| 1 | """ |
|---|
| 2 | Setup for SasView |
|---|
| 3 | #TODO: Add checks to see that all the dependencies are on the system |
|---|
| 4 | """ |
|---|
| 5 | import sys |
|---|
| 6 | import os |
|---|
| 7 | from setuptools import setup, Extension |
|---|
| 8 | from distutils.command.build_ext import build_ext |
|---|
| 9 | from distutils.core import Command |
|---|
| 10 | |
|---|
| 11 | try: |
|---|
| 12 | from numpy.distutils.misc_util import get_numpy_include_dirs |
|---|
| 13 | NUMPY_INC = get_numpy_include_dirs()[0] |
|---|
| 14 | except: |
|---|
| 15 | try: |
|---|
| 16 | import numpy |
|---|
| 17 | NUMPY_INC = os.path.join(os.path.split(numpy.__file__)[0], |
|---|
| 18 | "core","include") |
|---|
| 19 | except: |
|---|
| 20 | msg = "\nNumpy is needed to build SasView. " |
|---|
| 21 | print msg, "Try easy_install numpy.\n %s" % str(sys.exc_value) |
|---|
| 22 | sys.exit(0) |
|---|
| 23 | |
|---|
| 24 | # Manage version number ###################################### |
|---|
| 25 | import sasview |
|---|
| 26 | VERSION = sasview.__version__ |
|---|
| 27 | ############################################################## |
|---|
| 28 | |
|---|
| 29 | package_dir = {} |
|---|
| 30 | package_data = {} |
|---|
| 31 | packages = [] |
|---|
| 32 | ext_modules = [] |
|---|
| 33 | |
|---|
| 34 | # Remove all files that should be updated by this setup |
|---|
| 35 | # We do this here because application updates these files from .sasview |
|---|
| 36 | # except when there is no such file |
|---|
| 37 | # Todo : make this list generic |
|---|
| 38 | plugin_model_list = ['polynominal5.py', 'sph_bessel_jn.py', |
|---|
| 39 | 'sum_Ap1_1_Ap2.py', 'sum_p1_p2.py', |
|---|
| 40 | 'testmodel_2.py', 'testmodel.py', |
|---|
| 41 | 'polynominal5.pyc', 'sph_bessel_jn.pyc', |
|---|
| 42 | 'sum_Ap1_1_Ap2.pyc', 'sum_p1_p2.pyc', |
|---|
| 43 | 'testmodel_2.pyc', 'testmodel.pyc', 'plugins.log'] |
|---|
| 44 | sas_dir = os.path.join(os.path.expanduser("~"),'.sasview') |
|---|
| 45 | if os.path.isdir(sas_dir): |
|---|
| 46 | f_path = os.path.join(sas_dir, "sasview.log") |
|---|
| 47 | if os.path.isfile(f_path): |
|---|
| 48 | os.remove(f_path) |
|---|
| 49 | f_path = os.path.join(sas_dir, "serialized_cat.json") |
|---|
| 50 | if os.path.isfile(f_path): |
|---|
| 51 | os.remove(f_path) |
|---|
| 52 | f_path = os.path.join(sas_dir, 'config', "custom_config.py") |
|---|
| 53 | if os.path.isfile(f_path): |
|---|
| 54 | os.remove(f_path) |
|---|
| 55 | f_path = os.path.join(sas_dir, 'plugin_models') |
|---|
| 56 | if os.path.isdir(f_path): |
|---|
| 57 | for f in os.listdir(f_path): |
|---|
| 58 | if f in plugin_model_list: |
|---|
| 59 | file_path = os.path.join(f_path, f) |
|---|
| 60 | os.remove(file_path) |
|---|
| 61 | |
|---|
| 62 | # 'sys.maxsize' and 64bit: Not supported for python2.5 |
|---|
| 63 | is_64bits = False |
|---|
| 64 | if sys.version_info >= (2, 6): |
|---|
| 65 | is_64bits = sys.maxsize > 2**32 |
|---|
| 66 | |
|---|
| 67 | enable_openmp = False |
|---|
| 68 | |
|---|
| 69 | if sys.platform =='darwin': |
|---|
| 70 | if not is_64bits: |
|---|
| 71 | # Disable OpenMP |
|---|
| 72 | enable_openmp = False |
|---|
| 73 | else: |
|---|
| 74 | # Newer versions of Darwin don't support openmp |
|---|
| 75 | try: |
|---|
| 76 | darwin_ver = int(os.uname()[2].split('.')[0]) |
|---|
| 77 | if darwin_ver >= 12: |
|---|
| 78 | enable_openmp = False |
|---|
| 79 | except: |
|---|
| 80 | print "PROBLEM determining Darwin version" |
|---|
| 81 | |
|---|
| 82 | # Options to enable OpenMP |
|---|
| 83 | copt = {'msvc': ['/openmp'], |
|---|
| 84 | 'mingw32' : ['-fopenmp'], |
|---|
| 85 | 'unix' : ['-fopenmp']} |
|---|
| 86 | lopt = {'msvc': ['/MANIFEST'], |
|---|
| 87 | 'mingw32' : ['-fopenmp'], |
|---|
| 88 | 'unix' : ['-lgomp']} |
|---|
| 89 | |
|---|
| 90 | # Platform-specific link options |
|---|
| 91 | platform_lopt = {'msvc' : ['/MANIFEST']} |
|---|
| 92 | platform_copt = {} |
|---|
| 93 | |
|---|
| 94 | # Set copts to get compile working on OS X >= 10.9 using clang |
|---|
| 95 | if sys.platform =='darwin': |
|---|
| 96 | try: |
|---|
| 97 | darwin_ver = int(os.uname()[2].split('.')[0]) |
|---|
| 98 | if darwin_ver >= 13: |
|---|
| 99 | platform_copt = {'unix' : ['-Wno-error=unused-command-line-argument-hard-error-in-future']} |
|---|
| 100 | except: |
|---|
| 101 | print "PROBLEM determining Darwin version" |
|---|
| 102 | |
|---|
| 103 | class DisableOpenMPCommand(Command): |
|---|
| 104 | description = "The version of MinGW that comes with Anaconda does not come with OpenMP :( "\ |
|---|
| 105 | "This commands means we can turn off compiling with OpenMP for this or any "\ |
|---|
| 106 | "other reason." |
|---|
| 107 | user_options = [] |
|---|
| 108 | |
|---|
| 109 | def initialize_options(self): |
|---|
| 110 | self.cwd = None |
|---|
| 111 | |
|---|
| 112 | def finalize_options(self): |
|---|
| 113 | self.cwd = os.getcwd() |
|---|
| 114 | global enable_openmp |
|---|
| 115 | enable_openmp = False |
|---|
| 116 | |
|---|
| 117 | def run(self): |
|---|
| 118 | pass |
|---|
| 119 | |
|---|
| 120 | class build_ext_subclass( build_ext ): |
|---|
| 121 | def build_extensions(self): |
|---|
| 122 | # Get 64-bitness |
|---|
| 123 | c = self.compiler.compiler_type |
|---|
| 124 | print "Compiling with %s (64bit=%s)" % (c, str(is_64bits)) |
|---|
| 125 | |
|---|
| 126 | # OpenMP build options |
|---|
| 127 | if enable_openmp: |
|---|
| 128 | if copt.has_key(c): |
|---|
| 129 | for e in self.extensions: |
|---|
| 130 | e.extra_compile_args = copt[ c ] |
|---|
| 131 | if lopt.has_key(c): |
|---|
| 132 | for e in self.extensions: |
|---|
| 133 | e.extra_link_args = lopt[ c ] |
|---|
| 134 | |
|---|
| 135 | # Platform-specific build options |
|---|
| 136 | if platform_lopt.has_key(c): |
|---|
| 137 | for e in self.extensions: |
|---|
| 138 | e.extra_link_args = platform_lopt[ c ] |
|---|
| 139 | |
|---|
| 140 | if platform_copt.has_key(c): |
|---|
| 141 | for e in self.extensions: |
|---|
| 142 | e.extra_compile_args = platform_copt[ c ] |
|---|
| 143 | |
|---|
| 144 | |
|---|
| 145 | build_ext.build_extensions(self) |
|---|
| 146 | |
|---|
| 147 | class BuildSphinxCommand(Command): |
|---|
| 148 | description = "Build Sphinx documentation." |
|---|
| 149 | user_options = [] |
|---|
| 150 | |
|---|
| 151 | def initialize_options(self): |
|---|
| 152 | self.cwd = None |
|---|
| 153 | |
|---|
| 154 | def finalize_options(self): |
|---|
| 155 | self.cwd = os.getcwd() |
|---|
| 156 | |
|---|
| 157 | def run(self): |
|---|
| 158 | sys.path.append("docs/sphinx-docs") |
|---|
| 159 | import build_sphinx |
|---|
| 160 | build_sphinx.rebuild() |
|---|
| 161 | |
|---|
| 162 | # sas module |
|---|
| 163 | package_dir["sas"] = os.path.join("src", "sas") |
|---|
| 164 | packages.append("sas") |
|---|
| 165 | |
|---|
| 166 | # sas.invariant |
|---|
| 167 | package_dir["sas.invariant"] = os.path.join("src", "sas", "invariant") |
|---|
| 168 | packages.extend(["sas.invariant"]) |
|---|
| 169 | |
|---|
| 170 | # sas.guiframe |
|---|
| 171 | guiframe_path = os.path.join("src", "sas", "guiframe") |
|---|
| 172 | package_dir["sas.guiframe"] = guiframe_path |
|---|
| 173 | package_dir["sas.guiframe.local_perspectives"] = os.path.join(os.path.join(guiframe_path, "local_perspectives")) |
|---|
| 174 | package_data["sas.guiframe"] = ['images/*', 'media/*'] |
|---|
| 175 | packages.extend(["sas.guiframe", "sas.guiframe.local_perspectives"]) |
|---|
| 176 | # build local plugin |
|---|
| 177 | for d in os.listdir(os.path.join(guiframe_path, "local_perspectives")): |
|---|
| 178 | if d not in ['.svn','__init__.py', '__init__.pyc']: |
|---|
| 179 | package_name = "sas.guiframe.local_perspectives." + d |
|---|
| 180 | packages.append(package_name) |
|---|
| 181 | package_dir[package_name] = os.path.join(guiframe_path, "local_perspectives", d) |
|---|
| 182 | |
|---|
| 183 | # sas.dataloader |
|---|
| 184 | package_dir["sas.dataloader"] = os.path.join("src", "sas", "dataloader") |
|---|
| 185 | package_data["sas.dataloader.readers"] = ['defaults.json','schema/*.xsd'] |
|---|
| 186 | packages.extend(["sas.dataloader","sas.dataloader.readers","sas.dataloader.readers.schema"]) |
|---|
| 187 | |
|---|
| 188 | # sas.calculator |
|---|
| 189 | package_dir["sas.calculator"] =os.path.join("src", "sas", "calculator") |
|---|
| 190 | packages.extend(["sas.calculator"]) |
|---|
| 191 | |
|---|
| 192 | # sas.pr |
|---|
| 193 | numpy_incl_path = os.path.join(NUMPY_INC, "numpy") |
|---|
| 194 | srcdir = os.path.join("src", "sas", "pr", "c_extensions") |
|---|
| 195 | package_dir["sas.pr.core"] = srcdir |
|---|
| 196 | package_dir["sas.pr"] = os.path.join("src","sas", "pr") |
|---|
| 197 | packages.extend(["sas.pr","sas.pr.core"]) |
|---|
| 198 | ext_modules.append( Extension("sas.pr.core.pr_inversion", |
|---|
| 199 | sources = [os.path.join(srcdir, "Cinvertor.c"), |
|---|
| 200 | os.path.join(srcdir, "invertor.c"), |
|---|
| 201 | ], |
|---|
| 202 | include_dirs=[numpy_incl_path], |
|---|
| 203 | ) ) |
|---|
| 204 | |
|---|
| 205 | # sas.fit |
|---|
| 206 | package_dir["sas.fit"] = os.path.join("src", "sas", "fit") |
|---|
| 207 | packages.append("sas.fit") |
|---|
| 208 | |
|---|
| 209 | # Perspectives |
|---|
| 210 | package_dir["sas.perspectives"] = os.path.join("src", "sas", "perspectives") |
|---|
| 211 | package_dir["sas.perspectives.pr"] = os.path.join("src", "sas", "perspectives", "pr") |
|---|
| 212 | packages.extend(["sas.perspectives","sas.perspectives.pr"]) |
|---|
| 213 | package_data["sas.perspectives.pr"] = ['images/*'] |
|---|
| 214 | |
|---|
| 215 | package_dir["sas.perspectives.invariant"] = os.path.join("src", "sas", "perspectives", "invariant") |
|---|
| 216 | packages.extend(["sas.perspectives.invariant"]) |
|---|
| 217 | package_data['sas.perspectives.invariant'] = [os.path.join("media",'*')] |
|---|
| 218 | |
|---|
| 219 | package_dir["sas.perspectives.fitting"] = os.path.join("src", "sas", "perspectives", "fitting") |
|---|
| 220 | package_dir["sas.perspectives.fitting.plugin_models"] = os.path.join("src", "sas", "perspectives", "fitting", "plugin_models") |
|---|
| 221 | packages.extend(["sas.perspectives.fitting", |
|---|
| 222 | "sas.perspectives.fitting.plugin_models"]) |
|---|
| 223 | package_data['sas.perspectives.fitting'] = ['media/*','plugin_models/*'] |
|---|
| 224 | |
|---|
| 225 | packages.extend(["sas.perspectives", "sas.perspectives.calculator"]) |
|---|
| 226 | package_data['sas.perspectives.calculator'] = ['images/*', 'media/*'] |
|---|
| 227 | |
|---|
| 228 | # Data util |
|---|
| 229 | package_dir["data_util"] = os.path.join("src", "sas", "data_util") |
|---|
| 230 | packages.append("sas.data_util") |
|---|
| 231 | |
|---|
| 232 | # Plottools |
|---|
| 233 | package_dir["sas.plottools"] = os.path.join("src", "sas", "plottools") |
|---|
| 234 | packages.append("sas.plottools") |
|---|
| 235 | |
|---|
| 236 | # sas models |
|---|
| 237 | includedir = os.path.join("src", "sas", "models", "include") |
|---|
| 238 | igordir = os.path.join("src", "sas", "models", "c_extension", "libigor") |
|---|
| 239 | cephes_dir = os.path.join("src", "sas", "models", "c_extension", "cephes") |
|---|
| 240 | c_model_dir = os.path.join("src", "sas", "models", "c_extension", "c_models") |
|---|
| 241 | smear_dir = os.path.join("src", "sas", "models", "c_extension", "c_smearer") |
|---|
| 242 | gen_dir = os.path.join("src", "sas", "models", "c_extension", "c_gen") |
|---|
| 243 | wrapper_dir = os.path.join("src", "sas", "models", "c_extension", "python_wrapper", "generated") |
|---|
| 244 | model_dir = os.path.join("src", "sas","models") |
|---|
| 245 | |
|---|
| 246 | if os.path.isdir(wrapper_dir): |
|---|
| 247 | for file in os.listdir(wrapper_dir): |
|---|
| 248 | file_path = os.path.join(wrapper_dir, file) |
|---|
| 249 | os.remove(file_path) |
|---|
| 250 | else: |
|---|
| 251 | os.makedirs(wrapper_dir) |
|---|
| 252 | sys.path.append(os.path.join("src", "sas", "models", "c_extension", "python_wrapper")) |
|---|
| 253 | from wrapping import generate_wrappers |
|---|
| 254 | generate_wrappers(header_dir = includedir, |
|---|
| 255 | output_dir = model_dir, |
|---|
| 256 | c_wrapper_dir = wrapper_dir) |
|---|
| 257 | |
|---|
| 258 | IGNORED_FILES = [".svn"] |
|---|
| 259 | if not os.name=='nt': |
|---|
| 260 | IGNORED_FILES.extend(["gamma_win.c","winFuncs.c"]) |
|---|
| 261 | |
|---|
| 262 | EXTENSIONS = [".c", ".cpp"] |
|---|
| 263 | |
|---|
| 264 | def append_file(file_list, dir_path): |
|---|
| 265 | """ |
|---|
| 266 | Add sources file to sources |
|---|
| 267 | """ |
|---|
| 268 | for f in os.listdir(dir_path): |
|---|
| 269 | if os.path.isfile(os.path.join(dir_path, f)): |
|---|
| 270 | _, ext = os.path.splitext(f) |
|---|
| 271 | if ext.lower() in EXTENSIONS and f not in IGNORED_FILES: |
|---|
| 272 | file_list.append(os.path.join(dir_path, f)) |
|---|
| 273 | elif os.path.isdir(os.path.join(dir_path, f)) and \ |
|---|
| 274 | not f.startswith("."): |
|---|
| 275 | sub_dir = os.path.join(dir_path, f) |
|---|
| 276 | for new_f in os.listdir(sub_dir): |
|---|
| 277 | if os.path.isfile(os.path.join(sub_dir, new_f)): |
|---|
| 278 | _, ext = os.path.splitext(new_f) |
|---|
| 279 | if ext.lower() in EXTENSIONS and\ |
|---|
| 280 | new_f not in IGNORED_FILES: |
|---|
| 281 | file_list.append(os.path.join(sub_dir, new_f)) |
|---|
| 282 | |
|---|
| 283 | model_sources = [] |
|---|
| 284 | append_file(file_list=model_sources, dir_path=igordir) |
|---|
| 285 | append_file(file_list=model_sources, dir_path=c_model_dir) |
|---|
| 286 | append_file(file_list=model_sources, dir_path=wrapper_dir) |
|---|
| 287 | |
|---|
| 288 | smear_sources = [] |
|---|
| 289 | append_file(file_list=smear_sources, dir_path=smear_dir) |
|---|
| 290 | |
|---|
| 291 | package_dir["sas.models"] = model_dir |
|---|
| 292 | package_dir["sas.models.sas_extension"] = os.path.join("src", "sas", "models", "sas_extension") |
|---|
| 293 | package_data['sas.models'] = [os.path.join('media', "*.*")] |
|---|
| 294 | package_data['sas.models'] += [os.path.join('media','img', "*.*")] |
|---|
| 295 | packages.extend(["sas.models","sas.models.sas_extension"]) |
|---|
| 296 | |
|---|
| 297 | smearer_sources = [os.path.join(smear_dir, "smearer.cpp"), |
|---|
| 298 | os.path.join(smear_dir, "smearer_module.cpp")] |
|---|
| 299 | geni_sources = [os.path.join(gen_dir, "sld2i_module.cpp")] |
|---|
| 300 | if os.name=='nt': |
|---|
| 301 | smearer_sources.append(os.path.join(igordir, "winFuncs.c")) |
|---|
| 302 | geni_sources.append(os.path.join(igordir, "winFuncs.c")) |
|---|
| 303 | |
|---|
| 304 | c_models = [ |
|---|
| 305 | Extension("sas.models.sas_extension.c_models", |
|---|
| 306 | sources=model_sources, |
|---|
| 307 | include_dirs=[ |
|---|
| 308 | igordir, includedir, c_model_dir, numpy_incl_path, cephes_dir |
|---|
| 309 | ], |
|---|
| 310 | ), |
|---|
| 311 | |
|---|
| 312 | # Smearer extension |
|---|
| 313 | Extension("sas.models.sas_extension.smearer", |
|---|
| 314 | sources = smearer_sources, |
|---|
| 315 | include_dirs=[igordir, smear_dir, numpy_incl_path], |
|---|
| 316 | ), |
|---|
| 317 | |
|---|
| 318 | Extension("sas.models.sas_extension.smearer2d_helper", |
|---|
| 319 | sources = [ |
|---|
| 320 | os.path.join(smear_dir, "smearer2d_helper_module.cpp"), |
|---|
| 321 | os.path.join(smear_dir, "smearer2d_helper.cpp"), |
|---|
| 322 | os.path.join(igordir, "winFuncs.c"), |
|---|
| 323 | ], |
|---|
| 324 | include_dirs=[smear_dir, numpy_incl_path], |
|---|
| 325 | ), |
|---|
| 326 | |
|---|
| 327 | Extension("sas.models.sas_extension.sld2i", |
|---|
| 328 | sources = [ |
|---|
| 329 | os.path.join(gen_dir, "sld2i_module.cpp"), |
|---|
| 330 | os.path.join(gen_dir, "sld2i.cpp"), |
|---|
| 331 | os.path.join(c_model_dir, "libfunc.c"), |
|---|
| 332 | os.path.join(c_model_dir, "librefl.c"), |
|---|
| 333 | os.path.join(igordir, "winFuncs.c"), |
|---|
| 334 | ], |
|---|
| 335 | include_dirs=[gen_dir, includedir, c_model_dir, numpy_incl_path], |
|---|
| 336 | ), |
|---|
| 337 | ] |
|---|
| 338 | |
|---|
| 339 | # Comment out the following to avoid rebuilding all the models |
|---|
| 340 | ext_modules.extend(c_models) |
|---|
| 341 | |
|---|
| 342 | # SasView |
|---|
| 343 | |
|---|
| 344 | package_dir["sas.sasview"] = "sasview" |
|---|
| 345 | package_data['sas.sasview'] = ['images/*', |
|---|
| 346 | 'media/*', |
|---|
| 347 | 'test/*.txt', |
|---|
| 348 | 'test/1d_data/*', |
|---|
| 349 | 'test/2d_data/*', |
|---|
| 350 | 'test/save_states/*', |
|---|
| 351 | 'test/upcoming_formats/*', |
|---|
| 352 | 'default_categories.json'] |
|---|
| 353 | packages.append("sas.sasview") |
|---|
| 354 | |
|---|
| 355 | required = [ |
|---|
| 356 | 'bumps>=0.7.5.6', 'periodictable>=1.3.1', 'pyparsing<2.0.0', |
|---|
| 357 | |
|---|
| 358 | # 'lxml>=2.2.2', |
|---|
| 359 | 'lxml', |
|---|
| 360 | |
|---|
| 361 | ## The following dependecies won't install automatically, so assume them |
|---|
| 362 | ## The numbers should be bumped up for matplotlib and wxPython as well. |
|---|
| 363 | # 'numpy>=1.4.1', 'scipy>=0.7.2', 'matplotlib>=0.99.1.1', |
|---|
| 364 | # 'wxPython>=2.8.11', 'pil', |
|---|
| 365 | ] |
|---|
| 366 | |
|---|
| 367 | if os.name=='nt': |
|---|
| 368 | required.extend(['html5lib', 'reportlab']) |
|---|
| 369 | else: |
|---|
| 370 | required.extend(['pil']) |
|---|
| 371 | |
|---|
| 372 | # Set up SasView |
|---|
| 373 | setup( |
|---|
| 374 | name="sasview", |
|---|
| 375 | version = VERSION, |
|---|
| 376 | description = "SasView application", |
|---|
| 377 | author = "SasView Team", |
|---|
| 378 | author_email = "developers@sasview.org", |
|---|
| 379 | url = "http://sasview.org", |
|---|
| 380 | license = "PSF", |
|---|
| 381 | keywords = "small-angle x-ray and neutron scattering analysis", |
|---|
| 382 | download_url = "https://github.com/SasView/sasview.git", |
|---|
| 383 | package_dir = package_dir, |
|---|
| 384 | packages = packages, |
|---|
| 385 | package_data = package_data, |
|---|
| 386 | ext_modules = ext_modules, |
|---|
| 387 | install_requires = required, |
|---|
| 388 | zip_safe = False, |
|---|
| 389 | entry_points = { |
|---|
| 390 | 'console_scripts':[ |
|---|
| 391 | "sasview = sas.sasview.sasview:run", |
|---|
| 392 | ] |
|---|
| 393 | }, |
|---|
| 394 | cmdclass = {'build_ext': build_ext_subclass, |
|---|
| 395 | 'docs': BuildSphinxCommand, |
|---|
| 396 | 'disable_openmp': DisableOpenMPCommand} |
|---|
| 397 | ) |
|---|
