PlotterData.py @ c6fb57c

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalc

Last change on this file since c6fb57c was cee5c78, checked in by Piotr Rozyczko <rozyczko@…>, 7 years ago
Converted more syntax not covered by 2to3
Property mode set to `100644`
File size: 12.7 KB

Rev	Line
[fef38e8]	1	"""
	2	Adapters for fitting module
	3	"""
	4	import copy
	5	import numpy
	6	import math
	7	from sas.sascalc.data_util.uncertainty import Uncertainty
	8
	9	from sas.qtgui.Plotting.Plottables import PlottableData1D
	10	from sas.qtgui.Plotting.Plottables import PlottableData2D
	11
	12	from sas.sascalc.dataloader.data_info import Data1D as LoadData1D
	13	from sas.sascalc.dataloader.data_info import Data2D as LoadData2D
	14
	15
	16	class Data1D(PlottableData1D, LoadData1D):
	17	"""
	18	"""
	19	def __init__(self, x=None, y=None, dx=None, dy=None):
	20	"""
	21	"""
	22	if x is None:
	23	x = []
	24	if y is None:
	25	y = []
	26	PlottableData1D.__init__(self, x, y, dx, dy)
	27	LoadData1D.__init__(self, x, y, dx, dy)
	28	self.id = None
	29	self.list_group_id = []
	30	self.group_id = None
	31	self.is_data = True
	32	self.path = None
	33	self.xtransform = None
	34	self.ytransform = None
	35	self.title = ""
	36	self.scale = None
	37
	38	def copy_from_datainfo(self, data1d):
	39	"""
	40	copy values of Data1D of type DataLaoder.Data_info
	41	"""
	42	self.x = copy.deepcopy(data1d.x)
	43	self.y = copy.deepcopy(data1d.y)
	44	self.dy = copy.deepcopy(data1d.dy)
	45
	46	if hasattr(data1d, "dx"):
	47	self.dx = copy.deepcopy(data1d.dx)
	48	if hasattr(data1d, "dxl"):
	49	self.dxl = copy.deepcopy(data1d.dxl)
	50	if hasattr(data1d, "dxw"):
	51	self.dxw = copy.deepcopy(data1d.dxw)
	52
	53	self.xaxis(data1d._xaxis, data1d._xunit)
	54	self.yaxis(data1d._yaxis, data1d._yunit)
	55	self.title = data1d.title
[749b715]	56	self.isSesans = data1d.isSesans
[fef38e8]	57
	58	def __str__(self):
	59	"""
	60	print data
	61	"""
	62	_str = "%s\n" % LoadData1D.__str__(self)
	63
	64	return _str
	65
	66	def _perform_operation(self, other, operation):
	67	"""
	68	"""
	69	# First, check the data compatibility
	70	dy, dy_other = self._validity_check(other)
	71	result = Data1D(x=[], y=[], dx=None, dy=None)
	72	result.clone_without_data(length=len(self.x), clone=self)
	73	result.copy_from_datainfo(data1d=self)
[cee5c78]	74	if self.dxw is None:
[fef38e8]	75	result.dxw = None
	76	else:
	77	result.dxw = numpy.zeros(len(self.x))
[cee5c78]	78	if self.dxl is None:
[fef38e8]	79	result.dxl = None
	80	else:
	81	result.dxl = numpy.zeros(len(self.x))
	82
	83	for i in range(len(self.x)):
	84	result.x[i] = self.x[i]
	85	if self.dx is not None and len(self.x) == len(self.dx):
	86	result.dx[i] = self.dx[i]
	87	if self.dxw is not None and len(self.x) == len(self.dxw):
	88	result.dxw[i] = self.dxw[i]
	89	if self.dxl is not None and len(self.x) == len(self.dxl):
	90	result.dxl[i] = self.dxl[i]
	91
	92	a = Uncertainty(self.y[i], dy[i]**2)
	93	if isinstance(other, Data1D):
	94	b = Uncertainty(other.y[i], dy_other[i]**2)
	95	if other.dx is not None:
	96	result.dx[i] *= self.dx[i]
	97	result.dx[i] += (other.dx[i]**2)
	98	result.dx[i] /= 2
	99	result.dx[i] = math.sqrt(result.dx[i])
	100	if result.dxl is not None and other.dxl is not None:
	101	result.dxl[i] *= self.dxl[i]
	102	result.dxl[i] += (other.dxl[i]**2)
	103	result.dxl[i] /= 2
	104	result.dxl[i] = math.sqrt(result.dxl[i])
	105	else:
	106	b = other
	107
	108	output = operation(a, b)
	109	result.y[i] = output.x
	110	result.dy[i] = math.sqrt(math.fabs(output.variance))
	111	return result
	112
	113	def _perform_union(self, other):
	114	"""
	115	"""
	116	# First, check the data compatibility
	117	self._validity_check_union(other)
	118	result = Data1D(x=[], y=[], dx=None, dy=None)
	119	tot_length = len(self.x) + len(other.x)
	120	result = self.clone_without_data(length=tot_length, clone=result)
[cee5c78]	121	if self.dy is None or other.dy is None:
[fef38e8]	122	result.dy = None
	123	else:
	124	result.dy = numpy.zeros(tot_length)
[cee5c78]	125	if self.dx is None or other.dx is None:
[fef38e8]	126	result.dx = None
	127	else:
	128	result.dx = numpy.zeros(tot_length)
[cee5c78]	129	if self.dxw is None or other.dxw is None:
[fef38e8]	130	result.dxw = None
	131	else:
	132	result.dxw = numpy.zeros(tot_length)
[cee5c78]	133	if self.dxl is None or other.dxl is None:
[fef38e8]	134	result.dxl = None
	135	else:
	136	result.dxl = numpy.zeros(tot_length)
	137
	138	result.x = numpy.append(self.x, other.x)
	139	#argsorting
	140	ind = numpy.argsort(result.x)
	141	result.x = result.x[ind]
	142	result.y = numpy.append(self.y, other.y)
	143	result.y = result.y[ind]
[cee5c78]	144	if result.dy is not None:
[fef38e8]	145	result.dy = numpy.append(self.dy, other.dy)
	146	result.dy = result.dy[ind]
	147	if result.dx is not None:
	148	result.dx = numpy.append(self.dx, other.dx)
	149	result.dx = result.dx[ind]
	150	if result.dxw is not None:
	151	result.dxw = numpy.append(self.dxw, other.dxw)
	152	result.dxw = result.dxw[ind]
	153	if result.dxl is not None:
	154	result.dxl = numpy.append(self.dxl, other.dxl)
	155	result.dxl = result.dxl[ind]
	156	return result
	157
	158	class Data2D(PlottableData2D, LoadData2D):
	159	"""
	160	"""
	161	def __init__(self, image=None, err_image=None,
	162	qx_data=None, qy_data=None, q_data=None,
	163	mask=None, dqx_data=None, dqy_data=None,
	164	xmin=None, xmax=None, ymin=None, ymax=None,
	165	zmin=None, zmax=None):
	166	"""
	167	"""
	168	PlottableData2D.__init__(self, image=image, err_image=err_image,
	169	xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax,
	170	zmin=zmin, zmax=zmax, qx_data=qx_data,
	171	qy_data=qy_data)
	172
	173	LoadData2D.__init__(self, data=image, err_data=err_image,
	174	qx_data=qx_data, qy_data=qy_data,
	175	dqx_data=dqx_data, dqy_data=dqy_data,
	176	q_data=q_data, mask=mask)
	177	self.id = None
	178	self.list_group_id = []
	179	self.group_id = None
	180	self.is_data = True
	181	self.path = None
	182	self.xtransform = None
	183	self.ytransform = None
	184	self.title = ""
	185	self.scale = None
	186
	187	def copy_from_datainfo(self, data2d):
	188	"""
	189	copy value of Data2D of type DataLoader.data_info
	190	"""
	191	self.data = copy.deepcopy(data2d.data)
	192	self.qx_data = copy.deepcopy(data2d.qx_data)
	193	self.qy_data = copy.deepcopy(data2d.qy_data)
	194	self.q_data = copy.deepcopy(data2d.q_data)
	195	self.mask = copy.deepcopy(data2d.mask)
	196	self.err_data = copy.deepcopy(data2d.err_data)
	197	self.x_bins = copy.deepcopy(data2d.x_bins)
	198	self.y_bins = copy.deepcopy(data2d.y_bins)
	199	if data2d.dqx_data is not None:
	200	self.dqx_data = copy.deepcopy(data2d.dqx_data)
	201	if data2d.dqy_data is not None:
	202	self.dqy_data = copy.deepcopy(data2d.dqy_data)
	203	self.xmin = data2d.xmin
	204	self.xmax = data2d.xmax
	205	self.ymin = data2d.ymin
	206	self.ymax = data2d.ymax
	207	if hasattr(data2d, "zmin"):
	208	self.zmin = data2d.zmin
	209	if hasattr(data2d, "zmax"):
	210	self.zmax = data2d.zmax
	211	self.xaxis(data2d._xaxis, data2d._xunit)
	212	self.yaxis(data2d._yaxis, data2d._yunit)
	213	self.title = data2d.title
	214
	215	def __str__(self):
	216	"""
	217	print data
	218	"""
	219	_str = "%s\n" % LoadData2D.__str__(self)
	220	return _str
	221
	222	def _perform_operation(self, other, operation):
	223	"""
	224	Perform 2D operations between data sets
	225
	226	:param other: other data set
	227	:param operation: function defining the operation
	228
	229	"""
	230	# First, check the data compatibility
	231	dy, dy_other = self._validity_check(other)
	232	result = Data2D(image=None, qx_data=None, qy_data=None,
	233	q_data=None, err_image=None, xmin=None, xmax=None,
	234	ymin=None, ymax=None, zmin=None, zmax=None)
	235	result.clone_without_data(len(self.data))
	236	result.copy_from_datainfo(data2d=self)
	237	result.xmin = self.xmin
	238	result.xmax = self.xmax
	239	result.ymin = self.ymin
	240	result.ymax = self.ymax
[cee5c78]	241	if self.dqx_data is None or self.dqy_data is None:
[fef38e8]	242	result.dqx_data = None
	243	result.dqy_data = None
	244	else:
	245	result.dqx_data = numpy.zeros(len(self.data))
	246	result.dqy_data = numpy.zeros(len(self.data))
	247	for i in range(numpy.size(self.data)):
	248	result.data[i] = self.data[i]
	249	if self.err_data is not None and \
	250	numpy.size(self.data) == numpy.size(self.err_data):
	251	result.err_data[i] = self.err_data[i]
	252	if self.dqx_data is not None:
	253	result.dqx_data[i] = self.dqx_data[i]
	254	if self.dqy_data is not None:
	255	result.dqy_data[i] = self.dqy_data[i]
	256	result.qx_data[i] = self.qx_data[i]
	257	result.qy_data[i] = self.qy_data[i]
	258	result.q_data[i] = self.q_data[i]
	259	result.mask[i] = self.mask[i]
	260
	261	a = Uncertainty(self.data[i], dy[i]**2)
	262	if isinstance(other, Data2D):
	263	b = Uncertainty(other.data[i], dy_other[i]**2)
	264	if other.dqx_data is not None and \
	265	result.dqx_data is not None:
	266	result.dqx_data[i] *= self.dqx_data[i]
	267	result.dqx_data[i] += (other.dqx_data[i]**2)
	268	result.dqx_data[i] /= 2
	269	result.dqx_data[i] = math.sqrt(result.dqx_data[i])
	270	if other.dqy_data is not None and \
	271	result.dqy_data is not None:
	272	result.dqy_data[i] *= self.dqy_data[i]
	273	result.dqy_data[i] += (other.dqy_data[i]**2)
	274	result.dqy_data[i] /= 2
	275	result.dqy_data[i] = math.sqrt(result.dqy_data[i])
	276	else:
	277	b = other
	278
	279	output = operation(a, b)
	280	result.data[i] = output.x
	281	result.err_data[i] = math.sqrt(math.fabs(output.variance))
	282	return result
	283
	284	def _perform_union(self, other):
	285	"""
	286	Perform 2D operations between data sets
	287
	288	:param other: other data set
	289	:param operation: function defining the operation
	290
	291	"""
	292	# First, check the data compatibility
	293	self._validity_check_union(other)
	294	result = Data2D(image=None, qx_data=None, qy_data=None,
	295	q_data=None, err_image=None, xmin=None, xmax=None,
	296	ymin=None, ymax=None, zmin=None, zmax=None)
	297	length = len(self.data)
	298	tot_length = length + len(other.data)
	299	result.clone_without_data(tot_length)
	300	result.xmin = self.xmin
	301	result.xmax = self.xmax
	302	result.ymin = self.ymin
	303	result.ymax = self.ymax
[cee5c78]	304	if self.dqx_data is None or self.dqy_data is None or \
	305	other.dqx_data is None or other.dqy_data is None :
[fef38e8]	306	result.dqx_data = None
	307	result.dqy_data = None
	308	else:
	309	result.dqx_data = numpy.zeros(len(self.data) + \
	310	numpy.size(other.data))
	311	result.dqy_data = numpy.zeros(len(self.data) + \
	312	numpy.size(other.data))
	313
	314	result.data = numpy.append(self.data, other.data)
	315	result.qx_data = numpy.append(self.qx_data, other.qx_data)
	316	result.qy_data = numpy.append(self.qy_data, other.qy_data)
	317	result.q_data = numpy.append(self.q_data, other.q_data)
	318	result.mask = numpy.append(self.mask, other.mask)
	319	if result.err_data is not None:
	320	result.err_data = numpy.append(self.err_data, other.err_data)
	321	if self.dqx_data is not None:
	322	result.dqx_data = numpy.append(self.dqx_data, other.dqx_data)
	323	if self.dqy_data is not None:
	324	result.dqy_data = numpy.append(self.dqy_data, other.dqy_data)
	325
	326	return result
	327
	328	def check_data_validity(data):
	329	"""
	330	Return True is data is valid enough to compute chisqr, else False
	331	"""
	332	flag = True
	333	if data is not None:
	334	if issubclass(data.__class__, Data2D):
	335	if (data.data is None) or (len(data.data) == 0)\
	336	or (len(data.err_data) == 0):
	337	flag = False
	338	else:
	339	if (data.y is None) or (len(data.y) == 0):
	340	flag = False
	341	if not data.is_data:
	342	flag = False
	343	else:
	344	flag = False
	345	return flag

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SasView

source: sasview/src/sas/qtgui/Plotting/PlotterData.py @ c6fb57c

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