InvariantPerspective.py @ 01ef3f7

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalc

Last change on this file since 01ef3f7 was e90988c, checked in by Piotr Rozyczko <rozyczko@…>, 7 years ago
Show help pages in default browser. Fixed some help links and modified unit tests. SASVIEW-800
Property mode set to `100644`
File size: 30.7 KB

Rev	Line
[f721030]	1	# global
	2	import sys
	3	import os
[f1f3e6a]	4	import logging
	5	import copy
	6	import webbrowser
	7
[4992ff2]	8	from PyQt5 import QtCore
[f1f3e6a]	9	from PyQt5 import QtGui, QtWidgets
[f721030]	10
	11	from twisted.internet import threads
[1042dba]	12	from twisted.internet import reactor
[f721030]	13
	14	# sas-global
	15	from sas.sascalc.invariant import invariant
[dc5ef15]	16	from sas.qtgui.Plotting.PlotterData import Data1D
[83eb5208]	17	import sas.qtgui.Utilities.GuiUtils as GuiUtils
[f721030]	18
[f1f3e6a]	19	# import sas.qtgui.Plotting.PlotHelper as PlotHelper
	20
[f721030]	21	# local
[b3e8629]	22	from .UI.TabbedInvariantUI import Ui_tabbedInvariantUI
	23	from .InvariantDetails import DetailsDialog
	24	from .InvariantUtils import WIDGETS
[f721030]	25
	26	# The minimum q-value to be used when extrapolating
	27	Q_MINIMUM = 1e-5
	28	# The maximum q-value to be used when extrapolating
	29	Q_MAXIMUM = 10
	30	# the ratio of maximum q value/(qmax of data) to plot the theory data
	31	Q_MAXIMUM_PLOT = 3
[f1f3e6a]	32	# Default number of points of interpolation: high and low range
	33	NPOINTS_Q_INTERP = 10
	34	# Default power law for interpolation
	35	DEFAULT_POWER_LOW = 4
[f721030]	36
[f1f3e6a]	37	# Background of line edits if settings OK or wrong
	38	BG_WHITE = "background-color: rgb(255, 255, 255);"
	39	BG_RED = "background-color: rgb(244, 170, 164);"
[f721030]	40
[4992ff2]	41	class InvariantWindow(QtWidgets.QDialog, Ui_tabbedInvariantUI):
[f721030]	42	# The controller which is responsible for managing signal slots connections
	43	# for the gui and providing an interface to the data model.
[f1f3e6a]	44	name = "Invariant" # For displaying in the combo box in DataExplorer
	45
[0979dfb]	46	def __init__(self, parent=None):
	47	super(InvariantWindow, self).__init__()
[469b4622]	48	self.setupUi(self)
	49
[f721030]	50	self.setWindowTitle("Invariant Perspective")
[e540cd2]	51
[f721030]	52	# initial input params
	53	self._background = 0.0
	54	self._scale = 1.0
	55	self._contrast = 1.0
[f1f3e6a]	56	self._porod = None
	57
	58	self.parent = parent
[f721030]	59
[0979dfb]	60	self._manager = parent
[6fd4e36]	61	self._reactor = reactor
[a281ab8]	62	self._model_item = QtGui.QStandardItem()
[f721030]	63
	64	self.detailsDialog = DetailsDialog(self)
[f1f3e6a]	65	self.detailsDialog.cmdOK.clicked.connect(self.enabling)
[f721030]	66
	67	self._low_extrapolate = False
[f1f3e6a]	68	self._low_guinier = True
	69	self._low_fit = False
	70	self._low_power_value = False
	71	self._low_points = NPOINTS_Q_INTERP
	72	self._low_power_value = DEFAULT_POWER_LOW
	73
[f721030]	74	self._high_extrapolate = False
[f1f3e6a]	75	self._high_power_value = False
	76	self._high_fit = False
	77	self._high_points = NPOINTS_Q_INTERP
	78	self._high_power_value = DEFAULT_POWER_LOW
[f721030]	79
[d813cad8]	80	# no reason to have this widget resizable
[d1955d67]	81	self.resize(self.minimumSizeHint())
[28a84e9]	82
[f1f3e6a]	83	self.communicate = self._manager.communicator()
[f721030]	84
[469b4622]	85	self._data = None
	86	self._path = ""
	87
[b1e36a3]	88	self._allow_close = False
	89
[f1f3e6a]	90	# Modify font in order to display Angstrom symbol correctly
	91	new_font = 'font-family: -apple-system, "Helvetica Neue", "Ubuntu";'
	92	self.lblTotalQUnits.setStyleSheet(new_font)
	93	self.lblSpecificSurfaceUnits.setStyleSheet(new_font)
	94	self.lblInvariantTotalQUnits.setStyleSheet(new_font)
	95	self.lblContrastUnits.setStyleSheet(new_font)
	96	self.lblPorodCstUnits.setStyleSheet(new_font)
	97	self.lblExtrapolQUnits.setStyleSheet(new_font)
	98
	99	# To remove blue square around line edits
	100	self.txtBackgd.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	101	self.txtContrast.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	102	self.txtScale.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	103	self.txtPorodCst.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	104	self.txtNptsHighQ.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	105	self.txtNptsLowQ.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	106	self.txtPowerLowQ.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	107	self.txtPowerHighQ.setAttribute(QtCore.Qt.WA_MacShowFocusRect, False)
	108
	109	self.txtExtrapolQMin.setText(str(Q_MINIMUM))
	110	self.txtExtrapolQMax.setText(str(Q_MAXIMUM))
[f721030]	111
	112	# Let's choose the Standard Item Model.
	113	self.model = QtGui.QStandardItemModel(self)
	114
	115	# Connect buttons to slots.
	116	# Needs to be done early so default values propagate properly.
	117	self.setupSlots()
	118
	119	# Set up the model.
	120	self.setupModel()
	121
	122	# Set up the mapper
	123	self.setupMapper()
	124
[7c487846]	125	# Default enablement
	126	self.cmdCalculate.setEnabled(False)
	127
[f1f3e6a]	128	# validator: double
[7c487846]	129	self.txtBackgd.setValidator(GuiUtils.DoubleValidator())
	130	self.txtContrast.setValidator(GuiUtils.DoubleValidator())
	131	self.txtScale.setValidator(GuiUtils.DoubleValidator())
	132	self.txtPorodCst.setValidator(GuiUtils.DoubleValidator())
[f1f3e6a]	133
	134	# validator: integer number
[7c487846]	135	self.txtNptsLowQ.setValidator(QtGui.QIntValidator())
	136	self.txtNptsHighQ.setValidator(QtGui.QIntValidator())
	137	self.txtPowerLowQ.setValidator(GuiUtils.DoubleValidator())
	138	self.txtPowerHighQ.setValidator(GuiUtils.DoubleValidator())
[f1f3e6a]	139
	140	def enabling(self):
	141	""" """
	142	self.cmdStatus.setEnabled(True)
[457d961]	143
[b1e36a3]	144	def setClosable(self, value=True):
[f1f3e6a]	145	""" Allow outsiders close this widget """
[b1e36a3]	146	assert isinstance(value, bool)
	147
	148	self._allow_close = value
	149
	150	def closeEvent(self, event):
	151	"""
	152	Overwrite QDialog close method to allow for custom widget close
	153	"""
	154	if self._allow_close:
	155	# reset the closability flag
	156	self.setClosable(value=False)
[7c487846]	157	# Tell the MdiArea to close the container
	158	self.parentWidget().close()
[b1e36a3]	159	event.accept()
	160	else:
	161	event.ignore()
	162	# Maybe we should just minimize
	163	self.setWindowState(QtCore.Qt.WindowMinimized)
[e540cd2]	164
[f721030]	165	def updateFromModel(self):
[f1f3e6a]	166	""" Update the globals based on the data in the model """
[f721030]	167	self._background = float(self.model.item(WIDGETS.W_BACKGROUND).text())
[f1f3e6a]	168	self._contrast = float(self.model.item(WIDGETS.W_CONTRAST).text())
	169	self._scale = float(self.model.item(WIDGETS.W_SCALE).text())
	170	if self.model.item(WIDGETS.W_POROD_CST).text() != 'None' \
	171	and self.model.item(WIDGETS.W_POROD_CST).text() != '':
	172	self._porod = float(self.model.item(WIDGETS.W_POROD_CST).text())
	173
	174	# Low extrapolating
	175	self._low_extrapolate = str(self.model.item(WIDGETS.W_ENABLE_LOWQ).text()) == 'true'
[f721030]	176	self._low_points = float(self.model.item(WIDGETS.W_NPTS_LOWQ).text())
[f1f3e6a]	177	self._low_guinier = str(self.model.item(WIDGETS.W_LOWQ_GUINIER).text()) == 'true'
	178	self._low_fit = str(self.model.item(WIDGETS.W_LOWQ_FIT).text()) == 'true'
	179	self._low_power_value = float(self.model.item(WIDGETS.W_LOWQ_POWER_VALUE).text())
[f721030]	180
	181	# High extrapolating
[f1f3e6a]	182	self._high_extrapolate = str(self.model.item(WIDGETS.W_ENABLE_HIGHQ).text()) == 'true'
	183	self._high_points = float(self.model.item(WIDGETS.W_NPTS_HIGHQ).text())
	184	self._high_fit = str(self.model.item(WIDGETS.W_HIGHQ_FIT).text()) == 'true'
	185	self._high_power_value = float(self.model.item(WIDGETS.W_HIGHQ_POWER_VALUE).text())
[f721030]	186
[a281ab8]	187	def calculateInvariant(self):
[f1f3e6a]	188	""" Use twisted to thread the calculations away """
[f721030]	189	# Find out if extrapolation needs to be used.
	190	extrapolation = None
[f1f3e6a]	191	if self._low_extrapolate and not self._high_extrapolate:
[f721030]	192	extrapolation = "low"
[f1f3e6a]	193	elif not self._low_extrapolate and self._high_extrapolate:
[f721030]	194	extrapolation = "high"
	195	elif self._low_extrapolate and self._high_extrapolate:
	196	extrapolation = "both"
	197
[f1f3e6a]	198	# modify the Calculate button to indicate background process
	199	self.cmdCalculate.setText("Calculating...")
	200	self.cmdCalculate.setEnabled(False)
	201
	202	# Send the calculations to separate thread.
	203	d = threads.deferToThread(self.calculateThread, extrapolation)
	204
	205	# Add deferred callback for call return
	206	d.addCallback(self.deferredPlot)
	207	d.addErrback(self.calculationFailed)
	208
	209	def calculationFailed(self, reason):
	210	print("calculation failed: ", reason)
[7fb471d]	211	pass
[5032ea68]	212
[f1f3e6a]	213	def deferredPlot(self, model):
[f721030]	214	"""
[f1f3e6a]	215	Run the GUI/model update in the main thread
[f721030]	216	"""
[f1f3e6a]	217	reactor.callFromThread(lambda: self.plotResult(model))
[f721030]	218
[f1f3e6a]	219	def plotResult(self, model):
	220	""" Plot result of calculation """
[f721030]	221	# Set the button back to available
[f1f3e6a]	222	self.cmdCalculate.setEnabled(True)
	223	self.cmdCalculate.setText("Calculate")
	224	self.cmdStatus.setEnabled(True)
	225
	226	self.model = model
[9387fe3]	227	self.mapper.toFirst()
[f1f3e6a]	228	self._data = GuiUtils.dataFromItem(self._model_item)
[f721030]	229
[a281ab8]	230	# Send the modified model item to DE for keeping in the model
[f1f3e6a]	231	# Currently -unused
[6cb305a]	232	# self.communicate.updateModelFromPerspectiveSignal.emit(self._model_item)
[f1f3e6a]	233
	234	plot_data = GuiUtils.plotsFromCheckedItems(self._manager.filesWidget.model)
	235
	236	self._manager.filesWidget.plotData(plot_data)
[5032ea68]	237
[f1f3e6a]	238	# Update the details dialog in case it is open
	239	self.updateDetailsWidget(model)
	240
	241	def updateDetailsWidget(self, model):
	242	"""
	243	On demand update of the details widget
	244	"""
	245	if self.detailsDialog.isVisible():
	246	self.onStatus()
[f721030]	247
	248	def calculateThread(self, extrapolation):
	249	"""
[5032ea68]	250	Perform Invariant calculations.
	251	TODO: Create a dictionary of results to be sent to DE on completion.
[f721030]	252	"""
	253	self.updateFromModel()
[f1f3e6a]	254	msg = ''
[f721030]	255
	256	qstar_low = 0.0
	257	qstar_low_err = 0.0
	258	qstar_high = 0.0
	259	qstar_high_err = 0.0
	260	qstar_total = 0.0
[f1f3e6a]	261	qstar_total_error = 0.0
[f721030]	262
[f1f3e6a]	263	temp_data = copy.deepcopy(self._data)
[f721030]	264
[f1f3e6a]	265	# Prepare the invariant object
	266	inv = invariant.InvariantCalculator(data=temp_data,
	267	background=self._background,
	268	scale=self._scale)
[f721030]	269	if self._low_extrapolate:
[f1f3e6a]	270
[f721030]	271	function_low = "power_law"
	272	if self._low_guinier:
	273	function_low = "guinier"
	274	if self._low_fit:
	275	self._low_power_value = None
[f1f3e6a]	276
[f721030]	277	inv.set_extrapolation(range="low",
[f1f3e6a]	278	npts=int(self._low_points),
[f721030]	279	function=function_low,
	280	power=self._low_power_value)
	281
	282	if self._high_extrapolate:
	283	function_low = "power_law"
	284	inv.set_extrapolation(range="high",
[f1f3e6a]	285	npts=int(self._high_points),
[f721030]	286	function=function_low,
[f1f3e6a]	287	power=self._high_power_value)
	288	# Compute invariant
[f721030]	289	calculation_failed = False
[f1f3e6a]	290
[f721030]	291	try:
[f1f3e6a]	292	qstar_total, qstar_total_error = inv.get_qstar_with_error()
[f721030]	293	except Exception as ex:
[f1f3e6a]	294	msg += str(ex)
[f721030]	295	calculation_failed = True
	296	# Display relevant information
	297	item = QtGui.QStandardItem("ERROR")
	298	self.model.setItem(WIDGETS.W_INVARIANT, item)
	299	item = QtGui.QStandardItem("ERROR")
	300	self.model.setItem(WIDGETS.W_INVARIANT_ERR, item)
[f1f3e6a]	301
[f721030]	302	try:
	303	volume_fraction, volume_fraction_error = \
	304	inv.get_volume_fraction_with_error(self._contrast)
[f1f3e6a]	305
[f721030]	306	except Exception as ex:
	307	calculation_failed = True
[f1f3e6a]	308	msg += str(ex)
[f721030]	309	# Display relevant information
	310	item = QtGui.QStandardItem("ERROR")
	311	self.model.setItem(WIDGETS.W_VOLUME_FRACTION, item)
	312	item = QtGui.QStandardItem("ERROR")
	313	self.model.setItem(WIDGETS.W_VOLUME_FRACTION_ERR, item)
	314
[f1f3e6a]	315	if self._porod:
	316	try:
	317	surface, surface_error = \
	318	inv.get_surface_with_error(self._contrast, self._porod)
	319	except Exception as ex:
	320	calculation_failed = True
	321	msg += str(ex)
	322	# Display relevant information
	323	item = QtGui.QStandardItem("ERROR")
	324	self.model.setItem(WIDGETS.W_SPECIFIC_SURFACE, item)
	325	item = QtGui.QStandardItem("ERROR")
	326	self.model.setItem(WIDGETS.W_SPECIFIC_SURFACE_ERR, item)
	327	else:
	328	surface = None
	329
	330	if (calculation_failed):
	331	logging.warning('Calculation failed: {}'.format(msg))
[f721030]	332	return self.model
[f1f3e6a]	333	else:
[f721030]	334
[f1f3e6a]	335	if self._low_extrapolate:
	336	# for presentation in InvariantDetails
	337	qstar_low, qstar_low_err = inv.get_qstar_low()
	338	extrapolated_data = inv.get_extra_data_low(self._low_points)
	339	power_low = inv.get_extrapolation_power(range='low')
	340
	341	# Plot the chart
	342	title = "Low-Q extrapolation"
	343
	344	# Convert the data into plottable
	345	extrapolated_data = self._manager.createGuiData(extrapolated_data)
	346
	347	extrapolated_data.name = title
	348	extrapolated_data.title = title
	349
	350	# copy labels and units of axes for plotting
	351	extrapolated_data._xaxis = temp_data._xaxis
	352	extrapolated_data._xunit = temp_data._xunit
	353	extrapolated_data._yaxis = temp_data._yaxis
	354	extrapolated_data._yunit = temp_data._yunit
	355
	356	# Add the plot to the model item
	357	# This needs to run in the main thread
	358	reactor.callFromThread(GuiUtils.updateModelItemWithPlot,
	359	self._model_item,
	360	extrapolated_data,
	361	title)
	362
	363	if self._high_extrapolate:
	364	# for presentation in InvariantDetails
[6cb305a]	365	qmax_plot = Q_MAXIMUM_PLOT * max(temp_data.x)
[f1f3e6a]	366
	367	if qmax_plot > Q_MAXIMUM:
	368	qmax_plot = Q_MAXIMUM
	369	qstar_high, qstar_high_err = inv.get_qstar_high()
	370	power_high = inv.get_extrapolation_power(range='high')
	371	high_out_data = inv.get_extra_data_high(q_end=qmax_plot, npts=500)
	372
	373	# Plot the chart
	374	title = "High-Q extrapolation"
	375
	376	# Convert the data into plottable
	377	high_out_data = self._manager.createGuiData(high_out_data)
	378	high_out_data.name = title
	379	high_out_data.title = title
	380
	381	# copy labels and units of axes for plotting
	382	high_out_data._xaxis = temp_data._xaxis
	383	high_out_data._xunit = temp_data._xunit
	384	high_out_data._yaxis = temp_data._yaxis
	385	high_out_data._yunit = temp_data._yunit
	386
	387	# Add the plot to the model item
	388	# This needs to run in the main thread
	389	reactor.callFromThread(GuiUtils.updateModelItemWithPlot,
	390	self._model_item, high_out_data, title)
	391
	392	item = QtGui.QStandardItem(str(float('%.3g'% volume_fraction)))
	393	self.model.setItem(WIDGETS.W_VOLUME_FRACTION, item)
	394	item = QtGui.QStandardItem(str(float('%.3g'% volume_fraction_error)))
	395	self.model.setItem(WIDGETS.W_VOLUME_FRACTION_ERR, item)
	396	if surface:
	397	item = QtGui.QStandardItem(str(float('%.3g'% surface)))
	398	self.model.setItem(WIDGETS.W_SPECIFIC_SURFACE, item)
	399	item = QtGui.QStandardItem(str(float('%.3g'% surface_error)))
	400	self.model.setItem(WIDGETS.W_SPECIFIC_SURFACE_ERR, item)
	401	item = QtGui.QStandardItem(str(float('%.3g'% qstar_total)))
	402	self.model.setItem(WIDGETS.W_INVARIANT, item)
	403	item = QtGui.QStandardItem(str(float('%.3g'% qstar_total_error)))
	404	self.model.setItem(WIDGETS.W_INVARIANT_ERR, item)
[1042dba]	405
[f1f3e6a]	406	item = QtGui.QStandardItem(str(float('%.3g'% qstar_low)))
	407	self.model.setItem(WIDGETS.D_LOW_QSTAR, item)
	408	item = QtGui.QStandardItem(str(float('%.3g'% qstar_low_err)))
	409	self.model.setItem(WIDGETS.D_LOW_QSTAR_ERR, item)
	410	item = QtGui.QStandardItem(str(float('%.3g'% qstar_high)))
	411	self.model.setItem(WIDGETS.D_HIGH_QSTAR, item)
	412	item = QtGui.QStandardItem(str(float('%.3g'% qstar_high_err)))
	413	self.model.setItem(WIDGETS.D_HIGH_QSTAR_ERR, item)
[f721030]	414
[f1f3e6a]	415	return self.model
[f721030]	416
[5032ea68]	417	def title(self):
[f1f3e6a]	418	""" Perspective name """
[5032ea68]	419	return "Invariant panel"
[f721030]	420
[f1f3e6a]	421	def onStatus(self):
[f721030]	422	"""
[f1f3e6a]	423	Display Invariant Details panel when clicking on Status button
[f721030]	424	"""
	425	self.detailsDialog.setModel(self.model)
	426	self.detailsDialog.showDialog()
[f1f3e6a]	427	self.cmdStatus.setEnabled(False)
[f721030]	428
[f1f3e6a]	429	def onHelp(self):
	430	""" Display help when clicking on Help button """
[e90988c]	431	treeLocation = "/user/sasgui/perspectives/invariant/invariant_help.html"
	432	self.parent.showHelp(treeLocation)
[f721030]	433
	434	def setupSlots(self):
[f1f3e6a]	435	""" """
	436	self.cmdCalculate.clicked.connect(self.calculateInvariant)
	437	self.cmdStatus.clicked.connect(self.onStatus)
	438	self.cmdHelp.clicked.connect(self.onHelp)
[f721030]	439
[f1f3e6a]	440	self.chkLowQ.stateChanged.connect(self.stateChanged)
	441	self.chkLowQ.stateChanged.connect(self.checkQExtrapolatedData)
[f721030]	442
[f1f3e6a]	443	self.chkHighQ.stateChanged.connect(self.stateChanged)
	444	self.chkHighQ.stateChanged.connect(self.checkQExtrapolatedData)
[f721030]	445
[f1f3e6a]	446	# slots for the Guinier and PowerLaw radio buttons at low Q
	447	# since they are not auto-exclusive
	448	self.rbGuinier.toggled.connect(self.lowGuinierAndPowerToggle)
	449
	450	self.rbPowerLawLowQ.toggled.connect(self.lowGuinierAndPowerToggle)
	451
	452	self.rbFitHighQ.toggled.connect(self.hiFitAndFixToggle)
	453
	454	self.rbFitLowQ.toggled.connect(self.lowFitAndFixToggle)
[f721030]	455
	456	self.model.itemChanged.connect(self.modelChanged)
	457
[f1f3e6a]	458	# update model from gui editing by users
	459	self.txtBackgd.textChanged.connect(self.updateFromGui)
	460
	461	self.txtScale.textChanged.connect(self.updateFromGui)
	462
	463	self.txtContrast.textChanged.connect(self.updateFromGui)
	464
	465	self.txtPorodCst.textChanged.connect(self.updateFromGui)
	466
	467	self.txtPowerLowQ.textChanged.connect(self.updateFromGui)
	468
	469	self.txtPowerHighQ.textChanged.connect(self.updateFromGui)
	470
	471	self.txtNptsLowQ.textChanged.connect(self.updateFromGui)
	472
	473	self.txtNptsHighQ.textChanged.connect(self.updateFromGui)
	474
	475	# check values of n_points compared to distribution length
	476	if self.txtNptsLowQ.isEnabled():
	477	self.txtNptsLowQ.textChanged.connect(self.checkLength)
	478
	479	if self.txtNptsHighQ.isEnabled():
	480	self.txtNptsHighQ.textChanged.connect(self.checkLength)
	481
	482	def stateChanged(self):
[f721030]	483	"""
[f1f3e6a]	484	Catch modifications from low- and high-Q extrapolation check boxes
[f721030]	485	"""
[f1f3e6a]	486	sender = self.sender()
	487
	488	itemf = QtGui.QStandardItem(str(sender.isChecked()).lower())
	489	if sender.text() == 'Enable Low-Q extrapolation':
	490	self.model.setItem(WIDGETS.W_ENABLE_LOWQ, itemf)
	491
	492	if sender.text() == 'Enable High-Q extrapolation':
	493	self.model.setItem(WIDGETS.W_ENABLE_HIGHQ, itemf)
	494
	495	def checkLength(self):
	496	"""
	497	Validators of number of points for extrapolation.
	498	Error if it is larger than the distribution length
	499	"""
[7c487846]	500	try:
	501	int_value = int(self.sender().text())
	502	except ValueError:
	503	self.sender().setStyleSheet(BG_RED)
	504	self.cmdCalculate.setEnabled(False)
	505	return
	506
[f1f3e6a]	507	if self._data:
[7c487846]	508	if len(self._data.x) < int_value:
	509	self.sender().setStyleSheet(BG_RED)
[f1f3e6a]	510	logging.warning('The number of points must be smaller than {}'.format(len(self._data.x)))
	511	self.cmdCalculate.setEnabled(False)
	512	else:
[7c487846]	513	self.sender().setStyleSheet(BG_WHITE)
[f1f3e6a]	514	self.cmdCalculate.setEnabled(True)
	515	else:
	516	# logging.info('no data is loaded')
	517	self.cmdCalculate.setEnabled(False)
	518
	519	def modelChanged(self, item):
	520	""" Update when model changed """
[f721030]	521	if item.row() == WIDGETS.W_ENABLE_LOWQ:
	522	toggle = (str(item.text()) == 'true')
	523	self._low_extrapolate = toggle
	524	self.lowQToggle(toggle)
	525	elif item.row() == WIDGETS.W_ENABLE_HIGHQ:
	526	toggle = (str(item.text()) == 'true')
	527	self._high_extrapolate = toggle
	528	self.highQToggle(toggle)
[f1f3e6a]	529
	530	def checkQExtrapolatedData(self):
[f721030]	531	"""
[f1f3e6a]	532	Match status of low or high-Q extrapolated data checkbox in
	533	DataExplorer with low or high-Q extrapolation checkbox in invariant
	534	panel
[f721030]	535	"""
[f1f3e6a]	536	# name to search in DataExplorer
	537	if 'Low' in str(self.sender().text()):
	538	name = "Low-Q extrapolation"
	539	if 'High' in str(self.sender().text()):
	540	name = "High-Q extrapolation"
[f721030]	541
[f1f3e6a]	542	GuiUtils.updateModelItemStatus(self._manager.filesWidget.model,
	543	self._path, name,
	544	self.sender().checkState())
	545
	546	def updateFromGui(self):
	547	""" Update model when new user inputs """
	548	possible_senders = ['txtBackgd', 'txtContrast', 'txtPorodCst',
	549	'txtScale', 'txtPowerLowQ', 'txtPowerHighQ',
	550	'txtNptsLowQ', 'txtNptsHighQ']
	551
	552	related_widgets = [WIDGETS.W_BACKGROUND, WIDGETS.W_CONTRAST,
	553	WIDGETS.W_POROD_CST, WIDGETS.W_SCALE,
	554	WIDGETS.W_LOWQ_POWER_VALUE, WIDGETS.W_HIGHQ_POWER_VALUE,
	555	WIDGETS.W_NPTS_LOWQ, WIDGETS.W_NPTS_HIGHQ]
	556
	557	related_internal_values = [self._background, self._contrast,
	558	self._porod, self._scale,
	559	self._low_power_value,
	560	self._high_power_value,
	561	self._low_points, self._high_points]
	562
	563	item = QtGui.QStandardItem(self.sender().text())
	564
	565	index_elt = possible_senders.index(self.sender().objectName())
	566
	567	self.model.setItem(related_widgets[index_elt], item)
[7c487846]	568	try:
	569	related_internal_values[index_elt] = float(self.sender().text())
	570	self.sender().setStyleSheet(BG_WHITE)
	571	self.cmdCalculate.setEnabled(True)
	572	except ValueError:
	573	# empty field, just skip
	574	self.sender().setStyleSheet(BG_RED)
	575	self.cmdCalculate.setEnabled(False)
[f1f3e6a]	576
	577	def lowGuinierAndPowerToggle(self, toggle):
[f721030]	578	"""
[f1f3e6a]	579	Guinier and Power radio buttons cannot be selected at the same time
	580	If Power is selected, Fit and Fix radio buttons are visible and
	581	Power line edit can be edited if Fix is selected
[f721030]	582	"""
[f1f3e6a]	583	if self.sender().text() == 'Guinier':
	584	self._low_guinier = toggle
	585
	586	toggle = not toggle
	587	self.rbPowerLawLowQ.setChecked(toggle)
	588
	589	self.rbFitLowQ.toggled.connect(self.lowFitAndFixToggle)
	590	self.rbFitLowQ.setVisible(toggle)
	591	self.rbFixLowQ.setVisible(toggle)
	592
	593	self.txtPowerLowQ.setEnabled(toggle and (not self._low_fit))
	594
	595	else:
	596	self._low_guinier = not toggle
	597
	598	self.rbGuinier.setChecked(not toggle)
	599
	600	self.rbFitLowQ.toggled.connect(self.lowFitAndFixToggle)
	601	self.rbFitLowQ.setVisible(toggle)
	602	self.rbFixLowQ.setVisible(toggle)
	603
	604	self.txtPowerLowQ.setEnabled(toggle and (not self._low_fit))
	605
	606	def lowFitAndFixToggle(self, toggle):
	607	""" Fit and Fix radiobuttons cannot be selected at the same time """
[f721030]	608	self._low_fit = toggle
[f1f3e6a]	609
[f721030]	610	toggle = not toggle
[f1f3e6a]	611	self.txtPowerLowQ.setEnabled(toggle)
[f721030]	612
	613	def hiFitAndFixToggle(self, toggle):
	614	"""
[f1f3e6a]	615	Enable editing of power exponent if Fix for high Q is checked
	616	Disable otherwise
[f721030]	617	"""
[f1f3e6a]	618	self.txtPowerHighQ.setEnabled(not toggle)
[f721030]	619
	620	def highQToggle(self, clicked):
[f1f3e6a]	621	""" Disable/enable High Q extrapolation """
	622	self.rbFitHighQ.setEnabled(clicked)
	623	self.rbFixHighQ.setEnabled(clicked)
	624	self.txtNptsHighQ.setEnabled(clicked)
	625	self.txtPowerHighQ.setEnabled(clicked)
[f721030]	626
	627	def lowQToggle(self, clicked):
[f1f3e6a]	628	""" Disable / enable Low Q extrapolation """
	629	self.rbGuinier.setEnabled(clicked)
	630	self.rbPowerLawLowQ.setEnabled(clicked)
	631	self.txtNptsLowQ.setEnabled(clicked)
[f721030]	632	# Enable subelements
[f1f3e6a]	633	self.rbFitLowQ.setVisible(self.rbPowerLawLowQ.isChecked())
	634	self.rbFixLowQ.setVisible(self.rbPowerLawLowQ.isChecked())
	635	self.rbFitLowQ.setEnabled(clicked) # and not self._low_guinier)
	636	self.rbFixLowQ.setEnabled(clicked) # and not self._low_guinier)
[f721030]	637
[f1f3e6a]	638	self.txtPowerLowQ.setEnabled(clicked
	639	and not self._low_guinier
	640	and not self._low_fit)
[f721030]	641
[f1f3e6a]	642	def setupModel(self):
	643	""" """
[f721030]	644	# filename
	645	item = QtGui.QStandardItem(self._path)
	646	self.model.setItem(WIDGETS.W_FILENAME, item)
	647
	648	# add Q parameters to the model
[469b4622]	649	qmin = 0.0
[f721030]	650	item = QtGui.QStandardItem(str(qmin))
	651	self.model.setItem(WIDGETS.W_QMIN, item)
[469b4622]	652	qmax = 0.0
	653	item = QtGui.QStandardItem(str(qmax))
[f721030]	654	self.model.setItem(WIDGETS.W_QMAX, item)
	655
	656	# add custom input params
	657	item = QtGui.QStandardItem(str(self._background))
	658	self.model.setItem(WIDGETS.W_BACKGROUND, item)
	659	item = QtGui.QStandardItem(str(self._contrast))
	660	self.model.setItem(WIDGETS.W_CONTRAST, item)
	661	item = QtGui.QStandardItem(str(self._scale))
	662	self.model.setItem(WIDGETS.W_SCALE, item)
[f1f3e6a]	663	# leave line edit empty if Porod constant not defined
	664	if self._porod != None:
	665	item = QtGui.QStandardItem(str(self._porod))
	666	else:
	667	item = QtGui.QStandardItem(str(''))
	668	self.model.setItem(WIDGETS.W_POROD_CST, item)
	669
[f721030]	670	# Dialog elements
	671	itemf = QtGui.QStandardItem("false")
	672	self.model.setItem(WIDGETS.W_ENABLE_HIGHQ, itemf)
	673	itemf = QtGui.QStandardItem("false")
	674	self.model.setItem(WIDGETS.W_ENABLE_LOWQ, itemf)
	675
[f1f3e6a]	676	item = QtGui.QStandardItem(str(NPOINTS_Q_INTERP))
[f721030]	677	self.model.setItem(WIDGETS.W_NPTS_LOWQ, item)
[f1f3e6a]	678	item = QtGui.QStandardItem(str(NPOINTS_Q_INTERP))
[f721030]	679	self.model.setItem(WIDGETS.W_NPTS_HIGHQ, item)
	680
	681	itemt = QtGui.QStandardItem("true")
	682	self.model.setItem(WIDGETS.W_LOWQ_GUINIER, itemt)
	683
	684	itemt = QtGui.QStandardItem("true")
	685	self.model.setItem(WIDGETS.W_LOWQ_FIT, itemt)
[f1f3e6a]	686	item = QtGui.QStandardItem(str(DEFAULT_POWER_LOW))
[f721030]	687	self.model.setItem(WIDGETS.W_LOWQ_POWER_VALUE, item)
	688
	689	itemt = QtGui.QStandardItem("true")
	690	self.model.setItem(WIDGETS.W_HIGHQ_FIT, itemt)
[f1f3e6a]	691	item = QtGui.QStandardItem(str(DEFAULT_POWER_LOW))
[f721030]	692	self.model.setItem(WIDGETS.W_HIGHQ_POWER_VALUE, item)
	693
	694	def setupMapper(self):
	695	# Set up the mapper.
[4992ff2]	696	self.mapper = QtWidgets.QDataWidgetMapper(self)
[f721030]	697	self.mapper.setOrientation(QtCore.Qt.Vertical)
	698	self.mapper.setModel(self.model)
	699
	700	# Filename
[f1f3e6a]	701	self.mapper.addMapping(self.txtName, WIDGETS.W_FILENAME)
	702
[f721030]	703	# Qmin/Qmax
[f1f3e6a]	704	self.mapper.addMapping(self.txtTotalQMin, WIDGETS.W_QMIN)
	705	self.mapper.addMapping(self.txtTotalQMax, WIDGETS.W_QMAX)
[f721030]	706
	707	# Background
[f1f3e6a]	708	self.mapper.addMapping(self.txtBackgd, WIDGETS.W_BACKGROUND)
	709
[f721030]	710	# Scale
[f1f3e6a]	711	self.mapper.addMapping(self.txtScale, WIDGETS.W_SCALE)
	712
[f721030]	713	# Contrast
[f1f3e6a]	714	self.mapper.addMapping(self.txtContrast, WIDGETS.W_CONTRAST)
[f721030]	715
[f1f3e6a]	716	# Porod constant
	717	self.mapper.addMapping(self.txtPorodCst, WIDGETS.W_POROD_CST)
[f721030]	718
[f1f3e6a]	719	# Lowq/Highq items
	720	self.mapper.addMapping(self.chkLowQ, WIDGETS.W_ENABLE_LOWQ)
	721	self.mapper.addMapping(self.chkHighQ, WIDGETS.W_ENABLE_HIGHQ)
[f721030]	722
[f1f3e6a]	723	self.mapper.addMapping(self.txtNptsLowQ, WIDGETS.W_NPTS_LOWQ)
	724	self.mapper.addMapping(self.rbGuinier, WIDGETS.W_LOWQ_GUINIER)
	725	self.mapper.addMapping(self.rbFitLowQ, WIDGETS.W_LOWQ_FIT)
	726	self.mapper.addMapping(self.txtPowerLowQ, WIDGETS.W_LOWQ_POWER_VALUE)
[f721030]	727
[f1f3e6a]	728	self.mapper.addMapping(self.txtNptsHighQ, WIDGETS.W_NPTS_HIGHQ)
	729	self.mapper.addMapping(self.rbFitHighQ, WIDGETS.W_HIGHQ_FIT)
	730	self.mapper.addMapping(self.txtPowerHighQ, WIDGETS.W_HIGHQ_POWER_VALUE)
[f721030]	731
	732	# Output
[f1f3e6a]	733	self.mapper.addMapping(self.txtVolFract, WIDGETS.W_VOLUME_FRACTION)
	734	self.mapper.addMapping(self.txtVolFractErr, WIDGETS.W_VOLUME_FRACTION_ERR)
	735	self.mapper.addMapping(self.txtSpecSurf, WIDGETS.W_SPECIFIC_SURFACE)
	736	self.mapper.addMapping(self.txtSpecSurfErr, WIDGETS.W_SPECIFIC_SURFACE_ERR)
	737	self.mapper.addMapping(self.txtInvariantTot, WIDGETS.W_INVARIANT)
	738	self.mapper.addMapping(self.txtInvariantTotErr, WIDGETS.W_INVARIANT_ERR)
[f721030]	739
[f1f3e6a]	740	self.mapper.toFirst()
[f721030]	741
[f1f3e6a]	742	def setData(self, data_item=None, is_batch=False):
[a281ab8]	743	"""
	744	Obtain a QStandardItem object and dissect it to get Data1D/2D
	745	Pass it over to the calculator
	746	"""
[f1f3e6a]	747	assert data_item is not None
	748
	749	if self.txtName.text() == data_item[0].text():
	750	logging.info('This file is already loaded in Invariant panel.')
	751	return
	752
[a281ab8]	753	if not isinstance(data_item, list):
	754	msg = "Incorrect type passed to the Invariant Perspective"
[b3e8629]	755	raise AttributeError(msg)
[a281ab8]	756
	757	if not isinstance(data_item[0], QtGui.QStandardItem):
	758	msg = "Incorrect type passed to the Invariant Perspective"
[b3e8629]	759	raise AttributeError(msg)
[a281ab8]	760
[f1f3e6a]	761	# only 1 file can be loaded
[a281ab8]	762	self._model_item = data_item[0]
	763
	764	# Extract data on 1st child - this is the Data1D/2D component
[8548d739]	765	data = GuiUtils.dataFromItem(self._model_item)
[7c487846]	766	self.model.item(WIDGETS.W_FILENAME).setData(self._model_item.text())
[f1f3e6a]	767	# update GUI and model with info from loaded data
	768	self.updateGuiFromFile(data=data)
[a281ab8]	769
[f1f3e6a]	770	def updateGuiFromFile(self, data=None):
[f721030]	771	"""
[f1f3e6a]	772	update display in GUI and plot
[f721030]	773	"""
[f1f3e6a]	774	self._data = data
	775
	776	# plot loaded file
	777	if not isinstance(self._data, Data1D):
	778	msg = "Error(s) occurred: Invariant cannot be computed with 2D data."
	779	raise AttributeError(msg)
	780
	781	try:
	782	filename = data.filename
	783	except:
	784	msg = 'No filename'
	785	raise ValueError(msg)
	786	try:
	787	qmin = min(self._data.x)
	788	qmax = max(self._data.x)
	789	except:
	790	msg = "Unable to find q min/max of \n data named %s" % \
	791	data.filename
	792	raise ValueError(msg)
	793
	794	# update model with input form files: filename, qmin, qmax
	795	self.model.item(WIDGETS.W_FILENAME).setText(filename)
	796	self.model.item(WIDGETS.W_QMIN).setText(str(qmin))
	797	self.model.item(WIDGETS.W_QMAX).setText(str(qmax))
	798	self._path = filename
	799
	800	# Calculate and add to GUI: volume fraction, invariant total,
	801	# and specific surface if porod checked
	802	self.calculateInvariant()
[f721030]	803
[5032ea68]	804	def allowBatch(self):
	805	"""
	806	Tell the caller that we don't accept multiple data instances
	807	"""
	808	return False

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SasView

source: sasview/src/sas/qtgui/Perspectives/Invariant/InvariantPerspective.py @ 01ef3f7

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