:pink;")
793        #    return QtGui.QValidator.Intermediate, pos
[e4676c8]794
795    def _setStyleSheet(self, value):
796        try:
797            if self.parent():
798                self.parent().setStyleSheet(value)
799        except:
800            pass
[8548d739]801
[aadf0af1]802def xyTransform(data, xLabel="", yLabel=""):
803    """
804    Transforms x and y in View and set the scale
805    """
806    # Changing the scale might be incompatible with
807    # currently displayed data (for instance, going
808    # from ln to log when all plotted values have
809    # negative natural logs).
810    # Go linear and only change the scale at the end.
811    xscale = 'linear'
812    yscale = 'linear'
813    # Local data is either 1D or 2D
814    if data.id == 'fit':
815        return
816
[bb57068]817    # make sure we have some function to operate on
818    if xLabel is None:
819        xLabel = 'log10(x)'
820    if yLabel is None:
821        yLabel = 'log10(y)'
822
[aadf0af1]823    # control axis labels from the panel itself
824    yname, yunits = data.get_yaxis()
825    xname, xunits = data.get_xaxis()
826
827    # Goes through all possible scales
828    # self.x_label is already wrapped with Latex "$", so using the argument
829
830    # X
831    if xLabel == "x":
[dc5ef15]832        data.transformX(DataTransform.toX, DataTransform.errToX)
[aadf0af1]833        xLabel = "%s(%s)" % (xname, xunits)
834    if xLabel == "x^(2)":
[dc5ef15]835        data.transformX(DataTransform.toX2, DataTransform.errToX2)
836        xunits = convertUnit(2, xunits)
[aadf0af1]837        xLabel = "%s^{2}(%s)" % (xname, xunits)
838    if xLabel == "x^(4)":
[dc5ef15]839        data.transformX(DataTransform.toX4, DataTransform.errToX4)
840        xunits = convertUnit(4, xunits)
[aadf0af1]841        xLabel = "%s^{4}(%s)" % (xname, xunits)
842    if xLabel == "ln(x)":
[dc5ef15]843        data.transformX(DataTransform.toLogX, DataTransform.errToLogX)
[aadf0af1]844        xLabel = "\ln{(%s)}(%s)" % (xname, xunits)
845    if xLabel == "log10(x)":
[dc5ef15]846        data.transformX(DataTransform.toX_pos, DataTransform.errToX_pos)
[aadf0af1]847        xscale = 'log'
848        xLabel = "%s(%s)" % (xname, xunits)
849    if xLabel == "log10(x^(4))":
[dc5ef15]850        data.transformX(DataTransform.toX4, DataTransform.errToX4)
851        xunits = convertUnit(4, xunits)
[aadf0af1]852        xLabel = "%s^{4}(%s)" % (xname, xunits)
853        xscale = 'log'
854
855    # Y
856    if yLabel == "ln(y)":
[dc5ef15]857        data.transformY(DataTransform.toLogX, DataTransform.errToLogX)
[aadf0af1]858        yLabel = "\ln{(%s)}(%s)" % (yname, yunits)
859    if yLabel == "y":
[dc5ef15]860        data.transformY(DataTransform.toX, DataTransform.errToX)
[aadf0af1]861        yLabel = "%s(%s)" % (yname, yunits)
862    if yLabel == "log10(y)":
[dc5ef15]863        data.transformY(DataTransform.toX_pos, DataTransform.errToX_pos)
[aadf0af1]864        yscale = 'log'
865        yLabel = "%s(%s)" % (yname, yunits)
866    if yLabel == "y^(2)":
[dc5ef15]867        data.transformY(DataTransform.toX2, DataTransform.errToX2)
868        yunits = convertUnit(2, yunits)
[aadf0af1]869        yLabel = "%s^{2}(%s)" % (yname, yunits)
870    if yLabel == "1/y":
[dc5ef15]871        data.transformY(DataTransform.toOneOverX, DataTransform.errOneOverX)
872        yunits = convertUnit(-1, yunits)
[aadf0af1]873        yLabel = "1/%s(%s)" % (yname, yunits)
874    if yLabel == "y*x^(2)":
[dc5ef15]875        data.transformY(DataTransform.toYX2, DataTransform.errToYX2)
876        xunits = convertUnit(2, xunits)
[aadf0af1]877        yLabel = "%s \ \ %s^{2}(%s%s)" % (yname, xname, yunits, xunits)
878    if yLabel == "y*x^(4)":
[dc5ef15]879        data.transformY(DataTransform.toYX4, DataTransform.errToYX4)
880        xunits = convertUnit(4, xunits)
[aadf0af1]881        yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits)
882    if yLabel == "1/sqrt(y)":
[dc5ef15]883        data.transformY(DataTransform.toOneOverSqrtX, DataTransform.errOneOverSqrtX)
884        yunits = convertUnit(-0.5, yunits)
[aadf0af1]885        yLabel = "1/\sqrt{%s}(%s)" % (yname, yunits)
886    if yLabel == "ln(y*x)":
[dc5ef15]887        data.transformY(DataTransform.toLogXY, DataTransform.errToLogXY)
[aadf0af1]888        yLabel = "\ln{(%s \ \ %s)}(%s%s)" % (yname, xname, yunits, xunits)
889    if yLabel == "ln(y*x^(2))":
[dc5ef15]890        data.transformY(DataTransform.toLogYX2, DataTransform.errToLogYX2)
891        xunits = convertUnit(2, xunits)
[aadf0af1]892        yLabel = "\ln (%s \ \ %s^{2})(%s%s)" % (yname, xname, yunits, xunits)
893    if yLabel == "ln(y*x^(4))":
[dc5ef15]894        data.transformY(DataTransform.toLogYX4, DataTransform.errToLogYX4)
895        xunits = convertUnit(4, xunits)
[aadf0af1]896        yLabel = "\ln (%s \ \ %s^{4})(%s%s)" % (yname, xname, yunits, xunits)
897    if yLabel == "log10(y*x^(4))":
[dc5ef15]898        data.transformY(DataTransform.toYX4, DataTransform.errToYX4)
899        xunits = convertUnit(4, xunits)
[aadf0af1]900        yscale = 'log'
901        yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits)
902
903    # Perform the transformation of data in data1d->View
904    data.transformView()
905
906    return (xLabel, yLabel, xscale, yscale)
907
[570a58f9]908def formatNumber(value, high=False):
909    """
910    Return a float in a standardized, human-readable formatted string.
911    This is used to output readable (e.g. x.xxxe-y) values to the panel.
912    """
913    try:
914        value = float(value)
915    except:
916        output = "NaN"
917        return output.lstrip().rstrip()
918
919    if high:
[f7f5796]920        output = "%-7.5g" % value
[570a58f9]921
922    else:
923        output = "%-5.3g" % value
924    return output.lstrip().rstrip()
[ad6b4e2]925
[57be490]926def replaceHTMLwithUTF8(html):
927    """
928    Replace some important HTML-encoded characters
929    with their UTF-8 equivalents
930    """
931    # Angstrom
932    html_out = html.replace("&#x212B;", "Å")
933    # infinity
934    html_out = html_out.replace("&#x221e;", "∞")
935    # +/-
936    html_out = html_out.replace("&#177;", "±")
937
938    return html_out
939
940def replaceHTMLwithASCII(html):
941    """
942    Replace some important HTML-encoded characters
943    with their ASCII equivalents
944    """
945    # Angstrom
946    html_out = html.replace("&#x212B;", "Ang")
947    # infinity
948    html_out = html_out.replace("&#x221e;", "inf")
949    # +/-
950    html_out = html_out.replace("&#177;", "+/-")
951
952    return html_out
953
954def convertUnitToUTF8(unit):
955    """
956    Convert ASCII unit display into UTF-8 symbol
957    """
958    if unit == "1/A":
959        return "Å<sup>-1</sup>"
960    elif unit == "1/cm":
961        return "cm<sup>-1</sup>"
962    elif unit == "Ang":
963        return "Å"
964    elif unit == "1e-6/Ang^2":
965        return "10<sup>-6</sup>/Å<sup>2</sup>"
966    elif unit == "inf":
967        return "∞"
968    elif unit == "-inf":
969        return "-∞"
970    else:
971        return unit
972
[ad6b4e2]973def convertUnitToHTML(unit):
974    """
975    Convert ASCII unit display into well rendering HTML
976    """
977    if unit == "1/A":
978        return "&#x212B;<sup>-1</sup>"
979    elif unit == "1/cm":
980        return "cm<sup>-1</sup>"
981    elif unit == "Ang":
982        return "&#x212B;"
983    elif unit == "1e-6/Ang^2":
984        return "10<sup>-6</sup>/&#x212B;<sup>2</sup>"
985    elif unit == "inf":
986        return "&#x221e;"
987    elif unit == "-inf":
988        return "-&#x221e;"
989    else:
990        return unit
[dc5ef15]991
992def parseName(name, expression):
993    """
994    remove "_" in front of a name
995    """
996    if re.match(expression, name) is not None:
997        word = re.split(expression, name, 1)
998        for item in word:           
999            if item.lstrip().rstrip() != '':
1000                return item
1001    else:
1002        return name
[fbfc488]1003
1004def toDouble(value_string):
1005    """
1006    toFloat conversion which cares deeply about user's locale
1007    """
1008    # Holy shit this escalated quickly in Qt5.
1009    # No more float() cast on general locales.
1010    value = QtCore.QLocale().toFloat(value_string)
1011    if value[1]:
1012        return value[0]
1013
1014    # Try generic locale
1015    value = QtCore.QLocale(QtCore.QLocale('en_US')).toFloat(value_string)
1016    if value[1]:
1017        return value[0]
1018    else:
[0261bc1]1019        raise TypeError
[d6b8a1d]1020
[3b3b40b]1021def findNextFilename(filename, directory):
1022    """
1023    Finds the next available (non-existing) name for 'filename' in 'directory'.
1024    plugin.py -> plugin (n).py  - for first 'n' for which the file doesn't exist
1025    """
1026    basename, ext = os.path.splitext(filename)
1027    # limit the number of copies
1028    MAX_FILENAMES = 1000
1029    # Start with (1)
1030    number_ext = 1
1031    proposed_filename = ""
1032    found_filename = False
1033    # Find the next available filename or exit if too many copies
1034    while not found_filename or number_ext > MAX_FILENAMES:
1035        proposed_filename = basename + " ("+str(number_ext)+")" + ext
1036        if os.path.exists(os.path.join(directory, proposed_filename)):
1037            number_ext += 1
1038        else:
1039            found_filename = True
1040
1041    return proposed_filename
1042
1043
[d6b8a1d]1044class DoubleValidator(QtGui.QDoubleValidator):
1045    """
1046    Allow only dots as decimal separator
1047    """
1048    def validate(self, input, pos):
1049        """
1050        Return invalid for commas
1051        """
[0261bc1]1052        if input is not None and ',' in input:
[d6b8a1d]1053            return (QtGui.QValidator.Invalid, input, pos)
1054        return super(DoubleValidator, self).validate(input, pos)
1055
1056    def fixup(self, input):
1057        """
1058        Correct (remove) potential preexisting content
1059        """
[0261bc1]1060        super(DoubleValidator, self).fixup(input)
[d6b8a1d]1061        input = input.replace(",", "")
1062
[3b8cc00]1063def checkModel(path):
1064    """
1065    Check that the model save in file 'path' can run.
1066    """
[27689dc]1067    # The following return needs to be removed once
1068    # the unittest related changes in Sasmodels are commited
[c5e0d84]1069    # return True
[3b8cc00]1070    # try running the model
1071    from sasmodels.sasview_model import load_custom_model
1072    Model = load_custom_model(path)
1073    model = Model()
1074    q =  np.array([0.01, 0.1])
1075    _ = model.evalDistribution(q)
1076    qx, qy =  np.array([0.01, 0.01]), np.array([0.1, 0.1])
1077    _ = model.evalDistribution([qx, qy])
1078
1079    # check the model's unit tests run
1080    from sasmodels.model_test import run_one
1081    # TestSuite module in Qt5 now deletes tests in the suite after running,
1082    # so suite[0] in run_one() in sasmodels/model_test.py will contain [None] and
1083    # test.info.tests will raise.
1084    # Not sure how to change the behaviour here, most likely sasmodels will have to
1085    # be modified
1086    result = run_one(path)
1087
1088    return result
1089
[cb4d219]1090
[d4881f6a]1091def enum(*sequential, **named):
1092    """Create an enumeration object from a list of strings"""
1093    enums = dict(zip(sequential, range(len(sequential))), **named)
1094    return type('Enum', (), enums)
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