[ae3ce4e] | 1 | """ |
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| 2 | Installation script for SANS models |
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| 3 | |
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| 4 | - To compile and install: |
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| 5 | python setup.py install |
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| 6 | - To create distribution: |
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| 7 | python setup.py bdist_wininst |
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| 8 | - To create odb files: |
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| 9 | python setup.py odb |
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| 10 | |
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| 11 | """ |
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[f88624d] | 12 | import sys |
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| 13 | import os |
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[ca3072fb] | 14 | if len(sys.argv) == 1: |
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| 15 | sys.argv.append('install') |
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[87615a48] | 16 | |
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[b72b595] | 17 | from numpy.distutils.misc_util import get_numpy_include_dirs |
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[6c13861] | 18 | numpy_incl_path = os.path.join(get_numpy_include_dirs()[0], "numpy") |
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[b72b595] | 19 | |
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[ae3ce4e] | 20 | def createODBcontent(class_name): |
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| 21 | """ |
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| 22 | Return the content of the Pyre odb file for a given class |
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| 23 | @param class_name: Name of the class to write an odb file for [string] |
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| 24 | @return: content of the file [string] |
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| 25 | """ |
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| 26 | content = "\"\"\"\n" |
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| 27 | content += " Facility for SANS model\n\n" |
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| 28 | content += " WARNING: THIS FILE WAS AUTOGENERATED AT INSTALL TIME\n" |
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| 29 | content += " DO NOT MODIFY\n\n" |
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| 30 | content += " This code was written as part of the DANSE project\n" |
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| 31 | content += " http://danse.us/trac/sans/\n" |
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| 32 | content += " @copyright 2007:" |
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[25579e8] | 33 | content += " SANS/DANSE Group (University of Tennessee), for the DANSE project\n\n" |
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[ae3ce4e] | 34 | content += "\"\"\"\n" |
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| 35 | content += "def model():\n" |
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| 36 | content += " from ScatteringIntensityFactory import ScatteringIntensityFactory\n" |
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| 37 | content += " from sans.models.%s import %s\n" % (class_name, class_name) |
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| 38 | content += " return ScatteringIntensityFactory(%s)('%s')\n"\ |
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| 39 | % (class_name, class_name) |
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| 40 | |
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| 41 | return content |
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| 42 | |
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| 43 | def createODBfiles(): |
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| 44 | """ |
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| 45 | Create odb files for all available models |
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| 46 | """ |
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| 47 | from sans.models.ModelFactory import ModelFactory |
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| 48 | |
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| 49 | class_list = ModelFactory().getAllModels() |
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| 50 | for name in class_list: |
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| 51 | odb = open("sans/models/pyre/%s.odb" % name, 'w') |
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| 52 | odb.write(createODBcontent(name)) |
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| 53 | odb.close() |
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| 54 | print "sans/models/pyre/%s.odb created" % name |
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| 55 | |
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| 56 | # |
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| 57 | # Proceed with installation |
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| 58 | # |
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| 59 | |
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| 60 | # First, create the odb files |
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| 61 | if len(sys.argv) > 1 and sys.argv[1].lower() == 'odb': |
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| 62 | print "Creating odb files" |
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| 63 | try: |
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| 64 | createODBfiles() |
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| 65 | except: |
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| 66 | print "ERROR: could not create odb files" |
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| 67 | print sys.exc_value |
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| 68 | sys.exit() |
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| 69 | |
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| 70 | # Then build and install the modules |
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[87615a48] | 71 | from distutils.core import Extension, setup |
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| 72 | #from setuptools import setup#, find_packages |
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[ae3ce4e] | 73 | |
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| 74 | # Build the module name |
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| 75 | srcdir = "sans/models/c_extensions" |
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[ca3072fb] | 76 | igordir = "sans/models/libigor" |
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[ae3ce4e] | 77 | |
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| 78 | print "Installing SANS models" |
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| 79 | |
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| 80 | |
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[87615a48] | 81 | dist = setup( |
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[ca3072fb] | 82 | name="sans.models", |
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[87615a48] | 83 | version = "0.9.1", |
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[ae3ce4e] | 84 | description = "Python module for SANS scattering models", |
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[87615a48] | 85 | author = "SANS/DANSE", |
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| 86 | author_email = "sansdanse@gmail.gov", |
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[ae3ce4e] | 87 | url = "http://danse.us/trac/sans", |
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| 88 | |
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| 89 | # Place this module under the sans package |
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| 90 | #ext_package = "sans", |
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| 91 | |
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| 92 | # Use the pure python modules |
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[e715e4f] | 93 | package_dir = {"sans_extension":"sans/models/c_extensions", |
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[ca3072fb] | 94 | "sans.models.media":"sans/models/media"}, |
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[87615a48] | 95 | package_data={'sans.models.media': ['*.gif','*.jpg','*.png','*.html']}, |
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[ae3ce4e] | 96 | packages = ["sans","sans.models","sans.models.test", |
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[e715e4f] | 97 | "sans_extension","sans.models.pyre", |
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| 98 | "sans.models.media"], |
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[ae3ce4e] | 99 | |
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| 100 | ext_modules = [ Extension("sans_extension.c_models", |
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| 101 | sources = [ |
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[8809e48] | 102 | "sans/models/c_models/c_models.cpp", |
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[0f5bc9f] | 103 | #srcdir+"/CSphereModel.c", |
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| 104 | #srcdir+"/sphere.c", |
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| 105 | "sans/models/c_models/CSphereModel.cpp", |
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[ca153ba] | 106 | "sans/models/c_models/CPearlNecklaceModel.cpp", |
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| 107 | "sans/models/c_models/pearlnecklace.cpp", |
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| 108 | srcdir+"/pearlnecklace.c", |
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[5d57267] | 109 | "sans/models/c_models/COnionModel.cpp", |
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| 110 | "sans/models/c_models/onion.cpp", |
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| 111 | srcdir+"/onion.c", |
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[35aface] | 112 | "sans/models/c_models/CReflModel.cpp", |
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| 113 | "sans/models/c_models/refl.cpp", |
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| 114 | srcdir+"/refl.c", |
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[3be060d] | 115 | "sans/models/c_models/CReflAdvModel.cpp", |
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| 116 | "sans/models/c_models/refl_adv.cpp", |
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| 117 | srcdir+"/refl_adv.c", |
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[8240eab] | 118 | #srcdir+"/SquareWell.c", |
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[25579e8] | 119 | "sans/models/c_models/CSquareWellStructure.cpp", |
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| 120 | "sans/models/c_models/SquareWell.cpp", |
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[8240eab] | 121 | #srcdir+"/StickyHS.c", |
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[25579e8] | 122 | "sans/models/c_models/CStickyHSStructure.cpp", |
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[8240eab] | 123 | "sans/models/c_models/StickyHS.cpp", |
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[25579e8] | 124 | "sans/models/c_models/CHardsphereStructure.cpp", |
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[5be36bb] | 125 | "sans/models/c_models/Hardsphere.cpp", |
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[8240eab] | 126 | #srcdir+"/DiamCyl.c", |
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[93d04e5] | 127 | "sans/models/c_models/CDiamCylFunc.cpp", |
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| 128 | "sans/models/c_models/DiamCyl.cpp", |
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[8240eab] | 129 | #srcdir+"/DiamEllip.c", |
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[93d04e5] | 130 | "sans/models/c_models/CDiamEllipFunc.cpp", |
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[5be36bb] | 131 | "sans/models/c_models/DiamEllip.cpp", |
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[8240eab] | 132 | #srcdir+"/HayterMSA.c", |
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[25579e8] | 133 | "sans/models/c_models/CHayterMSAStructure.cpp", |
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[93d04e5] | 134 | "sans/models/c_models/HayterMSA.cpp", |
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[0f5bc9f] | 135 | "sans/models/c_models/sphere.cpp", |
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[89c0919] | 136 | srcdir+"/fuzzysphere.c", |
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| 137 | "sans/models/c_models/CFuzzySphereModel.cpp", |
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| 138 | "sans/models/c_models/fuzzysphere.cpp", |
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[af03ddd] | 139 | #srcdir+"/CCylinderModel.c", |
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| 140 | "sans/models/c_models/CCylinderModel.cpp", |
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| 141 | "sans/models/c_models/cylinder.cpp", |
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| 142 | "sans/models/c_models/parameters.cpp", |
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| 143 | "sans/models/c_models/dispersion_visitor.cpp", |
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[ae3ce4e] | 144 | srcdir+"/cylinder.c", |
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[f41b4c3] | 145 | #srcdir+"/CParallelepiped.c", |
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| 146 | "sans/models/c_models/CParallelepipedModel.cpp", |
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| 147 | "sans/models/c_models/parallelepiped.cpp", |
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| 148 | srcdir+"/parallelepiped.c", |
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[2e862a0] | 149 | "sans/models/c_models/CCSParallelepipedModel.cpp", |
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| 150 | "sans/models/c_models/csparallelepiped.cpp", |
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| 151 | srcdir+"/csparallelepiped.c", |
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[0f5bc9f] | 152 | #srcdir+"/CCoreShellCylinderModel.c", |
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| 153 | "sans/models/c_models/CCoreShellCylinderModel.cpp", |
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| 154 | "sans/models/c_models/coreshellcylinder.cpp", |
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[ae3ce4e] | 155 | srcdir+"/core_shell_cylinder.c", |
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[27fea3f] | 156 | #srcdir+"/CHollowCylinderModel.c", |
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| 157 | "sans/models/c_models/CHollowCylinderModel.cpp", |
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| 158 | "sans/models/c_models/hollowcylinder.cpp", |
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| 159 | srcdir+"/hollow_cylinder.c", |
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[0f5bc9f] | 160 | #srcdir+"/CCoreShellModel.c", |
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| 161 | #srcdir+"/core_shell.c", |
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| 162 | "sans/models/c_models/CCoreShellModel.cpp", |
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| 163 | "sans/models/c_models/coreshellsphere.cpp", |
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| 164 | #srcdir+"/CEllipsoidModel.c", |
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| 165 | "sans/models/c_models/CEllipsoidModel.cpp", |
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| 166 | "sans/models/c_models/ellipsoid.cpp", |
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[ae3ce4e] | 167 | srcdir+"/ellipsoid.c", |
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[89c0919] | 168 | "sans/models/c_models/CCoreFourShellModel.cpp", |
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| 169 | "sans/models/c_models/corefourshell.cpp", |
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[2399b2a] | 170 | #srcdir+"/corefourshell.c", |
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[0f5bc9f] | 171 | #srcdir+"/CEllipticalCylinderModel.c", |
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| 172 | "sans/models/c_models/CEllipticalCylinderModel.cpp", |
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| 173 | "sans/models/c_models/ellipticalcylinder.cpp", |
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[ae3ce4e] | 174 | srcdir+"/elliptical_cylinder.c", |
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[34c3020] | 175 | #srcdir+"/CTriaxialEllipsoidModel.c", |
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[5068697] | 176 | "sans/models/c_models/CTriaxialEllipsoidModel.cpp", |
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| 177 | "sans/models/c_models/triaxialellipsoid.cpp", |
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| 178 | srcdir+"/triaxial_ellipsoid.c", |
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| 179 | #srcdir+"/CFlexibleCylinderModel.c", |
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| 180 | "sans/models/c_models/CFlexibleCylinderModel.cpp", |
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| 181 | "sans/models/c_models/flexiblecylinder.cpp", |
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| 182 | srcdir+"/flexible_cylinder.c", |
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[89c0919] | 183 | "sans/models/c_models/CFlexCylEllipXModel.cpp", |
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| 184 | "sans/models/c_models/flexcyl_ellipX.cpp", |
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| 185 | srcdir+"/flexcyl_ellipX.c", |
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[20f00bed] | 186 | "sans/models/c_models/CBarBellModel.cpp", |
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| 187 | "sans/models/c_models/barbell.cpp", |
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| 188 | srcdir+"/barbell.c", |
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| 189 | "sans/models/c_models/CCappedCylinderModel.cpp", |
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| 190 | "sans/models/c_models/capcyl.cpp", |
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| 191 | srcdir+"/capcyl.c", |
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[5068697] | 192 | #srcdir+"/CStakedDisksModel.c", |
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[d2d815d] | 193 | "sans/models/c_models/CSCCrystalModel.cpp", |
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| 194 | "sans/models/c_models/sc.cpp", |
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| 195 | srcdir+"/sc.c", |
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| 196 | "sans/models/c_models/CFCCrystalModel.cpp", |
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| 197 | "sans/models/c_models/fcc.cpp", |
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| 198 | srcdir+"/fcc.c", |
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| 199 | "sans/models/c_models/CBCCrystalModel.cpp", |
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| 200 | "sans/models/c_models/bcc.cpp", |
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| 201 | srcdir+"/bcc.c", |
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[5068697] | 202 | "sans/models/c_models/CStackedDisksModel.cpp", |
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| 203 | "sans/models/c_models/stackeddisks.cpp", |
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| 204 | srcdir+"/stacked_disks.c", |
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[34c3020] | 205 | #srcdir+"/CLamellarModel.c", |
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| 206 | "sans/models/c_models/CLamellarModel.cpp", |
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| 207 | "sans/models/c_models/lamellar.cpp", |
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| 208 | srcdir+"/lamellar.c", |
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| 209 | #srcdir+"/CLamellarFFHGModel.c", |
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| 210 | "sans/models/c_models/CLamellarFFHGModel.cpp", |
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| 211 | "sans/models/c_models/lamellarFF_HG.cpp", |
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[2399b2a] | 212 | #srcdir+"/lamellarFF_HG.c", |
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[27a0771] | 213 | #srcdir+"/CLamellarPSModel.c", |
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| 214 | "sans/models/c_models/CLamellarPSModel.cpp", |
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| 215 | "sans/models/c_models/lamellarPS.cpp", |
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| 216 | srcdir+"/lamellarPS.c", |
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| 217 | #srcdir+"/CLamellarPSHGModel.c", |
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| 218 | "sans/models/c_models/CLamellarPSHGModel.cpp", |
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| 219 | "sans/models/c_models/lamellarPS_HG.cpp", |
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[2399b2a] | 220 | #srcdir+"/lamellarPS_HG.c", |
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[20f00bed] | 221 | "sans/models/c_models/CLamellarPCrystalModel.cpp", |
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| 222 | "sans/models/c_models/lamellarPC.cpp", |
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[2399b2a] | 223 | #srcdir+"/lamellarPC.c", |
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[27a0771] | 224 | #srcdir+"/COblateModel.c", |
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[8e36cdd] | 225 | "sans/models/c_models/CCoreShellEllipsoidModel.cpp", |
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[975ec8e] | 226 | "sans/models/c_models/spheroid.cpp", |
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| 227 | srcdir+"/spheroid.c", |
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| 228 | #srcdir+"/COblateModel.c", |
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[5be36bb] | 229 | #"sans/models/c_models/COblateModel.cpp", |
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| 230 | #"sans/models/c_models/oblate.cpp", |
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| 231 | #srcdir+"/oblate.c", |
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[27a0771] | 232 | #srcdir+"/CProlateModel.c", |
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[5be36bb] | 233 | #"sans/models/c_models/CProlateModel.cpp", |
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| 234 | #"sans/models/c_models/prolate.cpp", |
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| 235 | #srcdir+"/prolate.c", |
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[3d25331f] | 236 | #srcdir+"/CMultishellModel.c", |
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[0211d67] | 237 | "sans/models/c_models/CMultiShellModel.cpp", |
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[3d25331f] | 238 | "sans/models/c_models/multishell.cpp", |
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[2399b2a] | 239 | #srcdir+"/multishell.c", |
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[96d19c6] | 240 | "sans/models/c_models/CSphereSLDModel.cpp", |
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| 241 | "sans/models/c_models/spheresld.cpp", |
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| 242 | srcdir+"/spheresld.c", |
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[3d25331f] | 243 | #srcdir+"/CVesicleModel.c", |
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| 244 | "sans/models/c_models/CVesicleModel.cpp", |
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| 245 | "sans/models/c_models/vesicle.cpp", |
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[2399b2a] | 246 | #srcdir+"/vesicle.c", |
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[3d25331f] | 247 | #srcdir+"/CBinaryHSModel.c", |
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| 248 | "sans/models/c_models/CBinaryHSModel.cpp", |
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| 249 | "sans/models/c_models/binaryHS.cpp", |
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[89c0919] | 250 | "sans/models/c_models/CPoly_GaussCoil.cpp", |
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| 251 | "sans/models/c_models/polygausscoil.cpp", |
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[35aface] | 252 | srcdir+"/rpa.c", |
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| 253 | "sans/models/c_models/CRPAModel.cpp", |
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| 254 | "sans/models/c_models/rpa.cpp", |
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[2399b2a] | 255 | #srcdir+"/fractal.c", |
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[89c0919] | 256 | "sans/models/c_models/CFractalModel.cpp", |
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| 257 | "sans/models/c_models/fractal.cpp", |
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[96d19c6] | 258 | srcdir+"/sld_cal.c", |
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| 259 | "sans/models/c_models/CSLDCalFunc.cpp", |
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| 260 | "sans/models/c_models/sld_cal.cpp", |
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[89c0919] | 261 | #gammainc function need to imported from somewhere |
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| 262 | #srcdir+"/polyexclvol.c", |
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| 263 | #"sans/models/c_models/CPolymerExclVolModel.cpp", |
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| 264 | #"sans/models/c_models/polyexclvol.cpp", |
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[96d19c6] | 265 | srcdir+"/libmultifunc/librefl.c", |
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[ca153ba] | 266 | srcdir+"/libmultifunc/libfunc.c", |
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[8240eab] | 267 | #srcdir+"/polygausscoil.c", |
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[2399b2a] | 268 | #srcdir+"/binaryHS.c", |
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[59b9b675] | 269 | srcdir+"/disperser.c", |
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[ae3ce4e] | 270 | igordir+"/libCylinder.c", |
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[25579e8] | 271 | igordir+"/libStructureFactor.c", |
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[ae3ce4e] | 272 | igordir+"/libSphere.c", |
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[89c0919] | 273 | igordir+"/libTwoPhase.c", |
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[59b9b675] | 274 | srcdir+"/gaussian.c", |
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| 275 | srcdir+"/CGaussian.c", |
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| 276 | srcdir+"/logNormal.c", |
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| 277 | srcdir+"/CLogNormal.c", |
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| 278 | srcdir+"/schulz.c", |
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| 279 | srcdir+"/CSchulz.c", |
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| 280 | srcdir+"/lorentzian.c", |
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| 281 | srcdir+"/CLorentzian.c" |
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[ae3ce4e] | 282 | ], |
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[87615a48] | 283 | include_dirs=[igordir,srcdir,"sans/models/c_models",numpy_incl_path]), |
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| 284 | # Smearer extension |
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| 285 | Extension("sans_extension.smearer", |
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[642b259] | 286 | sources = [ |
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| 287 | "sans/models/c_smearer/smearer_module.cpp", |
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| 288 | "sans/models/c_smearer/smearer.cpp", |
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| 289 | ], |
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[87615a48] | 290 | include_dirs=["sans/models/c_smearer",numpy_incl_path]), |
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| 291 | Extension("sans_extension.smearer2d_helper", |
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| 292 | sources = [ |
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| 293 | "sans/models/c_smearer/smearer2d_helper_module.cpp", |
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| 294 | "sans/models/c_smearer/smearer2d_helper.cpp", |
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| 295 | ], |
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| 296 | include_dirs=["sans/models/c_smearer",numpy_incl_path] |
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| 297 | ) |
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| 298 | ] |
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| 299 | ) |
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[b72b595] | 300 | |
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