[c128284] | 1 | |
---|
| 2 | |
---|
[d7a39e5] | 3 | |
---|
| 4 | ################################################################################ |
---|
[78a205a] | 5 | # This software was developed by the University of Tennessee as part of the |
---|
| 6 | # Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
---|
| 7 | # project funded by the US National Science Foundation. |
---|
[d7a39e5] | 8 | # |
---|
[78a205a] | 9 | # See the license text in license.txt |
---|
[d7a39e5] | 10 | # |
---|
[78a205a] | 11 | # copyright 2009, University of Tennessee |
---|
[d7a39e5] | 12 | ################################################################################ |
---|
[d65a00a] | 13 | |
---|
| 14 | |
---|
[4e1c362] | 15 | import sys |
---|
[272d91e] | 16 | import wx |
---|
[4e1c362] | 17 | import copy |
---|
[4a2b054] | 18 | import logging |
---|
[79492222] | 19 | from sas.guiframe.gui_manager import MDIFrame |
---|
| 20 | from sas.guiframe.dataFitting import Data1D |
---|
| 21 | from sas.guiframe.events import NewPlotEvent |
---|
| 22 | from sas.guiframe.events import StatusEvent |
---|
| 23 | from sas.guiframe.gui_style import GUIFRAME_ID |
---|
[b9a5f0e] | 24 | from sas.perspectives.invariant.invariant_state import Reader as reader |
---|
[79492222] | 25 | from sas.dataloader.loader import Loader |
---|
[b9a5f0e] | 26 | from sas.perspectives.invariant.invariant_panel import InvariantPanel |
---|
[79492222] | 27 | from sas.guiframe.plugin_base import PluginBase |
---|
[d65a00a] | 28 | |
---|
| 29 | class Plugin(PluginBase): |
---|
[c128284] | 30 | """ |
---|
[d7a39e5] | 31 | This class defines the interface for invariant Plugin class |
---|
[78a205a] | 32 | that can be used by the gui_manager. |
---|
[c128284] | 33 | """ |
---|
[78a205a] | 34 | |
---|
[f21d496] | 35 | def __init__(self): |
---|
| 36 | PluginBase.__init__(self, name="Invariant") |
---|
[78a205a] | 37 | |
---|
| 38 | # dictionary containing data name and error on dy of that data |
---|
[c128284] | 39 | self.err_dy = {} |
---|
[78a205a] | 40 | |
---|
| 41 | # default state objects |
---|
| 42 | self.state_reader = None |
---|
[35f2f49] | 43 | self._extensions = '.inv' |
---|
[78a205a] | 44 | self.temp_state = None |
---|
| 45 | self.__data = None |
---|
| 46 | |
---|
[4e1c362] | 47 | # Log startup |
---|
| 48 | logging.info("Invariant plug-in started") |
---|
[78a205a] | 49 | |
---|
[35f2f49] | 50 | def get_data(self): |
---|
| 51 | """ |
---|
| 52 | """ |
---|
| 53 | return self.__data |
---|
[78a205a] | 54 | |
---|
[c128284] | 55 | def get_panels(self, parent): |
---|
| 56 | """ |
---|
[d7a39e5] | 57 | Create and return the list of wx.Panels for your plug-in. |
---|
| 58 | Define the plug-in perspective. |
---|
[78a205a] | 59 | |
---|
[d7a39e5] | 60 | Panels should inherit from DefaultPanel defined below, |
---|
| 61 | or should present the same interface. They must define |
---|
| 62 | "window_caption" and "window_name". |
---|
[78a205a] | 63 | |
---|
[d7a39e5] | 64 | :param parent: parent window |
---|
[78a205a] | 65 | |
---|
[d7a39e5] | 66 | :return: list of panels |
---|
[c128284] | 67 | """ |
---|
[78a205a] | 68 | # # Save a reference to the parent |
---|
[c128284] | 69 | self.parent = parent |
---|
[78a205a] | 70 | self.frame = MDIFrame(self.parent, None, 'None', (100, 200)) |
---|
| 71 | self.invariant_panel = InvariantPanel(parent=self.frame) |
---|
[ae84427] | 72 | self.frame.set_panel(self.invariant_panel) |
---|
| 73 | self._frame_set_helper() |
---|
[c128284] | 74 | self.invariant_panel.set_manager(manager=self) |
---|
[78a205a] | 75 | self.perspective.append(self.invariant_panel.window_name) |
---|
| 76 | # Create reader when fitting panel are created |
---|
| 77 | self.state_reader = reader(self.set_state) |
---|
| 78 | # append that reader to list of available reader |
---|
[4e1c362] | 79 | loader = Loader() |
---|
| 80 | loader.associate_file_reader(".inv", self.state_reader) |
---|
[78a205a] | 81 | # loader.associate_file_reader(".svs", self.state_reader) |
---|
[c128284] | 82 | # Return the list of panels |
---|
| 83 | return [self.invariant_panel] |
---|
[78a205a] | 84 | |
---|
[a07e72f] | 85 | def get_context_menu(self, plotpanel=None): |
---|
[c128284] | 86 | """ |
---|
[d7a39e5] | 87 | This method is optional. |
---|
[78a205a] | 88 | |
---|
| 89 | When the context menu of a plot is rendered, the |
---|
| 90 | get_context_menu method will be called to give you a |
---|
[d7a39e5] | 91 | chance to add a menu item to the context menu. |
---|
[78a205a] | 92 | |
---|
[d7a39e5] | 93 | A ref to a Graph object is passed so that you can |
---|
| 94 | investigate the plot content and decide whether you |
---|
[78a205a] | 95 | need to add items to the context menu. |
---|
| 96 | |
---|
[d7a39e5] | 97 | This method returns a list of menu items. |
---|
[78a205a] | 98 | Each item is itself a list defining the text to |
---|
[d7a39e5] | 99 | appear in the menu, a tool-tip help text, and a |
---|
| 100 | call-back method. |
---|
[78a205a] | 101 | |
---|
[d7a39e5] | 102 | :param graph: the Graph object to which we attach the context menu |
---|
[78a205a] | 103 | |
---|
[d7a39e5] | 104 | :return: a list of menu items with call-back function |
---|
[c128284] | 105 | """ |
---|
[a07e72f] | 106 | graph = plotpanel.graph |
---|
[c128284] | 107 | invariant_option = "Compute invariant" |
---|
[4a2b054] | 108 | invariant_hint = "Will displays the invariant panel for" |
---|
[76e894c] | 109 | invariant_hint += " further computation" |
---|
[78a205a] | 110 | |
---|
[a07e72f] | 111 | if graph.selected_plottable not in plotpanel.plots: |
---|
| 112 | return [] |
---|
| 113 | data = plotpanel.plots[graph.selected_plottable] |
---|
[78a205a] | 114 | |
---|
[ec1584e] | 115 | if issubclass(data.__class__, Data1D): |
---|
[78a205a] | 116 | if data.name != "$I_{obs}(q)$" and data.name != " $P_{fit}(r)$": |
---|
| 117 | return [[invariant_option, invariant_hint, self._compute_invariant]] |
---|
[a07e72f] | 118 | return [] |
---|
| 119 | |
---|
[78a205a] | 120 | def _compute_invariant(self, event): |
---|
[c128284] | 121 | """ |
---|
[d7a39e5] | 122 | Open the invariant panel to invariant computation |
---|
[c128284] | 123 | """ |
---|
| 124 | self.panel = event.GetEventObject() |
---|
[4a2b054] | 125 | Plugin.on_perspective(self, event=event) |
---|
[a07e72f] | 126 | id = self.panel.graph.selected_plottable |
---|
| 127 | data = self.panel.plots[self.panel.graph.selected_plottable] |
---|
| 128 | if data is None: |
---|
| 129 | return |
---|
| 130 | if not issubclass(data.__class__, Data1D): |
---|
| 131 | name = data.__class__.__name__ |
---|
| 132 | msg = "Invariant use only Data1D got: [%s] " % str(name) |
---|
[78a205a] | 133 | raise ValueError, msg |
---|
[a07e72f] | 134 | self.compute_helper(data=data) |
---|
[78a205a] | 135 | |
---|
[e88ebfd] | 136 | def set_data(self, data_list=None): |
---|
[f1e06a8e] | 137 | """ |
---|
| 138 | receive a list of data and compute invariant |
---|
| 139 | """ |
---|
[9cec2dd] | 140 | msg = "" |
---|
[a07e72f] | 141 | data = None |
---|
[14cd91b1] | 142 | if data_list is None: |
---|
| 143 | data_list = [] |
---|
[e88ebfd] | 144 | if len(data_list) >= 1: |
---|
| 145 | if len(data_list) == 1: |
---|
| 146 | data = data_list[0] |
---|
| 147 | else: |
---|
[9cec2dd] | 148 | data_1d_list = [] |
---|
| 149 | data_2d_list = [] |
---|
| 150 | error_msg = "" |
---|
| 151 | # separate data into data1d and data2d list |
---|
| 152 | for data in data_list: |
---|
| 153 | if data is not None: |
---|
| 154 | if issubclass(data.__class__, Data1D): |
---|
| 155 | data_1d_list.append(data) |
---|
| 156 | else: |
---|
| 157 | error_msg += " %s type %s \n" % (str(data.name), |
---|
[78a205a] | 158 | str(data.__class__.__name__)) |
---|
[9cec2dd] | 159 | data_2d_list.append(data) |
---|
| 160 | if len(data_2d_list) > 0: |
---|
| 161 | msg = "Invariant does not support the following data types:\n" |
---|
| 162 | msg += error_msg |
---|
| 163 | if len(data_1d_list) == 0: |
---|
[78a205a] | 164 | wx.PostEvent(self.parent, StatusEvent(status=msg, info='error')) |
---|
[9cec2dd] | 165 | return |
---|
| 166 | msg += "Invariant panel does not allow multiple data!\n" |
---|
[e88ebfd] | 167 | msg += "Please select one.\n" |
---|
[6813da7d] | 168 | if len(data_list) > 1: |
---|
| 169 | from invariant_widgets import DataDialog |
---|
| 170 | dlg = DataDialog(data_list=data_1d_list, text=msg) |
---|
| 171 | if dlg.ShowModal() == wx.ID_OK: |
---|
| 172 | data = dlg.get_data() |
---|
| 173 | else: |
---|
| 174 | data = None |
---|
| 175 | dlg.Destroy() |
---|
| 176 | |
---|
[e88ebfd] | 177 | if data is None: |
---|
[9cec2dd] | 178 | msg += "invariant receives no data. \n" |
---|
[78a205a] | 179 | wx.PostEvent(self.parent, StatusEvent(status=msg, info='error')) |
---|
[e88ebfd] | 180 | return |
---|
[9cec2dd] | 181 | if not issubclass(data.__class__, Data1D): |
---|
[78a205a] | 182 | msg += "invariant cannot be computed for data of " |
---|
| 183 | msg += "type %s\n" % (data.__class__.__name__) |
---|
| 184 | wx.PostEvent(self.parent, StatusEvent(status=msg, info='error')) |
---|
| 185 | return |
---|
[9cec2dd] | 186 | else: |
---|
[78a205a] | 187 | wx.PostEvent(self.parent, NewPlotEvent(plot=data, title=data.title)) |
---|
[e88ebfd] | 188 | try: |
---|
| 189 | self.compute_helper(data) |
---|
| 190 | except: |
---|
[9cec2dd] | 191 | msg = "Invariant Set_data: " + str(sys.exc_value) |
---|
[78a205a] | 192 | wx.PostEvent(self.parent, StatusEvent(status=msg, info="error")) |
---|
| 193 | else: |
---|
[a07e72f] | 194 | msg = "invariant cannot be computed for data of " |
---|
| 195 | msg += "type %s" % (data.__class__.__name__) |
---|
[78a205a] | 196 | wx.PostEvent(self.parent, StatusEvent(status=msg, info='error')) |
---|
| 197 | |
---|
[20b482f] | 198 | def delete_data(self, data_id): |
---|
| 199 | """ |
---|
| 200 | """ |
---|
[b24cfd9] | 201 | if self.__data is None: |
---|
| 202 | return |
---|
[20b482f] | 203 | for id in data_id: |
---|
| 204 | if id == self.__data.id: |
---|
| 205 | self.clear_panel() |
---|
[78a205a] | 206 | |
---|
[cb69775] | 207 | def clear_panel(self): |
---|
[a07e72f] | 208 | """ |
---|
| 209 | """ |
---|
[cb69775] | 210 | self.invariant_panel.clear_panel() |
---|
[78a205a] | 211 | |
---|
[343fdb6] | 212 | def compute_helper(self, data): |
---|
| 213 | """ |
---|
| 214 | """ |
---|
| 215 | if data is None: |
---|
[78a205a] | 216 | return |
---|
[f24925ab] | 217 | # set current data if not it's a state data |
---|
| 218 | if not self.invariant_panel.is_state_data: |
---|
[9c1f463] | 219 | # Store reference to data |
---|
| 220 | self.__data = data |
---|
| 221 | # Set the data set to be user for invariant calculation |
---|
[210ff4f] | 222 | self.invariant_panel.set_data(data=data) |
---|
[78a205a] | 223 | |
---|
[4e1c362] | 224 | def save_file(self, filepath, state=None): |
---|
| 225 | """ |
---|
| 226 | Save data in provided state object. |
---|
[78a205a] | 227 | |
---|
[4e1c362] | 228 | :param filepath: path of file to write to |
---|
[78a205a] | 229 | :param state: invariant state |
---|
| 230 | """ |
---|
[4e1c362] | 231 | # Write the state to file |
---|
| 232 | # First, check that the data is of the right type |
---|
| 233 | current_plottable = self.__data |
---|
| 234 | |
---|
[d4d78c9] | 235 | if issubclass(current_plottable.__class__, Data1D): |
---|
[4e1c362] | 236 | self.state_reader.write(filepath, current_plottable, state) |
---|
| 237 | else: |
---|
[4a2b054] | 238 | msg = "invariant.save_file: the data being saved is" |
---|
[78a205a] | 239 | msg += " not a sas.dataloader.data_info.Data1D object" |
---|
[4a2b054] | 240 | raise RuntimeError, msg |
---|
[4e1c362] | 241 | |
---|
[78a205a] | 242 | def set_state(self, state=None, datainfo=None): |
---|
[4e1c362] | 243 | """ |
---|
| 244 | Call-back method for the state reader. |
---|
[9b18735] | 245 | This method is called when a .inv/.svs file is loaded. |
---|
[78a205a] | 246 | |
---|
[4e1c362] | 247 | :param state: State object |
---|
| 248 | """ |
---|
[4da35bc] | 249 | self.temp_state = None |
---|
[4e1c362] | 250 | try: |
---|
[75fbd17] | 251 | if datainfo.__class__.__name__ == 'list': |
---|
| 252 | data = datainfo[0] |
---|
[cb69775] | 253 | else: |
---|
| 254 | data = datainfo |
---|
[75fbd17] | 255 | if data is None: |
---|
[4a2b054] | 256 | msg = "invariant.set_state: datainfo parameter cannot" |
---|
| 257 | msg += " be None in standalone mode" |
---|
| 258 | raise RuntimeError, msg |
---|
[04295ea] | 259 | # Make sure the user sees the invariant panel after loading |
---|
[78a205a] | 260 | # self.parent.set_perspective(self.perspective) |
---|
[04295ea] | 261 | self.on_perspective(event=None) |
---|
[75fbd17] | 262 | name = data.meta_data['invstate'].file |
---|
| 263 | data.meta_data['invstate'].file = name |
---|
| 264 | data.name = name |
---|
| 265 | data.filename = name |
---|
[04295ea] | 266 | |
---|
[78a205a] | 267 | data = self.parent.create_gui_data(data, None) |
---|
[75fbd17] | 268 | self.__data = data |
---|
| 269 | wx.PostEvent(self.parent, NewPlotEvent(plot=self.__data, |
---|
[78a205a] | 270 | reset=True, title=self.__data.title)) |
---|
[2f97794] | 271 | data_dict = {self.__data.id:self.__data} |
---|
| 272 | self.parent.add_data(data_list=data_dict) |
---|
[f24925ab] | 273 | # set state |
---|
| 274 | self.invariant_panel.is_state_data = True |
---|
[78a205a] | 275 | |
---|
[9b18735] | 276 | # Load the invariant states |
---|
[cb69775] | 277 | self.temp_state = state |
---|
[04295ea] | 278 | # Requires to have self.__data and self.temp_state first. |
---|
| 279 | self.on_set_state_helper(None) |
---|
[cefb3fb] | 280 | |
---|
[78a205a] | 281 | except: |
---|
[4e1c362] | 282 | logging.error("invariant.set_state: %s" % sys.exc_value) |
---|
[78a205a] | 283 | |
---|
[9b18735] | 284 | def on_set_state_helper(self, event=None): |
---|
[4da35bc] | 285 | """ |
---|
[9b18735] | 286 | Set the state when called by EVT_STATE_UPDATE event from guiframe |
---|
[78a205a] | 287 | after a .inv/.svs file is loaded |
---|
[4da35bc] | 288 | """ |
---|
[4a2b054] | 289 | self.invariant_panel.set_state(state=self.temp_state, |
---|
| 290 | data=self.__data) |
---|
[4da35bc] | 291 | self.temp_state = None |
---|
[78a205a] | 292 | |
---|
| 293 | |
---|
[2661d8b] | 294 | def plot_theory(self, data=None, name=None): |
---|
[c128284] | 295 | """ |
---|
[d7a39e5] | 296 | Receive a data set and post a NewPlotEvent to parent. |
---|
[78a205a] | 297 | |
---|
[d7a39e5] | 298 | :param data: extrapolated data to be plotted |
---|
| 299 | :param name: Data's name to use for the legend |
---|
[c128284] | 300 | """ |
---|
[78a205a] | 301 | # import copy |
---|
[2661d8b] | 302 | if data is None: |
---|
[a07e72f] | 303 | id = str(self.__data.id) + name |
---|
[e88ebfd] | 304 | group_id = self.__data.group_id |
---|
[78a205a] | 305 | wx.PostEvent(self.parent, NewPlotEvent(id=id, group_id=group_id, action='Remove')) |
---|
[a07e72f] | 306 | return |
---|
[78a205a] | 307 | |
---|
[a07e72f] | 308 | new_plot = Data1D(x=[], y=[], dy=None) |
---|
| 309 | new_plot.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM |
---|
| 310 | scale = self.invariant_panel.get_scale() |
---|
| 311 | background = self.invariant_panel.get_background() |
---|
[78a205a] | 312 | |
---|
[a07e72f] | 313 | if scale != 0: |
---|
| 314 | # Put back the sacle and bkg for plotting |
---|
[78a205a] | 315 | data.y = (data.y + background) / scale |
---|
[a07e72f] | 316 | new_plot = Data1D(x=data.x, y=data.y, dy=None) |
---|
| 317 | new_plot.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM |
---|
[2661d8b] | 318 | else: |
---|
[a07e72f] | 319 | msg = "Scale can not be zero." |
---|
| 320 | raise ValueError, msg |
---|
[78a205a] | 321 | if len(new_plot.x) == 0: |
---|
[a07e72f] | 322 | return |
---|
[78a205a] | 323 | |
---|
[c128284] | 324 | new_plot.name = name |
---|
[2661d8b] | 325 | new_plot.xaxis(self.__data._xaxis, self.__data._xunit) |
---|
| 326 | new_plot.yaxis(self.__data._yaxis, self.__data._yunit) |
---|
| 327 | new_plot.group_id = self.__data.group_id |
---|
[a07e72f] | 328 | new_plot.id = str(self.__data.id) + name |
---|
[f1e06a8e] | 329 | new_plot.title = self.__data.title |
---|
[4e1c362] | 330 | # Save theory_data in a state |
---|
| 331 | if data != None: |
---|
| 332 | name_head = name.split('-') |
---|
[4a2b054] | 333 | if name_head[0] == 'Low': |
---|
[4e1c362] | 334 | self.invariant_panel.state.theory_lowQ = copy.deepcopy(new_plot) |
---|
[4a2b054] | 335 | elif name_head[0] == 'High': |
---|
[78a205a] | 336 | self.invariant_panel.state.theory_highQ = copy.deepcopy(new_plot) |
---|
| 337 | |
---|
[27f4bee] | 338 | self.parent.update_theory(data_id=self.__data.id, theory=new_plot) |
---|
[4a2b054] | 339 | wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, |
---|
[f1e06a8e] | 340 | title=self.__data.title)) |
---|
[78a205a] | 341 | |
---|
[18d0bba] | 342 | def plot_data(self, scale, background): |
---|
[6d55d81] | 343 | """ |
---|
[d7a39e5] | 344 | replot the current data if the user enters a new scale or background |
---|
[6d55d81] | 345 | """ |
---|
[18d0bba] | 346 | new_plot = scale * self.__data - background |
---|
| 347 | new_plot.name = self.__data.name |
---|
| 348 | new_plot.group_id = self.__data.group_id |
---|
[78a205a] | 349 | new_plot.id = self.__data.id |
---|
[f1e06a8e] | 350 | new_plot.title = self.__data.title |
---|
[78a205a] | 351 | |
---|
| 352 | # Save data in a state: but seems to never happen |
---|
[4e1c362] | 353 | if new_plot != None: |
---|
| 354 | self.invariant_panel.state.data = copy.deepcopy(new_plot) |
---|
[4a2b054] | 355 | wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, |
---|
[f1e06a8e] | 356 | title=new_plot.title)) |
---|
[78a205a] | 357 | |
---|