1 | """ |
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2 | Provide F(x) = 2( exp(-x) + x - 1 )/x**2 |
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3 | with x = (q*R_g)**2 |
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4 | |
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5 | Debye function as a BaseComponent model |
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6 | """ |
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7 | from sas.models.BaseComponent import BaseComponent |
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8 | import math |
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9 | |
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10 | class DebyeModel(BaseComponent): |
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11 | """ |
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12 | Class that evaluates a Debye model. |
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13 | |
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14 | F(x) = 2( exp(-x) + x - 1 )/x**2 |
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15 | with x = (q*R_g)**2 |
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16 | |
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17 | The model has three parameters: |
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18 | Rg = radius of gyration |
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19 | scale = scale factor |
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20 | bkd = Constant background |
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21 | """ |
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22 | |
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23 | def __init__(self): |
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24 | """ Initialization """ |
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25 | |
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26 | # Initialize BaseComponent first, then sphere |
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27 | BaseComponent.__init__(self) |
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28 | |
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29 | ## Name of the model |
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30 | self.name = "Debye" |
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31 | self.description = """ |
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32 | F(x) = 2( exp(-x) + x - 1 )/x**2 |
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33 | with x = (q*R_g)**2 |
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34 | |
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35 | The model has three parameters: |
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36 | Rg = radius of gyration |
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37 | scale = scale factor |
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38 | bkd = Constant background |
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39 | """ |
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40 | ## Define parameters |
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41 | self.params = {} |
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42 | self.params['rg'] = 50.0 |
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43 | self.params['scale'] = 1.0 |
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44 | self.params['background'] = 0.0 |
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45 | |
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46 | ## Parameter details [units, min, max] |
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47 | self.details = {} |
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48 | self.details['rg'] = ['[A]', None, None] |
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49 | self.details['scale'] = ['', None, None] |
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50 | self.details['background'] = ['[1/cm]', None, None] |
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51 | #list of parameter that cannot be fitted |
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52 | self.fixed = [] |
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53 | |
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54 | def _debye(self, x): |
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55 | """ |
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56 | Evaluate F(x)= scale * D + bkd |
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57 | has 2 internal parameters : |
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58 | D = 2 * (exp(-y) + y - 1)/y**2 |
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59 | y = (x * Rg)^(2) |
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60 | """ |
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61 | # Note that a zero denominator value will raise |
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62 | # an exception |
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63 | y = (x * self.params['rg'])**2.0 |
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64 | if x == 0: |
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65 | D = 1 |
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66 | else: |
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67 | D = 2.0*( math.exp(-y) + y -1.0 )/y**2.0 |
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68 | return self.params['scale'] * D + self.params['background'] |
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69 | |
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70 | def run(self, x = 0.0): |
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71 | """ Evaluate the model |
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72 | @param x: input q-value (float or [float, float] as [r, theta]) |
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73 | @return: (debye value) |
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74 | """ |
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75 | if x.__class__.__name__ == 'list': |
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76 | return self._debye(x[0]) |
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77 | elif x.__class__.__name__ == 'tuple': |
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78 | raise ValueError, "Tuples are not allowed as input to models" |
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79 | else: |
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80 | return self._debye(x) |
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81 | |
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82 | def runXY(self, x = 0.0): |
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83 | """ Evaluate the model |
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84 | @param x: input q-value (float or [float, float] as [qx, qy]) |
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85 | @return: debye value |
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86 | """ |
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87 | if x.__class__.__name__ == 'list': |
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88 | q = math.sqrt(x[0]**2 + x[1]**2) |
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89 | return self._debye(q) |
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90 | elif x.__class__.__name__ == 'tuple': |
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91 | raise ValueError, "Tuples are not allowed as input to models" |
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92 | else: |
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93 | return self._debye(x) |
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