| 1 | # -*- coding: utf-8 -*- |
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| 2 | #!/usr/bin/env python |
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| 3 | |
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| 4 | """ |
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| 5 | Setup for SasView |
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| 6 | TODO: Add checks to see that all the dependencies are on the system |
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| 7 | """ |
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| 8 | from __future__ import print_function |
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| 9 | |
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| 10 | import os |
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| 11 | import subprocess |
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| 12 | import shutil |
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| 13 | import sys |
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| 14 | from distutils.command.build_ext import build_ext |
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| 15 | from distutils.core import Command |
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| 16 | |
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| 17 | import numpy as np |
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| 18 | from setuptools import Extension, setup |
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| 19 | |
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| 20 | try: |
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| 21 | import tinycc.distutils |
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| 22 | except ImportError: |
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| 23 | pass |
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| 24 | |
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| 25 | # Manage version number ###################################### |
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| 26 | with open(os.path.join("src", "sas", "sasview", "__init__.py")) as fid: |
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| 27 | for line in fid: |
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| 28 | if line.startswith('__version__'): |
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| 29 | VERSION = line.split('"')[1] |
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| 30 | break |
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| 31 | else: |
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| 32 | raise ValueError("Could not find version in src/sas/sasview/__init__.py") |
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| 33 | ############################################################## |
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| 34 | |
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| 35 | package_dir = {} |
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| 36 | package_data = {} |
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| 37 | packages = [] |
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| 38 | ext_modules = [] |
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| 39 | |
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| 40 | # Remove all files that should be updated by this setup |
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| 41 | # We do this here because application updates these files from .sasview |
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| 42 | # except when there is no such file |
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| 43 | # Todo : make this list generic |
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| 44 | # plugin_model_list = ['polynominal5.py', 'sph_bessel_jn.py', |
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| 45 | # 'sum_Ap1_1_Ap2.py', 'sum_p1_p2.py', |
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| 46 | # 'testmodel_2.py', 'testmodel.py', |
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| 47 | # 'polynominal5.pyc', 'sph_bessel_jn.pyc', |
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| 48 | # 'sum_Ap1_1_Ap2.pyc', 'sum_p1_p2.pyc', |
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| 49 | # 'testmodel_2.pyc', 'testmodel.pyc', 'plugins.log'] |
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| 50 | |
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| 51 | CURRENT_SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) |
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| 52 | SASVIEW_BUILD = os.path.join(CURRENT_SCRIPT_DIR, "build") |
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| 53 | |
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| 54 | # TODO: build step should not be messing with existing installation!! |
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| 55 | sas_dir = os.path.join(os.path.expanduser("~"), '.sasview') |
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| 56 | if os.path.isdir(sas_dir): |
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| 57 | f_path = os.path.join(sas_dir, "sasview.log") |
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| 58 | if os.path.isfile(f_path): |
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| 59 | os.remove(f_path) |
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| 60 | f_path = os.path.join(sas_dir, "categories.json") |
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| 61 | if os.path.isfile(f_path): |
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| 62 | os.remove(f_path) |
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| 63 | f_path = os.path.join(sas_dir, 'config', "custom_config.py") |
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| 64 | if os.path.isfile(f_path): |
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| 65 | os.remove(f_path) |
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| 66 | #f_path = os.path.join(sas_dir, 'plugin_models') |
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| 67 | # if os.path.isdir(f_path): |
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| 68 | # for f in os.listdir(f_path): |
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| 69 | # if f in plugin_model_list: |
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| 70 | # file_path = os.path.join(f_path, f) |
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| 71 | # os.remove(file_path) |
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| 72 | |
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| 73 | |
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| 74 | # Optionally clean before build. |
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| 75 | dont_clean = 'update' in sys.argv |
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| 76 | if dont_clean: |
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| 77 | sys.argv.remove('update') |
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| 78 | elif os.path.exists(SASVIEW_BUILD): |
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| 79 | print("Removing existing build directory", SASVIEW_BUILD, "for a clean build") |
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| 80 | shutil.rmtree(SASVIEW_BUILD) |
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| 81 | |
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| 82 | # 'sys.maxsize' and 64bit: Not supported for python2.5 |
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| 83 | is_64bits = sys.maxsize > 2**32 |
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| 84 | |
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| 85 | enable_openmp = False |
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| 86 | if sys.platform == 'darwin': |
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| 87 | if not is_64bits: |
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| 88 | # Disable OpenMP |
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| 89 | enable_openmp = False |
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| 90 | else: |
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| 91 | # Newer versions of Darwin don't support openmp |
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| 92 | try: |
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| 93 | darwin_ver = int(os.uname()[2].split('.')[0]) |
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| 94 | if darwin_ver >= 12: |
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| 95 | enable_openmp = False |
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| 96 | except: |
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| 97 | print("PROBLEM determining Darwin version") |
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| 98 | |
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| 99 | # Options to enable OpenMP |
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| 100 | copt = {'msvc': ['/openmp'], |
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| 101 | 'mingw32': ['-fopenmp'], |
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| 102 | 'unix': ['-fopenmp']} |
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| 103 | lopt = {'msvc': ['/MANIFEST'], |
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| 104 | 'mingw32': ['-fopenmp'], |
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| 105 | 'unix': ['-lgomp']} |
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| 106 | |
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| 107 | # Platform-specific link options |
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| 108 | platform_lopt = {'msvc': ['/MANIFEST']} |
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| 109 | platform_copt = {} |
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| 110 | |
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| 111 | # Set copts to get compile working on OS X >= 10.9 using clang |
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| 112 | if sys.platform == 'darwin': |
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| 113 | try: |
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| 114 | darwin_ver = int(os.uname()[2].split('.')[0]) |
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| 115 | if darwin_ver >= 13 and darwin_ver < 14: |
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| 116 | platform_copt = { |
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| 117 | 'unix': ['-Wno-error=unused-command-line-argument-hard-error-in-future']} |
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| 118 | except: |
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| 119 | print("PROBLEM determining Darwin version") |
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| 120 | |
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| 121 | |
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| 122 | class DisableOpenMPCommand(Command): |
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| 123 | description = "The version of MinGW that comes with Anaconda does not come with OpenMP :( "\ |
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| 124 | "This commands means we can turn off compiling with OpenMP for this or any "\ |
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| 125 | "other reason." |
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| 126 | user_options = [] |
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| 127 | |
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| 128 | def initialize_options(self): |
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| 129 | self.cwd = None |
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| 130 | |
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| 131 | def finalize_options(self): |
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| 132 | self.cwd = os.getcwd() |
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| 133 | global enable_openmp |
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| 134 | enable_openmp = False |
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| 135 | |
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| 136 | def run(self): |
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| 137 | pass |
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| 138 | |
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| 139 | |
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| 140 | class build_ext_subclass(build_ext): |
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| 141 | def build_extensions(self): |
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| 142 | # Get 64-bitness |
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| 143 | c = self.compiler.compiler_type |
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| 144 | print("Compiling with %s (64bit=%s)" % (c, str(is_64bits))) |
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| 145 | #print("=== compiler attributes ===") |
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| 146 | #print("\n".join("%s: %s"%(k, v) for k, v in sorted(self.compiler.__dict__.items()))) |
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| 147 | #print("=== build_ext attributes ===") |
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| 148 | #print("\n".join("%s: %s"%(k, v) for k, v in self.__dict__.items())) |
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| 149 | #sys.exit(1) |
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| 150 | |
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| 151 | # OpenMP build options |
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| 152 | if enable_openmp: |
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| 153 | if c in copt: |
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| 154 | for e in self.extensions: |
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| 155 | e.extra_compile_args = copt[c] |
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| 156 | if c in lopt: |
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| 157 | for e in self.extensions: |
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| 158 | e.extra_link_args = lopt[c] |
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| 159 | |
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| 160 | # Platform-specific build options |
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| 161 | if c in platform_lopt: |
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| 162 | for e in self.extensions: |
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| 163 | e.extra_link_args = platform_lopt[c] |
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| 164 | |
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| 165 | if c in platform_copt: |
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| 166 | for e in self.extensions: |
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| 167 | e.extra_compile_args = platform_copt[c] |
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| 168 | |
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| 169 | build_ext.build_extensions(self) |
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| 170 | |
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| 171 | |
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| 172 | class BuildSphinxCommand(Command): |
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| 173 | description = "Build Sphinx documentation." |
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| 174 | user_options = [] |
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| 175 | |
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| 176 | def initialize_options(self): |
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| 177 | self.cwd = None |
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| 178 | |
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| 179 | def finalize_options(self): |
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| 180 | self.cwd = os.getcwd() |
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| 181 | |
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| 182 | def run(self): |
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| 183 | ''' First builds the sasmodels documentation if the directory |
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| 184 | is present. Then builds the sasview docs. |
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| 185 | ''' |
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| 186 | ### AJJ - Add code for building sasmodels docs here: |
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| 187 | # check for doc path |
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| 188 | SASMODELS_DOCPATH = os.path.abspath(os.path.join(os.getcwd(), '..', 'sasmodels', 'doc')) |
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| 189 | print("========= check for sasmodels at", SASMODELS_DOCPATH, "============") |
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| 190 | if os.path.exists(SASMODELS_DOCPATH): |
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| 191 | if os.path.isdir(SASMODELS_DOCPATH): |
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| 192 | # if available, build sasmodels docs |
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| 193 | print("============= Building sasmodels model documentation ===============") |
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| 194 | smdocbuild = subprocess.call(["make", "-C", SASMODELS_DOCPATH, "html"]) |
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| 195 | else: |
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| 196 | # if not available warning message |
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| 197 | print("== !!WARNING!! sasmodels directory not found. Cannot build model docs. ==") |
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| 198 | |
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| 199 | #Now build sasview (+sasmodels) docs |
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| 200 | sys.path.append("docs/sphinx-docs") |
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| 201 | import build_sphinx |
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| 202 | build_sphinx.rebuild() |
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| 203 | |
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| 204 | |
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| 205 | # sas module |
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| 206 | package_dir["sas"] = os.path.join("src", "sas") |
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| 207 | packages.append("sas") |
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| 208 | |
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| 209 | # sas module |
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| 210 | package_dir["sas.sasgui"] = os.path.join("src", "sas", "sasgui") |
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| 211 | packages.append("sas.sasgui") |
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| 212 | |
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| 213 | # sas module |
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| 214 | package_dir["sas.sascalc"] = os.path.join("src", "sas", "sascalc") |
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| 215 | packages.append("sas.sascalc") |
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| 216 | |
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| 217 | # sas.sascalc.invariant |
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| 218 | package_dir["sas.sascalc.invariant"] = os.path.join( |
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| 219 | "src", "sas", "sascalc", "invariant") |
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| 220 | packages.extend(["sas.sascalc.invariant"]) |
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| 221 | |
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| 222 | # sas.sasgui.guiframe |
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| 223 | guiframe_path = os.path.join("src", "sas", "sasgui", "guiframe") |
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| 224 | package_dir["sas.sasgui.guiframe"] = guiframe_path |
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| 225 | package_dir["sas.sasgui.guiframe.local_perspectives"] = os.path.join( |
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| 226 | os.path.join(guiframe_path, "local_perspectives")) |
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| 227 | package_data["sas.sasgui.guiframe"] = ['images/*', 'media/*'] |
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| 228 | packages.extend( |
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| 229 | ["sas.sasgui.guiframe", "sas.sasgui.guiframe.local_perspectives"]) |
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| 230 | # build local plugin |
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| 231 | for d in os.listdir(os.path.join(guiframe_path, "local_perspectives")): |
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| 232 | if d not in ['.svn', '__init__.py', '__init__.pyc']: |
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| 233 | package_name = "sas.sasgui.guiframe.local_perspectives." + d |
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| 234 | packages.append(package_name) |
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| 235 | package_dir[package_name] = os.path.join( |
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| 236 | guiframe_path, "local_perspectives", d) |
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| 237 | |
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| 238 | # sas.sascalc.dataloader |
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| 239 | package_dir["sas.sascalc.dataloader"] = os.path.join( |
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| 240 | "src", "sas", "sascalc", "dataloader") |
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| 241 | package_data["sas.sascalc.dataloader.readers"] = ['schema/*.xsd'] |
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| 242 | packages.extend(["sas.sascalc.dataloader", "sas.sascalc.dataloader.readers", |
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| 243 | "sas.sascalc.dataloader.readers.schema"]) |
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| 244 | |
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| 245 | |
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| 246 | # sas.sascalc.calculator |
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| 247 | gen_dir = os.path.join("src", "sas", "sascalc", "calculator", "c_extensions") |
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| 248 | package_dir["sas.sascalc.calculator.core"] = gen_dir |
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| 249 | package_dir["sas.sascalc.calculator"] = os.path.join( |
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| 250 | "src", "sas", "sascalc", "calculator") |
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| 251 | packages.extend(["sas.sascalc.calculator", "sas.sascalc.calculator.core"]) |
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| 252 | ext_modules.append(Extension("sas.sascalc.calculator.core.sld2i", |
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| 253 | sources=[ |
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| 254 | os.path.join(gen_dir, "sld2i_module.c"), |
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| 255 | os.path.join(gen_dir, "sld2i.c"), |
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| 256 | os.path.join(gen_dir, "libfunc.c"), |
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| 257 | os.path.join(gen_dir, "librefl.c"), |
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| 258 | ], |
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| 259 | include_dirs=[gen_dir], |
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| 260 | ) |
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| 261 | ) |
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| 262 | |
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| 263 | # sas.sascalc.pr |
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| 264 | srcdir = os.path.join("src", "sas", "sascalc", "pr", "c_extensions") |
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| 265 | package_dir["sas.sascalc.pr.core"] = srcdir |
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| 266 | package_dir["sas.sascalc.pr"] = os.path.join("src", "sas", "sascalc", "pr") |
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| 267 | packages.extend(["sas.sascalc.pr", "sas.sascalc.pr.core"]) |
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| 268 | ext_modules.append(Extension("sas.sascalc.pr.core.pr_inversion", |
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| 269 | sources=[os.path.join(srcdir, "Cinvertor.c"), |
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| 270 | os.path.join(srcdir, "invertor.c"), |
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| 271 | ], |
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| 272 | include_dirs=[], |
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| 273 | )) |
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| 274 | |
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| 275 | |
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| 276 | # sas.sascalc.file_converter |
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| 277 | mydir = os.path.join("src", "sas", "sascalc", "file_converter", "c_ext") |
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| 278 | package_dir["sas.sascalc.file_converter.core"] = mydir |
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| 279 | package_dir["sas.sascalc.file_converter"] = os.path.join( |
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| 280 | "src", "sas", "sascalc", "file_converter") |
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| 281 | packages.extend(["sas.sascalc.file_converter", |
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| 282 | "sas.sascalc.file_converter.core"]) |
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| 283 | ext_modules.append(Extension("sas.sascalc.file_converter.core.bsl_loader", |
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| 284 | sources=[os.path.join(mydir, "bsl_loader.c")], |
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| 285 | include_dirs=[np.get_include()], |
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| 286 | )) |
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| 287 | |
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| 288 | # sas.sascalc.corfunc |
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| 289 | package_dir["sas.sascalc.corfunc"] = os.path.join( |
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| 290 | "src", "sas", "sascalc", "corfunc") |
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| 291 | |
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| 292 | packages.extend(["sas.sascalc.corfunc"]) |
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| 293 | |
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| 294 | # sas.sascalc.fit |
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| 295 | package_dir["sas.sascalc.fit"] = os.path.join("src", "sas", "sascalc", "fit") |
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| 296 | packages.append("sas.sascalc.fit") |
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| 297 | |
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| 298 | # Perspectives |
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| 299 | package_dir["sas.sasgui.perspectives"] = os.path.join( |
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| 300 | "src", "sas", "sasgui", "perspectives") |
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| 301 | package_dir["sas.sasgui.perspectives.pr"] = os.path.join( |
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| 302 | "src", "sas", "sasgui", "perspectives", "pr") |
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| 303 | packages.extend(["sas.sasgui.perspectives", "sas.sasgui.perspectives.pr"]) |
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| 304 | package_data["sas.sasgui.perspectives.pr"] = ['media/*'] |
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| 305 | |
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| 306 | package_dir["sas.sasgui.perspectives.invariant"] = os.path.join( |
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| 307 | "src", "sas", "sasgui", "perspectives", "invariant") |
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| 308 | packages.extend(["sas.sasgui.perspectives.invariant"]) |
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| 309 | package_data['sas.sasgui.perspectives.invariant'] = [ |
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| 310 | os.path.join("media", '*')] |
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| 311 | |
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| 312 | package_dir["sas.sasgui.perspectives.fitting"] = os.path.join( |
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| 313 | "src", "sas", "sasgui", "perspectives", "fitting") |
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| 314 | package_dir["sas.sasgui.perspectives.fitting.plugin_models"] = os.path.join( |
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| 315 | "src", "sas", "sasgui", "perspectives", "fitting", "plugin_models") |
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| 316 | packages.extend(["sas.sasgui.perspectives.fitting", |
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| 317 | "sas.sasgui.perspectives.fitting.plugin_models"]) |
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| 318 | package_data['sas.sasgui.perspectives.fitting'] = [ |
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| 319 | 'media/*', 'plugin_models/*'] |
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| 320 | |
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| 321 | packages.extend(["sas.sasgui.perspectives", |
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| 322 | "sas.sasgui.perspectives.calculator"]) |
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| 323 | package_data['sas.sasgui.perspectives.calculator'] = ['images/*', 'media/*'] |
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| 324 | |
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| 325 | package_dir["sas.sasgui.perspectives.corfunc"] = os.path.join( |
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| 326 | "src", "sas", "sasgui", "perspectives", "corfunc") |
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| 327 | packages.extend(["sas.sasgui.perspectives.corfunc"]) |
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| 328 | package_data['sas.sasgui.perspectives.corfunc'] = ['media/*'] |
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| 329 | |
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| 330 | package_dir["sas.sasgui.perspectives.file_converter"] = os.path.join( |
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| 331 | "src", "sas", "sasgui", "perspectives", "file_converter") |
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| 332 | packages.extend(["sas.sasgui.perspectives.file_converter"]) |
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| 333 | package_data['sas.sasgui.perspectives.file_converter'] = ['media/*'] |
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| 334 | |
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| 335 | # Data util |
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| 336 | package_dir["sas.sascalc.data_util"] = os.path.join( |
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| 337 | "src", "sas", "sascalc", "data_util") |
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| 338 | packages.append("sas.sascalc.data_util") |
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| 339 | |
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| 340 | # Plottools |
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| 341 | package_dir["sas.sasgui.plottools"] = os.path.join( |
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| 342 | "src", "sas", "sasgui", "plottools") |
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| 343 | packages.append("sas.sasgui.plottools") |
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| 344 | |
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| 345 | # # Last of the sas.models |
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| 346 | # package_dir["sas.models"] = os.path.join("src", "sas", "models") |
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| 347 | # packages.append("sas.models") |
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| 348 | |
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| 349 | EXTENSIONS = [".c", ".cpp"] |
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| 350 | |
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| 351 | |
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| 352 | def append_file(file_list, dir_path): |
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| 353 | """ |
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| 354 | Add sources file to sources |
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| 355 | """ |
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| 356 | for f in os.listdir(dir_path): |
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| 357 | if os.path.isfile(os.path.join(dir_path, f)): |
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| 358 | _, ext = os.path.splitext(f) |
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| 359 | if ext.lower() in EXTENSIONS: |
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| 360 | file_list.append(os.path.join(dir_path, f)) |
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| 361 | elif os.path.isdir(os.path.join(dir_path, f)) and \ |
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| 362 | not f.startswith("."): |
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| 363 | sub_dir = os.path.join(dir_path, f) |
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| 364 | for new_f in os.listdir(sub_dir): |
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| 365 | if os.path.isfile(os.path.join(sub_dir, new_f)): |
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| 366 | _, ext = os.path.splitext(new_f) |
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| 367 | if ext.lower() in EXTENSIONS: |
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| 368 | file_list.append(os.path.join(sub_dir, new_f)) |
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| 369 | |
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| 370 | |
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| 371 | # Comment out the following to avoid rebuilding all the models |
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| 372 | file_sources = [] |
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| 373 | append_file(file_sources, gen_dir) |
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| 374 | |
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| 375 | # Wojtek's hacky way to add doc files while bundling egg |
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| 376 | # def add_doc_files(directory): |
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| 377 | # paths = [] |
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| 378 | # for (path, directories, filenames) in os.walk(directory): |
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| 379 | # for filename in filenames: |
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| 380 | # paths.append(os.path.join(path, filename)) |
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| 381 | # return paths |
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| 382 | |
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| 383 | #doc_files = add_doc_files('doc') |
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| 384 | |
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| 385 | # SasView |
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| 386 | package_data['sas'] = ['logging.ini'] |
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| 387 | package_data['sas.sasview'] = ['images/*', |
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| 388 | 'media/*', |
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| 389 | 'test/*.txt', |
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| 390 | 'test/1d_data/*', |
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| 391 | 'test/2d_data/*', |
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| 392 | 'test/convertible_files/*', |
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| 393 | 'test/coordinate_data/*', |
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| 394 | 'test/image_data/*', |
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| 395 | 'test/media/*', |
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| 396 | 'test/other_files/*', |
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| 397 | 'test/save_states/*', |
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| 398 | 'test/sesans_data/*', |
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| 399 | 'test/upcoming_formats/*', |
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| 400 | ] |
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| 401 | packages.append("sas.sasview") |
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| 402 | |
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| 403 | required = [ |
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| 404 | 'bumps>=0.7.5.9', 'periodictable>=1.5.0', 'pyparsing<2.0.0', |
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| 405 | |
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| 406 | # 'lxml>=2.2.2', |
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| 407 | 'lxml', 'h5py', |
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| 408 | |
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| 409 | # The following dependecies won't install automatically, so assume them |
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| 410 | # The numbers should be bumped up for matplotlib and wxPython as well. |
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| 411 | # 'numpy>=1.4.1', 'scipy>=0.7.2', 'matplotlib>=0.99.1.1', |
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| 412 | # 'wxPython>=2.8.11', 'pil', |
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| 413 | ] |
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| 414 | |
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| 415 | if os.name == 'nt': |
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| 416 | required.extend(['html5lib', 'reportlab']) |
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| 417 | else: |
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| 418 | # 'pil' is now called 'pillow' |
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| 419 | required.extend(['pillow']) |
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| 420 | |
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| 421 | # Set up SasView |
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| 422 | setup( |
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| 423 | name="sasview", |
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| 424 | version=VERSION, |
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| 425 | description="SasView application", |
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| 426 | author="SasView Team", |
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| 427 | author_email="developers@sasview.org", |
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| 428 | url="http://sasview.org", |
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| 429 | license="PSF", |
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| 430 | keywords="small-angle x-ray and neutron scattering analysis", |
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| 431 | download_url="https://github.com/SasView/sasview.git", |
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| 432 | package_dir=package_dir, |
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| 433 | packages=packages, |
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| 434 | package_data=package_data, |
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| 435 | ext_modules=ext_modules, |
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| 436 | install_requires=required, |
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| 437 | zip_safe=False, |
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| 438 | entry_points={ |
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| 439 | 'console_scripts': [ |
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| 440 | "sasview = sas.sasview.sasview:run_gui", |
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| 441 | ] |
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| 442 | }, |
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| 443 | cmdclass={'build_ext': build_ext_subclass, |
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| 444 | 'docs': BuildSphinxCommand, |
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| 445 | 'disable_openmp': DisableOpenMPCommand} |
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| 446 | ) |
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