source: sasview/src/sans/models/c_extension/python_wrapper/generated/CStackedDisksModel.cpp @ 400155b

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.1.1release-4.1.2release-4.2.2release_4.0.1ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload
Last change on this file since 400155b was 400155b, checked in by gonzalezm, 9 years ago

Implementing request from ticket 261 - default number of bins in Annulus [Phi View] is now 36 and the first bin is now centered at 0 degrees
  • Property mode set to 100644
File size: 29.1 KB
Line 
1/**
2        This software was developed by the University of Tennessee as part of the
3        Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
4        project funded by the US National Science Foundation.
5
6        If you use DANSE applications to do scientific research that leads to
7        publication, we ask that you acknowledge the use of the software with the
8        following sentence:
9
10        "This work benefited from DANSE software developed under NSF award DMR-0520547."
11
12        copyright 2008, University of Tennessee
13 */
14
15/** CStackedDisksModel
16 *
17 * C extension
18 *
19 * WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
20 *          DO NOT MODIFY THIS FILE, MODIFY src\sans\models\include\stacked_disks.h
21 *          AND RE-RUN THE GENERATOR SCRIPT
22 *
23 */
24#define NO_IMPORT_ARRAY
25#define PY_ARRAY_UNIQUE_SYMBOL PyArray_API_sans
26 
27extern "C" {
28#include <Python.h>
29#include <arrayobject.h>
30#include "structmember.h"
31#include <stdio.h>
32#include <stdlib.h>
33#include <math.h>
34#include <time.h>
35
36}
37
38#include "stacked_disks.h"
39#include "dispersion_visitor.hh"
40
41/// Error object for raised exceptions
42static PyObject * CStackedDisksModelError = NULL;
43
44
45// Class definition
46typedef struct {
47    PyObject_HEAD
48    /// Parameters
49    PyObject * params;
50    /// Dispersion parameters
51    PyObject * dispersion;
52    /// Underlying model object
53    StackedDisksModel * model;
54    /// Log for unit testing
55    PyObject * log;
56} CStackedDisksModel;
57
58
59static void
60CStackedDisksModel_dealloc(CStackedDisksModel* self)
61{
62    Py_DECREF(self->params);
63    Py_DECREF(self->dispersion);
64    Py_DECREF(self->log);
65    delete self->model;
66    self->ob_type->tp_free((PyObject*)self);
67   
68
69}
70
71static PyObject *
72CStackedDisksModel_new(PyTypeObject *type, PyObject *args, PyObject *kwds)
73{
74    CStackedDisksModel *self;
75   
76    self = (CStackedDisksModel *)type->tp_alloc(type, 0);
77   
78    return (PyObject *)self;
79}
80
81static int
82CStackedDisksModel_init(CStackedDisksModel *self, PyObject *args, PyObject *kwds)
83{
84    if (self != NULL) {
85       
86        // Create parameters
87        self->params = PyDict_New();
88        self->dispersion = PyDict_New();
89
90        self->model = new StackedDisksModel();
91
92        // Initialize parameter dictionary
93        PyDict_SetItemString(self->params,"core_sld",Py_BuildValue("d",0.000004000000));
94        PyDict_SetItemString(self->params,"core_thick",Py_BuildValue("d",10.000000000000));
95        PyDict_SetItemString(self->params,"layer_thick",Py_BuildValue("d",15.000000000000));
96        PyDict_SetItemString(self->params,"axis_theta",Py_BuildValue("d",0.000000000000));
97        PyDict_SetItemString(self->params,"layer_sld",Py_BuildValue("d",-0.000000400000));
98        PyDict_SetItemString(self->params,"axis_phi",Py_BuildValue("d",0.000000000000));
99        PyDict_SetItemString(self->params,"solvent_sld",Py_BuildValue("d",0.000005000000));
100        PyDict_SetItemString(self->params,"scale",Py_BuildValue("d",0.010000000000));
101        PyDict_SetItemString(self->params,"radius",Py_BuildValue("d",3000.000000000000));
102        PyDict_SetItemString(self->params,"background",Py_BuildValue("d",0.001000000000));
103        PyDict_SetItemString(self->params,"sigma_d",Py_BuildValue("d",0.000000000000));
104        PyDict_SetItemString(self->params,"n_stacking",Py_BuildValue("d",1.000000000000));
105        // Initialize dispersion / averaging parameter dict
106        DispersionVisitor* visitor = new DispersionVisitor();
107        PyObject * disp_dict;
108        disp_dict = PyDict_New();
109        self->model->core_thick.dispersion->accept_as_source(visitor, self->model->core_thick.dispersion, disp_dict);
110        PyDict_SetItemString(self->dispersion, "core_thick", disp_dict);
111        disp_dict = PyDict_New();
112        self->model->layer_thick.dispersion->accept_as_source(visitor, self->model->layer_thick.dispersion, disp_dict);
113        PyDict_SetItemString(self->dispersion, "layer_thick", disp_dict);
114        disp_dict = PyDict_New();
115        self->model->radius.dispersion->accept_as_source(visitor, self->model->radius.dispersion, disp_dict);
116        PyDict_SetItemString(self->dispersion, "radius", disp_dict);
117        disp_dict = PyDict_New();
118        self->model->axis_theta.dispersion->accept_as_source(visitor, self->model->axis_theta.dispersion, disp_dict);
119        PyDict_SetItemString(self->dispersion, "axis_theta", disp_dict);
120        disp_dict = PyDict_New();
121        self->model->axis_phi.dispersion->accept_as_source(visitor, self->model->axis_phi.dispersion, disp_dict);
122        PyDict_SetItemString(self->dispersion, "axis_phi", disp_dict);
123
124
125         
126        // Create empty log
127        self->log = PyDict_New();
128       
129       
130
131    }
132    return 0;
133}
134
135static char name_params[] = "params";
136static char def_params[] = "Parameters";
137static char name_dispersion[] = "dispersion";
138static char def_dispersion[] = "Dispersion parameters";
139static char name_log[] = "log";
140static char def_log[] = "Log";
141
142static PyMemberDef CStackedDisksModel_members[] = {
143    {name_params, T_OBJECT, offsetof(CStackedDisksModel, params), 0, def_params},
144        {name_dispersion, T_OBJECT, offsetof(CStackedDisksModel, dispersion), 0, def_dispersion},     
145    {name_log, T_OBJECT, offsetof(CStackedDisksModel, log), 0, def_log},
146    {NULL}  /* Sentinel */
147};
148
149/** Read double from PyObject
150    @param p PyObject
151    @return double
152*/
153double CStackedDisksModel_readDouble(PyObject *p) {
154    if (PyFloat_Check(p)==1) {
155        return (double)(((PyFloatObject *)(p))->ob_fval);
156    } else if (PyInt_Check(p)==1) {
157        return (double)(((PyIntObject *)(p))->ob_ival);
158    } else if (PyLong_Check(p)==1) {
159        return (double)PyLong_AsLong(p);
160    } else {
161        return 0.0;
162    }
163}
164/**
165 * Function to call to evaluate model
166 * @param args: input numpy array q[]
167 * @return: numpy array object
168 */
169 
170static PyObject *evaluateOneDim(StackedDisksModel* model, PyArrayObject *q){
171    PyArrayObject *result;
172   
173    // Check validity of array q , q must be of dimension 1, an array of double
174    if (q->nd != 1 || q->descr->type_num != PyArray_DOUBLE)
175    {
176        //const char * message= "Invalid array: q->nd=%d,type_num=%d\n",q->nd,q->descr->type_num;
177        //PyErr_SetString(PyExc_ValueError , message);
178        return NULL;
179    }
180    result = (PyArrayObject *)PyArray_FromDims(q->nd, (int *)(q->dimensions), PyArray_DOUBLE);
181        if (result == NULL) {
182        const char * message= "Could not create result ";
183        PyErr_SetString(PyExc_RuntimeError , message);
184                return NULL;
185        }
186#pragma omp parallel for
187         for (int i = 0; i < q->dimensions[0]; i++){
188      double q_value  = *(double *)(q->data + i*q->strides[0]);
189      double *result_value = (double *)(result->data + i*result->strides[0]);
190      *result_value =(*model)(q_value);
191        }
192    return PyArray_Return(result); 
193 }
194
195 /**
196 * Function to call to evaluate model
197 * @param args: input numpy array  [x[],y[]]
198 * @return: numpy array object
199 */
200 static PyObject * evaluateTwoDimXY( StackedDisksModel* model, 
201                              PyArrayObject *x, PyArrayObject *y)
202 {
203    PyArrayObject *result;
204    int x_len, y_len, dims[1];
205    //check validity of input vectors
206    if (x->nd != 1 || x->descr->type_num != PyArray_DOUBLE
207        || y->nd != 1 || y->descr->type_num != PyArray_DOUBLE
208        || y->dimensions[0] != x->dimensions[0]){
209        const char * message= "evaluateTwoDimXY  expect 2 numpy arrays";
210        PyErr_SetString(PyExc_ValueError , message); 
211        return NULL;
212    }
213   
214        if (PyArray_Check(x) && PyArray_Check(y)) {
215               
216            x_len = dims[0]= x->dimensions[0];
217        y_len = dims[0]= y->dimensions[0];
218           
219            // Make a new double matrix of same dims
220        result=(PyArrayObject *) PyArray_FromDims(1,dims,NPY_DOUBLE);
221        if (result == NULL){
222            const char * message= "Could not create result ";
223        PyErr_SetString(PyExc_RuntimeError , message);
224            return NULL;
225            }
226       
227        /* Do the calculation. */
228#pragma omp parallel for
229        for (int i=0; i< x_len; i++) {
230            double x_value = *(double *)(x->data + i*x->strides[0]);
231                    double y_value = *(double *)(y->data + i*y->strides[0]);
232                        double *result_value = (double *)(result->data +
233                              i*result->strides[0]);
234                        *result_value = (*model)(x_value, y_value);
235        }           
236        return PyArray_Return(result); 
237       
238        }else{
239                    PyErr_SetString(CStackedDisksModelError, 
240                   "CStackedDisksModel.evaluateTwoDimXY couldn't run.");
241                return NULL;
242                }       
243}
244/**
245 *  evalDistribution function evaluate a model function with input vector
246 *  @param args: input q as vector or [qx, qy] where qx, qy are vectors
247 *
248 */ 
249static PyObject * evalDistribution(CStackedDisksModel *self, PyObject *args){
250        PyObject *qx, *qy;
251        PyArrayObject * pars;
252        int npars ,mpars;
253       
254        // Get parameters
255       
256            // Reader parameter dictionary
257    self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") );
258    self->model->core_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_thick") );
259    self->model->layer_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_thick") );
260    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
261    self->model->layer_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_sld") );
262    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
263    self->model->solvent_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "solvent_sld") );
264    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
265    self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") );
266    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
267    self->model->sigma_d = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sigma_d") );
268    self->model->n_stacking = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_stacking") );
269    // Read in dispersion parameters
270    PyObject* disp_dict;
271    DispersionVisitor* visitor = new DispersionVisitor();
272    disp_dict = PyDict_GetItemString(self->dispersion, "core_thick");
273    self->model->core_thick.dispersion->accept_as_destination(visitor, self->model->core_thick.dispersion, disp_dict);
274    disp_dict = PyDict_GetItemString(self->dispersion, "layer_thick");
275    self->model->layer_thick.dispersion->accept_as_destination(visitor, self->model->layer_thick.dispersion, disp_dict);
276    disp_dict = PyDict_GetItemString(self->dispersion, "radius");
277    self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict);
278    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
279    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
280    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
281    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
282
283       
284        // Get input and determine whether we have to supply a 1D or 2D return value.
285        if ( !PyArg_ParseTuple(args,"O",&pars) ) {
286            PyErr_SetString(CStackedDisksModelError, 
287                "CStackedDisksModel.evalDistribution expects a q value.");
288                return NULL;
289        }
290    // Check params
291       
292    if(PyArray_Check(pars)==1) {
293               
294            // Length of list should 1 or 2
295            npars = pars->nd; 
296            if(npars==1) {
297                // input is a numpy array
298                if (PyArray_Check(pars)) {
299                        return evaluateOneDim(self->model, (PyArrayObject*)pars); 
300                    }
301                }else{
302                    PyErr_SetString(CStackedDisksModelError, 
303                   "CStackedDisksModel.evalDistribution expect numpy array of one dimension.");
304                return NULL;
305                }
306    }else if( PyList_Check(pars)==1) {
307        // Length of list should be 2 for I(qx,qy)
308            mpars = PyList_GET_SIZE(pars); 
309            if(mpars!=2) {
310                PyErr_SetString(CStackedDisksModelError, 
311                        "CStackedDisksModel.evalDistribution expects a list of dimension 2.");
312                return NULL;
313            }
314             qx = PyList_GET_ITEM(pars,0);
315             qy = PyList_GET_ITEM(pars,1);
316             if (PyArray_Check(qx) && PyArray_Check(qy)) {
317                 return evaluateTwoDimXY(self->model, (PyArrayObject*)qx,
318                           (PyArrayObject*)qy);
319                 }else{
320                    PyErr_SetString(CStackedDisksModelError, 
321                   "CStackedDisksModel.evalDistribution expect 2 numpy arrays in list.");
322                return NULL;
323             }
324        }
325        PyErr_SetString(CStackedDisksModelError, 
326                   "CStackedDisksModel.evalDistribution couln't be run.");
327        return NULL;
328       
329}
330
331/**
332 * Function to call to evaluate model
333 * @param args: input q or [q,phi]
334 * @return: function value
335 */
336static PyObject * run(CStackedDisksModel *self, PyObject *args) {
337        double q_value, phi_value;
338        PyObject* pars;
339        int npars;
340       
341        // Get parameters
342       
343            // Reader parameter dictionary
344    self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") );
345    self->model->core_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_thick") );
346    self->model->layer_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_thick") );
347    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
348    self->model->layer_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_sld") );
349    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
350    self->model->solvent_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "solvent_sld") );
351    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
352    self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") );
353    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
354    self->model->sigma_d = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sigma_d") );
355    self->model->n_stacking = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_stacking") );
356    // Read in dispersion parameters
357    PyObject* disp_dict;
358    DispersionVisitor* visitor = new DispersionVisitor();
359    disp_dict = PyDict_GetItemString(self->dispersion, "core_thick");
360    self->model->core_thick.dispersion->accept_as_destination(visitor, self->model->core_thick.dispersion, disp_dict);
361    disp_dict = PyDict_GetItemString(self->dispersion, "layer_thick");
362    self->model->layer_thick.dispersion->accept_as_destination(visitor, self->model->layer_thick.dispersion, disp_dict);
363    disp_dict = PyDict_GetItemString(self->dispersion, "radius");
364    self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict);
365    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
366    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
367    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
368    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
369
370       
371        // Get input and determine whether we have to supply a 1D or 2D return value.
372        if ( !PyArg_ParseTuple(args,"O",&pars) ) {
373            PyErr_SetString(CStackedDisksModelError, 
374                "CStackedDisksModel.run expects a q value.");
375                return NULL;
376        }
377         
378        // Check params
379        if( PyList_Check(pars)==1) {
380               
381                // Length of list should be 2 for I(q,phi)
382            npars = PyList_GET_SIZE(pars); 
383            if(npars!=2) {
384                PyErr_SetString(CStackedDisksModelError, 
385                        "CStackedDisksModel.run expects a double or a list of dimension 2.");
386                return NULL;
387            }
388            // We have a vector q, get the q and phi values at which
389            // to evaluate I(q,phi)
390            q_value = CStackedDisksModel_readDouble(PyList_GET_ITEM(pars,0));
391            phi_value = CStackedDisksModel_readDouble(PyList_GET_ITEM(pars,1));
392            // Skip zero
393            if (q_value==0) {
394                return Py_BuildValue("d",0.0);
395            }
396                return Py_BuildValue("d",(*(self->model)).evaluate_rphi(q_value,phi_value));
397
398        } else {
399
400                // We have a scalar q, we will evaluate I(q)
401                q_value = CStackedDisksModel_readDouble(pars);         
402               
403                return Py_BuildValue("d",(*(self->model))(q_value));
404        }       
405}
406/**
407 * Function to call to calculate_ER
408 * @return: effective radius value
409 */
410static PyObject * calculate_ER(CStackedDisksModel *self) {
411
412        // Get parameters
413       
414            // Reader parameter dictionary
415    self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") );
416    self->model->core_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_thick") );
417    self->model->layer_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_thick") );
418    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
419    self->model->layer_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_sld") );
420    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
421    self->model->solvent_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "solvent_sld") );
422    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
423    self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") );
424    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
425    self->model->sigma_d = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sigma_d") );
426    self->model->n_stacking = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_stacking") );
427    // Read in dispersion parameters
428    PyObject* disp_dict;
429    DispersionVisitor* visitor = new DispersionVisitor();
430    disp_dict = PyDict_GetItemString(self->dispersion, "core_thick");
431    self->model->core_thick.dispersion->accept_as_destination(visitor, self->model->core_thick.dispersion, disp_dict);
432    disp_dict = PyDict_GetItemString(self->dispersion, "layer_thick");
433    self->model->layer_thick.dispersion->accept_as_destination(visitor, self->model->layer_thick.dispersion, disp_dict);
434    disp_dict = PyDict_GetItemString(self->dispersion, "radius");
435    self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict);
436    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
437    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
438    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
439    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
440
441               
442        return Py_BuildValue("d",(*(self->model)).calculate_ER());
443
444}
445/**
446 * Function to call to cal the ratio shell volume/ total volume
447 * @return: the ratio shell volume/ total volume
448 */
449static PyObject * calculate_VR(CStackedDisksModel *self) {
450
451        // Get parameters
452       
453            // Reader parameter dictionary
454    self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") );
455    self->model->core_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_thick") );
456    self->model->layer_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_thick") );
457    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
458    self->model->layer_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_sld") );
459    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
460    self->model->solvent_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "solvent_sld") );
461    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
462    self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") );
463    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
464    self->model->sigma_d = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sigma_d") );
465    self->model->n_stacking = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_stacking") );
466    // Read in dispersion parameters
467    PyObject* disp_dict;
468    DispersionVisitor* visitor = new DispersionVisitor();
469    disp_dict = PyDict_GetItemString(self->dispersion, "core_thick");
470    self->model->core_thick.dispersion->accept_as_destination(visitor, self->model->core_thick.dispersion, disp_dict);
471    disp_dict = PyDict_GetItemString(self->dispersion, "layer_thick");
472    self->model->layer_thick.dispersion->accept_as_destination(visitor, self->model->layer_thick.dispersion, disp_dict);
473    disp_dict = PyDict_GetItemString(self->dispersion, "radius");
474    self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict);
475    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
476    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
477    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
478    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
479
480               
481        return Py_BuildValue("d",(*(self->model)).calculate_VR());
482
483}
484/**
485 * Function to call to evaluate model in cartesian coordinates
486 * @param args: input q or [qx, qy]]
487 * @return: function value
488 */
489static PyObject * runXY(CStackedDisksModel *self, PyObject *args) {
490        double qx_value, qy_value;
491        PyObject* pars;
492        int npars;
493       
494        // Get parameters
495       
496            // Reader parameter dictionary
497    self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") );
498    self->model->core_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_thick") );
499    self->model->layer_thick = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_thick") );
500    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
501    self->model->layer_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "layer_sld") );
502    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
503    self->model->solvent_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "solvent_sld") );
504    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
505    self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") );
506    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
507    self->model->sigma_d = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sigma_d") );
508    self->model->n_stacking = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_stacking") );
509    // Read in dispersion parameters
510    PyObject* disp_dict;
511    DispersionVisitor* visitor = new DispersionVisitor();
512    disp_dict = PyDict_GetItemString(self->dispersion, "core_thick");
513    self->model->core_thick.dispersion->accept_as_destination(visitor, self->model->core_thick.dispersion, disp_dict);
514    disp_dict = PyDict_GetItemString(self->dispersion, "layer_thick");
515    self->model->layer_thick.dispersion->accept_as_destination(visitor, self->model->layer_thick.dispersion, disp_dict);
516    disp_dict = PyDict_GetItemString(self->dispersion, "radius");
517    self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict);
518    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
519    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
520    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
521    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
522
523       
524        // Get input and determine whether we have to supply a 1D or 2D return value.
525        if ( !PyArg_ParseTuple(args,"O",&pars) ) {
526            PyErr_SetString(CStackedDisksModelError, 
527                "CStackedDisksModel.run expects a q value.");
528                return NULL;
529        }
530         
531        // Check params
532        if( PyList_Check(pars)==1) {
533               
534                // Length of list should be 2 for I(qx, qy))
535            npars = PyList_GET_SIZE(pars); 
536            if(npars!=2) {
537                PyErr_SetString(CStackedDisksModelError, 
538                        "CStackedDisksModel.run expects a double or a list of dimension 2.");
539                return NULL;
540            }
541            // We have a vector q, get the qx and qy values at which
542            // to evaluate I(qx,qy)
543            qx_value = CStackedDisksModel_readDouble(PyList_GET_ITEM(pars,0));
544            qy_value = CStackedDisksModel_readDouble(PyList_GET_ITEM(pars,1));
545            return Py_BuildValue("d",(*(self->model))(qx_value,qy_value));
546
547        } else {
548
549                // We have a scalar q, we will evaluate I(q)
550                qx_value = CStackedDisksModel_readDouble(pars);         
551               
552                return Py_BuildValue("d",(*(self->model))(qx_value));
553        }       
554}
555
556static PyObject * reset(CStackedDisksModel *self, PyObject *args) {
557   
558
559    return Py_BuildValue("d",0.0);
560}
561
562static PyObject * set_dispersion(CStackedDisksModel *self, PyObject *args) {
563        PyObject * disp;
564        const char * par_name;
565
566        if ( !PyArg_ParseTuple(args,"sO", &par_name, &disp) ) {
567            PyErr_SetString(CStackedDisksModelError,
568                "CStackedDisksModel.set_dispersion expects a DispersionModel object.");
569                return NULL;
570        }
571        void *temp = PyCObject_AsVoidPtr(disp);
572        DispersionModel * dispersion = static_cast<DispersionModel *>(temp);
573
574
575        // Ugliness necessary to go from python to C
576            // TODO: refactor this
577    if (!strcmp(par_name, "core_thick")) {
578        self->model->core_thick.dispersion = dispersion;
579    } else    if (!strcmp(par_name, "layer_thick")) {
580        self->model->layer_thick.dispersion = dispersion;
581    } else    if (!strcmp(par_name, "radius")) {
582        self->model->radius.dispersion = dispersion;
583    } else    if (!strcmp(par_name, "axis_theta")) {
584        self->model->axis_theta.dispersion = dispersion;
585    } else    if (!strcmp(par_name, "axis_phi")) {
586        self->model->axis_phi.dispersion = dispersion;
587    } else {
588            PyErr_SetString(CStackedDisksModelError,
589                "CStackedDisksModel.set_dispersion expects a valid parameter name.");
590                return NULL;
591        }
592
593        DispersionVisitor* visitor = new DispersionVisitor();
594        PyObject * disp_dict = PyDict_New();
595        dispersion->accept_as_source(visitor, dispersion, disp_dict);
596        PyDict_SetItemString(self->dispersion, par_name, disp_dict);
597    return Py_BuildValue("i",1);
598}
599
600
601static PyMethodDef CStackedDisksModel_methods[] = {
602    {"run",      (PyCFunction)run     , METH_VARARGS,
603      "Evaluate the model at a given Q or Q, phi"},
604    {"runXY",      (PyCFunction)runXY     , METH_VARARGS,
605      "Evaluate the model at a given Q or Qx, Qy"},
606    {"calculate_ER",      (PyCFunction)calculate_ER     , METH_VARARGS,
607      "Evaluate the model at a given Q or Q, phi"},
608    {"calculate_VR",      (PyCFunction)calculate_VR     , METH_VARARGS,
609      "Evaluate VR"},   
610    {"evalDistribution",  (PyCFunction)evalDistribution , METH_VARARGS,
611      "Evaluate the model at a given Q or Qx, Qy vector "},
612    {"reset",    (PyCFunction)reset   , METH_VARARGS,
613      "Reset pair correlation"},
614    {"set_dispersion",      (PyCFunction)set_dispersion     , METH_VARARGS,
615      "Set the dispersion model for a given parameter"},
616   {NULL}
617};
618
619static PyTypeObject CStackedDisksModelType = {
620    PyObject_HEAD_INIT(NULL)
621    0,                         /*ob_size*/
622    "CStackedDisksModel",             /*tp_name*/
623    sizeof(CStackedDisksModel),             /*tp_basicsize*/
624    0,                         /*tp_itemsize*/
625    (destructor)CStackedDisksModel_dealloc, /*tp_dealloc*/
626    0,                         /*tp_print*/
627    0,                         /*tp_getattr*/
628    0,                         /*tp_setattr*/
629    0,                         /*tp_compare*/
630    0,                         /*tp_repr*/
631    0,                         /*tp_as_number*/
632    0,                         /*tp_as_sequence*/
633    0,                         /*tp_as_mapping*/
634    0,                         /*tp_hash */
635    0,                         /*tp_call*/
636    0,                         /*tp_str*/
637    0,                         /*tp_getattro*/
638    0,                         /*tp_setattro*/
639    0,                         /*tp_as_buffer*/
640    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_BASETYPE, /*tp_flags*/
641    "CStackedDisksModel objects",           /* tp_doc */
642    0,                         /* tp_traverse */
643    0,                         /* tp_clear */
644    0,                         /* tp_richcompare */
645    0,                         /* tp_weaklistoffset */
646    0,                         /* tp_iter */
647    0,                         /* tp_iternext */
648    CStackedDisksModel_methods,             /* tp_methods */
649    CStackedDisksModel_members,             /* tp_members */
650    0,                         /* tp_getset */
651    0,                         /* tp_base */
652    0,                         /* tp_dict */
653    0,                         /* tp_descr_get */
654    0,                         /* tp_descr_set */
655    0,                         /* tp_dictoffset */
656    (initproc)CStackedDisksModel_init,      /* tp_init */
657    0,                         /* tp_alloc */
658    CStackedDisksModel_new,                 /* tp_new */
659};
660
661
662//static PyMethodDef module_methods[] = {
663//    {NULL}
664//};
665
666/**
667 * Function used to add the model class to a module
668 * @param module: module to add the class to
669 */ 
670void addCStackedDisksModel(PyObject *module) {
671        PyObject *d;
672       
673    if (PyType_Ready(&CStackedDisksModelType) < 0)
674        return;
675
676    Py_INCREF(&CStackedDisksModelType);
677    PyModule_AddObject(module, "CStackedDisksModel", (PyObject *)&CStackedDisksModelType);
678   
679    d = PyModule_GetDict(module);
680    static char error_name[] = "CStackedDisksModel.error";
681    CStackedDisksModelError = PyErr_NewException(error_name, NULL, NULL);
682    PyDict_SetItemString(d, "CStackedDisksModelError", CStackedDisksModelError);
683}
684
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