source: sasview/sansmodels/src/setup.py @ be3b661

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Last change on this file since be3b661 was ca153ba, checked in by Jae Cho <jhjcho@…>, 13 years ago

added new model in the list
  • Property mode set to 100644
File size: 12.0 KB
Line 
1"""
2 Installation script for SANS models
3
4  - To compile and install:
5      python setup.py install
6  - To create distribution:
7      python setup.py bdist_wininst
8  - To create odb files:
9      python setup.py odb
10
11"""
12import sys
13import os
14   
15from numpy.distutils.misc_util import get_numpy_include_dirs
16numpy_incl_path = os.path.join(get_numpy_include_dirs()[0], "numpy")
17
18def createODBcontent(class_name):
19    """
20        Return the content of the Pyre odb file for a given class
21        @param class_name: Name of the class to write an odb file for [string]
22        @return: content of the file [string]
23    """
24    content  = "\"\"\"\n"
25    content += "  Facility for SANS model\n\n"
26    content += "  WARNING: THIS FILE WAS AUTOGENERATED AT INSTALL TIME\n"
27    content += "           DO NOT MODIFY\n\n"
28    content += "  This code was written as part of the DANSE project\n"
29    content += "  http://danse.us/trac/sans/\n"
30    content += "  @copyright 2007:"
31    content += "  SANS/DANSE Group (University of Tennessee), for the DANSE project\n\n"
32    content += "\"\"\"\n"
33    content += "def model():\n"
34    content += "    from ScatteringIntensityFactory import ScatteringIntensityFactory\n"
35    content += "    from sans.models.%s import %s\n" % (class_name, class_name)
36    content += "    return ScatteringIntensityFactory(%s)('%s')\n"\
37                 % (class_name, class_name)
38
39    return content
40
41def createODBfiles():
42    """
43       Create odb files for all available models
44    """
45    from sans.models.ModelFactory import ModelFactory
46   
47    class_list = ModelFactory().getAllModels()
48    for name in class_list:
49        odb = open("sans/models/pyre/%s.odb" % name, 'w')
50        odb.write(createODBcontent(name))
51        odb.close()
52        print "sans/models/pyre/%s.odb created" % name
53       
54#
55# Proceed with installation
56#
57
58# First, create the odb files
59if len(sys.argv) > 1 and sys.argv[1].lower() == 'odb':
60    print "Creating odb files"
61    try:
62        createODBfiles()
63    except:   
64        print "ERROR: could not create odb files"
65        print sys.exc_value
66    sys.exit()
67
68# Then build and install the modules
69from distutils.core import Extension, setup
70#from setuptools import setup#, find_packages
71
72# Build the module name
73srcdir  = "sans/models/c_extensions"
74igordir = "libigor"
75
76print "Installing SANS models"
77
78
79dist = setup(
80    name="models",
81    version = "0.9.1",
82    description = "Python module for SANS scattering models",
83    author = "SANS/DANSE",
84    author_email = "sansdanse@gmail.gov",
85    url = "http://danse.us/trac/sans",
86   
87    # Place this module under the sans package
88    #ext_package = "sans",
89   
90    # Use the pure python modules
91    package_dir = {"sans_extension":"sans/models/c_extensions",
92                   "sans.models.media":"media"},
93    package_data={'sans.models.media': ['*.gif','*.jpg','*.png','*.html']},
94    packages = ["sans","sans.models","sans.models.test",
95                "sans_extension","sans.models.pyre",
96                "sans.models.media"],
97   
98    ext_modules = [ Extension("sans_extension.c_models",
99     sources = [
100        "sans/models/c_models/c_models.cpp",
101        #srcdir+"/CSphereModel.c",
102        #srcdir+"/sphere.c",
103        "sans/models/c_models/CSphereModel.cpp",
104        "sans/models/c_models/CPearlNecklaceModel.cpp",
105        "sans/models/c_models/pearlnecklace.cpp",
106        srcdir+"/pearlnecklace.c",
107        "sans/models/c_models/COnionModel.cpp",
108        "sans/models/c_models/onion.cpp",
109        srcdir+"/onion.c",
110        "sans/models/c_models/CReflModel.cpp",
111        "sans/models/c_models/refl.cpp",
112        srcdir+"/refl.c",
113        "sans/models/c_models/CReflAdvModel.cpp",
114        "sans/models/c_models/refl_adv.cpp",
115        srcdir+"/refl_adv.c",
116        #srcdir+"/SquareWell.c",
117        "sans/models/c_models/CSquareWellStructure.cpp", 
118        "sans/models/c_models/SquareWell.cpp", 
119        #srcdir+"/StickyHS.c",         
120        "sans/models/c_models/CStickyHSStructure.cpp", 
121        "sans/models/c_models/StickyHS.cpp",             
122        "sans/models/c_models/CHardsphereStructure.cpp", 
123        "sans/models/c_models/Hardsphere.cpp",   
124        #srcdir+"/DiamCyl.c",         
125        "sans/models/c_models/CDiamCylFunc.cpp", 
126        "sans/models/c_models/DiamCyl.cpp",   
127        #srcdir+"/DiamEllip.c",         
128        "sans/models/c_models/CDiamEllipFunc.cpp", 
129        "sans/models/c_models/DiamEllip.cpp",     
130        #srcdir+"/HayterMSA.c",         
131        "sans/models/c_models/CHayterMSAStructure.cpp", 
132        "sans/models/c_models/HayterMSA.cpp",             
133        "sans/models/c_models/sphere.cpp",
134        srcdir+"/fuzzysphere.c",
135        "sans/models/c_models/CFuzzySphereModel.cpp",
136        "sans/models/c_models/fuzzysphere.cpp",
137        #srcdir+"/CCylinderModel.c",
138        "sans/models/c_models/CCylinderModel.cpp",
139        "sans/models/c_models/cylinder.cpp",
140        "sans/models/c_models/parameters.cpp",
141        "sans/models/c_models/dispersion_visitor.cpp",
142        srcdir+"/cylinder.c",
143        #srcdir+"/CParallelepiped.c",
144        "sans/models/c_models/CParallelepipedModel.cpp",
145        "sans/models/c_models/parallelepiped.cpp",
146        srcdir+"/parallelepiped.c",
147        "sans/models/c_models/CCSParallelepipedModel.cpp",
148        "sans/models/c_models/csparallelepiped.cpp",
149        srcdir+"/csparallelepiped.c",
150        #srcdir+"/CCoreShellCylinderModel.c",
151        "sans/models/c_models/CCoreShellCylinderModel.cpp",
152        "sans/models/c_models/coreshellcylinder.cpp",
153        srcdir+"/core_shell_cylinder.c",
154        #srcdir+"/CHollowCylinderModel.c",
155        "sans/models/c_models/CHollowCylinderModel.cpp",
156        "sans/models/c_models/hollowcylinder.cpp",
157        srcdir+"/hollow_cylinder.c",
158        #srcdir+"/CCoreShellModel.c",
159        #srcdir+"/core_shell.c",
160        "sans/models/c_models/CCoreShellModel.cpp",
161        "sans/models/c_models/coreshellsphere.cpp",
162        #srcdir+"/CEllipsoidModel.c",
163        "sans/models/c_models/CEllipsoidModel.cpp",
164        "sans/models/c_models/ellipsoid.cpp",       
165        srcdir+"/ellipsoid.c",
166        "sans/models/c_models/CCoreFourShellModel.cpp",
167        "sans/models/c_models/corefourshell.cpp",
168        #srcdir+"/corefourshell.c",
169        #srcdir+"/CEllipticalCylinderModel.c",
170        "sans/models/c_models/CEllipticalCylinderModel.cpp",
171        "sans/models/c_models/ellipticalcylinder.cpp",               
172        srcdir+"/elliptical_cylinder.c",
173        #srcdir+"/CTriaxialEllipsoidModel.c",
174        "sans/models/c_models/CTriaxialEllipsoidModel.cpp",
175        "sans/models/c_models/triaxialellipsoid.cpp",               
176        srcdir+"/triaxial_ellipsoid.c",
177        #srcdir+"/CFlexibleCylinderModel.c",
178        "sans/models/c_models/CFlexibleCylinderModel.cpp",
179        "sans/models/c_models/flexiblecylinder.cpp",               
180        srcdir+"/flexible_cylinder.c",
181        "sans/models/c_models/CFlexCylEllipXModel.cpp",
182        "sans/models/c_models/flexcyl_ellipX.cpp",         
183        srcdir+"/flexcyl_ellipX.c",
184        "sans/models/c_models/CBarBellModel.cpp",
185        "sans/models/c_models/barbell.cpp",         
186        srcdir+"/barbell.c",
187        "sans/models/c_models/CCappedCylinderModel.cpp",
188        "sans/models/c_models/capcyl.cpp",         
189        srcdir+"/capcyl.c",
190        #srcdir+"/CStakedDisksModel.c",
191        "sans/models/c_models/CSCCrystalModel.cpp",
192        "sans/models/c_models/sc.cpp",               
193        srcdir+"/sc.c",
194        "sans/models/c_models/CFCCrystalModel.cpp",
195        "sans/models/c_models/fcc.cpp",               
196        srcdir+"/fcc.c",
197        "sans/models/c_models/CBCCrystalModel.cpp",
198        "sans/models/c_models/bcc.cpp",               
199        srcdir+"/bcc.c",
200        "sans/models/c_models/CStackedDisksModel.cpp",
201        "sans/models/c_models/stackeddisks.cpp",               
202        srcdir+"/stacked_disks.c",
203        #srcdir+"/CLamellarModel.c",
204        "sans/models/c_models/CLamellarModel.cpp",
205        "sans/models/c_models/lamellar.cpp",               
206        srcdir+"/lamellar.c",
207        #srcdir+"/CLamellarFFHGModel.c",
208        "sans/models/c_models/CLamellarFFHGModel.cpp",
209        "sans/models/c_models/lamellarFF_HG.cpp",               
210        #srcdir+"/lamellarFF_HG.c",
211        #srcdir+"/CLamellarPSModel.c",
212        "sans/models/c_models/CLamellarPSModel.cpp",
213        "sans/models/c_models/lamellarPS.cpp",               
214        srcdir+"/lamellarPS.c",
215        #srcdir+"/CLamellarPSHGModel.c",
216        "sans/models/c_models/CLamellarPSHGModel.cpp",
217        "sans/models/c_models/lamellarPS_HG.cpp",               
218        #srcdir+"/lamellarPS_HG.c",
219        "sans/models/c_models/CLamellarPCrystalModel.cpp",
220        "sans/models/c_models/lamellarPC.cpp",               
221        #srcdir+"/lamellarPC.c",
222        #srcdir+"/COblateModel.c",
223        "sans/models/c_models/CCoreShellEllipsoidModel.cpp",
224        "sans/models/c_models/spheroid.cpp",   
225        srcdir+"/spheroid.c",             
226        #srcdir+"/COblateModel.c",
227        #"sans/models/c_models/COblateModel.cpp",
228        #"sans/models/c_models/oblate.cpp",               
229        #srcdir+"/oblate.c",
230        #srcdir+"/CProlateModel.c",
231        #"sans/models/c_models/CProlateModel.cpp",
232        #"sans/models/c_models/prolate.cpp",               
233        #srcdir+"/prolate.c",
234        #srcdir+"/CMultishellModel.c",
235        "sans/models/c_models/CMultiShellModel.cpp",
236        "sans/models/c_models/multishell.cpp",               
237        #srcdir+"/multishell.c",
238        "sans/models/c_models/CSphereSLDModel.cpp",
239        "sans/models/c_models/spheresld.cpp",               
240        srcdir+"/spheresld.c",
241        #srcdir+"/CVesicleModel.c",
242        "sans/models/c_models/CVesicleModel.cpp",
243        "sans/models/c_models/vesicle.cpp",               
244        #srcdir+"/vesicle.c",
245        #srcdir+"/CBinaryHSModel.c",
246        "sans/models/c_models/CBinaryHSModel.cpp",
247        "sans/models/c_models/binaryHS.cpp",               
248        "sans/models/c_models/CPoly_GaussCoil.cpp",
249        "sans/models/c_models/polygausscoil.cpp",   
250        srcdir+"/rpa.c",             
251        "sans/models/c_models/CRPAModel.cpp",
252        "sans/models/c_models/rpa.cpp", 
253        #srcdir+"/fractal.c",             
254        "sans/models/c_models/CFractalModel.cpp",
255        "sans/models/c_models/fractal.cpp", 
256        srcdir+"/sld_cal.c",         
257        "sans/models/c_models/CSLDCalFunc.cpp", 
258        "sans/models/c_models/sld_cal.cpp", 
259        #gammainc function need to imported from somewhere 
260        #srcdir+"/polyexclvol.c",             
261        #"sans/models/c_models/CPolymerExclVolModel.cpp",
262        #"sans/models/c_models/polyexclvol.cpp", 
263        srcdir+"/libmultifunc/librefl.c",
264        srcdir+"/libmultifunc/libfunc.c",
265        #srcdir+"/polygausscoil.c",             
266        #srcdir+"/binaryHS.c",
267        srcdir+"/disperser.c",
268        igordir+"/libCylinder.c",
269        igordir+"/libStructureFactor.c",
270        igordir+"/libSphere.c",
271        igordir+"/libTwoPhase.c",
272        srcdir+"/gaussian.c",
273        srcdir+"/CGaussian.c",
274        srcdir+"/logNormal.c",
275        srcdir+"/CLogNormal.c",
276        srcdir+"/schulz.c",
277        srcdir+"/CSchulz.c",
278        srcdir+"/lorentzian.c",
279        srcdir+"/CLorentzian.c"
280            ],
281        include_dirs=[igordir,srcdir,"sans/models/c_models",numpy_incl_path]),       
282        # Smearer extension
283        Extension("sans_extension.smearer",
284                   sources = [
285        "sans/models/c_smearer/smearer_module.cpp",
286        "sans/models/c_smearer/smearer.cpp",
287        ],
288        include_dirs=["sans/models/c_smearer",numpy_incl_path]),
289        Extension("sans_extension.smearer2d_helper",
290                  sources = [
291        "sans/models/c_smearer/smearer2d_helper_module.cpp",
292        "sans/models/c_smearer/smearer2d_helper.cpp",
293        ],
294        include_dirs=["sans/models/c_smearer",numpy_incl_path]
295        )
296        ]
297    )
298       
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