source: sasview/src/sas/qtgui/Utilities/GuiUtils.py @ 5d3af9f

ESS_GUIESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalc
Last change on this file since 5d3af9f was a54bbf2b, checked in by Piotr Rozyczko <rozyczko@…>, 6 years ago

Added plot roles to Data1D/Data2D structures to allow for smoother plot logic.

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File size: 36.3 KB
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[57be490]1# -*- coding: utf-8 -*-
[f721030]2"""
[28a84e9]3Global defaults and various utility functions usable by the general GUI
[f721030]4"""
5
6import os
[dc5ef15]7import re
[f721030]8import sys
9import imp
10import warnings
[f82ab8c]11import webbrowser
[b3e8629]12import urllib.parse
[f82ab8c]13
[3b8cc00]14import numpy as np
15
[f721030]16warnings.simplefilter("ignore")
17import logging
18
[4992ff2]19from PyQt5 import QtCore
20from PyQt5 import QtGui
21from PyQt5 import QtWidgets
[f721030]22
[e4676c8]23from periodictable import formula as Formula
[dc5ef15]24from sas.qtgui.Plotting import DataTransform
25from sas.qtgui.Plotting.ConvertUnits import convertUnit
26from sas.qtgui.Plotting.PlotterData import Data1D
27from sas.qtgui.Plotting.PlotterData import Data2D
[28a84e9]28from sas.sascalc.dataloader.loader import Loader
[dc5ef15]29from sas.qtgui.Utilities import CustomDir
[f721030]30
[fef38e8]31## TODO: CHANGE FOR SHIPPED PATH IN RELEASE
32if os.path.splitext(sys.argv[0])[1].lower() != ".py":
33        HELP_DIRECTORY_LOCATION = "doc"
34else:
35        HELP_DIRECTORY_LOCATION = "docs/sphinx-docs/build/html"
36IMAGES_DIRECTORY_LOCATION = HELP_DIRECTORY_LOCATION + "/_images"
[f721030]37
[fd7ef36]38# This matches the ID of a plot created using FittingLogic._create1DPlot, e.g.
39# "5 [P(Q)] modelname"
40# or
41# "4 modelname".
42# Useful for determining whether the plot in question is for an intermediate result, such as P(Q) or S(Q) in the
43# case of a product model; the identifier for this is held in square brackets, as in the example above.
44theory_plot_ID_pattern = re.compile(r"^([0-9]+)\s+(\[(.*)\]\s+)?(.*)$")
45
[f721030]46def get_app_dir():
47    """
48        The application directory is the one where the default custom_config.py
49        file resides.
50
51        :returns: app_path - the path to the applicatin directory
52    """
53    # First, try the directory of the executable we are running
54    app_path = sys.path[0]
55    if os.path.isfile(app_path):
56        app_path = os.path.dirname(app_path)
57    if os.path.isfile(os.path.join(app_path, "custom_config.py")):
58        app_path = os.path.abspath(app_path)
[31c5b58]59        #logging.info("Using application path: %s", app_path)
[f721030]60        return app_path
61
62    # Next, try the current working directory
63    if os.path.isfile(os.path.join(os.getcwd(), "custom_config.py")):
[31c5b58]64        #logging.info("Using application path: %s", os.getcwd())
[f721030]65        return os.path.abspath(os.getcwd())
66
67    # Finally, try the directory of the sasview module
68    # TODO: gui_manager will have to know about sasview until we
69    # clean all these module variables and put them into a config class
70    # that can be passed by sasview.py.
[6cb305a]71    # logging.info(sys.executable)
72    # logging.info(str(sys.argv))
[f721030]73    from sas import sasview as sasview
74    app_path = os.path.dirname(sasview.__file__)
[6cb305a]75    # logging.info("Using application path: %s", app_path)
[f721030]76    return app_path
77
78def get_user_directory():
79    """
80        Returns the user's home directory
81    """
82    userdir = os.path.join(os.path.expanduser("~"), ".sasview")
83    if not os.path.isdir(userdir):
84        os.makedirs(userdir)
85    return userdir
86
[481ff26]87def _find_local_config(confg_file, path):
[f721030]88    """
89        Find configuration file for the current application
90    """
91    config_module = None
92    fObj = None
93    try:
[481ff26]94        fObj, path_config, descr = imp.find_module(confg_file, [path])
95        config_module = imp.load_module(confg_file, fObj, path_config, descr)
[e540cd2]96    except ImportError:
[31c5b58]97        pass
98        #logging.error("Error loading %s/%s: %s" % (path, confg_file, sys.exc_value))
[83eb5208]99    except ValueError:
[b3e8629]100        print("Value error")
[83eb5208]101        pass
[f721030]102    finally:
103        if fObj is not None:
104            fObj.close()
[31c5b58]105    #logging.info("GuiManager loaded %s/%s" % (path, confg_file))
[f721030]106    return config_module
107
108
[3c8242c]109# Get APP folder
110PATH_APP = get_app_dir()
111DATAPATH = PATH_APP
[b0c5e8c]112
[3c8242c]113# Read in the local config, which can either be with the main
114# application or in the installation directory
115config = _find_local_config('local_config', PATH_APP)
116
117if config is None:
118    config = _find_local_config('local_config', os.getcwd())
119else:
120    pass
[f721030]121
[3c8242c]122c_conf_dir = CustomDir.setup_conf_dir(PATH_APP)
[83eb5208]123
[3c8242c]124custom_config = _find_local_config('custom_config', c_conf_dir)
125if custom_config is None:
126    custom_config = _find_local_config('custom_config', os.getcwd())
[f721030]127    if custom_config is None:
[3c8242c]128        msgConfig = "Custom_config file was not imported"
129
130#read some constants from config
131APPLICATION_STATE_EXTENSION = config.APPLICATION_STATE_EXTENSION
132APPLICATION_NAME = config.__appname__
133SPLASH_SCREEN_PATH = config.SPLASH_SCREEN_PATH
134WELCOME_PANEL_ON = config.WELCOME_PANEL_ON
135SPLASH_SCREEN_WIDTH = config.SPLASH_SCREEN_WIDTH
136SPLASH_SCREEN_HEIGHT = config.SPLASH_SCREEN_HEIGHT
137SS_MAX_DISPLAY_TIME = config.SS_MAX_DISPLAY_TIME
138if not WELCOME_PANEL_ON:
139    WELCOME_PANEL_SHOW = False
140else:
141    WELCOME_PANEL_SHOW = True
142try:
143    DATALOADER_SHOW = custom_config.DATALOADER_SHOW
144    TOOLBAR_SHOW = custom_config.TOOLBAR_SHOW
145    FIXED_PANEL = custom_config.FIXED_PANEL
146    if WELCOME_PANEL_ON:
147        WELCOME_PANEL_SHOW = custom_config.WELCOME_PANEL_SHOW
148    PLOPANEL_WIDTH = custom_config.PLOPANEL_WIDTH
149    DATAPANEL_WIDTH = custom_config.DATAPANEL_WIDTH
150    GUIFRAME_WIDTH = custom_config.GUIFRAME_WIDTH
151    GUIFRAME_HEIGHT = custom_config.GUIFRAME_HEIGHT
152    CONTROL_WIDTH = custom_config.CONTROL_WIDTH
153    CONTROL_HEIGHT = custom_config.CONTROL_HEIGHT
154    DEFAULT_PERSPECTIVE = custom_config.DEFAULT_PERSPECTIVE
155    CLEANUP_PLOT = custom_config.CLEANUP_PLOT
156    # custom open_path
157    open_folder = custom_config.DEFAULT_OPEN_FOLDER
[f0bb711]158    if open_folder is not None and os.path.isdir(open_folder):
[3c8242c]159        DEFAULT_OPEN_FOLDER = os.path.abspath(open_folder)
[f721030]160    else:
161        DEFAULT_OPEN_FOLDER = PATH_APP
[3c8242c]162except AttributeError:
163    DATALOADER_SHOW = True
164    TOOLBAR_SHOW = True
165    FIXED_PANEL = True
166    WELCOME_PANEL_SHOW = False
167    PLOPANEL_WIDTH = config.PLOPANEL_WIDTH
168    DATAPANEL_WIDTH = config.DATAPANEL_WIDTH
169    GUIFRAME_WIDTH = config.GUIFRAME_WIDTH
170    GUIFRAME_HEIGHT = config.GUIFRAME_HEIGHT
171    CONTROL_WIDTH = -1
172    CONTROL_HEIGHT = -1
173    DEFAULT_PERSPECTIVE = None
174    CLEANUP_PLOT = False
175    DEFAULT_OPEN_FOLDER = PATH_APP
176
177#DEFAULT_STYLE = config.DEFAULT_STYLE
178
179PLUGIN_STATE_EXTENSIONS = config.PLUGIN_STATE_EXTENSIONS
180OPEN_SAVE_MENU = config.OPEN_SAVE_PROJECT_MENU
181VIEW_MENU = config.VIEW_MENU
182EDIT_MENU = config.EDIT_MENU
183extension_list = []
184if APPLICATION_STATE_EXTENSION is not None:
185    extension_list.append(APPLICATION_STATE_EXTENSION)
186EXTENSIONS = PLUGIN_STATE_EXTENSIONS + extension_list
187try:
188    PLUGINS_WLIST = '|'.join(config.PLUGINS_WLIST)
189except AttributeError:
190    PLUGINS_WLIST = ''
191APPLICATION_WLIST = config.APPLICATION_WLIST
192IS_WIN = True
193IS_LINUX = False
194CLOSE_SHOW = True
195TIME_FACTOR = 2
196NOT_SO_GRAPH_LIST = ["BoxSum"]
[fef38e8]197
[f721030]198
199class Communicate(QtCore.QObject):
200    """
201    Utility class for tracking of the Qt signals
202    """
203    # File got successfully read
204    fileReadSignal = QtCore.pyqtSignal(list)
205
206    # Open File returns "list" of paths
207    fileDataReceivedSignal = QtCore.pyqtSignal(dict)
208
209    # Update Main window status bar with "str"
[f82ab8c]210    # Old "StatusEvent"
[f721030]211    statusBarUpdateSignal = QtCore.pyqtSignal(str)
212
213    # Send data to the current perspective
214    updatePerspectiveWithDataSignal = QtCore.pyqtSignal(list)
[5032ea68]215
216    # New data in current perspective
[a281ab8]217    updateModelFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem)
218
[5236449]219    # New theory data in current perspective
220    updateTheoryFromPerspectiveSignal = QtCore.pyqtSignal(QtGui.QStandardItem)
221
[fd7ef36]222    # Request to delete plots (in the theory view) related to a given model ID
223    deleteIntermediateTheoryPlotsSignal = QtCore.pyqtSignal(str)
224
[f82ab8c]225    # New plot requested from the GUI manager
226    # Old "NewPlotEvent"
[5b144c6]227    plotRequestedSignal = QtCore.pyqtSignal(list, int)
[f82ab8c]228
[3b3b40b]229    # Plot from file names
230    plotFromFilenameSignal = QtCore.pyqtSignal(str)
231
[7d077d1]232    # Plot update requested from a perspective
233    plotUpdateSignal = QtCore.pyqtSignal(list)
234
[e540cd2]235    # Progress bar update value
236    progressBarUpdateSignal = QtCore.pyqtSignal(int)
237
[8cb6cd6]238    # Workspace charts added/removed
239    activeGraphsSignal = QtCore.pyqtSignal(list)
240
[27313b7]241    # Current workspace chart's name changed
242    activeGraphName = QtCore.pyqtSignal(tuple)
243
[83d6249]244    # Current perspective changed
245    perspectiveChangedSignal = QtCore.pyqtSignal(str)
246
[38eb433]247    # File/dataset got deleted
248    dataDeletedSignal = QtCore.pyqtSignal(list)
249
[d5c5d3d]250    # Send data to Data Operation Utility panel
[f0bb711]251    sendDataToPanelSignal = QtCore.pyqtSignal(dict)
[d5c5d3d]252
253    # Send result of Data Operation Utility panel to Data Explorer
254    updateModelFromDataOperationPanelSignal = QtCore.pyqtSignal(QtGui.QStandardItem, dict)
[f82ab8c]255
[3b3b40b]256    # Notify about a new custom plugin being written/deleted/modified
257    customModelDirectoryChanged = QtCore.pyqtSignal()
258
[d4dac80]259    # Notify the gui manager about new data to be added to the grid view
260    sendDataToGridSignal = QtCore.pyqtSignal(list)
261
[57be490]262    # Action Save Analysis triggered
263    saveAnalysisSignal = QtCore.pyqtSignal()
[d4dac80]264
[e20870bc]265    # Mask Editor requested
266    maskEditorSignal = QtCore.pyqtSignal(Data2D)
267
[339e22b]268    #second Mask Editor for external
269    extMaskEditorSignal = QtCore.pyqtSignal()
270
[8e2cd79]271    # Fitting parameter copy to clipboard
272    copyFitParamsSignal = QtCore.pyqtSignal(str)
273
274    # Fitting parameter paste from clipboard
275    pasteFitParamsSignal = QtCore.pyqtSignal()
[0eff615]276
[3d18691]277    # Notify about new categories/models from category manager
278    updateModelCategoriesSignal = QtCore.pyqtSignal()
[8e2cd79]279
[5d28d6b]280    # Tell the data explorer to switch tabs
281    changeDataExplorerTabSignal = QtCore.pyqtSignal(int)
282
[8548d739]283def updateModelItemWithPlot(item, update_data, name=""):
[a281ab8]284    """
[1042dba]285    Adds a checkboxed row named "name" to QStandardItem
[cee5c78]286    Adds 'update_data' to that row.
[a281ab8]287    """
[e540cd2]288    assert isinstance(item, QtGui.QStandardItem)
[3bdbfcc]289
290    # Check if data with the same ID is already present
291    for index in range(item.rowCount()):
292        plot_item = item.child(index)
[5b144c6]293        if not plot_item.isCheckable():
294            continue
295        plot_data = plot_item.child(0).data()
296        if plot_data.id is not None and \
297                plot_data.name == update_data.name:
298                #(plot_data.name == update_data.name or plot_data.id == update_data.id):
[6cb305a]299            # if plot_data.id is not None and plot_data.id == update_data.id:
[5b144c6]300            # replace data section in item
301            plot_item.child(0).setData(update_data)
302            plot_item.setText(name)
303            # Plot title if any
304            if plot_item.child(1).hasChildren():
305                plot_item.child(1).child(0).setText("Title: %s"%name)
306            # Force redisplay
307            return
[a281ab8]308
[5236449]309    # Create the new item
310    checkbox_item = createModelItemWithPlot(update_data, name)
311
312    # Append the new row to the main item
313    item.appendRow(checkbox_item)
314
[0fe7e5b]315def deleteRedundantPlots(item, new_plots):
316    """
317    Checks all plots that are children of the given item; if any have an ID or name not included in new_plots,
318    it is deleted. Useful for e.g. switching from P(Q)S(Q) to P(Q); this would remove the old S(Q) plot.
319
320    Ensure that new_plots contains ALL the relevant plots(!!!)
321    """
322    assert isinstance(item, QtGui.QStandardItem)
323
[a54bbf2b]324    # lists of plots names/ids for all deletable plots on item
[0fe7e5b]325    names = [p.name for p in new_plots if p.name is not None]
326    ids = [p.id for p in new_plots if p.id is not None]
327
328    items_to_delete = []
329
330    for index in range(item.rowCount()):
331        plot_item = item.child(index)
[a54bbf2b]332        if not plot_item.isCheckable():
333            continue
334        plot_data = plot_item.child(0).data()
335        if (plot_data.id is not None) and \
336            (plot_data.id not in ids) and \
337            (plot_data.name not in names) and \
338            (plot_data.plot_role == Data1D.ROLE_DELETABLE):
339            items_to_delete.append(plot_item)
[0fe7e5b]340
341    for plot_item in items_to_delete:
342        item.removeRow(plot_item.row())
343
[6a3e1fe]344class HashableStandardItem(QtGui.QStandardItem):
345    """
346    Subclassed standard item with reimplemented __hash__
347    to allow for use as an index.
348    """
349    def __init__(self, parent=None):
[0261bc1]350        super(HashableStandardItem, self).__init__()
[6a3e1fe]351
352    def __hash__(self):
353        ''' just a random hash value '''
354        #return hash(self.__init__)
355        return 0
356
[0261bc1]357    def clone(self):
358        ''' Assure __hash__ is cloned as well'''
359        clone = super(HashableStandardItem, self).clone()
360        clone.__hash__ = self.__hash__
361        return clone
362
[3933ee9]363def getMonospaceFont():
364    """Convenience function; returns a monospace font to be used in any shells, code editors, etc."""
365
366    # Note: Consolas is only available on Windows; the style hint is used on other operating systems
367    font = QtGui.QFont("Consolas", 10)
368    font.setStyleHint(QtGui.QFont.Monospace, QtGui.QFont.PreferQuality)
369    return font
370
[5236449]371def createModelItemWithPlot(update_data, name=""):
372    """
373    Creates a checkboxed QStandardItem named "name"
[cee5c78]374    Adds 'update_data' to that row.
[5236449]375    """
[b3e8629]376    py_update_data = update_data
[5236449]377
[6a3e1fe]378    checkbox_item = HashableStandardItem()
[a281ab8]379    checkbox_item.setCheckable(True)
380    checkbox_item.setCheckState(QtCore.Qt.Checked)
381    checkbox_item.setText(name)
382
383    # Add "Info" item
[5236449]384    if isinstance(py_update_data, (Data1D, Data2D)):
[1042dba]385        # If Data1/2D added - extract Info from it
386        info_item = infoFromData(py_update_data)
387    else:
388        # otherwise just add a naked item
[481ff26]389        info_item = QtGui.QStandardItem("Info")
[a281ab8]390
391    # Add the actual Data1D/Data2D object
392    object_item = QtGui.QStandardItem()
393    object_item.setData(update_data)
394
[1042dba]395    # Set the data object as the first child
[a281ab8]396    checkbox_item.setChild(0, object_item)
397
[1042dba]398    # Set info_item as the second child
[a281ab8]399    checkbox_item.setChild(1, info_item)
400
[5236449]401    # And return the newly created item
402    return checkbox_item
[1042dba]403
[8548d739]404def updateModelItem(item, update_data, name=""):
405    """
406    Adds a simple named child to QStandardItem
407    """
408    assert isinstance(item, QtGui.QStandardItem)
409
410    # Add the actual Data1D/Data2D object
411    object_item = QtGui.QStandardItem()
412    object_item.setText(name)
[b3e8629]413    object_item.setData(update_data)
[8548d739]414
415    # Append the new row to the main item
416    item.appendRow(object_item)
417
[f1f3e6a]418def updateModelItemStatus(model_item, filename="", name="", status=2):
419    """
420    Update status of checkbox related to high- and low-Q extrapolation
421    choice in Invariant Panel
422    """
423    assert isinstance(model_item, QtGui.QStandardItemModel)
424
425    # Iterate over model looking for items with checkboxes
426    for index in range(model_item.rowCount()):
427        item = model_item.item(index)
[6cb305a]428        if item.text() == filename and item.isCheckable() \
429                and item.checkState() == QtCore.Qt.Checked:
[f1f3e6a]430            # Going 1 level deeper only
431            for index_2 in range(item.rowCount()):
432                item_2 = item.child(index_2)
433                if item_2 and item_2.isCheckable() and item_2.text() == name:
434                    item_2.setCheckState(status)
435
436    return
437
[88e1f57]438def itemFromFilename(filename, model_item):
439    """
440    Returns the model item text=filename in the model
441    """
442    assert isinstance(model_item, QtGui.QStandardItemModel)
[b3e8629]443    assert isinstance(filename, str)
[88e1f57]444
445    # Iterate over model looking for named items
[6cb305a]446    item = list([i for i in [model_item.item(index)
447                             for index in range(model_item.rowCount())]
448                 if str(i.text()) == filename])
[88e1f57]449    return item[0] if len(item)>0 else None
450
[57be490]451def plotsFromModel(model_name, model_item):
452    """
453    Returns the list of plots for the item with model name in the model
454    """
455    assert isinstance(model_item, QtGui.QStandardItem)
456    assert isinstance(model_name, str)
457
458    plot_data = []
459    # Iterate over model looking for named items
460    for index in range(model_item.rowCount()):
461        item = model_item.child(index)
462        if isinstance(item.data(), (Data1D, Data2D)):
463            plot_data.append(item.data())
464        if model_name in str(item.text()):
465            #plot_data.append(item.child(0).data())
466            # Going 1 level deeper only
467            for index_2 in range(item.rowCount()):
468                item_2 = item.child(index_2)
469                if item_2 and isinstance(item_2.data(), (Data1D, Data2D)):
470                    plot_data.append(item_2.data())
471
472    return plot_data
473
[d48cc19]474def plotsFromFilename(filename, model_item):
475    """
476    Returns the list of plots for the item with text=filename in the model
477    """
478    assert isinstance(model_item, QtGui.QStandardItemModel)
[b3e8629]479    assert isinstance(filename, str)
[d48cc19]480
[6ff103a]481    plot_data = {}
[d48cc19]482    # Iterate over model looking for named items
483    for index in range(model_item.rowCount()):
484        item = model_item.item(index)
[685e0e3]485        if filename in str(item.text()):
[d48cc19]486            # TODO: assure item type is correct (either data1/2D or Plotter)
[6ff103a]487            plot_data[item] = item.child(0).data()
[56b22f9]488            # Going 1 level deeper only
489            for index_2 in range(item.rowCount()):
490                item_2 = item.child(index_2)
491                if item_2 and item_2.isCheckable():
492                    # TODO: assure item type is correct (either data1/2D or Plotter)
[6ff103a]493                    plot_data[item_2] = item_2.child(0).data()
[d48cc19]494
495    return plot_data
[8548d739]496
[1042dba]497def plotsFromCheckedItems(model_item):
498    """
499    Returns the list of plots for items in the model which are checked
500    """
[e540cd2]501    assert isinstance(model_item, QtGui.QStandardItemModel)
[1042dba]502
503    plot_data = []
504    # Iterate over model looking for items with checkboxes
[9e426c1]505    for index in range(model_item.rowCount()):
506        item = model_item.item(index)
[6cb305a]507
[9e426c1]508        # Going 1 level deeper only
509        for index_2 in range(item.rowCount()):
510            item_2 = item.child(index_2)
511            if item_2 and item_2.isCheckable() and item_2.checkState() == QtCore.Qt.Checked:
512                # TODO: assure item type is correct (either data1/2D or Plotter)
[fbfc488]513                plot_data.append((item_2, item_2.child(0).data()))
[481ff26]514
[6cb305a]515        if item.isCheckable() and item.checkState() == QtCore.Qt.Checked:
516            # TODO: assure item type is correct (either data1/2D or Plotter)
517            plot_data.append((item, item.child(0).data()))
518
[9e426c1]519    return plot_data
520
521def infoFromData(data):
522    """
523    Given Data1D/Data2D object, extract relevant Info elements
524    and add them to a model item
525    """
[e540cd2]526    assert isinstance(data, (Data1D, Data2D))
[9e426c1]527
[1042dba]528    info_item = QtGui.QStandardItem("Info")
[9e426c1]529
[481ff26]530    title_item = QtGui.QStandardItem("Title: " + data.title)
[1042dba]531    info_item.appendRow(title_item)
[481ff26]532    run_item = QtGui.QStandardItem("Run: " + str(data.run))
[1042dba]533    info_item.appendRow(run_item)
[481ff26]534    type_item = QtGui.QStandardItem("Type: " + str(data.__class__.__name__))
[1042dba]535    info_item.appendRow(type_item)
536
537    if data.path:
[481ff26]538        path_item = QtGui.QStandardItem("Path: " + data.path)
[1042dba]539        info_item.appendRow(path_item)
540
541    if data.instrument:
[481ff26]542        instr_item = QtGui.QStandardItem("Instrument: " + data.instrument)
[1042dba]543        info_item.appendRow(instr_item)
544
545    process_item = QtGui.QStandardItem("Process")
546    if isinstance(data.process, list) and data.process:
547        for process in data.process:
548            process_date = process.date
549            process_date_item = QtGui.QStandardItem("Date: " + process_date)
550            process_item.appendRow(process_date_item)
551
552            process_descr = process.description
553            process_descr_item = QtGui.QStandardItem("Description: " + process_descr)
554            process_item.appendRow(process_descr_item)
555
556            process_name = process.name
557            process_name_item = QtGui.QStandardItem("Name: " + process_name)
558            process_item.appendRow(process_name_item)
559
560    info_item.appendRow(process_item)
[9e426c1]561
562    return info_item
563
[d4dac80]564def dataFromItem(item):
565    """
566    Retrieve Data1D/2D component from QStandardItem.
567    The assumption - data stored in SasView standard, in child 0
568    """
569    return item.child(0).data()
570
[f82ab8c]571def openLink(url):
572    """
573    Open a URL in an external browser.
574    Check the URL first, though.
575    """
[b3e8629]576    parsed_url = urllib.parse.urlparse(url)
[f82ab8c]577    if parsed_url.scheme:
578        webbrowser.open(url)
579    else:
580        msg = "Attempt at opening an invalid URL"
[b3e8629]581        raise AttributeError(msg)
[4b71e91]582
583def retrieveData1d(data):
584    """
585    Retrieve 1D data from file and construct its text
586    representation
587    """
[28a84e9]588    if not isinstance(data, Data1D):
589        msg = "Incorrect type passed to retrieveData1d"
[b3e8629]590        raise AttributeError(msg)
[4b71e91]591    try:
592        xmin = min(data.x)
593        ymin = min(data.y)
594    except:
595        msg = "Unable to find min/max of \n data named %s" % \
596                    data.filename
[31c5b58]597        #logging.error(msg)
[b3e8629]598        raise ValueError(msg)
[4b71e91]599
600    text = data.__str__()
601    text += 'Data Min Max:\n'
602    text += 'X_min = %s:  X_max = %s\n' % (xmin, max(data.x))
603    text += 'Y_min = %s:  Y_max = %s\n' % (ymin, max(data.y))
[d5c5d3d]604    if data.dy is not None:
[4b71e91]605        text += 'dY_min = %s:  dY_max = %s\n' % (min(data.dy), max(data.dy))
606    text += '\nData Points:\n'
607    x_st = "X"
608    for index in range(len(data.x)):
[d5c5d3d]609        if data.dy is not None and len(data.dy) > index:
[4b71e91]610            dy_val = data.dy[index]
611        else:
612            dy_val = 0.0
[d5c5d3d]613        if data.dx is not None and len(data.dx) > index:
[4b71e91]614            dx_val = data.dx[index]
615        else:
616            dx_val = 0.0
[d5c5d3d]617        if data.dxl is not None and len(data.dxl) > index:
[4b71e91]618            if index == 0:
619                x_st = "Xl"
620            dx_val = data.dxl[index]
[d5c5d3d]621        elif data.dxw is not None and len(data.dxw) > index:
[4b71e91]622            if index == 0:
623                x_st = "Xw"
624            dx_val = data.dxw[index]
625
626        if index == 0:
627            text += "<index> \t<X> \t<Y> \t<dY> \t<d%s>\n" % x_st
628        text += "%s \t%s \t%s \t%s \t%s\n" % (index,
629                                                data.x[index],
630                                                data.y[index],
631                                                dy_val,
632                                                dx_val)
633    return text
634
635def retrieveData2d(data):
636    """
[39551a68]637    Retrieve 2D data from file and construct its text
[4b71e91]638    representation
639    """
[39551a68]640    if not isinstance(data, Data2D):
641        msg = "Incorrect type passed to retrieveData2d"
[b3e8629]642        raise AttributeError(msg)
[39551a68]643
[4b71e91]644    text = data.__str__()
645    text += 'Data Min Max:\n'
646    text += 'I_min = %s\n' % min(data.data)
647    text += 'I_max = %s\n\n' % max(data.data)
648    text += 'Data (First 2501) Points:\n'
649    text += 'Data columns include err(I).\n'
650    text += 'ASCII data starts here.\n'
651    text += "<index> \t<Qx> \t<Qy> \t<I> \t<dI> \t<dQparal> \t<dQperp>\n"
652    di_val = 0.0
653    dx_val = 0.0
654    dy_val = 0.0
655    len_data = len(data.qx_data)
[b3e8629]656    for index in range(0, len_data):
[4b71e91]657        x_val = data.qx_data[index]
658        y_val = data.qy_data[index]
659        i_val = data.data[index]
[d5c5d3d]660        if data.err_data is not None:
[4b71e91]661            di_val = data.err_data[index]
[d5c5d3d]662        if data.dqx_data is not None:
[4b71e91]663            dx_val = data.dqx_data[index]
[d5c5d3d]664        if data.dqy_data is not None:
[4b71e91]665            dy_val = data.dqy_data[index]
666
667        text += "%s \t%s \t%s \t%s \t%s \t%s \t%s\n" % (index,
668                                                        x_val,
669                                                        y_val,
670                                                        i_val,
671                                                        di_val,
672                                                        dx_val,
673                                                        dy_val)
674        # Takes too long time for typical data2d: Break here
675        if index >= 2500:
676            text += ".............\n"
677            break
678
679    return text
[28a84e9]680
[39551a68]681def onTXTSave(data, path):
[28a84e9]682    """
683    Save file as formatted txt
684    """
685    with open(path,'w') as out:
686        has_errors = True
[0261bc1]687        if data.dy is None or not data.dy.any():
[28a84e9]688            has_errors = False
689        # Sanity check
690        if has_errors:
691            try:
692                if len(data.y) != len(data.dy):
693                    has_errors = False
694            except:
695                has_errors = False
696        if has_errors:
[0261bc1]697            if data.dx is not None and data.dx.any():
[28a84e9]698                out.write("<X>   <Y>   <dY>   <dX>\n")
699            else:
700                out.write("<X>   <Y>   <dY>\n")
701        else:
702            out.write("<X>   <Y>\n")
703
704        for i in range(len(data.x)):
705            if has_errors:
[0261bc1]706                if data.dx is not None and data.dx.any():
[cee5c78]707                    if  data.dx[i] is not None:
[28a84e9]708                        out.write("%g  %g  %g  %g\n" % (data.x[i],
709                                                        data.y[i],
710                                                        data.dy[i],
711                                                        data.dx[i]))
712                    else:
713                        out.write("%g  %g  %g\n" % (data.x[i],
714                                                    data.y[i],
715                                                    data.dy[i]))
716                else:
717                    out.write("%g  %g  %g\n" % (data.x[i],
718                                                data.y[i],
719                                                data.dy[i]))
720            else:
721                out.write("%g  %g\n" % (data.x[i],
722                                        data.y[i]))
723
724def saveData1D(data):
725    """
726    Save 1D data points
727    """
728    default_name = os.path.basename(data.filename)
729    default_name, extension = os.path.splitext(default_name)
[e694f0f]730    if not extension:
731        extension = ".txt"
[28a84e9]732    default_name += "_out" + extension
733
734    wildcard = "Text files (*.txt);;"\
735                "CanSAS 1D files(*.xml)"
736    kwargs = {
737        'caption'   : 'Save As',
738        'directory' : default_name,
739        'filter'    : wildcard,
740        'parent'    : None,
741    }
742    # Query user for filename.
[d6b8a1d]743    filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs)
744    filename = filename_tuple[0]
[28a84e9]745
746    # User cancelled.
747    if not filename:
748        return
749
750    #Instantiate a loader
751    loader = Loader()
752    if os.path.splitext(filename)[1].lower() == ".txt":
[39551a68]753        onTXTSave(data, filename)
[28a84e9]754    if os.path.splitext(filename)[1].lower() == ".xml":
755        loader.save(filename, data, ".xml")
756
757def saveData2D(data):
758    """
759    Save data2d dialog
760    """
761    default_name = os.path.basename(data.filename)
762    default_name, _ = os.path.splitext(default_name)
763    ext_format = ".dat"
764    default_name += "_out" + ext_format
765
766    wildcard = "IGOR/DAT 2D file in Q_map (*.dat)"
767    kwargs = {
768        'caption'   : 'Save As',
769        'directory' : default_name,
770        'filter'    : wildcard,
771        'parent'    : None,
772    }
773    # Query user for filename.
[d6b8a1d]774    filename_tuple = QtWidgets.QFileDialog.getSaveFileName(**kwargs)
775    filename = filename_tuple[0]
[28a84e9]776
777    # User cancelled.
778    if not filename:
779        return
[d6b8a1d]780
[28a84e9]781    #Instantiate a loader
782    loader = Loader()
783
784    if os.path.splitext(filename)[1].lower() == ext_format:
785        loader.save(filename, data, ext_format)
[e4676c8]786
787class FormulaValidator(QtGui.QValidator):
788    def __init__(self, parent=None):
789        super(FormulaValidator, self).__init__(parent)
790 
791    def validate(self, input, pos):
792
[fbfc488]793        self._setStyleSheet("")
794        return QtGui.QValidator.Acceptable, pos
795
796        #try:
797        #    Formula(str(input))
798        #    self._setStyleSheet("")
799        #    return QtGui.QValidator.Acceptable, pos
800
801        #except Exception as e:
802        #    self._setStyleSheet("background-color:pink;")
803        #    return QtGui.QValidator.Intermediate, pos
[e4676c8]804
805    def _setStyleSheet(self, value):
806        try:
807            if self.parent():
808                self.parent().setStyleSheet(value)
809        except:
810            pass
[8548d739]811
[aadf0af1]812def xyTransform(data, xLabel="", yLabel=""):
813    """
814    Transforms x and y in View and set the scale
815    """
816    # Changing the scale might be incompatible with
817    # currently displayed data (for instance, going
818    # from ln to log when all plotted values have
819    # negative natural logs).
820    # Go linear and only change the scale at the end.
821    xscale = 'linear'
822    yscale = 'linear'
823    # Local data is either 1D or 2D
824    if data.id == 'fit':
825        return
826
[bb57068]827    # make sure we have some function to operate on
828    if xLabel is None:
829        xLabel = 'log10(x)'
830    if yLabel is None:
831        yLabel = 'log10(y)'
832
[aadf0af1]833    # control axis labels from the panel itself
834    yname, yunits = data.get_yaxis()
835    xname, xunits = data.get_xaxis()
836
837    # Goes through all possible scales
838    # self.x_label is already wrapped with Latex "$", so using the argument
839
840    # X
841    if xLabel == "x":
[dc5ef15]842        data.transformX(DataTransform.toX, DataTransform.errToX)
[aadf0af1]843        xLabel = "%s(%s)" % (xname, xunits)
844    if xLabel == "x^(2)":
[dc5ef15]845        data.transformX(DataTransform.toX2, DataTransform.errToX2)
846        xunits = convertUnit(2, xunits)
[aadf0af1]847        xLabel = "%s^{2}(%s)" % (xname, xunits)
848    if xLabel == "x^(4)":
[dc5ef15]849        data.transformX(DataTransform.toX4, DataTransform.errToX4)
850        xunits = convertUnit(4, xunits)
[aadf0af1]851        xLabel = "%s^{4}(%s)" % (xname, xunits)
852    if xLabel == "ln(x)":
[dc5ef15]853        data.transformX(DataTransform.toLogX, DataTransform.errToLogX)
[aadf0af1]854        xLabel = "\ln{(%s)}(%s)" % (xname, xunits)
855    if xLabel == "log10(x)":
[dc5ef15]856        data.transformX(DataTransform.toX_pos, DataTransform.errToX_pos)
[aadf0af1]857        xscale = 'log'
858        xLabel = "%s(%s)" % (xname, xunits)
859    if xLabel == "log10(x^(4))":
[dc5ef15]860        data.transformX(DataTransform.toX4, DataTransform.errToX4)
861        xunits = convertUnit(4, xunits)
[aadf0af1]862        xLabel = "%s^{4}(%s)" % (xname, xunits)
863        xscale = 'log'
864
865    # Y
866    if yLabel == "ln(y)":
[dc5ef15]867        data.transformY(DataTransform.toLogX, DataTransform.errToLogX)
[aadf0af1]868        yLabel = "\ln{(%s)}(%s)" % (yname, yunits)
869    if yLabel == "y":
[dc5ef15]870        data.transformY(DataTransform.toX, DataTransform.errToX)
[aadf0af1]871        yLabel = "%s(%s)" % (yname, yunits)
872    if yLabel == "log10(y)":
[dc5ef15]873        data.transformY(DataTransform.toX_pos, DataTransform.errToX_pos)
[aadf0af1]874        yscale = 'log'
875        yLabel = "%s(%s)" % (yname, yunits)
876    if yLabel == "y^(2)":
[dc5ef15]877        data.transformY(DataTransform.toX2, DataTransform.errToX2)
878        yunits = convertUnit(2, yunits)
[aadf0af1]879        yLabel = "%s^{2}(%s)" % (yname, yunits)
880    if yLabel == "1/y":
[dc5ef15]881        data.transformY(DataTransform.toOneOverX, DataTransform.errOneOverX)
882        yunits = convertUnit(-1, yunits)
[aadf0af1]883        yLabel = "1/%s(%s)" % (yname, yunits)
884    if yLabel == "y*x^(2)":
[dc5ef15]885        data.transformY(DataTransform.toYX2, DataTransform.errToYX2)
886        xunits = convertUnit(2, xunits)
[aadf0af1]887        yLabel = "%s \ \ %s^{2}(%s%s)" % (yname, xname, yunits, xunits)
888    if yLabel == "y*x^(4)":
[dc5ef15]889        data.transformY(DataTransform.toYX4, DataTransform.errToYX4)
890        xunits = convertUnit(4, xunits)
[aadf0af1]891        yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits)
892    if yLabel == "1/sqrt(y)":
[dc5ef15]893        data.transformY(DataTransform.toOneOverSqrtX, DataTransform.errOneOverSqrtX)
894        yunits = convertUnit(-0.5, yunits)
[aadf0af1]895        yLabel = "1/\sqrt{%s}(%s)" % (yname, yunits)
896    if yLabel == "ln(y*x)":
[dc5ef15]897        data.transformY(DataTransform.toLogXY, DataTransform.errToLogXY)
[aadf0af1]898        yLabel = "\ln{(%s \ \ %s)}(%s%s)" % (yname, xname, yunits, xunits)
899    if yLabel == "ln(y*x^(2))":
[dc5ef15]900        data.transformY(DataTransform.toLogYX2, DataTransform.errToLogYX2)
901        xunits = convertUnit(2, xunits)
[aadf0af1]902        yLabel = "\ln (%s \ \ %s^{2})(%s%s)" % (yname, xname, yunits, xunits)
903    if yLabel == "ln(y*x^(4))":
[dc5ef15]904        data.transformY(DataTransform.toLogYX4, DataTransform.errToLogYX4)
905        xunits = convertUnit(4, xunits)
[aadf0af1]906        yLabel = "\ln (%s \ \ %s^{4})(%s%s)" % (yname, xname, yunits, xunits)
907    if yLabel == "log10(y*x^(4))":
[dc5ef15]908        data.transformY(DataTransform.toYX4, DataTransform.errToYX4)
909        xunits = convertUnit(4, xunits)
[aadf0af1]910        yscale = 'log'
911        yLabel = "%s \ \ %s^{4}(%s%s)" % (yname, xname, yunits, xunits)
912
913    # Perform the transformation of data in data1d->View
914    data.transformView()
915
916    return (xLabel, yLabel, xscale, yscale)
917
[570a58f9]918def formatNumber(value, high=False):
919    """
920    Return a float in a standardized, human-readable formatted string.
921    This is used to output readable (e.g. x.xxxe-y) values to the panel.
922    """
923    try:
924        value = float(value)
925    except:
926        output = "NaN"
927        return output.lstrip().rstrip()
928
929    if high:
[f7f5796]930        output = "%-7.5g" % value
[570a58f9]931
932    else:
933        output = "%-5.3g" % value
934    return output.lstrip().rstrip()
[ad6b4e2]935
[57be490]936def replaceHTMLwithUTF8(html):
937    """
938    Replace some important HTML-encoded characters
939    with their UTF-8 equivalents
940    """
941    # Angstrom
942    html_out = html.replace("&#x212B;", "Å")
943    # infinity
944    html_out = html_out.replace("&#x221e;", "∞")
945    # +/-
946    html_out = html_out.replace("&#177;", "±")
947
948    return html_out
949
950def replaceHTMLwithASCII(html):
951    """
952    Replace some important HTML-encoded characters
953    with their ASCII equivalents
954    """
955    # Angstrom
956    html_out = html.replace("&#x212B;", "Ang")
957    # infinity
958    html_out = html_out.replace("&#x221e;", "inf")
959    # +/-
960    html_out = html_out.replace("&#177;", "+/-")
961
962    return html_out
963
964def convertUnitToUTF8(unit):
965    """
966    Convert ASCII unit display into UTF-8 symbol
967    """
968    if unit == "1/A":
969        return "Å<sup>-1</sup>"
970    elif unit == "1/cm":
971        return "cm<sup>-1</sup>"
972    elif unit == "Ang":
973        return "Å"
974    elif unit == "1e-6/Ang^2":
975        return "10<sup>-6</sup>/Å<sup>2</sup>"
976    elif unit == "inf":
977        return "∞"
978    elif unit == "-inf":
979        return "-∞"
980    else:
981        return unit
982
[ad6b4e2]983def convertUnitToHTML(unit):
984    """
985    Convert ASCII unit display into well rendering HTML
986    """
987    if unit == "1/A":
988        return "&#x212B;<sup>-1</sup>"
989    elif unit == "1/cm":
990        return "cm<sup>-1</sup>"
991    elif unit == "Ang":
992        return "&#x212B;"
993    elif unit == "1e-6/Ang^2":
994        return "10<sup>-6</sup>/&#x212B;<sup>2</sup>"
995    elif unit == "inf":
996        return "&#x221e;"
997    elif unit == "-inf":
998        return "-&#x221e;"
999    else:
1000        return unit
[dc5ef15]1001
1002def parseName(name, expression):
1003    """
1004    remove "_" in front of a name
1005    """
1006    if re.match(expression, name) is not None:
1007        word = re.split(expression, name, 1)
1008        for item in word:           
1009            if item.lstrip().rstrip() != '':
1010                return item
1011    else:
1012        return name
[fbfc488]1013
1014def toDouble(value_string):
1015    """
1016    toFloat conversion which cares deeply about user's locale
1017    """
1018    # Holy shit this escalated quickly in Qt5.
1019    # No more float() cast on general locales.
1020    value = QtCore.QLocale().toFloat(value_string)
1021    if value[1]:
1022        return value[0]
1023
1024    # Try generic locale
1025    value = QtCore.QLocale(QtCore.QLocale('en_US')).toFloat(value_string)
1026    if value[1]:
1027        return value[0]
1028    else:
[0261bc1]1029        raise TypeError
[d6b8a1d]1030
[3b3b40b]1031def findNextFilename(filename, directory):
1032    """
1033    Finds the next available (non-existing) name for 'filename' in 'directory'.
1034    plugin.py -> plugin (n).py  - for first 'n' for which the file doesn't exist
1035    """
1036    basename, ext = os.path.splitext(filename)
1037    # limit the number of copies
1038    MAX_FILENAMES = 1000
1039    # Start with (1)
1040    number_ext = 1
1041    proposed_filename = ""
1042    found_filename = False
1043    # Find the next available filename or exit if too many copies
1044    while not found_filename or number_ext > MAX_FILENAMES:
1045        proposed_filename = basename + " ("+str(number_ext)+")" + ext
1046        if os.path.exists(os.path.join(directory, proposed_filename)):
1047            number_ext += 1
1048        else:
1049            found_filename = True
1050
1051    return proposed_filename
1052
1053
[d6b8a1d]1054class DoubleValidator(QtGui.QDoubleValidator):
1055    """
1056    Allow only dots as decimal separator
1057    """
1058    def validate(self, input, pos):
1059        """
1060        Return invalid for commas
1061        """
[0261bc1]1062        if input is not None and ',' in input:
[d6b8a1d]1063            return (QtGui.QValidator.Invalid, input, pos)
1064        return super(DoubleValidator, self).validate(input, pos)
1065
1066    def fixup(self, input):
1067        """
1068        Correct (remove) potential preexisting content
1069        """
[0261bc1]1070        super(DoubleValidator, self).fixup(input)
[d6b8a1d]1071        input = input.replace(",", "")
1072
[3b8cc00]1073def checkModel(path):
1074    """
1075    Check that the model save in file 'path' can run.
1076    """
[27689dc]1077    # The following return needs to be removed once
1078    # the unittest related changes in Sasmodels are commited
[c5e0d84]1079    # return True
[3b8cc00]1080    # try running the model
1081    from sasmodels.sasview_model import load_custom_model
1082    Model = load_custom_model(path)
1083    model = Model()
1084    q =  np.array([0.01, 0.1])
1085    _ = model.evalDistribution(q)
1086    qx, qy =  np.array([0.01, 0.01]), np.array([0.1, 0.1])
1087    _ = model.evalDistribution([qx, qy])
1088
1089    # check the model's unit tests run
1090    from sasmodels.model_test import run_one
1091    # TestSuite module in Qt5 now deletes tests in the suite after running,
1092    # so suite[0] in run_one() in sasmodels/model_test.py will contain [None] and
1093    # test.info.tests will raise.
1094    # Not sure how to change the behaviour here, most likely sasmodels will have to
1095    # be modified
1096    result = run_one(path)
1097
1098    return result
1099
[cb4d219]1100
[d4881f6a]1101def enum(*sequential, **named):
1102    """Create an enumeration object from a list of strings"""
1103    enums = dict(zip(sequential, range(len(sequential))), **named)
1104    return type('Enum', (), enums)
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