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..pr_help.rst

P(r) Inversion Perspective

The inversion approach is based on Moore, J. Appl. Cryst., (1980) 13, 168-175.

P(r) is set to be equal to an expansion of base functions of the type phi_n(r) = 2*r*sin(pi*n*r/D_max).

The coefficient of each base function in the expansion is found by performing a least square fit with the following fit function:

chi**2 = sum_i[ I_meas(q_i) - I_th(q_i) ]**2/error**2 + Reg_term

where I_meas(q) is the measured scattering intensity and I_th(q) is the prediction from the Fourier transform of the P(r) expansion.

The Reg_term term is a regularization term set to the second derivative d**2P(r)/dr**2 integrated over r. It is used to produce a smooth P(r) output.

The following are user inputs:

  • Number of terms: the number of base functions in the P(r) expansion.
  • Regularization constant: a multiplicative constant to set the size of
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the regularization term.

  • Maximum distance: the maximum distance between any two points in the
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system.

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