[d89f09b] | 1 | import os,os.path, re |
---|
| 2 | import sys, wx, logging |
---|
| 3 | import string, numpy, pylab, math |
---|
| 4 | |
---|
[3b19ac9] | 5 | from copy import deepcopy |
---|
[d89f09b] | 6 | from sans.guitools.plottables import Data1D, Theory1D |
---|
| 7 | from sans.guitools.PlotPanel import PlotPanel |
---|
| 8 | from sans.guicomm.events import NewPlotEvent, StatusEvent |
---|
[3b19ac9] | 9 | from sans.fit.AbstractFitEngine import Model,Data |
---|
[d89f09b] | 10 | from fitproblem import FitProblem |
---|
| 11 | from fitpanel import FitPanel |
---|
| 12 | |
---|
| 13 | import models |
---|
| 14 | import fitpage |
---|
[dabb633] | 15 | import park |
---|
[3b19ac9] | 16 | |
---|
[d89f09b] | 17 | class PlottableData(Data,Data1D): |
---|
[3b19ac9] | 18 | """ class plottable data: class allowing to plot Data type on panel""" |
---|
[d89f09b] | 19 | def __init__(self,data,data1d): |
---|
| 20 | self.x = data1d.x |
---|
| 21 | self.y = data1d.y |
---|
[3b19ac9] | 22 | self.dx = data1d.dx |
---|
| 23 | self.dy = data1d.dy |
---|
[d89f09b] | 24 | |
---|
[3b19ac9] | 25 | self.group_id = data1d.group_id |
---|
[d89f09b] | 26 | x_name, x_units = data1d.get_xaxis() |
---|
| 27 | y_name, y_units = data1d.get_yaxis() |
---|
| 28 | self.xaxis( x_name, x_units) |
---|
| 29 | self.yaxis( y_name, y_units ) |
---|
[3b19ac9] | 30 | self.qmin = data.qmin |
---|
| 31 | self.qmax = data.qmax |
---|
| 32 | |
---|
[d89f09b] | 33 | class Plugin: |
---|
| 34 | """ |
---|
[dabb633] | 35 | Fitting plugin is used to perform fit |
---|
[d89f09b] | 36 | """ |
---|
| 37 | def __init__(self): |
---|
| 38 | ## Plug-in name |
---|
| 39 | self.sub_menu = "Fitting" |
---|
| 40 | |
---|
| 41 | ## Reference to the parent window |
---|
| 42 | self.parent = None |
---|
| 43 | self.menu_mng = models.ModelManager() |
---|
| 44 | ## List of panels for the simulation perspective (names) |
---|
| 45 | self.perspective = [] |
---|
| 46 | # Start with a good default |
---|
| 47 | self.elapsed = 0.022 |
---|
| 48 | self.fitter = None |
---|
| 49 | |
---|
| 50 | #Flag to let the plug-in know that it is running standalone |
---|
| 51 | self.standalone=True |
---|
| 52 | ## Fit engine |
---|
[3b19ac9] | 53 | self._fit_engine = 'scipy' |
---|
[d89f09b] | 54 | # Log startup |
---|
| 55 | logging.info("Fitting plug-in started") |
---|
| 56 | |
---|
| 57 | def populate_menu(self, id, owner): |
---|
| 58 | """ |
---|
| 59 | Create a menu for the Fitting plug-in |
---|
| 60 | @param id: id to create a menu |
---|
| 61 | @param owner: owner of menu |
---|
| 62 | @ return : list of information to populate the main menu |
---|
| 63 | """ |
---|
| 64 | #Menu for fitting |
---|
| 65 | self.menu1 = wx.Menu() |
---|
| 66 | id1 = wx.NewId() |
---|
| 67 | self.menu1.Append(id1, '&Show fit panel') |
---|
| 68 | wx.EVT_MENU(owner, id1, self.on_perspective) |
---|
[3b19ac9] | 69 | id3 = wx.NewId() |
---|
| 70 | self.menu1.Append(id3,'&scipy \ park','toggle engine to park or scipy') |
---|
| 71 | wx.EVT_MENU(owner, id3, self._onset_engine) |
---|
[d89f09b] | 72 | |
---|
| 73 | #menu for model |
---|
| 74 | menu2 = wx.Menu() |
---|
| 75 | self.menu_mng.populate_menu(menu2, owner) |
---|
| 76 | id2 = wx.NewId() |
---|
| 77 | owner.Bind(models.EVT_MODEL,self._on_model_menu) |
---|
| 78 | self.fit_panel.set_owner(owner) |
---|
| 79 | self.fit_panel.set_model_list(self.menu_mng.get_model_list()) |
---|
| 80 | owner.Bind(fitpage.EVT_MODEL_BOX,self._on_model_panel) |
---|
[3b19ac9] | 81 | #create menubar items |
---|
[d89f09b] | 82 | return [(id, self.menu1, "Fitting"),(id2, menu2, "Model")] |
---|
| 83 | |
---|
| 84 | |
---|
| 85 | def help(self, evt): |
---|
| 86 | """ |
---|
| 87 | Show a general help dialog. |
---|
| 88 | TODO: replace the text with a nice image |
---|
| 89 | """ |
---|
| 90 | pass |
---|
| 91 | |
---|
| 92 | def get_context_menu(self, graph=None): |
---|
| 93 | """ |
---|
| 94 | Get the context menu items available for P(r) |
---|
| 95 | @param graph: the Graph object to which we attach the context menu |
---|
| 96 | @return: a list of menu items with call-back function |
---|
| 97 | """ |
---|
| 98 | self.graph=graph |
---|
| 99 | for item in graph.plottables: |
---|
| 100 | if item.name==graph.selected_plottable and item.__class__.__name__ is not "Theory1D": |
---|
| 101 | return [["Select Data", "Dialog with fitting parameters ", self._onSelect]] |
---|
| 102 | return [] |
---|
| 103 | |
---|
| 104 | |
---|
| 105 | def get_panels(self, parent): |
---|
| 106 | """ |
---|
| 107 | Create and return a list of panel objects |
---|
| 108 | """ |
---|
| 109 | self.parent = parent |
---|
| 110 | # Creation of the fit panel |
---|
| 111 | self.fit_panel = FitPanel(self.parent, -1) |
---|
| 112 | #Set the manager forthe main panel |
---|
| 113 | self.fit_panel.set_manager(self) |
---|
| 114 | # List of windows used for the perspective |
---|
| 115 | self.perspective = [] |
---|
| 116 | self.perspective.append(self.fit_panel.window_name) |
---|
| 117 | # take care of saving data, model and page associated with each other |
---|
[3b19ac9] | 118 | self.page_finder = {} |
---|
| 119 | #index number to create random model name |
---|
| 120 | self.index_model = 0 |
---|
| 121 | #create the fitting panel |
---|
[d89f09b] | 122 | return [self.fit_panel] |
---|
| 123 | |
---|
| 124 | |
---|
| 125 | def get_perspective(self): |
---|
| 126 | """ |
---|
| 127 | Get the list of panel names for this perspective |
---|
| 128 | """ |
---|
| 129 | return self.perspective |
---|
| 130 | |
---|
| 131 | |
---|
| 132 | def on_perspective(self, event): |
---|
| 133 | """ |
---|
| 134 | Call back function for the perspective menu item. |
---|
| 135 | We notify the parent window that the perspective |
---|
| 136 | has changed. |
---|
| 137 | """ |
---|
| 138 | self.parent.set_perspective(self.perspective) |
---|
| 139 | |
---|
| 140 | |
---|
| 141 | def post_init(self): |
---|
| 142 | """ |
---|
| 143 | Post initialization call back to close the loose ends |
---|
| 144 | [Somehow openGL needs this call] |
---|
| 145 | """ |
---|
| 146 | self.parent.set_perspective(self.perspective) |
---|
| 147 | |
---|
| 148 | |
---|
| 149 | def _onSelect(self,event): |
---|
| 150 | """ |
---|
| 151 | when Select data to fit a new page is created .Its reference is |
---|
| 152 | added to self.page_finder |
---|
| 153 | """ |
---|
| 154 | self.panel = event.GetEventObject() |
---|
| 155 | for item in self.panel.graph.plottables: |
---|
| 156 | if item.name == self.panel.graph.selected_plottable: |
---|
[3b19ac9] | 157 | #find a name for the page created for notebook |
---|
[d89f09b] | 158 | try: |
---|
| 159 | name = item.group_id # item in Data1D |
---|
| 160 | except: |
---|
| 161 | name = 'Fit' |
---|
| 162 | try: |
---|
[1b07935d] | 163 | page = self.fit_panel.add_fit_page(name) |
---|
[3b19ac9] | 164 | # add data associated to the page created |
---|
[d89f09b] | 165 | page.set_data_name(item) |
---|
[3b19ac9] | 166 | #create a fitproblem storing all link to data,model,page creation |
---|
[d89f09b] | 167 | self.page_finder[page]= FitProblem() |
---|
[3b19ac9] | 168 | data_for_park= Data(sans_data=item) |
---|
| 169 | datap=PlottableData(data=data_for_park,data1d=item) |
---|
| 170 | self.page_finder[page].add_data(datap) |
---|
[d89f09b] | 171 | except: |
---|
| 172 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: \ |
---|
| 173 | data already Selected ")) |
---|
| 174 | |
---|
| 175 | |
---|
| 176 | def get_page_finder(self): |
---|
| 177 | """ @return self.page_finder used also by simfitpage.py""" |
---|
| 178 | return self.page_finder |
---|
| 179 | |
---|
| 180 | |
---|
[3b19ac9] | 181 | def set_page_finder(self,modelname,names,values): |
---|
[d89f09b] | 182 | """ |
---|
| 183 | Used by simfitpage.py to reset a parameter given the string constrainst. |
---|
| 184 | @param modelname: the name ot the model for with the parameter has to reset |
---|
| 185 | @param value: can be a string in this case. |
---|
[3b19ac9] | 186 | @param names: the paramter name |
---|
[d89f09b] | 187 | @note: expecting park used for fit. |
---|
| 188 | """ |
---|
| 189 | sim_page=self.fit_panel.get_page(0) |
---|
| 190 | for page, value in self.page_finder.iteritems(): |
---|
| 191 | if page != sim_page: |
---|
| 192 | list=value.get_model() |
---|
| 193 | model=list[0] |
---|
| 194 | if model.name== modelname: |
---|
[3b19ac9] | 195 | value.set_model_param(names,values) |
---|
[d89f09b] | 196 | break |
---|
| 197 | |
---|
| 198 | |
---|
| 199 | |
---|
| 200 | def split_string(self,item): |
---|
| 201 | """ |
---|
[3b19ac9] | 202 | receive a word containing dot and split it. used to split parameterset |
---|
| 203 | name into model name and parameter name example: |
---|
| 204 | paramaterset (item) = M1.A |
---|
| 205 | @return model_name =M1 , parameter name =A |
---|
[d89f09b] | 206 | """ |
---|
| 207 | if string.find(item,".")!=-1: |
---|
| 208 | param_names= re.split("\.",item) |
---|
| 209 | model_name=param_names[0] |
---|
| 210 | param_name=param_names[1] |
---|
| 211 | return model_name,param_name |
---|
| 212 | |
---|
| 213 | |
---|
| 214 | def _single_fit_completed(self,result,pars,current_pg,qmin,qmax): |
---|
| 215 | """ |
---|
[3b19ac9] | 216 | Display fit result on one page of the notebook. |
---|
| 217 | @param result: result of fit |
---|
| 218 | @param pars: list of names of parameters fitted |
---|
| 219 | @param current_pg: the page where information will be displayed |
---|
| 220 | @param qmin: the minimum value of x to replot the model |
---|
| 221 | @param qmax: the maximum value of x to replot model |
---|
[d89f09b] | 222 | |
---|
| 223 | """ |
---|
| 224 | try: |
---|
| 225 | for page, value in self.page_finder.iteritems(): |
---|
| 226 | if page== current_pg: |
---|
| 227 | data = value.get_data() |
---|
| 228 | list = value.get_model() |
---|
| 229 | model= list[0] |
---|
| 230 | break |
---|
| 231 | i = 0 |
---|
| 232 | for name in pars: |
---|
| 233 | if result.pvec.__class__==numpy.float64: |
---|
[1b07935d] | 234 | model.setParam(name,result.pvec) |
---|
[d89f09b] | 235 | else: |
---|
[1b07935d] | 236 | model.setParam(name,result.pvec[i]) |
---|
[d89f09b] | 237 | i += 1 |
---|
[3b19ac9] | 238 | current_pg.onsetValues(result.fitness, result.pvec,result.stderr) |
---|
[d89f09b] | 239 | self.plot_helper(currpage=current_pg,qmin=qmin,qmax=qmax) |
---|
| 240 | except: |
---|
[060b857] | 241 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: %s" % sys.exc_value)) |
---|
[d89f09b] | 242 | |
---|
| 243 | |
---|
| 244 | def _simul_fit_completed(self,result,qmin,qmax): |
---|
| 245 | """ |
---|
| 246 | Parameter estimation completed, |
---|
| 247 | display the results to the user |
---|
| 248 | @param alpha: estimated best alpha |
---|
| 249 | @param elapsed: computation time |
---|
| 250 | """ |
---|
| 251 | try: |
---|
| 252 | for page, value in self.page_finder.iteritems(): |
---|
[3b19ac9] | 253 | if value.get_scheduled()=='True': |
---|
| 254 | data = value.get_data() |
---|
| 255 | list = value.get_model() |
---|
| 256 | model= list[0] |
---|
| 257 | |
---|
| 258 | small_out = [] |
---|
| 259 | small_cov = [] |
---|
| 260 | i = 0 |
---|
| 261 | #Separate result in to data corresponding to each page |
---|
| 262 | for p in result.parameters: |
---|
| 263 | model_name,param_name = self.split_string(p.name) |
---|
| 264 | if model.name == model_name: |
---|
| 265 | small_out.append(p.value ) |
---|
| 266 | small_cov.append(p.stderr) |
---|
| 267 | model.setParam(param_name,p.value) |
---|
| 268 | # Display result on each page |
---|
| 269 | page.onsetValues(result.fitness, small_out,small_cov) |
---|
| 270 | #Replot model |
---|
| 271 | self.plot_helper(currpage= page,qmin= qmin,qmax= qmax) |
---|
[d89f09b] | 272 | except: |
---|
| 273 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: %s" % sys.exc_value)) |
---|
| 274 | |
---|
[4fc6dbf] | 275 | |
---|
[d89f09b] | 276 | def _on_single_fit(self,id=None,qmin=None,qmax=None): |
---|
| 277 | """ |
---|
| 278 | perform fit for the current page and return chisqr,out and cov |
---|
| 279 | @param engineName: type of fit to be performed |
---|
| 280 | @param id: unique id corresponding to a fit problem(model, set of data) |
---|
| 281 | @param model: model to fit |
---|
| 282 | |
---|
| 283 | """ |
---|
| 284 | #set an engine to perform fit |
---|
| 285 | from sans.fit.Fitting import Fit |
---|
| 286 | self.fitter= Fit(self._fit_engine) |
---|
[3b19ac9] | 287 | #Setting an id to store model and data in fit engine |
---|
[d89f09b] | 288 | if id==None: |
---|
| 289 | id=0 |
---|
[3b19ac9] | 290 | self.id = id |
---|
| 291 | #Get information (model , data) related to the page on |
---|
| 292 | #with the fit will be perform |
---|
[d89f09b] | 293 | current_pg=self.fit_panel.get_current_page() |
---|
| 294 | for page, value in self.page_finder.iteritems(): |
---|
| 295 | if page ==current_pg : |
---|
| 296 | data = value.get_data() |
---|
| 297 | list=value.get_model() |
---|
| 298 | model=list[0] |
---|
| 299 | |
---|
[3b19ac9] | 300 | #Create list of parameters for fitting used |
---|
[d89f09b] | 301 | pars=[] |
---|
| 302 | templist=[] |
---|
| 303 | try: |
---|
| 304 | templist=current_pg.get_param_list() |
---|
| 305 | except: |
---|
| 306 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: %s" % sys.exc_value)) |
---|
| 307 | return |
---|
[3b19ac9] | 308 | |
---|
[d89f09b] | 309 | for element in templist: |
---|
| 310 | try: |
---|
| 311 | pars.append(str(element[0].GetLabelText())) |
---|
| 312 | except: |
---|
| 313 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: %s" % sys.exc_value)) |
---|
| 314 | return |
---|
[3b19ac9] | 315 | # make sure to keep an alphabetic order |
---|
| 316 | #of parameter names in the list |
---|
[d89f09b] | 317 | pars.sort() |
---|
[3b19ac9] | 318 | #Do the single fit |
---|
[d89f09b] | 319 | try: |
---|
[3b19ac9] | 320 | self.fitter.set_model(Model(model), self.id, pars) |
---|
| 321 | self.fitter.set_data(data,self.id,qmin,qmax) |
---|
| 322 | |
---|
[d89f09b] | 323 | result=self.fitter.fit() |
---|
| 324 | self._single_fit_completed(result,pars,current_pg,qmin,qmax) |
---|
| 325 | |
---|
| 326 | except: |
---|
| 327 | wx.PostEvent(self.parent, StatusEvent(status="Single Fit error: %s" % sys.exc_value)) |
---|
| 328 | return |
---|
| 329 | |
---|
| 330 | def _on_simul_fit(self, id=None,qmin=None,qmax=None): |
---|
| 331 | """ |
---|
| 332 | perform fit for all the pages selected on simpage and return chisqr,out and cov |
---|
| 333 | @param engineName: type of fit to be performed |
---|
| 334 | @param id: unique id corresponding to a fit problem(model, set of data) |
---|
| 335 | in park_integration |
---|
| 336 | @param model: model to fit |
---|
| 337 | |
---|
| 338 | """ |
---|
| 339 | #set an engine to perform fit |
---|
| 340 | from sans.fit.Fitting import Fit |
---|
| 341 | self.fitter= Fit(self._fit_engine) |
---|
[3b19ac9] | 342 | |
---|
[d89f09b] | 343 | #Setting an id to store model and data |
---|
| 344 | if id==None: |
---|
| 345 | id = 0 |
---|
| 346 | self.id = id |
---|
[3b19ac9] | 347 | |
---|
[d89f09b] | 348 | for page, value in self.page_finder.iteritems(): |
---|
| 349 | try: |
---|
[3b19ac9] | 350 | if value.get_scheduled()=='True': |
---|
| 351 | data = value.get_data() |
---|
| 352 | list = value.get_model() |
---|
| 353 | model= list[0] |
---|
[d89f09b] | 354 | #Create dictionary of parameters for fitting used |
---|
| 355 | pars = [] |
---|
| 356 | templist = [] |
---|
[3b19ac9] | 357 | templist = page.get_param_list() |
---|
[d89f09b] | 358 | for element in templist: |
---|
| 359 | try: |
---|
| 360 | name = str(element[0].GetLabelText()) |
---|
| 361 | pars.append(name) |
---|
| 362 | except: |
---|
| 363 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: %s" % sys.exc_value)) |
---|
| 364 | return |
---|
[3b19ac9] | 365 | self.fitter.set_model(Model(model), self.id, pars) |
---|
[d89f09b] | 366 | self.fitter.set_data(data,self.id,qmin,qmax) |
---|
[3b19ac9] | 367 | |
---|
| 368 | self.id += 1 |
---|
[d89f09b] | 369 | except: |
---|
[3b19ac9] | 370 | wx.PostEvent(self.parent, StatusEvent(status="Fitting error: %s" % sys.exc_value)) |
---|
| 371 | return |
---|
[dabb633] | 372 | #Do the simultaneous fit |
---|
[d89f09b] | 373 | try: |
---|
| 374 | result=self.fitter.fit() |
---|
| 375 | self._simul_fit_completed(result,qmin,qmax) |
---|
| 376 | except: |
---|
| 377 | wx.PostEvent(self.parent, StatusEvent(status="Simultaneous Fitting error: %s" % sys.exc_value)) |
---|
| 378 | return |
---|
[3b19ac9] | 379 | |
---|
| 380 | |
---|
| 381 | def _onset_engine(self,event): |
---|
| 382 | """ set engine to scipy""" |
---|
| 383 | if self._fit_engine== 'park': |
---|
| 384 | self._on_change_engine('scipy') |
---|
| 385 | else: |
---|
| 386 | self._on_change_engine('park') |
---|
| 387 | wx.PostEvent(self.parent, StatusEvent(status="Engine set to: %s" % self._fit_engine)) |
---|
| 388 | |
---|
| 389 | |
---|
[d89f09b] | 390 | def _on_change_engine(self, engine='park'): |
---|
| 391 | """ |
---|
| 392 | Allow to select the type of engine to perform fit |
---|
| 393 | @param engine: the key work of the engine |
---|
| 394 | """ |
---|
| 395 | self._fit_engine = engine |
---|
| 396 | |
---|
| 397 | |
---|
| 398 | def _on_model_panel(self, evt): |
---|
| 399 | """ |
---|
| 400 | react to model selection on any combo box or model menu.plot the model |
---|
| 401 | """ |
---|
| 402 | model = evt.model |
---|
| 403 | name = evt.name |
---|
| 404 | sim_page=self.fit_panel.get_page(0) |
---|
| 405 | current_pg = self.fit_panel.get_current_page() |
---|
| 406 | if current_pg != sim_page: |
---|
| 407 | current_pg.set_model_name(name) |
---|
| 408 | current_pg.set_panel(model) |
---|
| 409 | try: |
---|
| 410 | data=self.page_finder[current_pg].get_data() |
---|
| 411 | M_name="M"+str(self.index_model)+"= "+name+"("+data.group_id+")" |
---|
| 412 | except: |
---|
| 413 | raise |
---|
| 414 | M_name="M"+str(self.index_model)+"= "+name |
---|
| 415 | model.name="M"+str(self.index_model) |
---|
| 416 | self.index_model += 1 |
---|
[55fd102] | 417 | #self.page_finder[current_pg].set_theory("Fitness") |
---|
[1b07935d] | 418 | self.page_finder[current_pg].set_model(model,M_name) |
---|
[d89f09b] | 419 | self.plot_helper(currpage= current_pg,qmin= None,qmax= None) |
---|
| 420 | sim_page.add_model(self.page_finder) |
---|
| 421 | |
---|
| 422 | |
---|
| 423 | def redraw_model(self,qmin= None,qmax= None): |
---|
| 424 | """ |
---|
| 425 | Draw a theory according to model changes or data range. |
---|
| 426 | @param qmin: the minimum value plotted for theory |
---|
| 427 | @param qmax: the maximum value plotted for theory |
---|
| 428 | """ |
---|
| 429 | current_pg=self.fit_panel.get_current_page() |
---|
| 430 | for page, value in self.page_finder.iteritems(): |
---|
| 431 | if page ==current_pg : |
---|
| 432 | break |
---|
| 433 | self.plot_helper(currpage=page,qmin= qmin,qmax= qmax) |
---|
| 434 | |
---|
| 435 | def plot_helper(self,currpage,qmin=None,qmax=None): |
---|
| 436 | """ |
---|
| 437 | Plot a theory given a model and data |
---|
| 438 | @param model: the model from where the theory is derived |
---|
| 439 | @param currpage: page in a dictionary referring to some data |
---|
| 440 | """ |
---|
| 441 | if self.fit_panel.get_page_count() >1: |
---|
| 442 | for page in self.page_finder.iterkeys(): |
---|
| 443 | if page==currpage : |
---|
| 444 | break |
---|
| 445 | data=self.page_finder[page].get_data() |
---|
| 446 | list=self.page_finder[page].get_model() |
---|
| 447 | model=list[0] |
---|
| 448 | if data!=None: |
---|
| 449 | theory = Theory1D(x=[], y=[]) |
---|
[55fd102] | 450 | theory.name = model.name |
---|
[d89f09b] | 451 | theory.group_id = data.group_id |
---|
| 452 | |
---|
| 453 | x_name, x_units = data.get_xaxis() |
---|
| 454 | y_name, y_units = data.get_yaxis() |
---|
| 455 | theory.xaxis(x_name, x_units) |
---|
| 456 | theory.yaxis(y_name, y_units) |
---|
| 457 | |
---|
| 458 | if qmin == None : |
---|
| 459 | qmin = min(data.x) |
---|
| 460 | if qmax == None : |
---|
| 461 | qmax = max(data.x) |
---|
| 462 | try: |
---|
| 463 | tempx = qmin |
---|
[1b07935d] | 464 | tempy = model.run(qmin) |
---|
[d89f09b] | 465 | theory.x.append(tempx) |
---|
| 466 | theory.y.append(tempy) |
---|
| 467 | except : |
---|
| 468 | wx.PostEvent(self.parent, StatusEvent(status="fitting \ |
---|
| 469 | skipping point x %g %s" %(qmin, sys.exc_value))) |
---|
| 470 | |
---|
| 471 | for i in range(len(data.x)): |
---|
| 472 | try: |
---|
| 473 | if data.x[i]> qmin and data.x[i]< qmax: |
---|
| 474 | tempx = data.x[i] |
---|
[1b07935d] | 475 | tempy = model.run(tempx) |
---|
[d89f09b] | 476 | |
---|
| 477 | theory.x.append(tempx) |
---|
| 478 | theory.y.append(tempy) |
---|
| 479 | except: |
---|
| 480 | wx.PostEvent(self.parent, StatusEvent(status="fitting \ |
---|
| 481 | skipping point x %g %s" %(data.x[i], sys.exc_value))) |
---|
| 482 | try: |
---|
| 483 | tempx = qmax |
---|
[1b07935d] | 484 | tempy = model.run(qmax) |
---|
[d89f09b] | 485 | theory.x.append(tempx) |
---|
| 486 | theory.y.append(tempy) |
---|
| 487 | except: |
---|
| 488 | wx.PostEvent(self.parent, StatusEvent(status="fitting \ |
---|
| 489 | skipping point x %g %s" %(qmax, sys.exc_value))) |
---|
| 490 | try: |
---|
| 491 | from sans.guicomm.events import NewPlotEvent |
---|
| 492 | wx.PostEvent(self.parent, NewPlotEvent(plot=theory, title="Analytical model")) |
---|
| 493 | except: |
---|
| 494 | print "SimView.complete1D: could not import sans.guicomm.events" |
---|
| 495 | |
---|
| 496 | |
---|
| 497 | def _on_model_menu(self, evt): |
---|
| 498 | """ |
---|
| 499 | Plot a theory from a model selected from the menu |
---|
| 500 | """ |
---|
[1b07935d] | 501 | name="Model View" |
---|
[49b7efa] | 502 | model=evt.modelinfo.model() |
---|
| 503 | description=evt.modelinfo.description |
---|
| 504 | self.fit_panel.add_model_page(model,description,name) |
---|
| 505 | self.draw_model(model) |
---|
[1b07935d] | 506 | |
---|
| 507 | def draw_model(self,model): |
---|
[3b19ac9] | 508 | """ |
---|
| 509 | draw model with default data value |
---|
| 510 | """ |
---|
[d89f09b] | 511 | x = pylab.arange(0.001, 0.1, 0.001) |
---|
| 512 | xlen = len(x) |
---|
| 513 | dy = numpy.zeros(xlen) |
---|
| 514 | y = numpy.zeros(xlen) |
---|
| 515 | |
---|
| 516 | for i in range(xlen): |
---|
[1b07935d] | 517 | y[i] = model.run(x[i]) |
---|
[d89f09b] | 518 | dy[i] = math.sqrt(math.fabs(y[i])) |
---|
| 519 | try: |
---|
| 520 | |
---|
| 521 | new_plot = Theory1D(x, y) |
---|
[4c530a5] | 522 | new_plot.name = model.name |
---|
[d89f09b] | 523 | new_plot.xaxis("\\rm{Q}", 'A^{-1}') |
---|
| 524 | new_plot.yaxis("\\rm{Intensity} ","cm^{-1}") |
---|
[55fd102] | 525 | new_plot.group_id ="Fitness" |
---|
[d89f09b] | 526 | |
---|
| 527 | wx.PostEvent(self.parent, NewPlotEvent(plot=new_plot, title="Analytical model")) |
---|
| 528 | except: |
---|
[4c530a5] | 529 | print "SimView.complete1D: could not import sans.guicomm.events\n %s" % sys.exc_value |
---|
| 530 | logging.error("SimView.complete1D: could not import sans.guicomm.events\n %s" % sys.exc_value) |
---|
[d89f09b] | 531 | |
---|
| 532 | if __name__ == "__main__": |
---|
| 533 | i = Plugin() |
---|
| 534 | |
---|
| 535 | |
---|
| 536 | |
---|
| 537 | |
---|