[d6bc28cf] | 1 | """ |
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[c329f4d] | 2 | Setup for SasView |
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[d6bc28cf] | 3 | #TODO: Add checks to see that all the dependencies are on the system |
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| 4 | """ |
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[8ab3302] | 5 | import sys |
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[d6bc28cf] | 6 | import os |
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[5980b1a] | 7 | from setuptools import setup, Extension |
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[2cef9d3] | 8 | from distutils.command.build_ext import build_ext |
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[968aa6e] | 9 | from distutils.core import Command |
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| 10 | |
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| 11 | sys.path.append("docs/sphinx-docs") |
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| 12 | import build_sphinx |
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[2cef9d3] | 13 | |
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[e13ef7f] | 14 | try: |
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| 15 | from numpy.distutils.misc_util import get_numpy_include_dirs |
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| 16 | NUMPY_INC = get_numpy_include_dirs()[0] |
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| 17 | except: |
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[cb5fb4a] | 18 | try: |
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[e13ef7f] | 19 | import numpy |
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[8ab3302] | 20 | NUMPY_INC = os.path.join(os.path.split(numpy.__file__)[0], |
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| 21 | "core","include") |
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[cb5fb4a] | 22 | except: |
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[c329f4d] | 23 | msg = "\nNumpy is needed to build SasView. " |
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[8ab3302] | 24 | print msg, "Try easy_install numpy.\n %s" % str(sys.exc_value) |
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[e13ef7f] | 25 | sys.exit(0) |
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[d6bc28cf] | 26 | |
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[5548954] | 27 | # Manage version number ###################################### |
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[a134fc6] | 28 | import sansview |
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| 29 | VERSION = sansview.__version__ |
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[5548954] | 30 | ############################################################## |
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| 31 | |
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[d6bc28cf] | 32 | package_dir = {} |
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| 33 | package_data = {} |
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| 34 | packages = [] |
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| 35 | ext_modules = [] |
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| 36 | |
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[8ab3302] | 37 | # Remove all files that should be updated by this setup |
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| 38 | # We do this here because application updates these files from .sansview |
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| 39 | # except when there is no such file |
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| 40 | # Todo : make this list generic |
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| 41 | plugin_model_list = ['polynominal5.py', 'sph_bessel_jn.py', |
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| 42 | 'sum_Ap1_1_Ap2.py', 'sum_p1_p2.py', |
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[b30ed8f] | 43 | 'testmodel_2.py', 'testmodel.py', |
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| 44 | 'polynominal5.pyc', 'sph_bessel_jn.pyc', |
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| 45 | 'sum_Ap1_1_Ap2.pyc', 'sum_p1_p2.pyc', |
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[eb32080e] | 46 | 'testmodel_2.pyc', 'testmodel.pyc', 'plugins.log'] |
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[c329f4d] | 47 | sans_dir = os.path.join(os.path.expanduser("~"),'.sasview') |
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[8ab3302] | 48 | if os.path.isdir(sans_dir): |
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[c329f4d] | 49 | f_path = os.path.join(sans_dir, "sasview.log") |
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[e615a0d] | 50 | if os.path.isfile(f_path): |
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| 51 | os.remove(f_path) |
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[27b7acc] | 52 | f_path = os.path.join(sans_dir, "serialized_cat.json") |
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[ea5fa58] | 53 | if os.path.isfile(f_path): |
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| 54 | os.remove(f_path) |
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[e615a0d] | 55 | f_path = os.path.join(sans_dir, 'config', "custom_config.py") |
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| 56 | if os.path.isfile(f_path): |
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| 57 | os.remove(f_path) |
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| 58 | f_path = os.path.join(sans_dir, 'plugin_models') |
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| 59 | if os.path.isdir(f_path): |
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[5980b1a] | 60 | for f in os.listdir(f_path): |
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| 61 | if f in plugin_model_list: |
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| 62 | file_path = os.path.join(f_path, f) |
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[e615a0d] | 63 | os.remove(file_path) |
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| 64 | |
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| 65 | # 'sys.maxsize' and 64bit: Not supported for python2.5 |
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| 66 | is_64bits = False |
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| 67 | if sys.version_info >= (2, 6): |
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| 68 | is_64bits = sys.maxsize > 2**32 |
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| 69 | |
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| 70 | |
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[b30ed8f] | 71 | enable_openmp = True |
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[e79a467] | 72 | |
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[f468791] | 73 | if sys.platform =='darwin': |
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| 74 | if not is_64bits: |
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| 75 | # Disable OpenMP |
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| 76 | enable_openmp = False |
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| 77 | else: |
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| 78 | # Newer versions of Darwin don't support openmp |
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| 79 | try: |
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| 80 | darwin_ver = int(os.uname()[2].split('.')[0]) |
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| 81 | if darwin_ver >= 12: |
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| 82 | enable_openmp = False |
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| 83 | except: |
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| 84 | print "PROBLEM determining Darwin version" |
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[b30ed8f] | 85 | |
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| 86 | # Options to enable OpenMP |
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| 87 | copt = {'msvc': ['/openmp'], |
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| 88 | 'mingw32' : ['-fopenmp'], |
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| 89 | 'unix' : ['-fopenmp']} |
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| 90 | lopt = {'msvc': ['/MANIFEST'], |
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| 91 | 'mingw32' : ['-fopenmp'], |
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| 92 | 'unix' : ['-lgomp']} |
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[13f00a0] | 93 | |
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[ebdb833] | 94 | # Platform-specific link options |
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| 95 | platform_lopt = {'msvc' : ['/MANIFEST']} |
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[307fa4f] | 96 | platform_copt = {} |
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[b9c8fc5] | 97 | |
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| 98 | # Set copts to get compile working on OS X >= 10.9 using clang |
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| 99 | if sys.platform =='darwin': |
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| 100 | try: |
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| 101 | darwin_ver = int(os.uname()[2].split('.')[0]) |
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| 102 | if darwin_ver >= 13: |
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| 103 | platform_copt = {'unix' : ['-Wno-error=unused-command-line-argument-hard-error-in-future']} |
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| 104 | except: |
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| 105 | print "PROBLEM determining Darwin version" |
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| 106 | |
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[1829835] | 107 | |
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[ebdb833] | 108 | |
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[13f00a0] | 109 | class build_ext_subclass( build_ext ): |
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| 110 | def build_extensions(self): |
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| 111 | # Get 64-bitness |
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| 112 | c = self.compiler.compiler_type |
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| 113 | print "Compiling with %s (64bit=%s)" % (c, str(is_64bits)) |
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| 114 | |
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[ebdb833] | 115 | # OpenMP build options |
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[b30ed8f] | 116 | if enable_openmp: |
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[13f00a0] | 117 | if copt.has_key(c): |
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[5980b1a] | 118 | for e in self.extensions: |
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| 119 | e.extra_compile_args = copt[ c ] |
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[13f00a0] | 120 | if lopt.has_key(c): |
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| 121 | for e in self.extensions: |
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| 122 | e.extra_link_args = lopt[ c ] |
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| 123 | |
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[ebdb833] | 124 | # Platform-specific build options |
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| 125 | if platform_lopt.has_key(c): |
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| 126 | for e in self.extensions: |
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| 127 | e.extra_link_args = platform_lopt[ c ] |
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| 128 | |
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[1829835] | 129 | if platform_copt.has_key(c): |
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| 130 | for e in self.extensions: |
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| 131 | e.extra_compile_args = platform_copt[ c ] |
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| 132 | |
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| 133 | |
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[13f00a0] | 134 | build_ext.build_extensions(self) |
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[d6bc28cf] | 135 | |
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[968aa6e] | 136 | class BuildSphinxCommand(Command): |
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| 137 | description = "Build Sphinx documentation." |
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| 138 | user_options = [] |
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| 139 | |
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| 140 | def initialize_options(self): |
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| 141 | self.cwd = None |
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| 142 | |
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| 143 | def finalize_options(self): |
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| 144 | self.cwd = os.getcwd() |
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| 145 | |
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| 146 | def run(self): |
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| 147 | build_sphinx.clean() |
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| 148 | build_sphinx.retrieve_user_docs() |
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| 149 | build_sphinx.apidoc() |
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| 150 | build_sphinx.build() |
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| 151 | |
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[5980b1a] | 152 | # sans module |
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| 153 | package_dir["sans"] = os.path.join("src", "sans") |
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| 154 | packages.append("sans") |
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[29e96f3] | 155 | |
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[d6bc28cf] | 156 | # sans.invariant |
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[3d24489] | 157 | package_dir["sans.invariant"] = os.path.join("src", "sans", "invariant") |
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| 158 | packages.extend(["sans.invariant"]) |
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[d6bc28cf] | 159 | |
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| 160 | # sans.guiframe |
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[3d24489] | 161 | guiframe_path = os.path.join("src", "sans", "guiframe") |
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| 162 | package_dir["sans.guiframe"] = guiframe_path |
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| 163 | package_dir["sans.guiframe.local_perspectives"] = os.path.join(os.path.join(guiframe_path, "local_perspectives")) |
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| 164 | package_data["sans.guiframe"] = ['images/*', 'media/*'] |
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| 165 | packages.extend(["sans.guiframe", "sans.guiframe.local_perspectives"]) |
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[d6bc28cf] | 166 | # build local plugin |
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[5980b1a] | 167 | for d in os.listdir(os.path.join(guiframe_path, "local_perspectives")): |
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| 168 | if d not in ['.svn','__init__.py', '__init__.pyc']: |
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| 169 | package_name = "sans.guiframe.local_perspectives." + d |
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[3d24489] | 170 | packages.append(package_name) |
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[5980b1a] | 171 | package_dir[package_name] = os.path.join(guiframe_path, "local_perspectives", d) |
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[d6bc28cf] | 172 | |
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| 173 | # sans.dataloader |
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[3d24489] | 174 | package_dir["sans.dataloader"] = os.path.join("src", "sans", "dataloader") |
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[eda8972] | 175 | package_data["sans.dataloader.readers"] = ['defaults.xml','schema/*.xsd'] |
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| 176 | packages.extend(["sans.dataloader","sans.dataloader.readers","sans.dataloader.readers.schema"]) |
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[d6bc28cf] | 177 | |
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| 178 | # sans.calculator |
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[3d24489] | 179 | package_dir["sans.calculator"] =os.path.join("src", "sans", "calculator") |
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| 180 | packages.extend(["sans.calculator"]) |
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[d6bc28cf] | 181 | |
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| 182 | # sans.pr |
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[cb5fb4a] | 183 | numpy_incl_path = os.path.join(NUMPY_INC, "numpy") |
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[b8a8e4e] | 184 | srcdir = os.path.join("src", "sans", "pr", "c_extensions") |
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[3d24489] | 185 | package_dir["sans.pr.core"] = srcdir |
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| 186 | package_dir["sans.pr"] = os.path.join("src","sans", "pr") |
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| 187 | packages.extend(["sans.pr","sans.pr.core"]) |
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[d6bc28cf] | 188 | ext_modules.append( Extension("sans.pr.core.pr_inversion", |
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[3d24489] | 189 | sources = [os.path.join(srcdir, "Cinvertor.c"), |
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[29e96f3] | 190 | os.path.join(srcdir, "invertor.c"), |
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| 191 | ], |
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| 192 | include_dirs=[numpy_incl_path], |
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| 193 | ) ) |
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[d6bc28cf] | 194 | |
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| 195 | # sans.fit (park integration) |
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[3d24489] | 196 | package_dir["sans.fit"] = os.path.join("src", "sans", "fit") |
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| 197 | packages.append("sans.fit") |
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| 198 | |
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| 199 | # Perspectives |
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| 200 | package_dir["sans.perspectives"] = os.path.join("src", "sans", "perspectives") |
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| 201 | package_dir["sans.perspectives.pr"] = os.path.join("src", "sans", "perspectives", "pr") |
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| 202 | packages.extend(["sans.perspectives","sans.perspectives.pr"]) |
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| 203 | package_data["sans.perspectives.pr"] = ['images/*'] |
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| 204 | |
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| 205 | package_dir["sans.perspectives.invariant"] = os.path.join("src", "sans", "perspectives", "invariant") |
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| 206 | packages.extend(["sans.perspectives.invariant"]) |
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| 207 | package_data['sans.perspectives.invariant'] = [os.path.join("media",'*')] |
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| 208 | |
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| 209 | package_dir["sans.perspectives.fitting"] = os.path.join("src", "sans", "perspectives", "fitting") |
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| 210 | package_dir["sans.perspectives.fitting.plugin_models"] = os.path.join("src", "sans", "perspectives", "fitting", "plugin_models") |
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| 211 | packages.extend(["sans.perspectives.fitting", |
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| 212 | "sans.perspectives.fitting.plugin_models"]) |
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[8ca5890] | 213 | package_data['sans.perspectives.fitting'] = ['media/*','plugin_models/*'] |
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[3d24489] | 214 | |
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| 215 | packages.extend(["sans.perspectives", "sans.perspectives.calculator"]) |
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| 216 | package_data['sans.perspectives.calculator'] = ['images/*', 'media/*'] |
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| 217 | |
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[d6bc28cf] | 218 | # Data util |
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[76263a5] | 219 | package_dir["data_util"] = os.path.join("src", "sans", "data_util") |
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| 220 | packages.append("sans.data_util") |
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[d6bc28cf] | 221 | |
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| 222 | # Plottools |
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[f468791] | 223 | package_dir["sans.plottools"] = os.path.join("src", "sans", "plottools") |
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| 224 | packages.append("sans.plottools") |
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[d6bc28cf] | 225 | |
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| 226 | # Park 1.2.1 |
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| 227 | package_dir["park"]="park-1.2.1/park" |
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| 228 | packages.extend(["park"]) |
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| 229 | package_data["park"] = ['park-1.2.1/*.txt', 'park-1.2.1/park.epydoc'] |
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| 230 | ext_modules.append( Extension("park._modeling", |
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[8ab3302] | 231 | sources = [ os.path.join("park-1.2.1", |
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| 232 | "park", "lib", "modeling.cc"), |
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| 233 | os.path.join("park-1.2.1", |
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| 234 | "park", "lib", "resolution.c"), |
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[29e96f3] | 235 | ], |
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| 236 | ) ) |
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[d6bc28cf] | 237 | |
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| 238 | # Sans models |
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[b8a8e4e] | 239 | includedir = os.path.join("src", "sans", "models", "include") |
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[79d5b6c] | 240 | igordir = os.path.join("src", "sans", "models", "c_extension", "libigor") |
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| 241 | cephes_dir = os.path.join("src", "sans", "models", "c_extension", "cephes") |
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| 242 | c_model_dir = os.path.join("src", "sans", "models", "c_extension", "c_models") |
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| 243 | smear_dir = os.path.join("src", "sans", "models", "c_extension", "c_smearer") |
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| 244 | gen_dir = os.path.join("src", "sans", "models", "c_extension", "c_gen") |
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| 245 | wrapper_dir = os.path.join("src", "sans", "models", "c_extension", "python_wrapper", "generated") |
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[b8a8e4e] | 246 | model_dir = os.path.join("src", "sans","models") |
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[082c565] | 247 | |
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[78f74bd7] | 248 | if os.path.isdir(wrapper_dir): |
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| 249 | for file in os.listdir(wrapper_dir): |
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| 250 | file_path = os.path.join(wrapper_dir, file) |
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| 251 | os.remove(file_path) |
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| 252 | else: |
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[0ba3b08] | 253 | os.makedirs(wrapper_dir) |
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[79d5b6c] | 254 | sys.path.append(os.path.join("src", "sans", "models", "c_extension", "python_wrapper")) |
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[3d24489] | 255 | from wrapping import generate_wrappers |
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| 256 | generate_wrappers(header_dir = includedir, |
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| 257 | output_dir = model_dir, |
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| 258 | c_wrapper_dir = wrapper_dir) |
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[2d1b700] | 259 | |
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[101065a] | 260 | IGNORED_FILES = [".svn"] |
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[9cde4cc] | 261 | if not os.name=='nt': |
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[2c63e80e] | 262 | IGNORED_FILES.extend(["gamma_win.c","winFuncs.c"]) |
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[9cde4cc] | 263 | |
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[d6bc28cf] | 264 | EXTENSIONS = [".c", ".cpp"] |
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| 265 | |
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| 266 | def append_file(file_list, dir_path): |
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| 267 | """ |
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| 268 | Add sources file to sources |
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| 269 | """ |
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| 270 | for f in os.listdir(dir_path): |
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| 271 | if os.path.isfile(os.path.join(dir_path, f)): |
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| 272 | _, ext = os.path.splitext(f) |
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| 273 | if ext.lower() in EXTENSIONS and f not in IGNORED_FILES: |
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| 274 | file_list.append(os.path.join(dir_path, f)) |
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| 275 | elif os.path.isdir(os.path.join(dir_path, f)) and \ |
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| 276 | not f.startswith("."): |
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| 277 | sub_dir = os.path.join(dir_path, f) |
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| 278 | for new_f in os.listdir(sub_dir): |
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| 279 | if os.path.isfile(os.path.join(sub_dir, new_f)): |
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| 280 | _, ext = os.path.splitext(new_f) |
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| 281 | if ext.lower() in EXTENSIONS and\ |
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| 282 | new_f not in IGNORED_FILES: |
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| 283 | file_list.append(os.path.join(sub_dir, new_f)) |
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| 284 | |
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| 285 | model_sources = [] |
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| 286 | append_file(file_list=model_sources, dir_path=igordir) |
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| 287 | append_file(file_list=model_sources, dir_path=c_model_dir) |
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[67424cd] | 288 | append_file(file_list=model_sources, dir_path=wrapper_dir) |
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| 289 | |
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[d6bc28cf] | 290 | smear_sources = [] |
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| 291 | append_file(file_list=smear_sources, dir_path=smear_dir) |
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| 292 | |
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[5980b1a] | 293 | package_dir["sans.models"] = model_dir |
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| 294 | package_dir["sans.models.sans_extension"] = os.path.join("src", "sans", "models", "sans_extension") |
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| 295 | package_data['sans.models'] = [os.path.join('media', "*.*")] |
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| 296 | package_data['sans.models'] += [os.path.join('media','img', "*.*")] |
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| 297 | packages.extend(["sans.models","sans.models.sans_extension"]) |
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| 298 | |
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| 299 | smearer_sources = [os.path.join(smear_dir, "smearer.cpp"), |
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| 300 | os.path.join(smear_dir, "smearer_module.cpp")] |
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| 301 | geni_sources = [os.path.join(gen_dir, "sld2i_module.cpp")] |
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| 302 | if os.name=='nt': |
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| 303 | smearer_sources.append(os.path.join(igordir, "winFuncs.c")) |
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| 304 | geni_sources.append(os.path.join(igordir, "winFuncs.c")) |
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| 305 | ext_modules.extend( [ Extension("sans.models.sans_extension.c_models", |
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| 306 | sources=model_sources, |
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| 307 | include_dirs=[igordir, includedir, |
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| 308 | c_model_dir, numpy_incl_path, cephes_dir], |
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| 309 | ), |
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| 310 | # Smearer extension |
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| 311 | Extension("sans.models.sans_extension.smearer", |
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| 312 | sources = smearer_sources, |
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| 313 | include_dirs=[igordir, |
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| 314 | smear_dir, numpy_incl_path], |
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| 315 | ), |
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| 316 | |
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| 317 | Extension("sans.models.sans_extension.smearer2d_helper", |
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| 318 | sources = [os.path.join(smear_dir, |
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| 319 | "smearer2d_helper_module.cpp"), |
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| 320 | os.path.join(smear_dir, |
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| 321 | "smearer2d_helper.cpp"),], |
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| 322 | include_dirs=[smear_dir, numpy_incl_path], |
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| 323 | ), |
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| 324 | |
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| 325 | Extension("sans.models.sans_extension.sld2i", |
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| 326 | sources = [os.path.join(gen_dir, |
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| 327 | "sld2i_module.cpp"), |
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| 328 | os.path.join(gen_dir, |
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| 329 | "sld2i.cpp"), |
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| 330 | os.path.join(c_model_dir, |
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| 331 | "libfunc.c"), |
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| 332 | os.path.join(c_model_dir, |
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| 333 | "librefl.c"),], |
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| 334 | include_dirs=[gen_dir, includedir, |
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| 335 | c_model_dir, numpy_incl_path], |
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| 336 | ) |
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| 337 | ] ) |
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| 338 | |
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[c329f4d] | 339 | # SasView |
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[df7a7e3] | 340 | |
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[d6bc28cf] | 341 | package_dir["sans.sansview"] = "sansview" |
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[ea5fa58] | 342 | package_data['sans.sansview'] = ['images/*', 'media/*', 'test/*', |
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[27b7acc] | 343 | 'default_categories.json'] |
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[d6bc28cf] | 344 | packages.append("sans.sansview") |
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| 345 | |
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[8ab3302] | 346 | #required = ['lxml>=2.2.2', 'numpy>=1.4.1', 'matplotlib>=0.99.1.1', |
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| 347 | # 'wxPython>=2.8.11', 'pil', |
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| 348 | # 'periodictable>=1.3.0', 'scipy>=0.7.2'] |
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[6a84c0c] | 349 | required = ['lxml','periodictable>=1.3.1','pyparsing<2.0.0'] |
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[213b445] | 350 | |
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[95fe70d] | 351 | if os.name=='nt': |
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[7a211030] | 352 | required.extend(['html5lib', 'reportlab']) |
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[7f59928e] | 353 | else: |
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[202c1ef] | 354 | required.extend(['pil']) |
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[30ad350] | 355 | |
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[5980b1a] | 356 | # Set up SasView |
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[d6bc28cf] | 357 | setup( |
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[c329f4d] | 358 | name="sasview", |
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[5548954] | 359 | version = VERSION, |
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[c329f4d] | 360 | description = "SasView application", |
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[d6bc28cf] | 361 | author = "University of Tennessee", |
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| 362 | author_email = "sansdanse@gmail.com", |
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[5980b1a] | 363 | url = "http://sasview.org", |
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[d6bc28cf] | 364 | license = "PSF", |
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[c329f4d] | 365 | keywords = "small-angle x-ray and neutron scattering analysis", |
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[d6bc28cf] | 366 | download_url = "https://sourceforge.net/projects/sansviewproject/files/", |
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| 367 | package_dir = package_dir, |
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| 368 | packages = packages, |
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| 369 | package_data = package_data, |
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| 370 | ext_modules = ext_modules, |
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| 371 | install_requires = required, |
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[60f7d19] | 372 | zip_safe = False, |
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[a7b774d] | 373 | entry_points = { |
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| 374 | 'console_scripts':[ |
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[9a3b713] | 375 | "sasview = sans.sansview.sansview:run", |
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[a7b774d] | 376 | ] |
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[13f00a0] | 377 | }, |
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[968aa6e] | 378 | cmdclass = {'build_ext': build_ext_subclass, |
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| 379 | 'docs': BuildSphinxCommand} |
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[d113531] | 380 | ) |
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