source: sasview/src/sas/qtgui/Plotting/PlotUtilities.py @ bfb5d9e

import sys
import numpy
import string

from collections import OrderedDict

# MPL shapes dictionary with some extra styles rendered internally.
# Ordered for consistent display in combo boxes
SHAPES = OrderedDict([
        ('Circle' , 'o'),
        ('Point' , '.'),
        ('Pixel' , ','),
        ('Triangle Down' , 'v'),
        ('Triangle Up' , '^'),
        ('Triangle Left' , '<'),
        ('Triangle Right' , '>'),
        ('Octagon' , '8'),
        ('Square' , 's'),
        ('Pentagon' , 'p'),
        ('Star' , '*'),
        ('Hexagon1' , 'h'),
        ('Hexagon2' , 'H'),
        ('Cross +' , 'p'),
        ('Cross X ' , 'x'),
        ('Diamond' , 'D'),
        ('Thin Diamond' , 'd'),
        ('Line' , '-'),
        ('Dash' , '--'),
        ('Vline' , 'vline'),
        ('Step' , 'step'),
])

# MPL Colors dictionary. Ordered for consistent display
COLORS = OrderedDict([
        ('Blue', 'b'),
        ('Green', 'g'),
        ('Red', 'r'),
        ('Cyan', 'c'),
        ('Magenta', 'm'),
        ('Yellow', 'y'),
        ('Black', 'k'),
        ('Custom', 'x'),
])

def build_matrix(data, qx_data, qy_data):
    """
    Build a matrix for 2d plot from a vector
    Returns a matrix (image) with ~ square binning
    Requirement: need 1d array formats of
    data, qx_data, and qy_data
    where each one corresponds to z, x, or y axis values

    """
    # No qx or qy given in a vector format
    if qx_data is None or qy_data is None \
            or qx_data.ndim != 1 or qy_data.ndim != 1:
        return data

    # maximum # of loops to fillup_pixels
    # otherwise, loop could never stop depending on data
    max_loop = 1
    # get the x and y_bin arrays.
    x_bins, y_bins = get_bins(qx_data, qy_data)
    # set zero to None

    #Note: Can not use scipy.interpolate.Rbf:
    # 'cause too many data points (>10000)<=JHC.
    # 1d array to use for weighting the data point averaging
    #when they fall into a same bin.
    weights_data = numpy.ones([data.size])
    # get histogram of ones w/len(data); this will provide
    #the weights of data on each bins
    weights, xedges, yedges = numpy.histogram2d(x=qy_data,
                                                y=qx_data,
                                                bins=[y_bins, x_bins],
                                                weights=weights_data)
    # get histogram of data, all points into a bin in a way of summing
    image, xedges, yedges = numpy.histogram2d(x=qy_data,
                                              y=qx_data,
                                              bins=[y_bins, x_bins],
                                              weights=data)
    # Now, normalize the image by weights only for weights>1:
    # If weight == 1, there is only one data point in the bin so
    # that no normalization is required.
    image[weights > 1] = image[weights > 1] / weights[weights > 1]
    # Set image bins w/o a data point (weight==0) as None (was set to zero
    # by histogram2d.)
    image[weights == 0] = None

    # Fill empty bins with 8 nearest neighbors only when at least
    #one None point exists
    loop = 0

    # do while loop until all vacant bins are filled up up
    #to loop = max_loop
    while not(numpy.isfinite(image[weights == 0])).all():
        if loop >= max_loop:  # this protects never-ending loop
            break
        image = fillupPixels(image=image, weights=weights)
        loop += 1

    return image

def get_bins(qx_data, qy_data):
    """
    get bins
    return x_bins and y_bins: 1d arrays of the index with
    ~ square binning
    Requirement: need 1d array formats of
    qx_data, and qy_data
    where each one corresponds to  x, or y axis values
    """
    # No qx or qy given in a vector format
    if qx_data is None or qy_data is None \
            or qx_data.ndim != 1 or qy_data.ndim != 1:
        return data

    # find max and min values of qx and qy
    xmax = qx_data.max()
    xmin = qx_data.min()
    ymax = qy_data.max()
    ymin = qy_data.min()

    # calculate the range of qx and qy: this way, it is a little
    # more independent
    x_size = xmax - xmin
    y_size = ymax - ymin

    # estimate the # of pixels on each axes
    npix_y = int(numpy.floor(numpy.sqrt(len(qy_data))))
    npix_x = int(numpy.floor(len(qy_data) / npix_y))

    # bin size: x- & y-directions
    xstep = x_size / (npix_x - 1)
    ystep = y_size / (npix_y - 1)

    # max and min taking account of the bin sizes
    xmax = xmax + xstep / 2.0
    xmin = xmin - xstep / 2.0
    ymax = ymax + ystep / 2.0
    ymin = ymin - ystep / 2.0

    # store x and y bin centers in q space
    x_bins = numpy.linspace(xmin, xmax, npix_x)
    y_bins = numpy.linspace(ymin, ymax, npix_y)

    #set x_bins and y_bins
    return x_bins, y_bins

def fillupPixels(image=None, weights=None):
    """
    Fill z values of the empty cells of 2d image matrix
    with the average over up-to next nearest neighbor points

    :param image: (2d matrix with some zi = None)

    :return: image (2d array )

    :TODO: Find better way to do for-loop below

    """
    # No image matrix given
    if image is None or numpy.ndim(image) != 2 \
            or numpy.isfinite(image).all() \
            or weights is None:
        return image
    # Get bin size in y and x directions
    len_y = len(image)
    len_x = len(image[1])
    temp_image = numpy.zeros([len_y, len_x])
    weit = numpy.zeros([len_y, len_x])
    # do for-loop for all pixels
    for n_y in range(len(image)):
        for n_x in range(len(image[1])):
            # find only null pixels
            if weights[n_y][n_x] > 0 or numpy.isfinite(image[n_y][n_x]):
                continue
            else:
                # find 4 nearest neighbors
                # check where or not it is at the corner
                if n_y != 0 and numpy.isfinite(image[n_y - 1][n_x]):
                    temp_image[n_y][n_x] += image[n_y - 1][n_x]
                    weit[n_y][n_x] += 1
                if n_x != 0 and numpy.isfinite(image[n_y][n_x - 1]):
                    temp_image[n_y][n_x] += image[n_y][n_x - 1]
                    weit[n_y][n_x] += 1
                if n_y != len_y - 1 and numpy.isfinite(image[n_y + 1][n_x]):
                    temp_image[n_y][n_x] += image[n_y + 1][n_x]
                    weit[n_y][n_x] += 1
                if n_x != len_x - 1 and numpy.isfinite(image[n_y][n_x + 1]):
                    temp_image[n_y][n_x] += image[n_y][n_x + 1]
                    weit[n_y][n_x] += 1
                # go 4 next nearest neighbors when no non-zero
                # neighbor exists
                if n_y != 0 and n_x != 0 and\
                        numpy.isfinite(image[n_y - 1][n_x - 1]):
                    temp_image[n_y][n_x] += image[n_y - 1][n_x - 1]
                    weit[n_y][n_x] += 1
                if n_y != len_y - 1 and n_x != 0 and \
                    numpy.isfinite(image[n_y + 1][n_x - 1]):
                    temp_image[n_y][n_x] += image[n_y + 1][n_x - 1]
                    weit[n_y][n_x] += 1
                if n_y != len_y and n_x != len_x - 1 and \
                    numpy.isfinite(image[n_y - 1][n_x + 1]):
                    temp_image[n_y][n_x] += image[n_y - 1][n_x + 1]
                    weit[n_y][n_x] += 1
                if n_y != len_y - 1 and n_x != len_x - 1 and \
                    numpy.isfinite(image[n_y + 1][n_x + 1]):
                    temp_image[n_y][n_x] += image[n_y + 1][n_x + 1]
                    weit[n_y][n_x] += 1

    # get it normalized
    ind = (weit > 0)
    image[ind] = temp_image[ind] / weit[ind]

    return image

def rescale(lo, hi, step, pt=None, bal=None, scale='linear'):
    """
    Rescale (lo,hi) by step, returning the new (lo,hi)
    The scaling is centered on pt, with positive values of step
    driving lo/hi away from pt and negative values pulling them in.
    If bal is given instead of point, it is already in [0,1] coordinates.

    This is a helper function for step-based zooming.
    """
    # Convert values into the correct scale for a linear transformation
    # TODO: use proper scale transformers
    loprev = lo
    hiprev = hi
    if scale == 'log':
        assert lo > 0
        if lo > 0:
            lo = numpy.log10(lo)
        if hi > 0:
            hi = numpy.log10(hi)
        if pt is not None:
            pt = numpy.log10(pt)

    # Compute delta from axis range * %, or 1-% if persent is negative
    if step > 0:
        delta = float(hi - lo) * step / 100
    else:
        delta = float(hi - lo) * step / (100 - step)

    # Add scale factor proportionally to the lo and hi values,
    # preserving the
    # point under the mouse
    if bal is None:
        bal = float(pt - lo) / (hi - lo)
    lo = lo - (bal * delta)
    hi = hi + (1 - bal) * delta

    # Convert transformed values back to the original scale
    if scale == 'log':
        if (lo <= -250) or (hi >= 250):
            lo = loprev
            hi = hiprev
        else:
            lo, hi = numpy.power(10., lo), numpy.power(10., hi)
    return (lo, hi)

def getValidColor(color):
    '''
    Returns a valid matplotlib color
    '''

    if color is None:
        return color

    # Check if it's an int
    if isinstance(color, int):
        # Check if it's within the range
        if 0 <= color <=6:
            color = list(COLORS.values())[color]
    elif isinstance(color, str):
        # This could be a one letter code
        if len(color) == 1:
            if not color in list (COLORS.values()):
                raise AttributeError
        else:
            # or an RGB string
            assert(color[0]=="#" and len(color) == 7)
            assert(all(c in string.hexdigits for c in color[1:]))
    else:
        raise AttributeError

    return color