source: sasview/src/sans/models/VesicleModel.py @ d09f0ae1

ESS_GUIESS_GUI_DocsESS_GUI_batch_fittingESS_GUI_bumps_abstractionESS_GUI_iss1116ESS_GUI_iss879ESS_GUI_iss959ESS_GUI_openclESS_GUI_orderingESS_GUI_sync_sascalccostrafo411magnetic_scattrelease-4.1.1release-4.1.2release-4.2.2release_4.0.1ticket-1009ticket-1094-headlessticket-1242-2d-resolutionticket-1243ticket-1249ticket885unittest-saveload
Last change on this file since d09f0ae1 was 400155b, checked in by gonzalezm, 10 years ago

Implementing request from ticket 261 - default number of bins in Annulus [Phi View] is now 36 and the first bin is now centered at 0 degrees

  • Property mode set to 100644
File size: 5.4 KB
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1##############################################################################
2# This software was developed by the University of Tennessee as part of the
3# Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
4# project funded by the US National Science Foundation.
5#
6# If you use DANSE applications to do scientific research that leads to
7# publication, we ask that you acknowledge the use of the software with the
8# following sentence:
9#
10# This work benefited from DANSE software developed under NSF award DMR-0520547
11#
12# Copyright 2008-2011, University of Tennessee
13##############################################################################
14
15"""
16Provide functionality for a C extension model
17
18.. WARNING::
19
20   THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
21   DO NOT MODIFY THIS FILE, MODIFY
22   src\sans\models\include\vesicle.h
23   AND RE-RUN THE GENERATOR SCRIPT
24"""
25
26from sans.models.BaseComponent import BaseComponent
27from sans.models.sans_extension.c_models import CVesicleModel
28
29def create_VesicleModel():
30    """
31       Create a model instance
32    """
33    obj = VesicleModel()
34    # CVesicleModel.__init__(obj) is called by
35    # the VesicleModel constructor
36    return obj
37
38class VesicleModel(CVesicleModel, BaseComponent):
39    """
40    Class that evaluates a VesicleModel model.
41    This file was auto-generated from src\sans\models\include\vesicle.h.
42    Refer to that file and the structure it contains
43    for details of the model.
44   
45    List of default parameters:
46
47    * scale           = 1.0
48    * radius          = 100.0 [A]
49    * thickness       = 30.0 [A]
50    * solv_sld        = 6.36e-06 [1/A^(2)]
51    * shell_sld       = 5e-07 [1/A^(2)]
52    * background      = 0.0 [1/cm]
53
54    """
55       
56    def __init__(self, multfactor=1):
57        """ Initialization """
58        self.__dict__ = {}
59       
60        # Initialize BaseComponent first, then sphere
61        BaseComponent.__init__(self)
62        #apply(CVesicleModel.__init__, (self,))
63
64        CVesicleModel.__init__(self)
65        self.is_multifunc = False
66                       
67        ## Name of the model
68        self.name = "VesicleModel"
69        ## Model description
70        self.description = """
71        Model parameters:    radius : the core radius of the vesicle
72                thickness: the shell thickness
73                core_sld: the core SLD
74                shell_sld: the shell SLD
75                background: incoherent background
76                scale : scale factor
77        """
78       
79        ## Parameter details [units, min, max]
80        self.details = {}
81        self.details['scale'] = ['', None, None]
82        self.details['radius'] = ['[A]', None, None]
83        self.details['thickness'] = ['[A]', None, None]
84        self.details['solv_sld'] = ['[1/A^(2)]', None, None]
85        self.details['shell_sld'] = ['[1/A^(2)]', None, None]
86        self.details['background'] = ['[1/cm]', None, None]
87
88        ## fittable parameters
89        self.fixed = ['radius.width',
90                      'thickness.width']
91       
92        ## non-fittable parameters
93        self.non_fittable = []
94       
95        ## parameters with orientation
96        self.orientation_params = []
97
98        ## parameters with magnetism
99        self.magnetic_params = []
100
101        self.category = None
102        self.multiplicity_info = None
103       
104    def __setstate__(self, state):
105        """
106        restore the state of a model from pickle
107        """
108        self.__dict__, self.params, self.dispersion = state
109       
110    def __reduce_ex__(self, proto):
111        """
112        Overwrite the __reduce_ex__ of PyTypeObject *type call in the init of
113        c model.
114        """
115        state = (self.__dict__, self.params, self.dispersion)
116        return (create_VesicleModel, tuple(), state, None, None)
117       
118    def clone(self):
119        """ Return a identical copy of self """
120        return self._clone(VesicleModel())   
121       
122    def run(self, x=0.0):
123        """
124        Evaluate the model
125       
126        :param x: input q, or [q,phi]
127       
128        :return: scattering function P(q)
129       
130        """
131        return CVesicleModel.run(self, x)
132   
133    def runXY(self, x=0.0):
134        """
135        Evaluate the model in cartesian coordinates
136       
137        :param x: input q, or [qx, qy]
138       
139        :return: scattering function P(q)
140       
141        """
142        return CVesicleModel.runXY(self, x)
143       
144    def evalDistribution(self, x):
145        """
146        Evaluate the model in cartesian coordinates
147       
148        :param x: input q[], or [qx[], qy[]]
149       
150        :return: scattering function P(q[])
151       
152        """
153        return CVesicleModel.evalDistribution(self, x)
154       
155    def calculate_ER(self):
156        """
157        Calculate the effective radius for P(q)*S(q)
158       
159        :return: the value of the effective radius
160       
161        """       
162        return CVesicleModel.calculate_ER(self)
163       
164    def calculate_VR(self):
165        """
166        Calculate the volf ratio for P(q)*S(q)
167       
168        :return: the value of the volf ratio
169       
170        """       
171        return CVesicleModel.calculate_VR(self)
172             
173    def set_dispersion(self, parameter, dispersion):
174        """
175        Set the dispersion object for a model parameter
176       
177        :param parameter: name of the parameter [string]
178        :param dispersion: dispersion object of type DispersionModel
179       
180        """
181        return CVesicleModel.set_dispersion(self,
182               parameter, dispersion.cdisp)
183       
184   
185# End of file
186
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