source: sasview/src/sas/qtgui/Perspectives/Inversion/InversionPerspective.py @ c6fb57c

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalc
Last change on this file since c6fb57c was 0580c77, checked in by Piotr Rozyczko <rozyczko@…>, 7 years ago

Added a tab to Inversion so the widget looks a bit less intimidating
  • Property mode set to 100644
File size: 23.9 KB
Line 
1import sys
2import logging
3import pylab
4import numpy as np
5
6from PyQt5 import QtGui, QtCore, QtWidgets
7
8# sas-global
9import sas.qtgui.Utilities.GuiUtils as GuiUtils
10
11# pr inversion GUI elements
12from .InversionUtils import WIDGETS
13from .UI.TabbedInversionUI import Ui_PrInversion
14from .InversionLogic import InversionLogic
15
16# pr inversion calculation elements
17from sas.sascalc.dataloader.data_info import Data1D
18from sas.sascalc.pr.invertor import Invertor
19
20def is_float(value):
21    """Converts text input values to floats. Empty strings throw ValueError"""
22    try:
23        return float(value)
24    except ValueError:
25        return 0.0
26
27
28# TODO: Remove data
29# TODO: Modify plot references, don't just send new
30# TODO: Update help with batch capabilities
31# TODO: Easy way to scroll through results - no tabs in window(?) - 'spreadsheet'
32# TODO: Method to export results in some meaningful way
33#class InversionWindow(QtWidgets.QTabWidget, Ui_PrInversion):
34class InversionWindow(QtWidgets.QDialog, Ui_PrInversion):
35    """
36    The main window for the P(r) Inversion perspective.
37    """
38
39    name = "Inversion"
40    estimateSignal = QtCore.pyqtSignal(tuple)
41    estimateNTSignal = QtCore.pyqtSignal(tuple)
42    calculateSignal = QtCore.pyqtSignal(tuple)
43
44    def __init__(self, parent=None, data=None):
45        super(InversionWindow, self).__init__()
46        self.setupUi(self)
47
48        self.setWindowTitle("P(r) Inversion Perspective")
49
50        self._manager = parent
51        self._model_item = QtGui.QStandardItem()
52        #self._helpView = QtWebKit.QWebView()
53
54        self.communicate = GuiUtils.Communicate()
55
56        self.logic = InversionLogic()
57
58        # The window should not close
59        self._allow_close = False
60
61        # current QStandardItem showing on the panel
62        self._data = None
63        # current Data1D as referenced by self._data
64        self._data_set = None
65
66        # p(r) calculator
67        self._calculator = Invertor()
68        self._last_calculator = None
69        self.calc_thread = None
70        self.estimation_thread = None
71
72        # Current data object in view
73        self._data_index = 0
74        # list mapping data to p(r) calculation
75        self._data_list = {}
76        if not isinstance(data, list):
77            data_list = [data]
78        if data is not None:
79            for datum in data_list:
80                self._data_list[datum] = self._calculator.clone()
81
82        # dict of models for quick update after calculation
83        # {item:model}
84        self._models = {}
85
86        # plots for current data
87        self.pr_plot = None
88        self.data_plot = None
89        # plot references for all data in perspective
90        self.pr_plot_list = {}
91        self.data_plot_list = {}
92
93        self.model = QtGui.QStandardItemModel(self)
94        self.mapper = QtWidgets.QDataWidgetMapper(self)
95        # Link user interactions with methods
96        self.setupLinks()
97        # Set values
98        self.setupModel()
99        # Set up the Widget Map
100        self.setupMapper()
101        # Set base window state
102        self.setupWindow()
103
104    ######################################################################
105    # Base Perspective Class Definitions
106
107    def communicator(self):
108        return self.communicate
109
110    def allowBatch(self):
111        return True
112
113    def setClosable(self, value=True):
114        """
115        Allow outsiders close this widget
116        """
117        assert isinstance(value, bool)
118        self._allow_close = value
119
120    def closeEvent(self, event):
121        """
122        Overwrite QDialog close method to allow for custom widget close
123        """
124        if self._allow_close:
125            # reset the closability flag
126            self.setClosable(value=False)
127            # Tell the MdiArea to close the container
128            self.parentWidget().close()
129            event.accept()
130        else:
131            event.ignore()
132            # Maybe we should just minimize
133            self.setWindowState(QtCore.Qt.WindowMinimized)
134
135    ######################################################################
136    # Initialization routines
137
138    def setupLinks(self):
139        """Connect the use controls to their appropriate methods"""
140        self.dataList.currentIndexChanged.connect(self.displayChange)
141        self.calculateAllButton.clicked.connect(self.startThreadAll)
142        self.calculateThisButton.clicked.connect(self.startThread)
143        self.removeButton.clicked.connect(self.removeData)
144        self.helpButton.clicked.connect(self.help)
145        self.estimateBgd.toggled.connect(self.toggleBgd)
146        self.manualBgd.toggled.connect(self.toggleBgd)
147        self.regConstantSuggestionButton.clicked.connect(self.acceptAlpha)
148        self.noOfTermsSuggestionButton.clicked.connect(self.acceptNoTerms)
149        self.explorerButton.clicked.connect(self.openExplorerWindow)
150
151        self.backgroundInput.editingFinished.connect(
152            lambda: self._calculator.set_est_bck(int(is_float(
153                self.backgroundInput.text()))))
154        self.minQInput.editingFinished.connect(
155            lambda: self._calculator.set_qmin(is_float(
156                self.minQInput.text())))
157        self.regularizationConstantInput.editingFinished.connect(
158            lambda: self._calculator.set_alpha(is_float(
159                self.regularizationConstantInput.text())))
160        self.maxDistanceInput.editingFinished.connect(
161            lambda: self._calculator.set_dmax(is_float(
162                self.maxDistanceInput.text())))
163        self.maxQInput.editingFinished.connect(
164            lambda: self._calculator.set_qmax(is_float(
165                self.maxQInput.text())))
166        self.slitHeightInput.editingFinished.connect(
167            lambda: self._calculator.set_slit_height(is_float(
168                self.slitHeightInput.text())))
169        self.slitWidthInput.editingFinished.connect(
170            lambda: self._calculator.set_slit_width(is_float(
171                self.slitHeightInput.text())))
172
173        self.model.itemChanged.connect(self.model_changed)
174        self.estimateNTSignal.connect(self._estimateNTUpdate)
175        self.estimateSignal.connect(self._estimateUpdate)
176        self.calculateSignal.connect(self._calculateUpdate)
177
178    def setupMapper(self):
179        # Set up the mapper.
180        self.mapper.setOrientation(QtCore.Qt.Vertical)
181        self.mapper.setModel(self.model)
182
183        # Filename
184        self.mapper.addMapping(self.dataList, WIDGETS.W_FILENAME)
185        # Background
186        self.mapper.addMapping(self.backgroundInput, WIDGETS.W_BACKGROUND_INPUT)
187        self.mapper.addMapping(self.estimateBgd, WIDGETS.W_ESTIMATE)
188        self.mapper.addMapping(self.manualBgd, WIDGETS.W_MANUAL_INPUT)
189
190        # Qmin/Qmax
191        self.mapper.addMapping(self.minQInput, WIDGETS.W_QMIN)
192        self.mapper.addMapping(self.maxQInput, WIDGETS.W_QMAX)
193
194        # Slit Parameter items
195        self.mapper.addMapping(self.slitWidthInput, WIDGETS.W_SLIT_WIDTH)
196        self.mapper.addMapping(self.slitHeightInput, WIDGETS.W_SLIT_HEIGHT)
197
198        # Parameter Items
199        self.mapper.addMapping(self.regularizationConstantInput,
200                               WIDGETS.W_REGULARIZATION)
201        self.mapper.addMapping(self.regConstantSuggestionButton,
202                               WIDGETS.W_REGULARIZATION_SUGGEST)
203        self.mapper.addMapping(self.explorerButton, WIDGETS.W_EXPLORE)
204        self.mapper.addMapping(self.maxDistanceInput, WIDGETS.W_MAX_DIST)
205        self.mapper.addMapping(self.noOfTermsInput, WIDGETS.W_NO_TERMS)
206        self.mapper.addMapping(self.noOfTermsSuggestionButton,
207                               WIDGETS.W_NO_TERMS_SUGGEST)
208
209        # Output
210        self.mapper.addMapping(self.rgValue, WIDGETS.W_RG)
211        self.mapper.addMapping(self.iQ0Value, WIDGETS.W_I_ZERO)
212        self.mapper.addMapping(self.backgroundValue, WIDGETS.W_BACKGROUND_OUTPUT)
213        self.mapper.addMapping(self.computationTimeValue, WIDGETS.W_COMP_TIME)
214        self.mapper.addMapping(self.chiDofValue, WIDGETS.W_CHI_SQUARED)
215        self.mapper.addMapping(self.oscillationValue, WIDGETS.W_OSCILLATION)
216        self.mapper.addMapping(self.posFractionValue, WIDGETS.W_POS_FRACTION)
217        self.mapper.addMapping(self.sigmaPosFractionValue,
218                               WIDGETS.W_SIGMA_POS_FRACTION)
219
220        # Main Buttons
221        self.mapper.addMapping(self.removeButton, WIDGETS.W_REMOVE)
222        self.mapper.addMapping(self.calculateAllButton, WIDGETS.W_CALCULATE_ALL)
223        self.mapper.addMapping(self.calculateThisButton,
224                               WIDGETS.W_CALCULATE_VISIBLE)
225        self.mapper.addMapping(self.helpButton, WIDGETS.W_HELP)
226
227        self.mapper.toFirst()
228
229    def setupModel(self):
230        """
231        Update boxes with initial values
232        """
233        item = QtGui.QStandardItem("")
234        self.model.setItem(WIDGETS.W_FILENAME, item)
235        item = QtGui.QStandardItem('0.0')
236        self.model.setItem(WIDGETS.W_BACKGROUND_INPUT, item)
237        item = QtGui.QStandardItem("")
238        self.model.setItem(WIDGETS.W_QMIN, item)
239        item = QtGui.QStandardItem("")
240        self.model.setItem(WIDGETS.W_QMAX, item)
241        item = QtGui.QStandardItem("")
242        self.model.setItem(WIDGETS.W_SLIT_WIDTH, item)
243        item = QtGui.QStandardItem("")
244        self.model.setItem(WIDGETS.W_SLIT_HEIGHT, item)
245        item = QtGui.QStandardItem("10")
246        self.model.setItem(WIDGETS.W_NO_TERMS, item)
247        item = QtGui.QStandardItem("0.0001")
248        self.model.setItem(WIDGETS.W_REGULARIZATION, item)
249        item = QtGui.QStandardItem("140.0")
250        self.model.setItem(WIDGETS.W_MAX_DIST, item)
251        item = QtGui.QStandardItem("")
252        self.model.setItem(WIDGETS.W_RG, item)
253        item = QtGui.QStandardItem("")
254        self.model.setItem(WIDGETS.W_I_ZERO, item)
255        item = QtGui.QStandardItem("")
256        self.model.setItem(WIDGETS.W_BACKGROUND_OUTPUT, item)
257        item = QtGui.QStandardItem("")
258        self.model.setItem(WIDGETS.W_COMP_TIME, item)
259        item = QtGui.QStandardItem("")
260        self.model.setItem(WIDGETS.W_CHI_SQUARED, item)
261        item = QtGui.QStandardItem("")
262        self.model.setItem(WIDGETS.W_OSCILLATION, item)
263        item = QtGui.QStandardItem("")
264        self.model.setItem(WIDGETS.W_POS_FRACTION, item)
265        item = QtGui.QStandardItem("")
266        self.model.setItem(WIDGETS.W_SIGMA_POS_FRACTION, item)
267
268    def setupWindow(self):
269        """Initialize base window state on init"""
270        #self.setTabPosition(0)
271        self.enableButtons()
272        self.estimateBgd.setChecked(True)
273
274    ######################################################################
275    # Methods for updating GUI
276
277    def enableButtons(self):
278        """
279        Enable buttons when data is present, else disable them
280        """
281        self.removeButton.setEnabled(self.logic.data_is_loaded)
282        self.explorerButton.setEnabled(self.logic.data_is_loaded)
283
284    def populateDataComboBox(self, filename, data_ref):
285        """
286        Append a new file name to the data combobox
287        :param filename: data filename
288        :param data_ref: QStandardItem reference for data set to be added
289        """
290        self.dataList.addItem(filename, data_ref)
291
292    def acceptNoTerms(self):
293        """Send estimated no of terms to input"""
294        self.model.setItem(WIDGETS.W_NO_TERMS, QtGui.QStandardItem(
295            self.noOfTermsSuggestionButton.text()))
296
297    def acceptAlpha(self):
298        """Send estimated alpha to input"""
299        self.model.setItem(WIDGETS.W_REGULARIZATION, QtGui.QStandardItem(
300            self.regConstantSuggestionButton.text()))
301
302    def displayChange(self):
303        ref_item = self.dataList.itemData(self.dataList.currentIndex())
304        self._model_item = ref_item
305        self.setCurrentData(ref_item)
306        self.setCurrentModel(ref_item)
307
308    def removeData(self):
309        """Remove the existing data reference from the P(r) Persepective"""
310        self._data_list.pop(self._data)
311        self.pr_plot_list.pop(self._data)
312        self.data_plot_list.pop(self._data)
313        self.dataList.removeItem(self.dataList.currentIndex())
314        self.dataList.setCurrentIndex(0)
315
316    ######################################################################
317    # GUI Interaction Events
318
319    def setCurrentModel(self, ref_item):
320        '''update the current model with stored values'''
321        if ref_item in self._models:
322            self.model = self._models[ref_item]
323
324    def update_calculator(self):
325        """Update all p(r) params"""
326        self._calculator.set_x(self._data_set.x)
327        self._calculator.set_y(self._data_set.y)
328        self._calculator.set_err(self._data_set.dy)
329
330    def model_changed(self):
331        """Update the values when user makes changes"""
332        if not self.mapper:
333            msg = "Unable to update P{r}. The connection between the main GUI "
334            msg += "and P(r) was severed. Attempting to restart P(r)."
335            logging.warning(msg)
336            self.setClosable(True)
337            self.close()
338            InversionWindow.__init__(self.parent(), list(self._data_list.keys()))
339            exit(0)
340        # TODO: Only send plot first time - otherwise, update in complete
341        if self.pr_plot is not None:
342            title = self.pr_plot.name
343            GuiUtils.updateModelItemWithPlot(self._data, self.pr_plot, title)
344        if self.data_plot is not None:
345            title = self.data_plot.name
346            GuiUtils.updateModelItemWithPlot(self._data, self.data_plot, title)
347        self.mapper.toFirst()
348
349    def help(self):
350        """
351        Open the P(r) Inversion help browser
352        """
353        tree_location = (GuiUtils.HELP_DIRECTORY_LOCATION +
354                         "user/sasgui/perspectives/pr/pr_help.html")
355
356        # Actual file anchor will depend on the combo box index
357        # Note that we can be clusmy here, since bad current_fitter_id
358        # will just make the page displayed from the top
359        #self._helpView.load(QtCore.QUrl(tree_location))
360        #self._helpView.show()
361
362    def toggleBgd(self):
363        """
364        Toggle the background between manual and estimated
365        """
366        sender = self.sender()
367        if sender is self.estimateBgd:
368            self.backgroundInput.setEnabled(False)
369        else:
370            self.backgroundInput.setEnabled(True)
371
372    def openExplorerWindow(self):
373        """
374        Open the Explorer window to see correlations between params and results
375        """
376        # TODO: Link Invertor() and DmaxWindow so window updates when recalculated
377        from .DMaxExplorerWidget import DmaxWindow
378        self.dmaxWindow = DmaxWindow(self._calculator, self.getNFunc(), self)
379        self.dmaxWindow.show()
380
381    ######################################################################
382    # Response Actions
383
384    def setData(self, data_item=None, is_batch=False):
385        """
386        Assign new data set(s) to the P(r) perspective
387        Obtain a QStandardItem object and parse it to get Data1D/2D
388        Pass it over to the calculator
389        """
390        assert data_item is not None
391
392        if not isinstance(data_item, list):
393            msg = "Incorrect type passed to the P(r) Perspective"
394            raise AttributeError
395
396        for data in data_item:
397            # Create initial internal mappings
398            self._data_list[data] = self._calculator.clone()
399            self._data_set = GuiUtils.dataFromItem(data)
400            self.data_plot_list[data] = self.data_plot
401            self.pr_plot_list[data] = self.pr_plot
402            self.populateDataComboBox(self._data_set.filename, data)
403            self.setCurrentData(data)
404
405            # Estimate initial values from data
406            self.performEstimate()
407            self.logic = InversionLogic(self._data_set)
408
409            # Estimate q range
410            qmin, qmax = self.logic.computeDataRange()
411            self.model.setItem(WIDGETS.W_QMIN, QtGui.QStandardItem("{:.4g}".format(qmin)))
412            self.model.setItem(WIDGETS.W_QMAX, QtGui.QStandardItem("{:.4g}".format(qmax)))
413            self._models[data] = self.model
414            self.model_item = data
415
416        self.enableButtons()
417
418    def getNFunc(self):
419        """Get the n_func value from the GUI object"""
420        return int(self.noOfTermsInput.text())
421
422    def setCurrentData(self, data_ref):
423        """Get the current data and display as necessary"""
424
425        if data_ref is None:
426            return
427
428        if not isinstance(data_ref, QtGui.QStandardItem):
429            msg = "Incorrect type passed to the P(r) Perspective"
430            raise AttributeError
431
432        # Data references
433        self._data = data_ref
434        self._data_set = GuiUtils.dataFromItem(data_ref)
435        self._calculator = self._data_list[data_ref]
436        self.pr_plot = self.pr_plot_list[data_ref]
437        self.data_plot = self.data_plot_list[data_ref]
438
439    ######################################################################
440    # Thread Creators
441
442    # TODO: Move to individual class(?)
443
444    def startThreadAll(self):
445        for data_ref, pr in list(self._data_list.items()):
446            self._data_set = GuiUtils.dataFromItem(data_ref)
447            self._calculator = pr
448            self.startThread()
449
450    def startThread(self):
451        """
452            Start a calculation thread
453        """
454        from .Thread import CalcPr
455
456        # Set data before running the calculations
457        self.update_calculator()
458
459        # If a thread is already started, stop it
460        if self.calc_thread is not None and self.calc_thread.isrunning():
461            self.calc_thread.stop()
462        pr = self._calculator.clone()
463        nfunc = self.getNFunc()
464        self.calc_thread = CalcPr(pr, nfunc,
465                                  error_func=self._threadError,
466                                  completefn=self._calculateCompleted,
467                                  updatefn=None)
468        self.calc_thread.queue()
469        self.calc_thread.ready(2.5)
470
471    def performEstimateNT(self):
472        """
473        Perform parameter estimation
474        """
475        from .Thread import EstimateNT
476
477        # If a thread is already started, stop it
478        if (self.estimation_thread is not None and
479                self.estimation_thread.isrunning()):
480            self.estimation_thread.stop()
481        pr = self._calculator.clone()
482        # Skip the slit settings for the estimation
483        # It slows down the application and it doesn't change the estimates
484        pr.slit_height = 0.0
485        pr.slit_width = 0.0
486        nfunc = self.getNFunc()
487
488        self.estimation_thread = EstimateNT(pr, nfunc,
489                                            error_func=self._threadError,
490                                            completefn=self._estimateNTCompleted,
491                                            updatefn=None)
492        self.estimation_thread.queue()
493        self.estimation_thread.ready(2.5)
494
495    def performEstimate(self):
496        """
497            Perform parameter estimation
498        """
499        from .Thread import EstimatePr
500
501        self.startThread()
502
503        # If a thread is already started, stop it
504        if (self.estimation_thread is not None and
505                self.estimation_thread.isrunning()):
506            self.estimation_thread.stop()
507        pr = self._calculator.clone()
508        nfunc = self.getNFunc()
509        self.estimation_thread = EstimatePr(pr, nfunc,
510                                            error_func=self._threadError,
511                                            completefn=self._estimateCompleted,
512                                            updatefn=None)
513        self.estimation_thread.queue()
514        self.estimation_thread.ready(2.5)
515
516    ######################################################################
517    # Thread Complete
518
519    def _estimateCompleted(self, alpha, message, elapsed):
520        ''' Send a signal to the main thread for model update'''
521        self.estimateSignal.emit((alpha, message, elapsed))
522
523    def _estimateUpdate(self, output_tuple):
524        """
525        Parameter estimation completed,
526        display the results to the user
527
528        :param alpha: estimated best alpha
529        :param elapsed: computation time
530        """
531        alpha, message, elapsed = output_tuple
532        # Save useful info
533        self.model.setItem(WIDGETS.W_COMP_TIME, QtGui.QStandardItem(str(elapsed)))
534        self.regConstantSuggestionButton.setText("{:-3.2g}".format(alpha))
535        self.regConstantSuggestionButton.setEnabled(True)
536        if message:
537            logging.info(message)
538        self.performEstimateNT()
539
540    def _estimateNTCompleted(self, nterms, alpha, message, elapsed):
541        ''' Send a signal to the main thread for model update'''
542        self.estimateNTSignal.emit((nterms, alpha, message, elapsed))
543
544    def _estimateNTUpdate(self, output_tuple):
545        """
546        Parameter estimation completed,
547        display the results to the user
548
549        :param alpha: estimated best alpha
550        :param nterms: estimated number of terms
551        :param elapsed: computation time
552        """
553        nterms, alpha, message, elapsed = output_tuple
554        # Save useful info
555        self.noOfTermsSuggestionButton.setText("{:n}".format(nterms))
556        self.noOfTermsSuggestionButton.setEnabled(True)
557        self.regConstantSuggestionButton.setText("{:.3g}".format(alpha))
558        self.regConstantSuggestionButton.setEnabled(True)
559        self.model.setItem(WIDGETS.W_COMP_TIME, QtGui.QStandardItem(str(elapsed)))
560        if message:
561            logging.info(message)
562
563    def _calculateCompleted(self, out, cov, pr, elapsed):
564        ''' Send a signal to the main thread for model update'''
565        self.calculateSignal.emit((out, cov, pr, elapsed))
566
567    def _calculateUpdate(self, output_tuple):
568        """
569        Method called with the results when the inversion is done
570
571        :param out: output coefficient for the base functions
572        :param cov: covariance matrix
573        :param pr: Invertor instance
574        :param elapsed: time spent computing
575        """
576        out, cov, pr, elapsed = output_tuple
577        # Save useful info
578        cov = np.ascontiguousarray(cov)
579        pr.cov = cov
580        pr.out = out
581        pr.elapsed = elapsed
582
583        # Show result on control panel
584
585        # TODO: Connect self._calculator to GUI - two-to-one connection possible?
586        self.model.setItem(WIDGETS.W_RG, QtGui.QStandardItem(str(pr.rg(out))))
587        self.model.setItem(WIDGETS.W_I_ZERO, QtGui.QStandardItem(str(pr.iq0(out))))
588        self.model.setItem(WIDGETS.W_BACKGROUND_INPUT,
589                           QtGui.QStandardItem("{:.3f}".format(pr.est_bck)))
590        self.model.setItem(WIDGETS.W_BACKGROUND_OUTPUT, QtGui.QStandardItem(str(pr.background)))
591        self.model.setItem(WIDGETS.W_CHI_SQUARED, QtGui.QStandardItem(str(pr.chi2[0])))
592        self.model.setItem(WIDGETS.W_COMP_TIME, QtGui.QStandardItem(str(elapsed)))
593        self.model.setItem(WIDGETS.W_OSCILLATION, QtGui.QStandardItem(str(pr.oscillations(out))))
594        self.model.setItem(WIDGETS.W_POS_FRACTION, QtGui.QStandardItem(str(pr.get_positive(out))))
595        self.model.setItem(WIDGETS.W_SIGMA_POS_FRACTION,
596                           QtGui.QStandardItem(str(pr.get_pos_err(out, cov))))
597
598        # Save Pr invertor
599        self._calculator = pr
600        # Append data to data list
601        self._data_list[self._data] = self._calculator.clone()
602
603        # Update model dict
604        self._models[self.model_item] = self.model
605
606        # Create new P(r) and fit plots
607        if self.pr_plot is None:
608            self.pr_plot = self.logic.newPRPlot(out, self._calculator, cov)
609            self.pr_plot_list[self._data] = self.pr_plot
610        else:
611            # FIXME: this should update the existing plot, not create a new one
612            self.pr_plot = self.logic.newPRPlot(out, self._calculator, cov)
613            self.pr_plot_list[self._data] = self.pr_plot
614        if self.data_plot is None:
615            self.data_plot = self.logic.new1DPlot(out, self._calculator)
616            self.data_plot_list[self._data] = self.data_plot
617        else:
618            # FIXME: this should update the existing plot, not create a new one
619            self.data_plot = self.logic.new1DPlot(out, self._calculator)
620            self.data_plot_list[self._data] = self.data_plot
621
622    def _threadError(self, error):
623        """
624            Call-back method for calculation errors
625        """
626        logging.warning(error)
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