[23a9beb] | 1 | .. invariant_help.rst |
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[0d66541] | 2 | |
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[78f02c3] | 3 | .. This is a port of the original SasView html help file to ReSTructured text |
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| 4 | .. by S King, ISIS, during SasView CodeCamp-III in Feb 2015. |
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| 5 | |
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[37bbd5f] | 6 | Invariant Calculation Perspective |
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| 7 | ================================= |
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| 8 | |
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[23a9beb] | 9 | Scattering_Invariant_ |
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| 10 | |
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| 11 | Volume_Fraction_ |
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| 12 | |
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| 13 | Specific_Surface_Area_ |
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| 14 | |
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| 15 | Definitions_ |
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| 16 | |
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| 17 | Reference_ |
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| 18 | |
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| 19 | How_to_Use_ |
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[78f02c3] | 20 | |
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| 21 | .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ |
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| 22 | |
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[23a9beb] | 23 | .. _Scattering_Invariant: |
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[78f02c3] | 24 | |
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| 25 | Scattering Invariant |
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| 26 | -------------------- |
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| 27 | |
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| 28 | The scattering invariant (Q*) is a model-independent quantity that can be |
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| 29 | easily calculated from scattering data. |
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| 30 | |
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| 31 | For two phase systems, the scattering invariant, Q*, is defined as the |
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| 32 | integral of the square of the wave transfer (q) multiplied by the scattering |
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| 33 | cross section over the full range of q. |
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| 34 | |
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| 35 | Q* is given by the following equation |
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| 36 | |
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| 37 | .. image:: image001.gif |
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| 38 | |
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| 39 | This model independent quantity (Q*) is calculated from the scattering data |
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| 40 | that can be used to determine the volume fraction and the specific area of the |
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| 41 | sample under consideration. |
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| 42 | |
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| 43 | These quantities are useful in their own right and can be used in further |
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| 44 | analysis. With this scattering invariant module users will also be able to |
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| 45 | determine the consistency of those properties between data. There is no real |
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| 46 | data defined from zero to infinity, there usually have limited range. |
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| 47 | |
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| 48 | Q* is not really computed from zero to infinity. Our maximum q range is |
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| 49 | 1e-5 ~ 10 (1/Angstrom). The lower and/or higher q range than data given can be |
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| 50 | extrapolated by fitting some data nearby. |
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| 51 | |
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| 52 | The scattering invariant is computed as follows |
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| 53 | |
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| 54 | *I(q)* = *I(q)* w/o background : If the data includes a background, user sets |
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| 55 | the value to subtract the background for the Q* computation. |
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| 56 | |
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| 57 | Reset *I(q)* = *I(q)* scaling factor* , delta *I(q) =* delta *I(q)*scaling |
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| 58 | factor* : If non-zero scaling factor is given, it will be considered. |
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| 59 | |
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| 60 | Invariant |
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| 61 | |
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| 62 | .. image:: image001.gif |
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| 63 | |
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| 64 | where *g =q* for the pinhole geometry and *g =qv* (the slit height) for the |
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| 65 | slit geometry which can be given in data or as a value. |
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| 66 | |
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| 67 | Higher q-region (\>= qmax in data) |
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| 68 | |
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| 69 | Power law (w/o background term) function = C/q4will be used |
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| 70 | |
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| 71 | where the constant C(=2pi(delta(rho))Sv) is to be found by fitting part of |
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| 72 | data with the range of qN-mto qN(m\<N). |
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| 73 | |
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| 74 | Lower q-region (\<= qmin in data): |
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| 75 | |
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| 76 | Guinier function = *I0exp(-Rg2q2/3)* where I0and Rgare obtained by fitting, |
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| 77 | |
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| 78 | similarly to the high q region above. |
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| 79 | |
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| 80 | Power law can also be used. |
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| 81 | |
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| 82 | .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ |
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| 83 | |
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[23a9beb] | 84 | .. _Volume_Fraction: |
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[78f02c3] | 85 | |
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| 86 | Volume Fraction |
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| 87 | --------------- |
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| 88 | |
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| 89 | .. image:: image002.gif |
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| 90 | |
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| 91 | where delta(rho) is the SLD contrast of which value is given by users. |
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| 92 | |
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| 93 | .. image:: image003.gif |
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| 94 | |
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| 95 | Thus |
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| 96 | |
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| 97 | where 0 =\< *A* =\<1/4 in order for these values to be physically valid. |
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| 98 | |
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| 99 | .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ |
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| 100 | |
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[23a9beb] | 101 | .. _Specific_Surface_Area: |
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[78f02c3] | 102 | |
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| 103 | Specific Surface Area |
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| 104 | --------------------- |
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| 105 | |
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| 106 | .. image:: image004.gif |
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| 107 | |
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| 108 | where *A* and *Q** are obtained from previous sections, and the Porod |
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| 109 | constant *Cp* is given by users. |
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| 110 | |
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| 111 | .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ |
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| 112 | |
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[23a9beb] | 113 | .. _Definitions: |
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[78f02c3] | 114 | |
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| 115 | Definitions |
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| 116 | ----------- |
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| 117 | |
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| 118 | Q: the magnitude of neutron (or X-ray) momentum transfer vector. |
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| 119 | |
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| 120 | I(Q): the scattering intensity as a function of the momentum transfer Q. |
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| 121 | |
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[23a9beb] | 122 | Invariant total is the sum of the invariant calculated from datas q range and |
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[78f02c3] | 123 | the invariant resulting from extrapolation at low q range and at high q range |
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| 124 | if considered. |
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| 125 | |
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| 126 | .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ |
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| 127 | |
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| 128 | .. _Reference: |
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| 129 | |
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| 130 | References |
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| 131 | ---------- |
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| 132 | |
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| 133 | Chapter 2 in O. Glatter and O. Kratky, "Small Angle X-Ray Scattering", Academic |
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| 134 | Press, New York, 1982 |
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| 135 | |
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[23a9beb] | 136 | http://physchem.kfunigraz.ac.at/sm/ |
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[78f02c3] | 137 | |
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| 138 | .. ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZ |
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| 139 | |
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[23a9beb] | 140 | .. _How_to_Use: |
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[78f02c3] | 141 | |
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| 142 | How to Use |
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| 143 | ---------- |
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| 144 | |
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| 145 | 1. Loading data to the panel: Open the data file from File in the menu bar. |
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| 146 | Select loaded data from a plot panel by highlighting that it until its color |
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| 147 | turns yellow. Then right click on that the data and selects the option Compute |
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| 148 | Invariant. The application automatically computes the invariant value if the |
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| 149 | data loaded is valid. |
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| 150 | |
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| 151 | 2. To subtract a background or/and to rescale the data, type the values in |
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| 152 | Customized Input box. |
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| 153 | |
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| 154 | 3. If you want to calculate the volume fraction and the specific surface |
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| 155 | area, type the optional inputs in the customized input box, and then press |
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[23a9beb] | 156 | 'Compute' button. |
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[78f02c3] | 157 | |
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| 158 | 4. The invariant can also be calculated including the outside of the data Q |
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| 159 | range: To include the lower Q and/or the higher Q range, check in the enable |
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[23a9beb] | 160 | extrapolation check box in 'Extrapolation' box. If the power low is chosen, |
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[78f02c3] | 161 | the power (exponent) can be either held or fitted by checking the |
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| 162 | corresponding radio button. The Npts that is being used for the extrapolation |
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| 163 | can be specified. |
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| 164 | |
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| 165 | 5. If the invariant calculated from the extrapolated region is too large, it |
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| 166 | will be warn in red at the top of the panel, which means that your data is not |
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| 167 | proper to calculate the invariant. |
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| 168 | |
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[23a9beb] | 169 | 6. The details of the calculation is available by clicking the 'Details' |
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[78f02c3] | 170 | button in the middle of the panel. |
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| 171 | |
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| 172 | .. image:: image005.gif |
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