source: sasview/setup.py @ e4a3302

Last change on this file since e4a3302 was 377ade1, checked in by Piotr Rozyczko <rozyczko@…>, 7 years ago

Fixing unit tests + removal of unnecessary files

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File size: 17.3 KB
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[f36e01f]1# -*- coding: utf-8 -*-
2#!/usr/bin/env python
3
[d6bc28cf]4"""
[c329f4d]5    Setup for SasView
[f36e01f]6    TODO: Add checks to see that all the dependencies are on the system
[d6bc28cf]7"""
[f36e01f]8
[d6bc28cf]9import os
[6c7e4cc1]10import subprocess
[c8843be]11import shutil
[f36e01f]12import sys
[2cef9d3]13from distutils.command.build_ext import build_ext
[968aa6e]14from distutils.core import Command
[f36e01f]15
[9a5097c]16import numpy as np
[f36e01f]17from setuptools import Extension, setup
[d6bc28cf]18
[5548954]19# Manage version number ######################################
[3a39c2e]20import sasview
[f36e01f]21
[3a39c2e]22VERSION = sasview.__version__
[5548954]23##############################################################
24
[d6bc28cf]25package_dir = {}
26package_data = {}
27packages = []
28ext_modules = []
29
[8ab3302]30# Remove all files that should be updated by this setup
[3a39c2e]31# We do this here because application updates these files from .sasview
[8ab3302]32# except when there is no such file
33# Todo : make this list generic
[f36e01f]34# plugin_model_list = ['polynominal5.py', 'sph_bessel_jn.py',
[a62945e]35#                      'sum_Ap1_1_Ap2.py', 'sum_p1_p2.py',
36#                      'testmodel_2.py', 'testmodel.py',
37#                      'polynominal5.pyc', 'sph_bessel_jn.pyc',
38#                      'sum_Ap1_1_Ap2.pyc', 'sum_p1_p2.pyc',
39#                      'testmodel_2.pyc', 'testmodel.pyc', 'plugins.log']
[c8843be]40
41CURRENT_SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__))
42SASVIEW_BUILD = os.path.join(CURRENT_SCRIPT_DIR, "build")
43
[f36e01f]44sas_dir = os.path.join(os.path.expanduser("~"), '.sasview')
[3a39c2e]45if os.path.isdir(sas_dir):
46    f_path = os.path.join(sas_dir, "sasview.log")
[e615a0d]47    if os.path.isfile(f_path):
48        os.remove(f_path)
[50008e3]49    f_path = os.path.join(sas_dir, "categories.json")
[ea5fa58]50    if os.path.isfile(f_path):
51        os.remove(f_path)
[3a39c2e]52    f_path = os.path.join(sas_dir, 'config', "custom_config.py")
[e615a0d]53    if os.path.isfile(f_path):
54        os.remove(f_path)
[5881b17]55    #f_path = os.path.join(sas_dir, 'plugin_models')
[f36e01f]56    # if os.path.isdir(f_path):
[a62945e]57    #     for f in os.listdir(f_path):
58    #         if f in plugin_model_list:
59    #             file_path =  os.path.join(f_path, f)
60    #             os.remove(file_path)
[c8843be]61    if os.path.exists(SASVIEW_BUILD):
[f36e01f]62        print("Removing existing build directory",
63              SASVIEW_BUILD, "for a clean build")
[c8843be]64        shutil.rmtree(SASVIEW_BUILD)
[18e7309]65
[e615a0d]66# 'sys.maxsize' and 64bit: Not supported for python2.5
67is_64bits = False
68if sys.version_info >= (2, 6):
69    is_64bits = sys.maxsize > 2**32
[18e7309]70
[7a04dbb]71enable_openmp = False
[e79a467]72
[f36e01f]73if sys.platform == 'darwin':
[f468791]74    if not is_64bits:
75        # Disable OpenMP
76        enable_openmp = False
77    else:
78        # Newer versions of Darwin don't support openmp
79        try:
80            darwin_ver = int(os.uname()[2].split('.')[0])
81            if darwin_ver >= 12:
82                enable_openmp = False
83        except:
[f3bf622]84            print("PROBLEM determining Darwin version")
[b30ed8f]85
86# Options to enable OpenMP
[f36e01f]87copt = {'msvc': ['/openmp'],
88        'mingw32': ['-fopenmp'],
89        'unix': ['-fopenmp']}
90lopt = {'msvc': ['/MANIFEST'],
91        'mingw32': ['-fopenmp'],
92        'unix': ['-lgomp']}
[13f00a0]93
[ebdb833]94# Platform-specific link options
[f36e01f]95platform_lopt = {'msvc': ['/MANIFEST']}
[307fa4f]96platform_copt = {}
[b9c8fc5]97
98# Set copts to get compile working on OS X >= 10.9 using clang
[f36e01f]99if sys.platform == 'darwin':
[b9c8fc5]100    try:
101        darwin_ver = int(os.uname()[2].split('.')[0])
[4adf48e]102        if darwin_ver >= 13 and darwin_ver < 14:
[f36e01f]103            platform_copt = {
104                'unix': ['-Wno-error=unused-command-line-argument-hard-error-in-future']}
[b9c8fc5]105    except:
[f3bf622]106        print("PROBLEM determining Darwin version")
[b9c8fc5]107
[f36e01f]108
[5972029]109class DisableOpenMPCommand(Command):
110    description = "The version of MinGW that comes with Anaconda does not come with OpenMP :( "\
111                  "This commands means we can turn off compiling with OpenMP for this or any "\
112                  "other reason."
113    user_options = []
114
115    def initialize_options(self):
116        self.cwd = None
117
118    def finalize_options(self):
119        self.cwd = os.getcwd()
120        global enable_openmp
121        enable_openmp = False
[1829835]122
[5972029]123    def run(self):
124        pass
[ebdb833]125
[f36e01f]126
127class build_ext_subclass(build_ext):
[13f00a0]128    def build_extensions(self):
129        # Get 64-bitness
130        c = self.compiler.compiler_type
[f3bf622]131        print("Compiling with %s (64bit=%s)" % (c, str(is_64bits)))
[18e7309]132
[ebdb833]133        # OpenMP build options
[b30ed8f]134        if enable_openmp:
[f3bf622]135            if c in copt:
[5980b1a]136                for e in self.extensions:
[f36e01f]137                    e.extra_compile_args = copt[c]
[f3bf622]138            if c in lopt:
[13f00a0]139                for e in self.extensions:
[f36e01f]140                    e.extra_link_args = lopt[c]
[18e7309]141
[ebdb833]142        # Platform-specific build options
[f3bf622]143        if c in platform_lopt:
[ebdb833]144            for e in self.extensions:
[f36e01f]145                e.extra_link_args = platform_lopt[c]
[ebdb833]146
[f3bf622]147        if c in platform_copt:
[1829835]148            for e in self.extensions:
[f36e01f]149                e.extra_compile_args = platform_copt[c]
[1829835]150
[13f00a0]151        build_ext.build_extensions(self)
[d6bc28cf]152
[f36e01f]153
[968aa6e]154class BuildSphinxCommand(Command):
155    description = "Build Sphinx documentation."
156    user_options = []
157
158    def initialize_options(self):
159        self.cwd = None
160
161    def finalize_options(self):
162        self.cwd = os.getcwd()
163
[d8c4019]164    def run(self):
[115eb7e]165        ''' First builds the sasmodels documentation if the directory
166        is present. Then builds the sasview docs.
167        '''
168        ### AJJ - Add code for building sasmodels docs here:
169        # check for doc path
[14bb7a4]170        SASMODELS_DOCPATH = os.path.abspath(os.path.join(os.getcwd(), '..', 'sasmodels', 'doc'))
171        print("========= check for sasmodels at", SASMODELS_DOCPATH, "============")
[6c7e4cc1]172        if os.path.exists(SASMODELS_DOCPATH):
173            if os.path.isdir(SASMODELS_DOCPATH):
[115eb7e]174                # if available, build sasmodels docs
[21bba86]175                print("============= Building sasmodels model documentation ===============")
[14bb7a4]176                smdocbuild = subprocess.call(["make", "-C", SASMODELS_DOCPATH, "html"])
[6c7e4cc1]177        else:
178            # if not available warning message
[21bba86]179            print("== !!WARNING!! sasmodels directory not found. Cannot build model docs. ==")
[115eb7e]180
181        #Now build sasview (+sasmodels) docs
[d8c4019]182        sys.path.append("docs/sphinx-docs")
183        import build_sphinx
[c2ee2b1]184        build_sphinx.rebuild()
[968aa6e]185
[f36e01f]186
[3a39c2e]187# sas module
188package_dir["sas"] = os.path.join("src", "sas")
189packages.append("sas")
[29e96f3]190
[e0bbb7c]191# sas module
192package_dir["sas.sasgui"] = os.path.join("src", "sas", "sasgui")
193packages.append("sas.sasgui")
194
[985ad94]195# qt module
196package_dir["sas.qtgui"] = os.path.join("src", "sas", "qtgui")
197packages.append("sas.qtgui")
198
[e0bbb7c]199# sas module
200package_dir["sas.sascalc"] = os.path.join("src", "sas", "sascalc")
201packages.append("sas.sascalc")
202
203# sas.sascalc.invariant
[f36e01f]204package_dir["sas.sascalc.invariant"] = os.path.join(
205    "src", "sas", "sascalc", "invariant")
[e0bbb7c]206packages.extend(["sas.sascalc.invariant"])
[d6bc28cf]207
[d85c194]208# sas.sasgui.guiframe
209guiframe_path = os.path.join("src", "sas", "sasgui", "guiframe")
210package_dir["sas.sasgui.guiframe"] = guiframe_path
[f36e01f]211package_dir["sas.sasgui.guiframe.local_perspectives"] = os.path.join(
212    os.path.join(guiframe_path, "local_perspectives"))
[d85c194]213package_data["sas.sasgui.guiframe"] = ['images/*', 'media/*']
[f36e01f]214packages.extend(
215    ["sas.sasgui.guiframe", "sas.sasgui.guiframe.local_perspectives"])
[d6bc28cf]216# build local plugin
[5980b1a]217for d in os.listdir(os.path.join(guiframe_path, "local_perspectives")):
[f36e01f]218    if d not in ['.svn', '__init__.py', '__init__.pyc']:
[d85c194]219        package_name = "sas.sasgui.guiframe.local_perspectives." + d
[3d24489]220        packages.append(package_name)
[f36e01f]221        package_dir[package_name] = os.path.join(
222            guiframe_path, "local_perspectives", d)
[d6bc28cf]223
[e0bbb7c]224# sas.sascalc.dataloader
[f36e01f]225package_dir["sas.sascalc.dataloader"] = os.path.join(
226    "src", "sas", "sascalc", "dataloader")
227package_data["sas.sascalc.dataloader.readers"] = [
228    'defaults.json', 'schema/*.xsd']
229packages.extend(["sas.sascalc.dataloader", "sas.sascalc.dataloader.readers",
230                 "sas.sascalc.dataloader.readers.schema"])
[d6bc28cf]231
232
[e0bbb7c]233# sas.sascalc.calculator
[9e531f2]234gen_dir = os.path.join("src", "sas", "sascalc", "calculator", "c_extensions")
235package_dir["sas.sascalc.calculator.core"] = gen_dir
[f36e01f]236package_dir["sas.sascalc.calculator"] = os.path.join(
237    "src", "sas", "sascalc", "calculator")
238packages.extend(["sas.sascalc.calculator", "sas.sascalc.calculator.core"])
239ext_modules.append(Extension("sas.sascalc.calculator.core.sld2i",
240                             sources=[
241                                 os.path.join(gen_dir, "sld2i_module.cpp"),
242                                 os.path.join(gen_dir, "sld2i.cpp"),
243                                 os.path.join(gen_dir, "libfunc.c"),
244                                 os.path.join(gen_dir, "librefl.c"),
245                             ],
246                             include_dirs=[gen_dir],
247                             )
248                   )
[9e531f2]249
[b699768]250# sas.sascalc.pr
[f36e01f]251srcdir = os.path.join("src", "sas", "sascalc", "pr", "c_extensions")
[b699768]252package_dir["sas.sascalc.pr.core"] = srcdir
[f36e01f]253package_dir["sas.sascalc.pr"] = os.path.join("src", "sas", "sascalc", "pr")
254packages.extend(["sas.sascalc.pr", "sas.sascalc.pr.core"])
255ext_modules.append(Extension("sas.sascalc.pr.core.pr_inversion",
256                             sources=[os.path.join(srcdir, "Cinvertor.c"),
257                                      os.path.join(srcdir, "invertor.c"),
258                                      ],
259                             include_dirs=[],
260                             ))
[18e7309]261
262
263# sas.sascalc.file_converter
264mydir = os.path.join("src", "sas", "sascalc", "file_converter", "c_ext")
265package_dir["sas.sascalc.file_converter.core"] = mydir
[f36e01f]266package_dir["sas.sascalc.file_converter"] = os.path.join(
267    "src", "sas", "sascalc", "file_converter")
268packages.extend(["sas.sascalc.file_converter",
269                 "sas.sascalc.file_converter.core"])
[985ad94]270
[f36e01f]271ext_modules.append(Extension("sas.sascalc.file_converter.core.bsl_loader",
272                             sources=[os.path.join(mydir, "bsl_loader.c")],
273                             include_dirs=[np.get_include()],
274                             ))
275# sas.sascalc.corfunc
276package_dir["sas.sascalc.corfunc"] = os.path.join(
277    "src", "sas", "sascalc", "corfunc")
[1e13b53]278packages.extend(["sas.sascalc.corfunc"])
279
[b699768]280# sas.sascalc.fit
281package_dir["sas.sascalc.fit"] = os.path.join("src", "sas", "sascalc", "fit")
282packages.append("sas.sascalc.fit")
[3d24489]283
284# Perspectives
[f36e01f]285package_dir["sas.sasgui.perspectives"] = os.path.join(
286    "src", "sas", "sasgui", "perspectives")
287package_dir["sas.sasgui.perspectives.pr"] = os.path.join(
288    "src", "sas", "sasgui", "perspectives", "pr")
289packages.extend(["sas.sasgui.perspectives", "sas.sasgui.perspectives.pr"])
[1e13b53]290package_data["sas.sasgui.perspectives.pr"] = ['media/*']
[d85c194]291
[f36e01f]292package_dir["sas.sasgui.perspectives.invariant"] = os.path.join(
293    "src", "sas", "sasgui", "perspectives", "invariant")
[d85c194]294packages.extend(["sas.sasgui.perspectives.invariant"])
[f36e01f]295package_data['sas.sasgui.perspectives.invariant'] = [
296    os.path.join("media", '*')]
297
298package_dir["sas.sasgui.perspectives.fitting"] = os.path.join(
299    "src", "sas", "sasgui", "perspectives", "fitting")
300package_dir["sas.sasgui.perspectives.fitting.plugin_models"] = os.path.join(
301    "src", "sas", "sasgui", "perspectives", "fitting", "plugin_models")
302packages.extend(["sas.sasgui.perspectives.fitting",
303                 "sas.sasgui.perspectives.fitting.plugin_models"])
304package_data['sas.sasgui.perspectives.fitting'] = [
305    'media/*', 'plugin_models/*']
306
307packages.extend(["sas.sasgui.perspectives",
308                 "sas.sasgui.perspectives.calculator"])
[d85c194]309package_data['sas.sasgui.perspectives.calculator'] = ['images/*', 'media/*']
[18e7309]310
[f36e01f]311package_dir["sas.sasgui.perspectives.corfunc"] = os.path.join(
312    "src", "sas", "sasgui", "perspectives", "corfunc")
[1e13b53]313packages.extend(["sas.sasgui.perspectives.corfunc"])
314package_data['sas.sasgui.perspectives.corfunc'] = ['media/*']
315
[f36e01f]316package_dir["sas.sasgui.perspectives.file_converter"] = os.path.join(
317    "src", "sas", "sasgui", "perspectives", "file_converter")
[1e13b53]318packages.extend(["sas.sasgui.perspectives.file_converter"])
319package_data['sas.sasgui.perspectives.file_converter'] = ['media/*']
320
[d6bc28cf]321# Data util
[f36e01f]322package_dir["sas.sascalc.data_util"] = os.path.join(
323    "src", "sas", "sascalc", "data_util")
[b699768]324packages.append("sas.sascalc.data_util")
[d6bc28cf]325
326# Plottools
[f36e01f]327package_dir["sas.sasgui.plottools"] = os.path.join(
328    "src", "sas", "sasgui", "plottools")
[d7bb526]329packages.append("sas.sasgui.plottools")
[d6bc28cf]330
[985ad94]331# QTGUI
332## UI
333package_dir["sas.qtgui.UI"] = os.path.join(
334    "src", "sas", "qtgui", "UI")
335packages.append("sas.qtgui.UI")
336
[377ade1]337## UnitTesting
338package_dir["sas.qtgui.UnitTesting"] = os.path.join(
339    "src", "sas", "qtgui", "UnitTesting")
340packages.append("sas.qtgui.UnitTesting")
341
[985ad94]342## Utilities
343package_dir["sas.qtgui.Utilities"] = os.path.join(
344    "src", "sas", "qtgui", "Utilities")
345packages.append("sas.qtgui.Utilities")
346
347package_dir["sas.qtgui.Calculators"] = os.path.join(
348    "src", "sas", "qtgui", "Calculators")
349package_dir["sas.qtgui.Calculators.UI"] = os.path.join(
350    "src", "sas", "qtgui", "Calculators", "UI")
351packages.extend(["sas.qtgui.Calculators", "sas.qtgui.Calculators.UI"])
352
353package_dir["sas.qtgui.MainWindow"] = os.path.join(
354    "src", "sas", "qtgui", "MainWindow")
355package_dir["sas.qtgui.MainWindow.UI"] = os.path.join(
356    "src", "sas", "qtgui", "MainWindow", "UI")
357packages.extend(["sas.qtgui.MainWindow", "sas.qtgui.MainWindow.UI"])
358
359## Perspectives
360package_dir["sas.qtgui.Perspectives"] = os.path.join(
361    "src", "sas", "qtgui", "Perspectives")
362packages.append("sas.qtgui.Perspectives")
363
364package_dir["sas.qtgui.Perspectives.Invariant"] = os.path.join(
365    "src", "sas", "qtgui", "Perspectives", "Invariant")
366package_dir["sas.qtgui.Perspectives.Invariant.UI"] = os.path.join(
367    "src", "sas", "qtgui", "Perspectives", "Invariant", "UI")
368packages.extend(["sas.qtgui.Perspectives.Invariant", "sas.qtgui.Perspectives.Invariant.UI"])
369
370package_dir["sas.qtgui.Perspectives.Fitting"] = os.path.join(
371    "src", "sas", "qtgui", "Perspectives", "Fitting")
372package_dir["sas.qtgui.Perspectives.Fitting.UI"] = os.path.join(
373    "src", "sas", "qtgui", "Perspectives", "Fitting", "UI")
374packages.extend(["sas.qtgui.Perspectives.Fitting", "sas.qtgui.Perspectives.Fitting.UI"])
375
376## Plotting
377package_dir["sas.qtgui.Plotting"] = os.path.join(
378    "src", "sas", "qtgui", "Plotting")
379package_dir["sas.qtgui.Plotting.UI"] = os.path.join(
380    "src", "sas", "qtgui", "Plotting", "UI")
381package_dir["sas.qtgui.Plotting.Slicers"] = os.path.join(
382    "src", "sas", "qtgui", "Plotting", "Slicers")
383packages.extend(["sas.qtgui.Plotting", "sas.qtgui.Plotting.UI", "sas.qtgui.Plotting.Slicers"])
384
385
386
[9274711]387# # Last of the sas.models
388# package_dir["sas.models"] = os.path.join("src", "sas", "models")
389# packages.append("sas.models")
[2d1b700]390
[d6bc28cf]391EXTENSIONS = [".c", ".cpp"]
392
[f36e01f]393
[d6bc28cf]394def append_file(file_list, dir_path):
395    """
396    Add sources file to sources
397    """
398    for f in os.listdir(dir_path):
399        if os.path.isfile(os.path.join(dir_path, f)):
400            _, ext = os.path.splitext(f)
[4c29e4d]401            if ext.lower() in EXTENSIONS:
[9e531f2]402                file_list.append(os.path.join(dir_path, f))
[d6bc28cf]403        elif os.path.isdir(os.path.join(dir_path, f)) and \
404                not f.startswith("."):
405            sub_dir = os.path.join(dir_path, f)
406            for new_f in os.listdir(sub_dir):
407                if os.path.isfile(os.path.join(sub_dir, new_f)):
408                    _, ext = os.path.splitext(new_f)
[4c29e4d]409                    if ext.lower() in EXTENSIONS:
[9e531f2]410                        file_list.append(os.path.join(sub_dir, new_f))
[820df88]411
[f36e01f]412
[820df88]413# Comment out the following to avoid rebuilding all the models
[9e531f2]414file_sources = []
415append_file(file_sources, gen_dir)
[820df88]416
[f36e01f]417# Wojtek's hacky way to add doc files while bundling egg
418# def add_doc_files(directory):
[5881b17]419#    paths = []
420#    for (path, directories, filenames) in os.walk(directory):
421#        for filename in filenames:
422#            paths.append(os.path.join(path, filename))
423#    return paths
424
425#doc_files = add_doc_files('doc')
426
[c329f4d]427# SasView
[3a39c2e]428package_dir["sas.sasview"] = "sasview"
[5881b17]429package_data['sas.sasview'] = ['images/*',
[bbb8a56]430                               'media/*',
[2a8b4756]431                               'logging.ini',
[d4c88e24]432                               'test/*.txt',
[bbb8a56]433                               'test/1d_data/*',
434                               'test/2d_data/*',
[27109e5]435                               'test/convertible_files/*',
436                               'test/coordinate_data/*',
437                               'test/image_data/*',
438                               'test/media/*',
439                               'test/other_files/*',
[bbb8a56]440                               'test/save_states/*',
[27109e5]441                               'test/sesans_data/*'
442                               ]
[3a39c2e]443packages.append("sas.sasview")
[d6bc28cf]444
[9f32c57]445required = [
[243fbc0]446    'bumps>=0.7.5.9', 'periodictable>=1.3.1', 'pyparsing<2.0.0',
[9f32c57]447
448    # 'lxml>=2.2.2',
[db74ee8]449    'lxml', 'h5py',
[9f32c57]450
[f36e01f]451    # The following dependecies won't install automatically, so assume them
452    # The numbers should be bumped up for matplotlib and wxPython as well.
[9f32c57]453    # 'numpy>=1.4.1', 'scipy>=0.7.2', 'matplotlib>=0.99.1.1',
454    # 'wxPython>=2.8.11', 'pil',
[f36e01f]455]
[213b445]456
[f36e01f]457if os.name == 'nt':
[7a211030]458    required.extend(['html5lib', 'reportlab'])
[7f59928e]459else:
[775d06f]460    # 'pil' is now called 'pillow'
[5f6336f]461    required.extend(['pillow'])
[5881b17]462
[18e7309]463# Set up SasView
[d6bc28cf]464setup(
[c329f4d]465    name="sasview",
[f36e01f]466    version=VERSION,
467    description="SasView application",
468    author="SasView Team",
469    author_email="developers@sasview.org",
470    url="http://sasview.org",
471    license="PSF",
472    keywords="small-angle x-ray and neutron scattering analysis",
473    download_url="https://github.com/SasView/sasview.git",
474    package_dir=package_dir,
475    packages=packages,
476    package_data=package_data,
477    ext_modules=ext_modules,
478    install_requires=required,
479    zip_safe=False,
480    entry_points={
481        'console_scripts': [
[985ad94]482            "sasview = sas.run",
[f36e01f]483        ]
484    },
485    cmdclass={'build_ext': build_ext_subclass,
486              'docs': BuildSphinxCommand,
487              'disable_openmp': DisableOpenMPCommand}
488)
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