fitting.py @ 7cd87c2

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.1.1release-4.1.2release-4.2.2release_4.0.1ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload

Last change on this file since 7cd87c2 was 39356b5, checked in by Doucet, Mathieu <doucetm@…>, 10 years ago
The mechanism using set_default_perspective in plugins is broken.
Property mode set to `100644`
File size: 86.8 KB

Line
1	"""
2	Fitting perspective
3	"""
4	################################################################################
5	#This software was developed by the University of Tennessee as part of the
6	#Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
7	#project funded by the US National Science Foundation.
8	#
9	#See the license text in license.txt
10	#
11	#copyright 2009, University of Tennessee
12	################################################################################
13	import re
14	import sys
15	import os
16	import wx
17	import logging
18	import numpy
19	import time
20	from copy import deepcopy
21	import models
22
23	from sas.dataloader.loader import Loader
24	from sas.guiframe.dataFitting import Data2D
25	from sas.guiframe.dataFitting import Data1D
26	from sas.guiframe.dataFitting import check_data_validity
27	from sas.guiframe.events import NewPlotEvent
28	from sas.guiframe.events import StatusEvent
29	from sas.guiframe.events import EVT_SLICER_PANEL
30	from sas.guiframe.events import EVT_SLICER_PARS_UPDATE
31	from sas.guiframe.gui_style import GUIFRAME_ID
32	from sas.guiframe.plugin_base import PluginBase
33	from sas.guiframe.data_processor import BatchCell
34	from sas.fit.Fitting import Fit
35	from sas.perspectives.fitting.console import ConsoleUpdate
36	from sas.perspectives.fitting.fitproblem import FitProblemDictionary
37	from sas.perspectives.fitting.fitpanel import FitPanel
38	from sas.perspectives.fitting.resultpanel import ResultPanel, PlotResultEvent
39
40	from sas.perspectives.fitting.fit_thread import FitThread
41	from sas.perspectives.fitting.pagestate import Reader
42	from sas.perspectives.fitting.fitpage import Chi2UpdateEvent
43	from sas.perspectives.calculator.model_editor import TextDialog
44	from sas.perspectives.calculator.model_editor import EditorWindow
45	from sas.guiframe.gui_manager import MDIFrame
46
47	MAX_NBR_DATA = 4
48
49	(PageInfoEvent, EVT_PAGE_INFO) = wx.lib.newevent.NewEvent()
50
51
52	if sys.platform == "win32":
53	ON_MAC = False
54	else:
55	ON_MAC = True
56
57
58
59	class Plugin(PluginBase):
60	"""
61	Fitting plugin is used to perform fit
62	"""
63	def __init__(self, standalone=False):
64	PluginBase.__init__(self, name="Fitting", standalone=standalone)
65
66	#list of panel to send to guiframe
67	self.mypanels = []
68	# reference to the current running thread
69	self.calc_2D = None
70	self.calc_1D = None
71
72	self.color_dict = {}
73
74	self.fit_thread_list = {}
75	self.residuals = None
76	self.weight = None
77	self.fit_panel = None
78	self.plot_panel = None
79	# Start with a good default
80	self.elapsed = 0.022
81	self.fit_panel = None
82	#Flag to let the plug-in know that it is running stand alone
83	self.standalone = True
84	## dictionary of page closed and id
85	self.closed_page_dict = {}
86	## Fit engine
87	self._fit_engine = 'bumps'
88	self._gui_engine = None
89	## Relative error desired in the sum of squares (float)
90	self.batch_reset_flag = True
91	#List of selected data
92	self.selected_data_list = []
93	## list of slicer panel created to display slicer parameters and results
94	self.slicer_panels = []
95	# model 2D view
96	self.model2D_id = None
97	#keep reference of the simultaneous fit page
98	self.sim_page = None
99	self.sim_menu = None
100	self.batch_page = None
101	self.batch_menu = None
102	self.index_model = 0
103	self.test_model_color = None
104	#Create a reader for fit page's state
105	self.state_reader = None
106	self._extensions = '.fitv'
107	self.menu1 = None
108	self.new_model_frame = None
109
110	self.temp_state = []
111	self.state_index = 0
112	self.sfile_ext = None
113	# take care of saving data, model and page associated with each other
114	self.page_finder = {}
115	# Log startup
116	logging.info("Fitting plug-in started")
117	self.batch_capable = self.get_batch_capable()
118
119	def get_batch_capable(self):
120	"""
121	Check if the plugin has a batch capability
122	"""
123	return True
124
125	def create_fit_problem(self, page_id):
126	"""
127	Given an ID create a fitproblem container
128	"""
129	self.page_finder[page_id] = FitProblemDictionary()
130
131	def delete_fit_problem(self, page_id):
132	"""
133	Given an ID create a fitproblem container
134	"""
135	if page_id in self.page_finder.iterkeys():
136	del self.page_finder[page_id]
137
138	def add_color(self, color, id):
139	"""
140	adds a color as a key with a plot id as its value to a dictionary
141	"""
142	self.color_dict[id] = color
143
144	def on_batch_selection(self, flag):
145	"""
146	switch the the notebook of batch mode or not
147	"""
148	self.batch_on = flag
149	if self.fit_panel is not None:
150	self.fit_panel.batch_on = self.batch_on
151
152	def populate_menu(self, owner):
153	"""
154	Create a menu for the Fitting plug-in
155
156	:param id: id to create a menu
157	:param owner: owner of menu
158
159	:return: list of information to populate the main menu
160
161	"""
162	#Menu for fitting
163	self.menu1 = wx.Menu()
164	id1 = wx.NewId()
165	simul_help = "Add new fit panel"
166	self.menu1.Append(id1, '&New Fit Page', simul_help)
167	wx.EVT_MENU(owner, id1, self.on_add_new_page)
168	self.menu1.AppendSeparator()
169	self.id_simfit = wx.NewId()
170	simul_help = "Constrained or Simultaneous Fit"
171	self.menu1.Append(self.id_simfit, '&Constrained or Simultaneous Fit', simul_help)
172	wx.EVT_MENU(owner, self.id_simfit, self.on_add_sim_page)
173	self.sim_menu = self.menu1.FindItemById(self.id_simfit)
174	self.sim_menu.Enable(False)
175	#combined Batch
176	self.id_batchfit = wx.NewId()
177	batch_help = "Combined Batch"
178	self.menu1.Append(self.id_batchfit, '&Combine Batch Fit', batch_help)
179	wx.EVT_MENU(owner, self.id_batchfit, self.on_add_sim_page)
180	self.batch_menu = self.menu1.FindItemById(self.id_batchfit)
181	self.batch_menu.Enable(False)
182	self.menu1.AppendSeparator()
183
184	self.menu1.AppendSeparator()
185	self.id_bumps_options = wx.NewId()
186	bopts_help = "Fitting options"
187	self.menu1.Append(self.id_bumps_options, 'Fit &Options', bopts_help)
188	wx.EVT_MENU(owner, self.id_bumps_options, self.on_bumps_options)
189	self.bumps_options_menu = self.menu1.FindItemById(self.id_bumps_options)
190	self.bumps_options_menu.Enable(True)
191
192	self.id_result_panel = wx.NewId()
193	self.menu1.Append(self.id_result_panel, "Fit Results", "Show fit results panel")
194	wx.EVT_MENU(owner, self.id_result_panel, lambda ev: self.result_frame.Show())
195	self.menu1.AppendSeparator()
196
197	self.id_reset_flag = wx.NewId()
198	resetf_help = "BatchFit: If checked, the initial param values will be "
199	resetf_help += "propagated from the previous results. "
200	resetf_help += "Otherwise, the same initial param values will be used "
201	resetf_help += "for all fittings."
202	self.menu1.AppendCheckItem(self.id_reset_flag,
203	"Chain Fitting [BatchFit Only]",
204	resetf_help)
205	wx.EVT_MENU(owner, self.id_reset_flag, self.on_reset_batch_flag)
206	chain_menu = self.menu1.FindItemById(self.id_reset_flag)
207	chain_menu.Check(not self.batch_reset_flag)
208	chain_menu.Enable(self.batch_on)
209
210	self.menu1.AppendSeparator()
211	self.edit_model_menu = wx.Menu()
212	# Find and put files name in menu
213	try:
214	self.set_edit_menu(owner=owner)
215	except:
216	raise
217
218	self.id_edit = wx.NewId()
219	editmodel_help = "Edit customized model sample file"
220	self.menu1.AppendMenu(self.id_edit, "Edit Custom Model",
221	self.edit_model_menu, editmodel_help)
222	#create menubar items
223	return [(self.menu1, self.sub_menu)]
224
225	def edit_custom_model(self, event):
226	"""
227	Get the python editor panel
228	"""
229	id = event.GetId()
230	label = self.edit_menu.GetLabel(id)
231	from sas.perspectives.calculator.pyconsole import PyConsole
232	filename = os.path.join(models.find_plugins_dir(), label)
233	frame = PyConsole(parent=self.parent, manager=self,
234	panel=self.fit_panel,
235	title='Advanced Custom Model Editor',
236	filename=filename)
237	self.put_icon(frame)
238	frame.Show(True)
239
240	def delete_custom_model(self, event):
241	"""
242	Delete custom model file
243	"""
244	id = event.GetId()
245	label = self.delete_menu.GetLabel(id)
246	toks = os.path.splitext(label)
247	path = os.path.join(models.find_plugins_dir(), toks[0])
248	try:
249	for ext in ['.py', '.pyc']:
250	p_path = path + ext
251	os.remove(p_path)
252	self.update_custom_combo()
253	if os.path.isfile(p_path):
254	msg = "Sorry! Could not be able to delete the default "
255	msg += "custom model... \n"
256	msg += "Please manually remove the files (.py, .pyc) "
257	msg += "in the 'plugin_models' folder \n"
258	msg += "inside of the SasView application, "
259	msg += "and try it again."
260	wx.MessageBox(msg, 'Info')
261	#wx.PostEvent(self.parent, StatusEvent(status=msg, type='stop',
262	# info='warning'))
263	else:
264	self.delete_menu.Delete(id)
265	for item in self.edit_menu.GetMenuItems():
266	if item.GetLabel() == label:
267	self.edit_menu.DeleteItem(item)
268	msg = "The custom model, %s, has been deleted."% label
269	wx.PostEvent(self.parent, StatusEvent(status=msg,
270	type='stop', info='info'))
271	break
272	except:
273	msg ='Delete Error: \nCould not delete the file; Check if in use.'
274	wx.MessageBox(msg, 'Error')
275
276	def make_sum_model(self, event):
277	"""
278	Edit summodel template and make one
279	"""
280	id = event.GetId()
281	model_manager = models.ModelManager()
282	model_list = model_manager.get_model_name_list()
283	plug_dir = models.find_plugins_dir()
284	textdial = TextDialog(None, self, -1, 'Easy Sum/Multi(p1, p2) Editor',
285	model_list, plug_dir)
286	self.put_icon(textdial)
287	textdial.ShowModal()
288	textdial.Destroy()
289
290	def make_new_model(self, event):
291	"""
292	Make new model
293	"""
294	if self.new_model_frame != None:
295	self.new_model_frame.Show(False)
296	self.new_model_frame.Show(True)
297	else:
298	id = event.GetId()
299	dir_path = models.find_plugins_dir()
300	title = "New Custom Model Function"
301	self.new_model_frame = EditorWindow(parent=self, base=self,
302	path=dir_path, title=title)
303	self.put_icon(self.new_model_frame)
304	self.new_model_frame.Show(True)
305
306	def update_custom_combo(self):
307	"""
308	Update custom model list in the fitpage combo box
309	"""
310	custom_model = 'Customized Models'
311	try:
312	# Update edit menus
313	self.set_edit_menu_helper(self.parent, self.edit_custom_model)
314	self.set_edit_menu_helper(self.parent, self.delete_custom_model)
315	temp = self.fit_panel.reset_pmodel_list()
316	if temp:
317	# Set the new custom model list for all fit pages
318	for uid, page in self.fit_panel.opened_pages.iteritems():
319	if hasattr(page, "formfactorbox"):
320	page.model_list_box = temp
321	current_val = page.formfactorbox.GetLabel()
322	#if page.plugin_rbutton.GetValue():
323	mod_cat = page.categorybox.GetStringSelection()
324	if mod_cat == custom_model:
325	#pos = page.formfactorbox.GetSelection()
326	page._show_combox_helper()
327	new_val = page.formfactorbox.GetLabel()
328	if current_val != new_val and new_val != '':
329	page.formfactorbox.SetLabel(new_val)
330	else:
331	page.formfactorbox.SetLabel(current_val)
332	except:
333	pass
334
335
336	def set_edit_menu(self, owner):
337	"""
338	Set list of the edit model menu labels
339	"""
340	id = wx.NewId()
341	#new_model_menu = wx.Menu()
342	self.edit_model_menu.Append(id, 'New',
343	'Add a new model function')
344	wx.EVT_MENU(owner, id, self.make_new_model)
345	id = wx.NewId()
346	self.edit_model_menu.Append(id, 'Sum\|Multi(p1, p2)',
347	'Sum of two model functions')
348	wx.EVT_MENU(owner, id, self.make_sum_model)
349	e_id = wx.NewId()
350	self.edit_menu = wx.Menu()
351	self.edit_model_menu.AppendMenu(e_id,
352	'Advanced', self.edit_menu)
353	self.set_edit_menu_helper(owner, self.edit_custom_model)
354
355	d_id = wx.NewId()
356	self.delete_menu = wx.Menu()
357	self.edit_model_menu.AppendMenu(d_id,
358	'Delete', self.delete_menu)
359	self.set_edit_menu_helper(owner, self.delete_custom_model)
360
361	def set_edit_menu_helper(self, owner=None, menu=None):
362	"""
363	help for setting list of the edit model menu labels
364	"""
365	if menu == None:
366	menu = self.edit_custom_model
367	list_fnames = os.listdir(models.find_plugins_dir())
368	list_fnames.sort()
369	for f_item in list_fnames:
370	name = os.path.basename(f_item)
371	toks = os.path.splitext(name)
372	if toks[-1] == '.py' and not toks[0] == '__init__':
373	if menu == self.edit_custom_model:
374	if toks[0] == 'easy_sum_of_p1_p2':
375	continue
376	submenu = self.edit_menu
377	else:
378	submenu = self.delete_menu
379	has_file = False
380	for item in submenu.GetMenuItems():
381	if name == submenu.GetLabel(item.GetId()):
382	has_file = True
383	if not has_file:
384	id = wx.NewId()
385	submenu.Append(id, name)
386	wx.EVT_MENU(owner, id, menu)
387	has_file = False
388
389	def put_icon(self, frame):
390	"""
391	Put icon in the frame title bar
392	"""
393	if hasattr(frame, "IsIconized"):
394	if not frame.IsIconized():
395	try:
396	icon = self.parent.GetIcon()
397	frame.SetIcon(icon)
398	except:
399	pass
400
401	def on_add_sim_page(self, event):
402	"""
403	Create a page to access simultaneous fit option
404	"""
405	id = event.GetId()
406	caption = "Const & Simul Fit"
407	page = self.sim_page
408	if id == self.id_batchfit:
409	caption = "Combined Batch"
410	page = self.batch_page
411
412	def set_focus_page(page):
413	page.Show(True)
414	page.Refresh()
415	page.SetFocus()
416	#self.parent._mgr.Update()
417	msg = "%s already opened\n" % str(page.window_caption)
418	wx.PostEvent(self.parent, StatusEvent(status=msg))
419
420	if page != None:
421	return set_focus_page(page)
422	if caption == "Const & Simul Fit":
423	self.sim_page = self.fit_panel.add_sim_page(caption=caption)
424	else:
425	self.batch_page = self.fit_panel.add_sim_page(caption=caption)
426
427	def help(self, evt):
428	"""
429	Show a general help dialog.
430	"""
431	from help_panel import HelpWindow
432	frame = HelpWindow(None, -1, 'HelpWindow')
433	if hasattr(frame, "IsIconized"):
434	if not frame.IsIconized():
435	try:
436	icon = self.parent.GetIcon()
437	frame.SetIcon(icon)
438	except:
439	pass
440	frame.Show(True)
441
442	def get_context_menu(self, plotpanel=None):
443	"""
444	Get the context menu items available for P(r).them allow fitting option
445	for Data2D and Data1D only.
446
447	:param graph: the Graph object to which we attach the context menu
448
449	:return: a list of menu items with call-back function
450
451	:note: if Data1D was generated from Theory1D
452	the fitting option is not allowed
453
454	"""
455	self.plot_panel = plotpanel
456	graph = plotpanel.graph
457	fit_option = "Select data for fitting"
458	fit_hint = "Dialog with fitting parameters "
459
460	if graph.selected_plottable not in plotpanel.plots:
461	return []
462	item = plotpanel.plots[graph.selected_plottable]
463	if item.__class__.__name__ is "Data2D":
464	if hasattr(item, "is_data"):
465	if item.is_data:
466	return [[fit_option, fit_hint, self._onSelect]]
467	else:
468	return []
469	return [[fit_option, fit_hint, self._onSelect]]
470	else:
471
472	# if is_data is true , this in an actual data loaded
473	#else it is a data created from a theory model
474	if hasattr(item, "is_data"):
475	if item.is_data:
476	return [[fit_option, fit_hint, self._onSelect]]
477	else:
478	return []
479	return [[fit_option, fit_hint, self._onSelect]]
480	return []
481
482	def get_panels(self, parent):
483	"""
484	Create and return a list of panel objects
485	"""
486	self.parent = parent
487	#self.parent.Bind(EVT_FITSTATE_UPDATE, self.on_set_state_helper)
488	# Creation of the fit panel
489	self.frame = MDIFrame(self.parent, None, 'None', (100, 200))
490	self.fit_panel = FitPanel(parent=self.frame, manager=self)
491	self.frame.set_panel(self.fit_panel)
492	self._frame_set_helper()
493	self.on_add_new_page(event=None)
494	#Set the manager for the main panel
495	self.fit_panel.set_manager(self)
496	# List of windows used for the perspective
497	self.perspective = []
498	self.perspective.append(self.fit_panel.window_name)
499
500	self.result_frame = MDIFrame(self.parent, None, ResultPanel.window_caption, (220, 200))
501	self.result_panel = ResultPanel(parent=self.result_frame, manager=self)
502	self.perspective.append(self.result_panel.window_name)
503
504	#index number to create random model name
505	self.index_model = 0
506	self.index_theory = 0
507	self.parent.Bind(EVT_SLICER_PANEL, self._on_slicer_event)
508	self.parent.Bind(EVT_SLICER_PARS_UPDATE, self._onEVT_SLICER_PANEL)
509	#self.parent._mgr.Bind(wx.aui.EVT_AUI_PANE_CLOSE,self._onclearslicer)
510	#Create reader when fitting panel are created
511	self.state_reader = Reader(self.set_state)
512	#append that reader to list of available reader
513	loader = Loader()
514	loader.associate_file_reader(".fitv", self.state_reader)
515	#Send the fitting panel to guiframe
516	self.mypanels.append(self.fit_panel)
517	self.mypanels.append(self.result_panel)
518	return self.mypanels
519
520	def clear_panel(self):
521	"""
522	"""
523	self.fit_panel.clear_panel()
524
525	def delete_data(self, data):
526	"""
527	delete the given data from panel
528	"""
529	self.fit_panel.delete_data(data)
530
531	def set_data(self, data_list=None):
532	"""
533	receive a list of data to fit
534	"""
535	if data_list is None:
536	data_list = []
537	selected_data_list = []
538	if self.batch_on:
539	page = self.add_fit_page(data=data_list)
540	else:
541	if len(data_list) > MAX_NBR_DATA:
542	from fitting_widgets import DataDialog
543	dlg = DataDialog(data_list=data_list, nb_data=MAX_NBR_DATA)
544	if dlg.ShowModal() == wx.ID_OK:
545	selected_data_list = dlg.get_data()
546	dlg.Destroy()
547
548	else:
549	selected_data_list = data_list
550	try:
551	group_id = wx.NewId()
552	for data in selected_data_list:
553	if data is not None:
554	# 2D has no same group_id
555	if data.__class__.__name__ == 'Data2D':
556	group_id = wx.NewId()
557	data.group_id = group_id
558	if group_id not in data.list_group_id:
559	data.list_group_id.append(group_id)
560	page = self.add_fit_page(data=[data])
561	except:
562	msg = "Fitting Set_data: " + str(sys.exc_value)
563	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error"))
564
565	def set_theory(self, theory_list=None):
566	"""
567	"""
568	#set the model state for a given theory_state:
569	for item in theory_list:
570	try:
571	_, theory_state = item
572	self.fit_panel.set_model_state(theory_state)
573	except:
574	msg = "Fitting: cannot deal with the theory received"
575	logging.error("set_theory " + msg + "\n" + str(sys.exc_value))
576	wx.PostEvent(self.parent,
577	StatusEvent(status=msg, info="error"))
578
579	def set_state(self, state=None, datainfo=None, format=None):
580	"""
581	Call-back method for the fit page state reader.
582	This method is called when a .fitv/.svs file is loaded.
583
584	: param state: PageState object
585	: param datainfo: data
586	"""
587	#state = self.state_reader.get_state()
588	if state != None:
589	state = state.clone()
590	# store fitting state in temp_state
591	self.temp_state.append(state)
592	else:
593	self.temp_state = []
594	# index to start with for a new set_state
595	self.state_index = 0
596	# state file format
597	self.sfile_ext = format
598
599	self.on_set_state_helper(event=None)
600
601	def on_set_state_helper(self, event=None):
602	"""
603	Set_state_helper. This actually sets state
604	after plotting data from state file.
605
606	: event: FitStateUpdateEvent called
607	by dataloader.plot_data from guiframe
608	"""
609	if len(self.temp_state) == 0:
610	if self.state_index == 0 and len(self.mypanels) <= 0 \
611	and self.sfile_ext == '.svs':
612	self.temp_state = []
613	self.state_index = 0
614	return
615
616	try:
617	# Load fitting state
618	state = self.temp_state[self.state_index]
619	#panel state should have model selection to set_state
620	if state.formfactorcombobox != None:
621	#set state
622	data = self.parent.create_gui_data(state.data)
623	data.group_id = state.data.group_id
624	self.parent.add_data(data_list={data.id: data})
625	wx.PostEvent(self.parent, NewPlotEvent(plot=data,
626	title=data.title))
627	#need to be fix later make sure we are sendind guiframe.data
628	#to panel
629	state.data = data
630	page = self.fit_panel.set_state(state)
631	else:
632	#just set data because set_state won't work
633	data = self.parent.create_gui_data(state.data)
634	data.group_id = state.data.group_id
635	self.parent.add_data(data_list={data.id: data})
636	wx.PostEvent(self.parent, NewPlotEvent(plot=data,
637	title=data.title))
638	page = self.add_fit_page([data])
639	caption = page.window_caption
640	self.store_data(uid=page.uid, data_list=page.get_data_list(),
641	caption=caption)
642	self.mypanels.append(page)
643
644	# get ready for the next set_state
645	self.state_index += 1
646
647	#reset state variables to default when all set_state is finished.
648	if len(self.temp_state) == self.state_index:
649
650	self.temp_state = []
651	#self.state_index = 0
652	# Make sure the user sees the fitting panel after loading
653	#self.parent.set_perspective(self.perspective)
654	self.on_perspective(event=None)
655	except:
656	self.state_index = 0
657	self.temp_state = []
658	raise
659
660	def set_param2fit(self, uid, param2fit):
661	"""
662	Set the list of param names to fit for fitprobelm
663	"""
664	self.page_finder[uid].set_param2fit(param2fit)
665
666	def set_graph_id(self, uid, graph_id):
667	"""
668	Set graph_id for fitprobelm
669	"""
670	self.page_finder[uid].set_graph_id(graph_id)
671
672	def get_graph_id(self, uid):
673	"""
674	Set graph_id for fitprobelm
675	"""
676	return self.page_finder[uid].get_graph_id()
677
678	def save_fit_state(self, filepath, fitstate):
679	"""
680	save fit page state into file
681	"""
682	self.state_reader.write(filename=filepath, fitstate=fitstate)
683
684	def set_fit_weight(self, uid, flag, is2d=False, fid=None):
685	"""
686	Set the fit weights of a given page for all
687	its data by default. If fid is provide then set the range
688	only for the data with fid as id
689	:param uid: id corresponding to a fit page
690	:param fid: id corresponding to a fit problem (data, model)
691	:param weight: current dy data
692	"""
693	if uid in self.page_finder.keys():
694	self.page_finder[uid].set_weight(flag=flag, is2d=is2d)
695
696	def set_fit_range(self, uid, qmin, qmax, fid=None):
697	"""
698	Set the fitting range of a given page for all
699	its data by default. If fid is provide then set the range
700	only for the data with fid as id
701	:param uid: id corresponding to a fit page
702	:param fid: id corresponding to a fit problem (data, model)
703	:param qmin: minimum value of the fit range
704	:param qmax: maximum value of the fit range
705	"""
706	if uid in self.page_finder.keys():
707	self.page_finder[uid].set_range(qmin=qmin, qmax=qmax, fid=fid)
708
709	def schedule_for_fit(self, value=0, uid=None):
710	"""
711	Set the fit problem field to 0 or 1 to schedule that problem to fit.
712	Schedule the specified fitproblem or get the fit problem related to
713	the current page and set value.
714	:param value: integer 0 or 1
715	:param uid: the id related to a page contaning fitting information
716	"""
717	if uid in self.page_finder.keys():
718	self.page_finder[uid].schedule_tofit(value)
719
720	def get_page_finder(self):
721	"""
722	return self.page_finder used also by simfitpage.py
723	"""
724	return self.page_finder
725
726	def set_page_finder(self, modelname, names, values):
727	"""
728	Used by simfitpage.py to reset a parameter given the string constrainst.
729
730	:param modelname: the name ot the model for with the parameter
731	has to reset
732	:param value: can be a string in this case.
733	:param names: the paramter name
734	"""
735	sim_page_id = self.sim_page.uid
736	for uid, value in self.page_finder.iteritems():
737	if uid != sim_page_id and uid != self.batch_page.uid:
738	list = value.get_model()
739	model = list[0]
740	if model.name == modelname:
741	value.set_model_param(names, values)
742	break
743
744	def split_string(self, item):
745	"""
746	receive a word containing dot and split it. used to split parameterset
747	name into model name and parameter name example: ::
748
749	paramaterset (item) = M1.A
750	Will return model_name = M1 , parameter name = A
751
752	"""
753	if item.find(".") >= 0:
754	param_names = re.split("\.", item)
755	model_name = param_names[0]
756	##Assume max len is 3; eg., M0.radius.width
757	if len(param_names) == 3:
758	param_name = param_names[1] + "." + param_names[2]
759	else:
760	param_name = param_names[1]
761	return model_name, param_name
762
763	def on_bumps_options(self, event=None):
764	from bumps.gui.fit_dialog import OpenFitOptions
765	OpenFitOptions()
766
767	def stop_fit(self, uid):
768	"""
769	Stop the fit engine
770	"""
771	if uid in self.fit_thread_list.keys():
772	calc_fit = self.fit_thread_list[uid]
773	if calc_fit is not None and calc_fit.isrunning():
774	calc_fit.stop()
775	msg = "Fit stop!"
776	wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop"))
777	del self.fit_thread_list[uid]
778	#set the fit button label of page when fit stop is trigger from
779	#simultaneous fit pane
780	sim_flag = self.sim_page is not None and uid == self.sim_page.uid
781	batch_flag = self.batch_page is not None and uid == self.batch_page.uid
782	if sim_flag or batch_flag:
783	for uid, value in self.page_finder.iteritems():
784	if value.get_scheduled() == 1:
785	if uid in self.fit_panel.opened_pages.keys():
786	panel = self.fit_panel.opened_pages[uid]
787	panel._on_fit_complete()
788
789	def set_smearer(self, uid, smearer, fid, qmin=None, qmax=None, draw=True,
790	enable_smearer=False):
791	"""
792	Get a smear object and store it to a fit problem of fid as id. If proper
793	flag is enable , will plot the theory with smearing information.
794
795	:param smearer: smear object to allow smearing data of id fid
796	:param enable_smearer: Define whether or not all (data, model) contained
797	in the structure of id uid will be smeared before fitting.
798	:param qmin: the maximum value of the theory plotting range
799	:param qmax: the maximum value of the theory plotting range
800	:param draw: Determine if the theory needs to be plot
801	"""
802	if uid not in self.page_finder.keys():
803	return
804	self.page_finder[uid].enable_smearing(flag=enable_smearer)
805	self.page_finder[uid].set_smearer(smearer, fid=fid)
806	if draw:
807	## draw model 1D with smeared data
808	data = self.page_finder[uid].get_fit_data(fid=fid)
809	if data is None:
810	msg = "set_mearer requires at least data.\n"
811	msg += "Got data = %s .\n" % str(data)
812	return
813	#raise ValueError, msg
814	model = self.page_finder[uid].get_model(fid=fid)
815	if model is None:
816	return
817	enable1D = issubclass(data.__class__, Data1D)
818	enable2D = issubclass(data.__class__, Data2D)
819	## if user has already selected a model to plot
820	## redraw the model with data smeared
821	smear = self.page_finder[uid].get_smearer(fid=fid)
822
823	# compute weight for the current data
824	weight = self.page_finder[uid].get_weight(fid=fid)
825
826	self.draw_model(model=model, data=data, page_id=uid, smearer=smear,
827	enable1D=enable1D, enable2D=enable2D,
828	qmin=qmin, qmax=qmax, weight=weight)
829	self._mac_sleep(0.2)
830
831	def _mac_sleep(self, sec=0.2):
832	"""
833	Give sleep to MAC
834	"""
835	if ON_MAC:
836	time.sleep(sec)
837
838	def draw_model(self, model, page_id, data=None, smearer=None,
839	enable1D=True, enable2D=False,
840	state=None,
841	fid=None,
842	toggle_mode_on=False,
843	qmin=None, qmax=None,
844	update_chisqr=True, weight=None, source='model'):
845	"""
846	Draw model.
847
848	:param model: the model to draw
849	:param name: the name of the model to draw
850	:param data: the data on which the model is based to be drawn
851	:param description: model's description
852	:param enable1D: if true enable drawing model 1D
853	:param enable2D: if true enable drawing model 2D
854	:param qmin: Range's minimum value to draw model
855	:param qmax: Range's maximum value to draw model
856	:param qstep: number of step to divide the x and y-axis
857	:param update_chisqr: update chisqr [bool]
858
859	"""
860	#self.weight = weight
861	if issubclass(data.__class__, Data1D) or not enable2D:
862	## draw model 1D with no loaded data
863	self._draw_model1D(model=model,
864	data=data,
865	page_id=page_id,
866	enable1D=enable1D,
867	smearer=smearer,
868	qmin=qmin,
869	qmax=qmax,
870	fid=fid,
871	weight=weight,
872	toggle_mode_on=toggle_mode_on,
873	state=state,
874	update_chisqr=update_chisqr,
875	source=source)
876	else:
877	## draw model 2D with no initial data
878	self._draw_model2D(model=model,
879	page_id=page_id,
880	data=data,
881	enable2D=enable2D,
882	smearer=smearer,
883	qmin=qmin,
884	qmax=qmax,
885	fid=fid,
886	weight=weight,
887	state=state,
888	toggle_mode_on=toggle_mode_on,
889	update_chisqr=update_chisqr,
890	source=source)
891
892	def onFit(self, uid):
893	"""
894	Get series of data, model, associates parameters and range and send then
895	to series of fit engines. Fit data and model, display result to
896	corresponding panels.
897	:param uid: id related to the panel currently calling this fit function.
898	"""
899	if uid is None: raise RuntimeError("no page to fit") # Should never happen
900
901	sim_page_uid = getattr(self.sim_page, 'uid', None)
902	batch_page_uid = getattr(self.batch_page, 'uid', None)
903
904	if uid == sim_page_uid:
905	fit_type = 'simultaneous'
906	elif uid == batch_page_uid:
907	fit_type = 'combined_batch'
908	else:
909	fit_type = 'single'
910
911	fitter_list = []
912	sim_fitter = None
913	if fit_type == 'simultaneous':
914	#simulatanous fit only one engine need to be created
915	sim_fitter = Fit(self._fit_engine)
916	sim_fitter.fitter_id = self.sim_page.uid
917	fitter_list.append(sim_fitter)
918
919	self.current_pg = None
920	list_page_id = []
921	fit_id = 0
922	for page_id, page_info in self.page_finder.iteritems():
923	# For simulfit (uid give with None), do for-loop
924	# if uid is specified (singlefit), do it only on the page.
925	if page_id in (sim_page_uid, batch_page_uid): continue
926	if fit_type == "single" and page_id != uid: continue
927
928	try:
929	if page_info.get_scheduled() == 1:
930	page_info.nbr_residuals_computed = 0
931	page = self.fit_panel.get_page_by_id(page_id)
932	self.set_fit_weight(uid=page.uid,
933	flag=page.get_weight_flag(),
934	is2d=page._is_2D())
935	if not page.param_toFit:
936	msg = "No fitting parameters for %s"%page.window_caption
937	wx.PostEvent(page.parent.parent,
938	StatusEvent(status=msg, info="error",
939	type="stop"))
940	return False
941	if not page._update_paramv_on_fit():
942	msg = "Fitting range or parameter values are"
943	msg += " invalid in %s" % \
944	page.window_caption
945	wx.PostEvent(page.parent.parent,
946	StatusEvent(status=msg, info="error",
947	type="stop"))
948	return False
949
950	pars = [str(element[1]) for element in page.param_toFit]
951	fitproblem_list = page_info.values()
952	for fitproblem in fitproblem_list:
953	if sim_fitter is None:
954	fitter = Fit(self._fit_engine)
955	fitter.fitter_id = page_id
956	fitter_list.append(fitter)
957	else:
958	fitter = sim_fitter
959	self._add_problem_to_fit(fitproblem=fitproblem,
960	pars=pars,
961	fitter=fitter,
962	fit_id=fit_id)
963	fit_id += 1
964	list_page_id.append(page_id)
965	page_info.clear_model_param()
966	except KeyboardInterrupt:
967	msg = "Fitting terminated"
968	wx.PostEvent(self.parent, StatusEvent(status=msg, info="info",
969	type="stop"))
970	return True
971	except:
972	msg = "Fitting error: %s" % str(sys.exc_value)
973	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error",
974	type="stop"))
975	return False
976	## If a thread is already started, stop it
977	#if self.calc_fit!= None and self.calc_fit.isrunning():
978	# self.calc_fit.stop()
979	msg = "Fitting is in progress..."
980	wx.PostEvent(self.parent, StatusEvent(status=msg, type="progress"))
981
982	#Handler used for fit engine displayed message
983	handler = ConsoleUpdate(parent=self.parent,
984	manager=self,
985	improvement_delta=0.1)
986	self._mac_sleep(0.2)
987
988	# batch fit
989	batch_inputs = {}
990	batch_outputs = {}
991	if fit_type == "simultaneous":
992	page = self.sim_page
993	elif fit_type == "combined_batch":
994	page = self.batch_page
995	else:
996	page = self.fit_panel.get_page_by_id(uid)
997	if page.batch_on:
998	calc_fit = FitThread(handler=handler,
999	fn=fitter_list,
1000	pars=pars,
1001	batch_inputs=batch_inputs,
1002	batch_outputs=batch_outputs,
1003	page_id=list_page_id,
1004	completefn=self._batch_fit_complete,
1005	reset_flag=self.batch_reset_flag)
1006	else:
1007	## Perform more than 1 fit at the time
1008	calc_fit = FitThread(handler=handler,
1009	fn=fitter_list,
1010	batch_inputs=batch_inputs,
1011	batch_outputs=batch_outputs,
1012	page_id=list_page_id,
1013	updatefn=handler.update_fit,
1014	completefn=self._fit_completed)
1015	#self.fit_thread_list[current_page_id] = calc_fit
1016	self.fit_thread_list[uid] = calc_fit
1017	calc_fit.queue()
1018	calc_fit.ready(2.5)
1019	msg = "Fitting is in progress..."
1020	wx.PostEvent(self.parent, StatusEvent(status=msg, type="progress"))
1021
1022	return True
1023
1024	def remove_plot(self, uid, fid=None, theory=False):
1025	"""
1026	remove model plot when a fit page is closed
1027	:param uid: the id related to the fitpage to close
1028	:param fid: the id of the fitproblem(data, model, range,etc)
1029	"""
1030	if uid not in self.page_finder.keys():
1031	return
1032	fitproblemList = self.page_finder[uid].get_fit_problem(fid)
1033	for fitproblem in fitproblemList:
1034	data = fitproblem.get_fit_data()
1035	model = fitproblem.get_model()
1036	plot_id = None
1037	if model is not None:
1038	plot_id = data.id + model.name
1039	if theory:
1040	plot_id = data.id + model.name
1041	group_id = data.group_id
1042	wx.PostEvent(self.parent, NewPlotEvent(id=plot_id,
1043	group_id=group_id,
1044	action='remove'))
1045
1046	def store_data(self, uid, data_list=None, caption=None):
1047	"""
1048	Recieve a list of data and store them ans well as a caption of
1049	the fit page where they come from.
1050	:param uid: if related to a fit page
1051	:param data_list: list of data to fit
1052	:param caption: caption of the window related to these data
1053	"""
1054	if data_list is None:
1055	data_list = []
1056
1057	self.page_finder[uid].set_fit_data(data=data_list)
1058	if caption is not None:
1059	self.page_finder[uid].set_fit_tab_caption(caption=caption)
1060
1061	def on_add_new_page(self, event=None):
1062	"""
1063	ask fit panel to create a new empty page
1064	"""
1065	try:
1066	page = self.fit_panel.add_empty_page()
1067	# add data associated to the page created
1068	if page != None:
1069	wx.PostEvent(self.parent, StatusEvent(status="Page Created",
1070	info="info"))
1071	else:
1072	msg = "Page was already Created"
1073	wx.PostEvent(self.parent, StatusEvent(status=msg,
1074	info="warning"))
1075	except:
1076	msg = "Creating Fit page: %s"%sys.exc_value
1077	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error"))
1078
1079	def add_fit_page(self, data):
1080	"""
1081	given a data, ask to the fitting panel to create a new fitting page,
1082	get this page and store it into the page_finder of this plug-in
1083	:param data: is a list of data
1084	"""
1085	page = self.fit_panel.set_data(data)
1086	# page could be None when loading state files
1087	if page == None:
1088	return page
1089	#append Data1D to the panel containing its theory
1090	#if theory already plotted
1091	if page.uid in self.page_finder:
1092	data = page.get_data()
1093	theory_data = self.page_finder[page.uid].get_theory_data(data.id)
1094	if issubclass(data.__class__, Data2D):
1095	data.group_id = wx.NewId()
1096	if theory_data is not None:
1097	group_id = str(page.uid) + " Model1D"
1098	wx.PostEvent(self.parent,
1099	NewPlotEvent(group_id=group_id,
1100	action="delete"))
1101	self.parent.update_data(prev_data=theory_data,
1102	new_data=data)
1103	else:
1104	if theory_data is not None:
1105	group_id = str(page.uid) + " Model2D"
1106	data.group_id = theory_data.group_id
1107	wx.PostEvent(self.parent,
1108	NewPlotEvent(group_id=group_id,
1109	action="delete"))
1110	self.parent.update_data(prev_data=theory_data,
1111	new_data=data)
1112	self.store_data(uid=page.uid, data_list=page.get_data_list(),
1113	caption=page.window_caption)
1114	if self.sim_page is not None and not self.batch_on:
1115	self.sim_page.draw_page()
1116	if self.batch_page is not None and self.batch_on:
1117	self.batch_page.draw_page()
1118
1119	return page
1120
1121	def _onEVT_SLICER_PANEL(self, event):
1122	"""
1123	receive and event telling to update a panel with a name starting with
1124	event.panel_name. this method update slicer panel
1125	for a given interactor.
1126
1127	:param event: contains type of slicer , paramaters for updating
1128	the panel and panel_name to find the slicer 's panel concerned.
1129	"""
1130	event.panel_name
1131	for item in self.parent.panels:
1132	name = event.panel_name
1133	if self.parent.panels[item].window_caption.startswith(name):
1134	self.parent.panels[item].set_slicer(event.type, event.params)
1135
1136	#self.parent._mgr.Update()
1137
1138	def _closed_fitpage(self, event):
1139	"""
1140	request fitpanel to close a given page when its unique data is removed
1141	from the plot. close fitpage only when the a loaded data is removed
1142	"""
1143	if event is None or event.data is None:
1144	return
1145	if hasattr(event.data, "is_data"):
1146	if not event.data.is_data or \
1147	event.data.__class__.__name__ == "Data1D":
1148	self.fit_panel.close_page_with_data(event.data)
1149
1150	def _reset_schedule_problem(self, value=0, uid=None):
1151	"""
1152	unschedule or schedule all fitproblem to be fit
1153	"""
1154	# case that uid is not specified
1155	if uid == None:
1156	for page_id in self.page_finder.keys():
1157	self.page_finder[page_id].schedule_tofit(value)
1158	# when uid is given
1159	else:
1160	if uid in self.page_finder.keys():
1161	self.page_finder[uid].schedule_tofit(value)
1162
1163	def _add_problem_to_fit(self, fitproblem, pars, fitter, fit_id):
1164	"""
1165	Create and set fit engine with series of data and model
1166	:param pars: list of fittable parameters
1167	:param fitter_list: list of fit engine
1168	:param value: structure storing data mapped to their model, range etc.
1169	"""
1170	data = fitproblem.get_fit_data()
1171	model = fitproblem.get_model()
1172	smearer = fitproblem.get_smearer()
1173	qmin, qmax = fitproblem.get_range()
1174
1175	#Extra list of parameters and their constraints
1176	listOfConstraint = []
1177	param = fitproblem.get_model_param()
1178	if len(param) > 0:
1179	for item in param:
1180	## check if constraint
1181	if item[0] != None and item[1] != None:
1182	listOfConstraint.append((item[0], item[1]))
1183	new_model = model
1184	fitter.set_model(new_model, fit_id, pars, data=data,
1185	constraints=listOfConstraint)
1186	fitter.set_data(data=data, id=fit_id, smearer=smearer, qmin=qmin,
1187	qmax=qmax)
1188	fitter.select_problem_for_fit(id=fit_id, value=1)
1189
1190	def _onSelect(self, event):
1191	"""
1192	when Select data to fit a new page is created .Its reference is
1193	added to self.page_finder
1194	"""
1195	panel = self.plot_panel
1196	if panel == None:
1197	raise ValueError, "Fitting:_onSelect: NonType panel"
1198	Plugin.on_perspective(self, event=event)
1199	self.select_data(panel)
1200
1201	def select_data(self, panel):
1202	"""
1203	"""
1204	for plottable in panel.graph.plottables:
1205	if plottable.__class__.__name__ in ["Data1D", "Theory1D"]:
1206	data_id = panel.graph.selected_plottable
1207	if plottable == panel.plots[data_id]:
1208	data = plottable
1209	self.add_fit_page(data=[data])
1210	return
1211	else:
1212	data = plottable
1213	self.add_fit_page(data=[data])
1214
1215	def update_fit(self, result=None, msg=""):
1216	"""
1217	"""
1218	print "update_fit result", result
1219
1220	def _batch_fit_complete(self, result, pars, page_id,
1221	batch_outputs, batch_inputs, elapsed=None):
1222	"""
1223	Display fit result in batch
1224	:param result: list of objects received fromt fit engines
1225	:param pars: list of fitted parameters names
1226	:param page_id: list of page ids which called fit function
1227	:param elapsed: time spent at the fitting level
1228	"""
1229	self._mac_sleep(0.2)
1230	uid = page_id[0]
1231	if uid in self.fit_thread_list.keys():
1232	del self.fit_thread_list[uid]
1233
1234	self._update_fit_button(page_id)
1235	t1 = time.time()
1236	str_time = time.strftime("%a, %d %b %Y %H:%M:%S ", time.localtime(t1))
1237	msg = "Fit completed on %s \n" % str_time
1238	msg += "Duration time: %s s.\n" % str(elapsed)
1239	wx.PostEvent(self.parent, StatusEvent(status=msg, info="info",
1240	type="stop"))
1241
1242	if batch_outputs is None:
1243	batch_outputs = {}
1244
1245	# format batch_outputs
1246	batch_outputs["Chi2"] = []
1247	#Don't like these loops
1248	# Need to create dictionary of all fitted parameters
1249	# since the number of parameters can differ between each fit result
1250	for list_res in result:
1251	for res in list_res:
1252	model, data = res.inputs[0]
1253	if model is not None and hasattr(model, "model"):
1254	model = model.model
1255	#get all fittable parameters of the current model
1256	for param in model.getParamList():
1257	if param not in batch_outputs.keys():
1258	batch_outputs[param] = []
1259	for param in model.getDispParamList():
1260	if not model.is_fittable(param) and \
1261	param in batch_outputs.keys():
1262	del batch_outputs[param]
1263	# Add fitted parameters and their error
1264	for param in res.param_list:
1265	if param not in batch_outputs.keys():
1266	batch_outputs[param] = []
1267	err_param = "error on %s" % str(param)
1268	if err_param not in batch_inputs.keys():
1269	batch_inputs[err_param] = []
1270	msg = ""
1271	for list_res in result:
1272	for res in list_res:
1273	pid = res.fitter_id
1274	model, data = res.inputs[0]
1275	correct_result = False
1276	if model is not None and hasattr(model, "model"):
1277	model = model.model
1278	if data is not None and hasattr(data, "sas_data"):
1279	data = data.sas_data
1280
1281	is_data2d = issubclass(data.__class__, Data2D)
1282	#check consistency of arrays
1283	if not is_data2d:
1284	if len(res.theory) == len(res.index[res.index]) and \
1285	len(res.index) == len(data.y):
1286	correct_result = True
1287	else:
1288	copy_data = deepcopy(data)
1289	new_theory = copy_data.data
1290	new_theory[res.index] = res.theory
1291	new_theory[res.index == False] = numpy.nan
1292	correct_result = True
1293	#get all fittable parameters of the current model
1294	param_list = model.getParamList()
1295	for param in model.getDispParamList():
1296	if not model.is_fittable(param) and \
1297	param in param_list:
1298	param_list.remove(param)
1299	if not correct_result or res.fitness is None or \
1300	not numpy.isfinite(res.fitness) or \
1301	numpy.any(res.pvec == None) or not \
1302	numpy.all(numpy.isfinite(res.pvec)):
1303	data_name = str(None)
1304	if data is not None:
1305	data_name = str(data.name)
1306	model_name = str(None)
1307	if model is not None:
1308	model_name = str(model.name)
1309	msg += "Data %s and Model %s did not fit.\n" % (data_name,
1310	model_name)
1311	ERROR = numpy.NAN
1312	cell = BatchCell()
1313	cell.label = res.fitness
1314	cell.value = res.fitness
1315	batch_outputs["Chi2"].append(ERROR)
1316	for param in param_list:
1317	# save value of fixed parameters
1318	if param not in res.param_list:
1319	batch_outputs[str(param)].append(ERROR)
1320	else:
1321	#save only fitted values
1322	batch_outputs[param].append(ERROR)
1323	batch_inputs["error on %s" % str(param)].append(ERROR)
1324	else:
1325	# ToDo: Why sometimes res.pvec comes with numpy.float64?
1326	# Need to fix it within ScipyEngine
1327	if res.pvec.__class__ == numpy.float64:
1328	res.pvec = [res.pvec]
1329
1330	cell = BatchCell()
1331	cell.label = res.fitness
1332	cell.value = res.fitness
1333	batch_outputs["Chi2"].append(cell)
1334	# add parameters to batch_results
1335	for param in param_list:
1336	# save value of fixed parameters
1337	if param not in res.param_list:
1338	batch_outputs[str(param)].append(model.getParam(param))
1339	else:
1340	index = res.param_list.index(param)
1341	#save only fitted values
1342	batch_outputs[param].append(res.pvec[index])
1343	if res.stderr is not None and \
1344	len(res.stderr) == len(res.param_list):
1345	item = res.stderr[index]
1346	batch_inputs["error on %s" % param].append(item)
1347	else:
1348	batch_inputs["error on %s" % param].append('-')
1349	model.setParam(param, res.pvec[index])
1350	#fill the batch result with emtpy value if not in the current
1351	#model
1352	EMPTY = "-"
1353	for key in batch_outputs.keys():
1354	if key not in param_list and key not in ["Chi2", "Data"]:
1355	batch_outputs[key].append(EMPTY)
1356
1357	self.page_finder[pid].set_batch_result(batch_inputs=batch_inputs,
1358	batch_outputs=batch_outputs)
1359
1360	cpage = self.fit_panel.get_page_by_id(pid)
1361	cpage._on_fit_complete()
1362	self.page_finder[pid][data.id].set_result(res)
1363	fitproblem = self.page_finder[pid][data.id]
1364	qmin, qmax = fitproblem.get_range()
1365	plot_result = False
1366	if correct_result:
1367	if not is_data2d:
1368	self._complete1D(x=data.x[res.index], y=res.theory, page_id=pid,
1369	elapsed=None,
1370	index=res.index, model=model,
1371	weight=None, fid=data.id,
1372	toggle_mode_on=False, state=None,
1373	data=data, update_chisqr=False,
1374	source='fit', plot_result=plot_result)
1375	else:
1376	self._complete2D(image=new_theory, data=data,
1377	model=model,
1378	page_id=pid, elapsed=None,
1379	index=res.index,
1380	qmin=qmin,
1381	qmax=qmax, fid=data.id, weight=None,
1382	toggle_mode_on=False, state=None,
1383	update_chisqr=False,
1384	source='fit', plot_result=plot_result)
1385	self.on_set_batch_result(page_id=pid,
1386	fid=data.id,
1387	batch_outputs=batch_outputs,
1388	batch_inputs=batch_inputs)
1389
1390	wx.PostEvent(self.parent, StatusEvent(status=msg, error="info",
1391	type="stop"))
1392	# Remove parameters that are not shown
1393	cpage = self.fit_panel.get_page_by_id(uid)
1394	tbatch_outputs = {}
1395	shownkeystr = cpage.get_copy_params()
1396	for key in batch_outputs.keys():
1397	if key in ["Chi2", "Data"] or shownkeystr.count(key) > 0:
1398	tbatch_outputs[key] = batch_outputs[key]
1399
1400	wx.CallAfter(self.parent.on_set_batch_result, tbatch_outputs,
1401	batch_inputs, self.sub_menu)
1402
1403	def on_set_batch_result(self, page_id, fid, batch_outputs, batch_inputs):
1404	"""
1405	"""
1406	pid = page_id
1407	if fid not in self.page_finder[pid]:
1408	return
1409	fitproblem = self.page_finder[pid][fid]
1410	index = self.page_finder[pid].nbr_residuals_computed - 1
1411	residuals = fitproblem.get_residuals()
1412	theory_data = fitproblem.get_theory_data()
1413	data = fitproblem.get_fit_data()
1414	model = fitproblem.get_model()
1415	#fill batch result information
1416	if "Data" not in batch_outputs.keys():
1417	batch_outputs["Data"] = []
1418	from sas.guiframe.data_processor import BatchCell
1419	cell = BatchCell()
1420	cell.label = data.name
1421	cell.value = index
1422
1423	if theory_data != None:
1424	#Suucessful fit
1425	theory_data.id = wx.NewId()
1426	theory_data.name = model.name + "[%s]" % str(data.name)
1427	if issubclass(theory_data.__class__, Data2D):
1428	group_id = wx.NewId()
1429	theory_data.group_id = group_id
1430	if group_id not in theory_data.list_group_id:
1431	theory_data.list_group_id.append(group_id)
1432
1433	try:
1434	# associate residuals plot
1435	if issubclass(residuals.__class__, Data2D):
1436	group_id = wx.NewId()
1437	residuals.group_id = group_id
1438	if group_id not in residuals.list_group_id:
1439	residuals.list_group_id.append(group_id)
1440	batch_outputs["Chi2"][index].object = [residuals]
1441	except:
1442	pass
1443
1444	cell.object = [data, theory_data]
1445	batch_outputs["Data"].append(cell)
1446	for key, value in data.meta_data.iteritems():
1447	if key not in batch_inputs.keys():
1448	batch_inputs[key] = []
1449	#if key.lower().strip() != "loader":
1450	batch_inputs[key].append(value)
1451	param = "temperature"
1452	if hasattr(data.sample, param):
1453	if param not in batch_inputs.keys():
1454	batch_inputs[param] = []
1455	batch_inputs[param].append(data.sample.temperature)
1456
1457	def _fit_completed(self, result, page_id, batch_outputs,
1458	batch_inputs=None, pars=None, elapsed=None):
1459	"""
1460	Display result of the fit on related panel(s).
1461	:param result: list of object generated when fit ends
1462	:param pars: list of names of parameters fitted
1463	:param page_id: list of page ids which called fit function
1464	:param elapsed: time spent at the fitting level
1465	"""
1466	t1 = time.time()
1467	str_time = time.strftime("%a, %d %b %Y %H:%M:%S ", time.localtime(t1))
1468	msg = "Fit completed on %s \n" % str_time
1469	msg += "Duration time: %s s.\n" % str(elapsed)
1470	wx.PostEvent(self.parent, StatusEvent(status=msg, info="info",
1471	type="stop"))
1472	wx.PostEvent(self.result_panel, PlotResultEvent(result=result))
1473	self._update_fit_button(page_id)
1474	result = result[0]
1475	self.fit_thread_list = {}
1476	if page_id is None:
1477	page_id = []
1478	## fit more than 1 model at the same time
1479	self._mac_sleep(0.2)
1480	try:
1481	index = 0
1482	for uid in page_id:
1483	res = result[index]
1484	if res.fitness is None or \
1485	not numpy.isfinite(res.fitness) or \
1486	numpy.any(res.pvec == None) or \
1487	not numpy.all(numpy.isfinite(res.pvec)):
1488	msg = "Fitting did not converge!!!"
1489	wx.PostEvent(self.parent,
1490	StatusEvent(status=msg,
1491	info="warning",
1492	type="stop"))
1493	self._update_fit_button(page_id)
1494	else:
1495	#set the panel when fit result are float not list
1496	if res.pvec.__class__ == numpy.float64:
1497	pvec = [res.pvec]
1498	else:
1499	pvec = res.pvec
1500	if res.stderr.__class__ == numpy.float64:
1501	stderr = [res.stderr]
1502	else:
1503	stderr = res.stderr
1504	cpage = self.fit_panel.get_page_by_id(uid)
1505	# Make sure we got all results
1506	#(CallAfter is important to MAC)
1507	try:
1508	#if res != None:
1509	wx.CallAfter(cpage.onsetValues, res.fitness,
1510	res.param_list,
1511	pvec, stderr)
1512	index += 1
1513	wx.CallAfter(cpage._on_fit_complete)
1514	except KeyboardInterrupt:
1515	msg = "Singular point: Fitting Stoped."
1516	wx.PostEvent(self.parent, StatusEvent(status=msg,
1517	info="info",
1518	type="stop"))
1519	except:
1520	msg = "Singular point: Fitting Error occurred."
1521	wx.PostEvent(self.parent, StatusEvent(status=msg,
1522	info="error",
1523	type="stop"))
1524
1525	except:
1526	msg = "Fit completed but Following"
1527	msg += " warning occurred: %s" % sys.exc_value
1528	wx.PostEvent(self.parent, StatusEvent(status=msg, info="warning",
1529	type="stop"))
1530
1531	def _update_fit_button(self, page_id):
1532	"""
1533	Update Fit button when fit stopped
1534
1535	: parameter page_id: fitpage where the button is
1536	"""
1537	if page_id.__class__.__name__ != 'list':
1538	page_id = [page_id]
1539	for uid in page_id:
1540	page = self.fit_panel.get_page_by_id(uid)
1541	page._on_fit_complete()
1542
1543	def _on_show_panel(self, event):
1544	"""
1545	"""
1546	pass
1547
1548	def on_reset_batch_flag(self, event):
1549	"""
1550	Set batch_reset_flag
1551	"""
1552	event.Skip()
1553	if self.menu1 == None:
1554	return
1555	menu_item = self.menu1.FindItemById(self.id_reset_flag)
1556	flag = menu_item.IsChecked()
1557	if not flag:
1558	menu_item.Check(False)
1559	self.batch_reset_flag = True
1560	else:
1561	menu_item.Check(True)
1562	self.batch_reset_flag = False
1563
1564	## post a message to status bar
1565	msg = "Set Chain Fitting: %s" % str(not self.batch_reset_flag)
1566	wx.PostEvent(self.parent,
1567	StatusEvent(status=msg))
1568
1569
1570	def _on_slicer_event(self, event):
1571	"""
1572	Receive a panel as event and send it to guiframe
1573
1574	:param event: event containing a panel
1575
1576	"""
1577	if event.panel is not None:
1578	new_panel = event.panel
1579	self.slicer_panels.append(event.panel)
1580	# Set group ID if available
1581	event_id = self.parent.popup_panel(event.panel)
1582	event.panel.uid = event_id
1583	self.mypanels.append(event.panel)
1584
1585	def _onclearslicer(self, event):
1586	"""
1587	Clear the boxslicer when close the panel associate with this slicer
1588	"""
1589	name = event.GetEventObject().frame.GetTitle()
1590	for panel in self.slicer_panels:
1591	if panel.window_caption == name:
1592
1593	for item in self.parent.panels:
1594	if hasattr(self.parent.panels[item], "uid"):
1595	if self.parent.panels[item].uid == panel.base.uid:
1596	self.parent.panels[item].onClearSlicer(event)
1597	#self.parent._mgr.Update()
1598	break
1599	break
1600
1601	def _on_model_panel(self, evt):
1602	"""
1603	react to model selection on any combo box or model menu.plot the model
1604
1605	:param evt: wx.combobox event
1606
1607	"""
1608	model = evt.model
1609	uid = evt.uid
1610	qmin = evt.qmin
1611	qmax = evt.qmax
1612	caption = evt.caption
1613	enable_smearer = evt.enable_smearer
1614	if model == None:
1615	return
1616	if uid not in self.page_finder.keys():
1617	return
1618	# save the name containing the data name with the appropriate model
1619	self.page_finder[uid].set_model(model)
1620	self.page_finder[uid].enable_smearing(enable_smearer)
1621	self.page_finder[uid].set_range(qmin=qmin, qmax=qmax)
1622	self.page_finder[uid].set_fit_tab_caption(caption=caption)
1623	if self.sim_page is not None and not self.batch_on:
1624	self.sim_page.draw_page()
1625	if self.batch_page is not None and self.batch_on:
1626	self.batch_page.draw_page()
1627
1628	def _update1D(self, x, output):
1629	"""
1630	Update the output of plotting model 1D
1631	"""
1632	msg = "Plot updating ... "
1633	wx.PostEvent(self.parent, StatusEvent(status=msg, type="update"))
1634
1635	def _complete1D(self, x, y, page_id, elapsed, index, model,
1636	weight=None, fid=None,
1637	toggle_mode_on=False, state=None,
1638	data=None, update_chisqr=True,
1639	source='model', plot_result=True):
1640	"""
1641	Complete plotting 1D data
1642	"""
1643	try:
1644	numpy.nan_to_num(y)
1645
1646	new_plot = Data1D(x=x, y=y)
1647	new_plot.is_data = False
1648	new_plot.dy = numpy.zeros(len(y))
1649	new_plot.symbol = GUIFRAME_ID.CURVE_SYMBOL_NUM
1650	_yaxis, _yunit = data.get_yaxis()
1651	_xaxis, _xunit = data.get_xaxis()
1652	new_plot.title = data.name
1653
1654	new_plot.group_id = data.group_id
1655	if new_plot.group_id == None:
1656	new_plot.group_id = data.group_id
1657	new_plot.id = str(page_id) + " " + data.name
1658	#if new_plot.id in self.color_dict:
1659	# new_plot.custom_color = self.color_dict[new_plot.id]
1660	#find if this theory was already plotted and replace that plot given
1661	#the same id
1662	theory_data = self.page_finder[page_id].get_theory_data(fid=data.id)
1663
1664	if data.is_data:
1665	data_name = str(data.name)
1666	else:
1667	data_name = str(model.__class__.__name__)
1668
1669	new_plot.name = model.name + " [" + data_name +"]"
1670	new_plot.xaxis(_xaxis, _xunit)
1671	new_plot.yaxis(_yaxis, _yunit)
1672	self.page_finder[page_id].set_theory_data(data=new_plot,
1673	fid=data.id)
1674	self.parent.update_theory(data_id=data.id, theory=new_plot,
1675	state=state)
1676	current_pg = self.fit_panel.get_page_by_id(page_id)
1677	title = new_plot.title
1678	batch_on = self.fit_panel.get_page_by_id(page_id).batch_on
1679	if not batch_on:
1680	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot,
1681	title=str(title)))
1682	elif plot_result:
1683	top_data_id = self.fit_panel.get_page_by_id(page_id).data.id
1684	if data.id == top_data_id:
1685	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot,
1686	title=str(title)))
1687	caption = current_pg.window_caption
1688	self.page_finder[page_id].set_fit_tab_caption(caption=caption)
1689
1690	self.page_finder[page_id].set_theory_data(data=new_plot,
1691	fid=data.id)
1692	if toggle_mode_on:
1693	wx.PostEvent(self.parent,
1694	NewPlotEvent(group_id=str(page_id) + " Model2D",
1695	action="Hide"))
1696	else:
1697	if update_chisqr:
1698	wx.PostEvent(current_pg,
1699	Chi2UpdateEvent(output=self._cal_chisqr(
1700	data=data,
1701	fid=fid,
1702	weight=weight,
1703	page_id=page_id,
1704	index=index)))
1705	else:
1706	self._plot_residuals(page_id=page_id, data=data, fid=fid,
1707	index=index, weight=weight)
1708
1709	msg = "Computation completed!"
1710	wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop"))
1711	except:
1712	raise
1713
1714	def _update2D(self, output, time=None):
1715	"""
1716	Update the output of plotting model
1717	"""
1718	wx.PostEvent(self.parent, StatusEvent(status="Plot \
1719	#updating ... ", type="update"))
1720	#self.ready_fit()
1721
1722	def _complete2D(self, image, data, model, page_id, elapsed, index, qmin,
1723	qmax, fid=None, weight=None, toggle_mode_on=False, state=None,
1724	update_chisqr=True, source='model', plot_result=True):
1725	"""
1726	Complete get the result of modelthread and create model 2D
1727	that can be plot.
1728	"""
1729	numpy.nan_to_num(image)
1730	new_plot = Data2D(image=image, err_image=data.err_data)
1731	new_plot.name = model.name + '2d'
1732	new_plot.title = "Analytical model 2D "
1733	new_plot.id = str(page_id) + " " + data.name
1734	new_plot.group_id = str(page_id) + " Model2D"
1735	new_plot.detector = data.detector
1736	new_plot.source = data.source
1737	new_plot.is_data = False
1738	new_plot.qx_data = data.qx_data
1739	new_plot.qy_data = data.qy_data
1740	new_plot.q_data = data.q_data
1741	new_plot.mask = data.mask
1742	## plot boundaries
1743	new_plot.ymin = data.ymin
1744	new_plot.ymax = data.ymax
1745	new_plot.xmin = data.xmin
1746	new_plot.xmax = data.xmax
1747	title = data.title
1748
1749	new_plot.is_data = False
1750	if data.is_data:
1751	data_name = str(data.name)
1752	else:
1753	data_name = str(model.__class__.__name__) + '2d'
1754
1755	if len(title) > 1:
1756	new_plot.title = "Model2D for %s "% model.name + data_name
1757	new_plot.name = model.name + " [" + \
1758	data_name + "]"
1759	theory_data = deepcopy(new_plot)
1760
1761	self.page_finder[page_id].set_theory_data(data=theory_data,
1762	fid=data.id)
1763	self.parent.update_theory(data_id=data.id,
1764	theory=new_plot,
1765	state=state)
1766	current_pg = self.fit_panel.get_page_by_id(page_id)
1767	title = new_plot.title
1768	if not source == 'fit' and plot_result:
1769	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot,
1770	title=title))
1771	if toggle_mode_on:
1772	wx.PostEvent(self.parent,
1773	NewPlotEvent(group_id=str(page_id) + " Model1D",
1774	action="Hide"))
1775	else:
1776	# Chisqr in fitpage
1777	if update_chisqr:
1778	wx.PostEvent(current_pg,
1779	Chi2UpdateEvent(output=self._cal_chisqr(data=data,
1780	weight=weight,
1781	fid=fid,
1782	page_id=page_id,
1783	index=index)))
1784	else:
1785	self._plot_residuals(page_id=page_id, data=data, fid=fid,
1786	index=index, weight=weight)
1787	msg = "Computation completed!"
1788	wx.PostEvent(self.parent, StatusEvent(status=msg, type="stop"))
1789
1790	def _draw_model2D(self, model, page_id, qmin,
1791	qmax,
1792	data=None, smearer=None,
1793	description=None, enable2D=False,
1794	state=None,
1795	fid=None,
1796	weight=None,
1797	toggle_mode_on=False,
1798	update_chisqr=True, source='model'):
1799	"""
1800	draw model in 2D
1801
1802	:param model: instance of the model to draw
1803	:param description: the description of the model
1804	:param enable2D: when True allows to draw model 2D
1805	:param qmin: the minimum value to draw model 2D
1806	:param qmax: the maximum value to draw model 2D
1807	:param qstep: the number of division of Qx and Qy of the model to draw
1808
1809	"""
1810	if not enable2D:
1811	return None
1812	try:
1813	from model_thread import Calc2D
1814	## If a thread is already started, stop it
1815	if (self.calc_2D is not None) and self.calc_2D.isrunning():
1816	self.calc_2D.stop()
1817	## stop just raises a flag to tell the thread to kill
1818	## itself -- see the fix in Calc1D implemented to fix
1819	## an actual problem. Seems the fix should also go here
1820	## and may be the cause of other noted instabilities
1821	##
1822	## -PDB August 12, 2014
1823	while self.calc_2D.isrunning():
1824	time.sleep(0.1)
1825	self.calc_2D = Calc2D(model=model,
1826	data=data,
1827	page_id=page_id,
1828	smearer=smearer,
1829	qmin=qmin,
1830	qmax=qmax,
1831	weight=weight,
1832	fid=fid,
1833	toggle_mode_on=toggle_mode_on,
1834	state=state,
1835	completefn=self._complete2D,
1836	update_chisqr=update_chisqr, source=source)
1837	self.calc_2D.queue()
1838	except:
1839	raise
1840
1841	def _draw_model1D(self, model, page_id, data,
1842	qmin, qmax, smearer=None,
1843	state=None,
1844	weight=None,
1845	fid=None,
1846	toggle_mode_on=False, update_chisqr=True, source='model',
1847	enable1D=True):
1848	"""
1849	Draw model 1D from loaded data1D
1850
1851	:param data: loaded data
1852	:param model: the model to plot
1853
1854	"""
1855	if not enable1D:
1856	return
1857	try:
1858	from model_thread import Calc1D
1859	## If a thread is already started, stop it
1860	if (self.calc_1D is not None) and self.calc_1D.isrunning():
1861	self.calc_1D.stop()
1862	## stop just raises the flag -- the thread is supposed to
1863	## then kill itself but cannot. Paul Kienzle came up with
1864	## this fix to prevent threads from stepping on each other
1865	## which was causing a simple custom model to crash Sasview.
1866	## We still don't know why the fit sometimes lauched a second
1867	## thread -- something which should also be investigated.
1868	## The thread approach was implemented in order to be able
1869	## to lauch a computation in a separate thread from the GUI so
1870	## that the GUI can still respond to user input including
1871	## a request to stop the computation.
1872	## It seems thus that the whole thread approach used here
1873	## May need rethinking
1874	##
1875	## -PDB August 12, 2014
1876	while self.calc_1D.isrunning():
1877	time.sleep(0.1)
1878	self.calc_1D = Calc1D(data=data,
1879	model=model,
1880	page_id=page_id,
1881	qmin=qmin,
1882	qmax=qmax,
1883	smearer=smearer,
1884	state=state,
1885	weight=weight,
1886	fid=fid,
1887	toggle_mode_on=toggle_mode_on,
1888	completefn=self._complete1D,
1889	#updatefn = self._update1D,
1890	update_chisqr=update_chisqr,
1891	source=source)
1892	self.calc_1D.queue()
1893	except:
1894	msg = " Error occurred when drawing %s Model 1D: " % model.name
1895	msg += " %s" % sys.exc_value
1896	wx.PostEvent(self.parent, StatusEvent(status=msg))
1897
1898	def _cal_chisqr(self, page_id, data, weight, fid=None, index=None):
1899	"""
1900	Get handy Chisqr using the output from draw1D and 2D,
1901	instead of calling expansive CalcChisqr in guithread
1902	"""
1903	try:
1904	data_copy = deepcopy(data)
1905	except:
1906	return
1907	# default chisqr
1908	chisqr = None
1909	#to compute chisq make sure data has valid data
1910	# return None if data == None
1911	if not check_data_validity(data_copy) or data_copy == None:
1912	return chisqr
1913
1914	# Get data: data I, theory I, and data dI in order
1915	if data_copy.__class__.__name__ == "Data2D":
1916	if index == None:
1917	index = numpy.ones(len(data_copy.data), dtype=bool)
1918	if weight != None:
1919	data_copy.err_data = weight
1920	# get rid of zero error points
1921	index = index & (data_copy.err_data != 0)
1922	index = index & (numpy.isfinite(data_copy.data))
1923	fn = data_copy.data[index]
1924	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
1925	if theory_data == None:
1926	return chisqr
1927	gn = theory_data.data[index]
1928	en = data_copy.err_data[index]
1929	else:
1930	# 1 d theory from model_thread is only in the range of index
1931	if index == None:
1932	index = numpy.ones(len(data_copy.y), dtype=bool)
1933	if weight != None:
1934	data_copy.dy = weight
1935	if data_copy.dy == None or data_copy.dy == []:
1936	dy = numpy.ones(len(data_copy.y))
1937	else:
1938	## Set consitently w/AbstractFitengine:
1939	# But this should be corrected later.
1940	dy = deepcopy(data_copy.dy)
1941	dy[dy == 0] = 1
1942	fn = data_copy.y[index]
1943
1944	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
1945	if theory_data == None:
1946	return chisqr
1947	gn = theory_data.y
1948	en = dy[index]
1949
1950	# residual
1951	try:
1952	res = (fn - gn) / en
1953	except ValueError:
1954	print "Unmatch lengths %s, %s, %s"% (len(fn), len(gn), len(en))
1955	return
1956
1957	residuals = res[numpy.isfinite(res)]
1958	# get chisqr only w/finite
1959	chisqr = numpy.average(residuals * residuals)
1960
1961	self._plot_residuals(page_id=page_id, data=data_copy,
1962	fid=fid,
1963	weight=weight, index=index)
1964
1965	return chisqr
1966
1967	def _plot_residuals(self, page_id, weight, fid=None,
1968	data=None, index=None):
1969	"""
1970	Plot the residuals
1971
1972	:param data: data
1973	:param index: index array (bool)
1974	: Note: this is different from the residuals in cal_chisqr()
1975	"""
1976	data_copy = deepcopy(data)
1977	# Get data: data I, theory I, and data dI in order
1978	if data_copy.__class__.__name__ == "Data2D":
1979	# build residuals
1980	residuals = Data2D()
1981	#residuals.copy_from_datainfo(data)
1982	# Not for trunk the line below, instead use the line above
1983	data_copy.clone_without_data(len(data_copy.data), residuals)
1984	residuals.data = None
1985	fn = data_copy.data
1986	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
1987	gn = theory_data.data
1988	if weight == None:
1989	en = data_copy.err_data
1990	else:
1991	en = weight
1992	residuals.data = (fn - gn) / en
1993	residuals.qx_data = data_copy.qx_data
1994	residuals.qy_data = data_copy.qy_data
1995	residuals.q_data = data_copy.q_data
1996	residuals.err_data = numpy.ones(len(residuals.data))
1997	residuals.xmin = min(residuals.qx_data)
1998	residuals.xmax = max(residuals.qx_data)
1999	residuals.ymin = min(residuals.qy_data)
2000	residuals.ymax = max(residuals.qy_data)
2001	residuals.q_data = data_copy.q_data
2002	residuals.mask = data_copy.mask
2003	residuals.scale = 'linear'
2004	# check the lengths
2005	if len(residuals.data) != len(residuals.q_data):
2006	return
2007	else:
2008	# 1 d theory from model_thread is only in the range of index
2009	if data_copy.dy == None or data_copy.dy == []:
2010	dy = numpy.ones(len(data_copy.y))
2011	else:
2012	if weight == None:
2013	dy = numpy.ones(len(data_copy.y))
2014	## Set consitently w/AbstractFitengine:
2015	## But this should be corrected later.
2016	else:
2017	dy = weight
2018	dy[dy == 0] = 1
2019	fn = data_copy.y[index]
2020	theory_data = self.page_finder[page_id].get_theory_data(fid=data_copy.id)
2021	gn = theory_data.y
2022	en = dy[index]
2023	# build residuals
2024	residuals = Data1D()
2025	try:
2026	residuals.y = (fn - gn) / en
2027	except:
2028	msg = "ResidualPlot Error: different # of data points in theory"
2029	wx.PostEvent(self.parent, StatusEvent(status=msg, info="error"))
2030	residuals.y = (fn - gn[index]) / en
2031	residuals.x = data_copy.x[index]
2032	residuals.dy = numpy.ones(len(residuals.y))
2033	residuals.dx = None
2034	residuals.dxl = None
2035	residuals.dxw = None
2036	residuals.ytransform = 'y'
2037	# For latter scale changes
2038	residuals.xaxis('\\rm{Q} ', 'A^{-1}')
2039	residuals.yaxis('\\rm{Residuals} ', 'normalized')
2040	theory_name = str(theory_data.name.split()[0])
2041	new_plot = residuals
2042	new_plot.name = "Residuals for " + str(theory_name) + "[" +\
2043	str(data.name) +"]"
2044	## allow to highlight data when plotted
2045	new_plot.interactive = True
2046	## when 2 data have the same id override the 1 st plotted
2047	new_plot.id = "res" + str(data_copy.id) + str(theory_name)
2048	##group_id specify on which panel to plot this data
2049	group_id = self.page_finder[page_id].get_graph_id()
2050	if group_id == None:
2051	group_id = data.group_id
2052	new_plot.group_id = "res" + str(group_id)
2053	#new_plot.is_data = True
2054	##post data to plot
2055	title = new_plot.name
2056	self.page_finder[page_id].set_residuals(residuals=new_plot,
2057	fid=data.id)
2058	self.parent.update_theory(data_id=data.id, theory=new_plot)
2059	batch_on = self.fit_panel.get_page_by_id(page_id).batch_on
2060	if not batch_on:
2061	wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title=title))

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SasView

source: sasview/src/sas/perspectives/fitting/fitting.py @ 7cd87c2

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