| 1 | """ |
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| 2 | Setup for SasView |
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| 3 | #TODO: Add checks to see that all the dependencies are on the system |
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| 4 | """ |
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| 5 | import sys |
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| 6 | import os |
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| 7 | from setuptools import setup, Extension |
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| 8 | from distutils.command.build_ext import build_ext |
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| 9 | from distutils.core import Command |
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| 10 | |
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| 11 | try: |
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| 12 | from numpy.distutils.misc_util import get_numpy_include_dirs |
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| 13 | NUMPY_INC = get_numpy_include_dirs()[0] |
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| 14 | except: |
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| 15 | try: |
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| 16 | import numpy |
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| 17 | NUMPY_INC = os.path.join(os.path.split(numpy.__file__)[0], |
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| 18 | "core","include") |
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| 19 | except: |
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| 20 | msg = "\nNumpy is needed to build SasView. " |
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| 21 | print msg, "Try easy_install numpy.\n %s" % str(sys.exc_value) |
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| 22 | sys.exit(0) |
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| 23 | |
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| 24 | # Manage version number ###################################### |
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| 25 | import sasview |
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| 26 | VERSION = sasview.__version__ |
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| 27 | ############################################################## |
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| 28 | |
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| 29 | package_dir = {} |
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| 30 | package_data = {} |
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| 31 | packages = [] |
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| 32 | ext_modules = [] |
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| 33 | |
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| 34 | # Remove all files that should be updated by this setup |
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| 35 | # We do this here because application updates these files from .sasview |
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| 36 | # except when there is no such file |
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| 37 | # Todo : make this list generic |
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| 38 | plugin_model_list = ['polynominal5.py', 'sph_bessel_jn.py', |
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| 39 | 'sum_Ap1_1_Ap2.py', 'sum_p1_p2.py', |
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| 40 | 'testmodel_2.py', 'testmodel.py', |
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| 41 | 'polynominal5.pyc', 'sph_bessel_jn.pyc', |
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| 42 | 'sum_Ap1_1_Ap2.pyc', 'sum_p1_p2.pyc', |
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| 43 | 'testmodel_2.pyc', 'testmodel.pyc', 'plugins.log'] |
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| 44 | sas_dir = os.path.join(os.path.expanduser("~"),'.sasview') |
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| 45 | if os.path.isdir(sas_dir): |
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| 46 | f_path = os.path.join(sas_dir, "sasview.log") |
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| 47 | if os.path.isfile(f_path): |
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| 48 | os.remove(f_path) |
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| 49 | f_path = os.path.join(sas_dir, "serialized_cat.json") |
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| 50 | if os.path.isfile(f_path): |
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| 51 | os.remove(f_path) |
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| 52 | f_path = os.path.join(sas_dir, 'config', "custom_config.py") |
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| 53 | if os.path.isfile(f_path): |
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| 54 | os.remove(f_path) |
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| 55 | f_path = os.path.join(sas_dir, 'plugin_models') |
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| 56 | if os.path.isdir(f_path): |
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| 57 | for f in os.listdir(f_path): |
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| 58 | if f in plugin_model_list: |
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| 59 | file_path = os.path.join(f_path, f) |
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| 60 | os.remove(file_path) |
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| 61 | |
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| 62 | # 'sys.maxsize' and 64bit: Not supported for python2.5 |
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| 63 | is_64bits = False |
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| 64 | if sys.version_info >= (2, 6): |
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| 65 | is_64bits = sys.maxsize > 2**32 |
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| 66 | |
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| 67 | enable_openmp = False |
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| 68 | |
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| 69 | if sys.platform =='darwin': |
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| 70 | if not is_64bits: |
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| 71 | # Disable OpenMP |
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| 72 | enable_openmp = False |
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| 73 | else: |
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| 74 | # Newer versions of Darwin don't support openmp |
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| 75 | try: |
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| 76 | darwin_ver = int(os.uname()[2].split('.')[0]) |
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| 77 | if darwin_ver >= 12: |
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| 78 | enable_openmp = False |
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| 79 | except: |
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| 80 | print "PROBLEM determining Darwin version" |
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| 81 | |
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| 82 | # Options to enable OpenMP |
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| 83 | copt = {'msvc': ['/openmp'], |
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| 84 | 'mingw32' : ['-fopenmp'], |
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| 85 | 'unix' : ['-fopenmp']} |
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| 86 | lopt = {'msvc': ['/MANIFEST'], |
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| 87 | 'mingw32' : ['-fopenmp'], |
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| 88 | 'unix' : ['-lgomp']} |
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| 89 | |
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| 90 | # Platform-specific link options |
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| 91 | platform_lopt = {'msvc' : ['/MANIFEST']} |
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| 92 | platform_copt = {} |
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| 93 | |
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| 94 | # Set copts to get compile working on OS X >= 10.9 using clang |
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| 95 | if sys.platform =='darwin': |
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| 96 | try: |
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| 97 | darwin_ver = int(os.uname()[2].split('.')[0]) |
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| 98 | if darwin_ver >= 13: |
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| 99 | platform_copt = {'unix' : ['-Wno-error=unused-command-line-argument-hard-error-in-future']} |
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| 100 | except: |
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| 101 | print "PROBLEM determining Darwin version" |
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| 102 | |
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| 103 | class DisableOpenMPCommand(Command): |
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| 104 | description = "The version of MinGW that comes with Anaconda does not come with OpenMP :( "\ |
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| 105 | "This commands means we can turn off compiling with OpenMP for this or any "\ |
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| 106 | "other reason." |
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| 107 | user_options = [] |
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| 108 | |
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| 109 | def initialize_options(self): |
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| 110 | self.cwd = None |
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| 111 | |
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| 112 | def finalize_options(self): |
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| 113 | self.cwd = os.getcwd() |
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| 114 | global enable_openmp |
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| 115 | enable_openmp = False |
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| 116 | |
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| 117 | def run(self): |
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| 118 | pass |
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| 119 | |
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| 120 | class build_ext_subclass( build_ext ): |
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| 121 | def build_extensions(self): |
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| 122 | # Get 64-bitness |
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| 123 | c = self.compiler.compiler_type |
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| 124 | print "Compiling with %s (64bit=%s)" % (c, str(is_64bits)) |
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| 125 | |
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| 126 | # OpenMP build options |
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| 127 | if enable_openmp: |
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| 128 | if copt.has_key(c): |
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| 129 | for e in self.extensions: |
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| 130 | e.extra_compile_args = copt[ c ] |
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| 131 | if lopt.has_key(c): |
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| 132 | for e in self.extensions: |
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| 133 | e.extra_link_args = lopt[ c ] |
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| 134 | |
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| 135 | # Platform-specific build options |
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| 136 | if platform_lopt.has_key(c): |
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| 137 | for e in self.extensions: |
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| 138 | e.extra_link_args = platform_lopt[ c ] |
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| 139 | |
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| 140 | if platform_copt.has_key(c): |
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| 141 | for e in self.extensions: |
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| 142 | e.extra_compile_args = platform_copt[ c ] |
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| 143 | |
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| 144 | |
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| 145 | build_ext.build_extensions(self) |
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| 146 | |
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| 147 | class BuildSphinxCommand(Command): |
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| 148 | description = "Build Sphinx documentation." |
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| 149 | user_options = [] |
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| 150 | |
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| 151 | def initialize_options(self): |
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| 152 | self.cwd = None |
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| 153 | |
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| 154 | def finalize_options(self): |
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| 155 | self.cwd = os.getcwd() |
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| 156 | |
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| 157 | def run(self): |
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| 158 | sys.path.append("docs/sphinx-docs") |
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| 159 | import build_sphinx |
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| 160 | |
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| 161 | build_sphinx.clean() |
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| 162 | build_sphinx.retrieve_user_docs() |
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| 163 | build_sphinx.apidoc() |
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| 164 | build_sphinx.build() |
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| 165 | |
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| 166 | # sas module |
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| 167 | package_dir["sas"] = os.path.join("src", "sas") |
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| 168 | packages.append("sas") |
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| 169 | |
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| 170 | # sas.invariant |
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| 171 | package_dir["sas.invariant"] = os.path.join("src", "sas", "invariant") |
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| 172 | packages.extend(["sas.invariant"]) |
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| 173 | |
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| 174 | # sas.guiframe |
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| 175 | guiframe_path = os.path.join("src", "sas", "guiframe") |
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| 176 | package_dir["sas.guiframe"] = guiframe_path |
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| 177 | package_dir["sas.guiframe.local_perspectives"] = os.path.join(os.path.join(guiframe_path, "local_perspectives")) |
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| 178 | package_data["sas.guiframe"] = ['images/*', 'media/*'] |
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| 179 | packages.extend(["sas.guiframe", "sas.guiframe.local_perspectives"]) |
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| 180 | # build local plugin |
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| 181 | for d in os.listdir(os.path.join(guiframe_path, "local_perspectives")): |
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| 182 | if d not in ['.svn','__init__.py', '__init__.pyc']: |
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| 183 | package_name = "sas.guiframe.local_perspectives." + d |
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| 184 | packages.append(package_name) |
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| 185 | package_dir[package_name] = os.path.join(guiframe_path, "local_perspectives", d) |
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| 186 | |
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| 187 | # sas.dataloader |
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| 188 | package_dir["sas.dataloader"] = os.path.join("src", "sas", "dataloader") |
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| 189 | package_data["sas.dataloader.readers"] = ['defaults.json','schema/*.xsd'] |
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| 190 | packages.extend(["sas.dataloader","sas.dataloader.readers","sas.dataloader.readers.schema"]) |
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| 191 | |
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| 192 | # sas.calculator |
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| 193 | package_dir["sas.calculator"] =os.path.join("src", "sas", "calculator") |
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| 194 | packages.extend(["sas.calculator"]) |
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| 195 | |
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| 196 | # sas.pr |
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| 197 | numpy_incl_path = os.path.join(NUMPY_INC, "numpy") |
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| 198 | srcdir = os.path.join("src", "sas", "pr", "c_extensions") |
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| 199 | package_dir["sas.pr.core"] = srcdir |
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| 200 | package_dir["sas.pr"] = os.path.join("src","sas", "pr") |
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| 201 | packages.extend(["sas.pr","sas.pr.core"]) |
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| 202 | ext_modules.append( Extension("sas.pr.core.pr_inversion", |
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| 203 | sources = [os.path.join(srcdir, "Cinvertor.c"), |
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| 204 | os.path.join(srcdir, "invertor.c"), |
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| 205 | ], |
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| 206 | include_dirs=[numpy_incl_path], |
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| 207 | ) ) |
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| 208 | |
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| 209 | # sas.fit (park integration) |
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| 210 | package_dir["sas.fit"] = os.path.join("src", "sas", "fit") |
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| 211 | packages.append("sas.fit") |
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| 212 | |
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| 213 | # Perspectives |
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| 214 | package_dir["sas.perspectives"] = os.path.join("src", "sas", "perspectives") |
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| 215 | package_dir["sas.perspectives.pr"] = os.path.join("src", "sas", "perspectives", "pr") |
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| 216 | packages.extend(["sas.perspectives","sas.perspectives.pr"]) |
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| 217 | package_data["sas.perspectives.pr"] = ['images/*'] |
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| 218 | |
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| 219 | package_dir["sas.perspectives.invariant"] = os.path.join("src", "sas", "perspectives", "invariant") |
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| 220 | packages.extend(["sas.perspectives.invariant"]) |
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| 221 | package_data['sas.perspectives.invariant'] = [os.path.join("media",'*')] |
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| 222 | |
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| 223 | package_dir["sas.perspectives.fitting"] = os.path.join("src", "sas", "perspectives", "fitting") |
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| 224 | package_dir["sas.perspectives.fitting.plugin_models"] = os.path.join("src", "sas", "perspectives", "fitting", "plugin_models") |
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| 225 | packages.extend(["sas.perspectives.fitting", |
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| 226 | "sas.perspectives.fitting.plugin_models"]) |
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| 227 | package_data['sas.perspectives.fitting'] = ['media/*','plugin_models/*'] |
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| 228 | |
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| 229 | packages.extend(["sas.perspectives", "sas.perspectives.calculator"]) |
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| 230 | package_data['sas.perspectives.calculator'] = ['images/*', 'media/*'] |
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| 231 | |
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| 232 | # Data util |
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| 233 | package_dir["data_util"] = os.path.join("src", "sas", "data_util") |
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| 234 | packages.append("sas.data_util") |
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| 235 | |
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| 236 | # Plottools |
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| 237 | package_dir["sas.plottools"] = os.path.join("src", "sas", "plottools") |
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| 238 | packages.append("sas.plottools") |
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| 239 | |
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| 240 | # Park 1.2.1 |
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| 241 | package_dir["park"]="park-1.2.1/park" |
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| 242 | packages.extend(["park"]) |
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| 243 | package_data["park"] = ['park-1.2.1/*.txt', 'park-1.2.1/park.epydoc'] |
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| 244 | ext_modules.append( Extension("park._modeling", |
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| 245 | sources = [ os.path.join("park-1.2.1", |
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| 246 | "park", "lib", "modeling.cc"), |
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| 247 | os.path.join("park-1.2.1", |
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| 248 | "park", "lib", "resolution.c"), |
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| 249 | ], |
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| 250 | ) ) |
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| 251 | |
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| 252 | # sas models |
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| 253 | includedir = os.path.join("src", "sas", "models", "include") |
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| 254 | igordir = os.path.join("src", "sas", "models", "c_extension", "libigor") |
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| 255 | cephes_dir = os.path.join("src", "sas", "models", "c_extension", "cephes") |
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| 256 | c_model_dir = os.path.join("src", "sas", "models", "c_extension", "c_models") |
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| 257 | smear_dir = os.path.join("src", "sas", "models", "c_extension", "c_smearer") |
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| 258 | gen_dir = os.path.join("src", "sas", "models", "c_extension", "c_gen") |
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| 259 | wrapper_dir = os.path.join("src", "sas", "models", "c_extension", "python_wrapper", "generated") |
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| 260 | model_dir = os.path.join("src", "sas","models") |
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| 261 | |
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| 262 | if os.path.isdir(wrapper_dir): |
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| 263 | for file in os.listdir(wrapper_dir): |
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| 264 | file_path = os.path.join(wrapper_dir, file) |
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| 265 | os.remove(file_path) |
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| 266 | else: |
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| 267 | os.makedirs(wrapper_dir) |
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| 268 | sys.path.append(os.path.join("src", "sas", "models", "c_extension", "python_wrapper")) |
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| 269 | from wrapping import generate_wrappers |
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| 270 | generate_wrappers(header_dir = includedir, |
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| 271 | output_dir = model_dir, |
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| 272 | c_wrapper_dir = wrapper_dir) |
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| 273 | |
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| 274 | IGNORED_FILES = [".svn"] |
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| 275 | if not os.name=='nt': |
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| 276 | IGNORED_FILES.extend(["gamma_win.c","winFuncs.c"]) |
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| 277 | |
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| 278 | EXTENSIONS = [".c", ".cpp"] |
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| 279 | |
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| 280 | def append_file(file_list, dir_path): |
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| 281 | """ |
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| 282 | Add sources file to sources |
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| 283 | """ |
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| 284 | for f in os.listdir(dir_path): |
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| 285 | if os.path.isfile(os.path.join(dir_path, f)): |
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| 286 | _, ext = os.path.splitext(f) |
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| 287 | if ext.lower() in EXTENSIONS and f not in IGNORED_FILES: |
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| 288 | file_list.append(os.path.join(dir_path, f)) |
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| 289 | elif os.path.isdir(os.path.join(dir_path, f)) and \ |
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| 290 | not f.startswith("."): |
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| 291 | sub_dir = os.path.join(dir_path, f) |
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| 292 | for new_f in os.listdir(sub_dir): |
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| 293 | if os.path.isfile(os.path.join(sub_dir, new_f)): |
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| 294 | _, ext = os.path.splitext(new_f) |
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| 295 | if ext.lower() in EXTENSIONS and\ |
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| 296 | new_f not in IGNORED_FILES: |
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| 297 | file_list.append(os.path.join(sub_dir, new_f)) |
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| 298 | |
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| 299 | model_sources = [] |
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| 300 | append_file(file_list=model_sources, dir_path=igordir) |
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| 301 | append_file(file_list=model_sources, dir_path=c_model_dir) |
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| 302 | append_file(file_list=model_sources, dir_path=wrapper_dir) |
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| 303 | |
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| 304 | smear_sources = [] |
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| 305 | append_file(file_list=smear_sources, dir_path=smear_dir) |
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| 306 | |
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| 307 | package_dir["sas.models"] = model_dir |
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| 308 | package_dir["sas.models.sas_extension"] = os.path.join("src", "sas", "models", "sas_extension") |
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| 309 | package_data['sas.models'] = [os.path.join('media', "*.*")] |
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| 310 | package_data['sas.models'] += [os.path.join('media','img', "*.*")] |
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| 311 | packages.extend(["sas.models","sas.models.sas_extension"]) |
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| 312 | |
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| 313 | smearer_sources = [os.path.join(smear_dir, "smearer.cpp"), |
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| 314 | os.path.join(smear_dir, "smearer_module.cpp")] |
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| 315 | geni_sources = [os.path.join(gen_dir, "sld2i_module.cpp")] |
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| 316 | if os.name=='nt': |
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| 317 | smearer_sources.append(os.path.join(igordir, "winFuncs.c")) |
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| 318 | geni_sources.append(os.path.join(igordir, "winFuncs.c")) |
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| 319 | |
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| 320 | c_models = [ |
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| 321 | Extension("sas.models.sas_extension.c_models", |
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| 322 | sources=model_sources, |
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| 323 | include_dirs=[ |
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| 324 | igordir, includedir, c_model_dir, numpy_incl_path, cephes_dir |
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| 325 | ], |
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| 326 | ), |
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| 327 | |
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| 328 | # Smearer extension |
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| 329 | Extension("sas.models.sas_extension.smearer", |
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| 330 | sources = smearer_sources, |
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| 331 | include_dirs=[igordir, smear_dir, numpy_incl_path], |
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| 332 | ), |
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| 333 | |
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| 334 | Extension("sas.models.sas_extension.smearer2d_helper", |
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| 335 | sources = [ |
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| 336 | os.path.join(smear_dir, "smearer2d_helper_module.cpp"), |
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| 337 | os.path.join(smear_dir, "smearer2d_helper.cpp"), |
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| 338 | os.path.join(igordir, "winFuncs.c"), |
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| 339 | ], |
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| 340 | include_dirs=[smear_dir, numpy_incl_path], |
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| 341 | ), |
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| 342 | |
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| 343 | Extension("sas.models.sas_extension.sld2i", |
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| 344 | sources = [ |
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| 345 | os.path.join(gen_dir, "sld2i_module.cpp"), |
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| 346 | os.path.join(gen_dir, "sld2i.cpp"), |
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| 347 | os.path.join(c_model_dir, "libfunc.c"), |
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| 348 | os.path.join(c_model_dir, "librefl.c"), |
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| 349 | os.path.join(igordir, "winFuncs.c"), |
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| 350 | ], |
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| 351 | include_dirs=[gen_dir, includedir, c_model_dir, numpy_incl_path], |
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| 352 | ), |
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| 353 | ] |
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| 354 | |
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| 355 | # Comment out the following to avoid rebuilding all the models |
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| 356 | ext_modules.extend(c_models) |
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| 357 | |
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| 358 | # SasView |
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| 359 | |
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| 360 | package_dir["sas.sasview"] = "sasview" |
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| 361 | package_data['sas.sasview'] = ['images/*', 'media/*', 'test/*', |
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| 362 | 'default_categories.json'] |
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| 363 | packages.append("sas.sasview") |
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| 364 | |
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| 365 | required = [ |
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| 366 | 'bumps>=0.7.5.4', 'periodictable>=1.3.1', 'pyparsing<2.0.0', |
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| 367 | |
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| 368 | # 'lxml>=2.2.2', |
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| 369 | 'lxml', |
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| 370 | |
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| 371 | ## The following dependecies won't install automatically, so assume them |
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| 372 | ## The numbers should be bumped up for matplotlib and wxPython as well. |
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| 373 | # 'numpy>=1.4.1', 'scipy>=0.7.2', 'matplotlib>=0.99.1.1', |
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| 374 | # 'wxPython>=2.8.11', 'pil', |
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| 375 | ] |
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| 376 | |
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| 377 | if os.name=='nt': |
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| 378 | required.extend(['html5lib', 'reportlab']) |
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| 379 | else: |
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| 380 | required.extend(['pil']) |
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| 381 | |
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| 382 | # Set up SasView |
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| 383 | setup( |
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| 384 | name="sasview", |
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| 385 | version = VERSION, |
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| 386 | description = "SasView application", |
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| 387 | author = "University of Tennessee", |
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| 388 | author_email = "sansdanse@gmail.com", |
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| 389 | url = "http://sasview.org", |
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| 390 | license = "PSF", |
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| 391 | keywords = "small-angle x-ray and neutron scattering analysis", |
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| 392 | download_url = "https://sourceforge.net/projects/sansviewproject/files/", |
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| 393 | package_dir = package_dir, |
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| 394 | packages = packages, |
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| 395 | package_data = package_data, |
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| 396 | ext_modules = ext_modules, |
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| 397 | install_requires = required, |
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| 398 | zip_safe = False, |
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| 399 | entry_points = { |
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| 400 | 'console_scripts':[ |
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| 401 | "sasview = sas.sasview.sasview:run", |
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| 402 | ] |
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| 403 | }, |
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| 404 | cmdclass = {'build_ext': build_ext_subclass, |
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| 405 | 'docs': BuildSphinxCommand, |
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| 406 | 'disable_openmp': DisableOpenMPCommand} |
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| 407 | ) |
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