[3d25331f] | 1 | /** |
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| 2 | This software was developed by the University of Tennessee as part of the |
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| 3 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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| 4 | project funded by the US National Science Foundation. |
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| 5 | |
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| 6 | If you use DANSE applications to do scientific research that leads to |
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| 7 | publication, we ask that you acknowledge the use of the software with the |
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| 8 | following sentence: |
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| 9 | |
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| 10 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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| 11 | |
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| 12 | copyright 2008, University of Tennessee |
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| 13 | */ |
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| 14 | |
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| 15 | /** CVesicleModel |
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| 16 | * |
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| 17 | * C extension |
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| 18 | * |
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| 19 | * WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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| 20 | * DO NOT MODIFY THIS FILE, MODIFY vesicle.h |
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| 21 | * AND RE-RUN THE GENERATOR SCRIPT |
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| 22 | * |
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| 23 | */ |
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[a8d6888] | 24 | #define NO_IMPORT_ARRAY |
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| 25 | #define PY_ARRAY_UNIQUE_SYMBOL PyArray_API_sans |
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[3d25331f] | 26 | |
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| 27 | extern "C" { |
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| 28 | #include <Python.h> |
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[a8d6888] | 29 | #include <arrayobject.h> |
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[3d25331f] | 30 | #include "structmember.h" |
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| 31 | #include <stdio.h> |
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| 32 | #include <stdlib.h> |
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| 33 | #include <math.h> |
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| 34 | #include <time.h> |
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| 35 | #include "vesicle.h" |
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| 36 | } |
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| 37 | |
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| 38 | #include "models.hh" |
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| 39 | #include "dispersion_visitor.hh" |
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| 40 | |
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| 41 | /// Error object for raised exceptions |
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| 42 | static PyObject * CVesicleModelError = NULL; |
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| 43 | |
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| 44 | |
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| 45 | // Class definition |
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| 46 | typedef struct { |
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| 47 | PyObject_HEAD |
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| 48 | /// Parameters |
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| 49 | PyObject * params; |
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| 50 | /// Dispersion parameters |
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| 51 | PyObject * dispersion; |
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| 52 | /// Underlying model object |
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| 53 | VesicleModel * model; |
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| 54 | /// Log for unit testing |
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| 55 | PyObject * log; |
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| 56 | } CVesicleModel; |
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| 57 | |
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| 58 | |
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| 59 | static void |
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| 60 | CVesicleModel_dealloc(CVesicleModel* self) |
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| 61 | { |
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[71e2de7] | 62 | Py_DECREF(self->params); |
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| 63 | Py_DECREF(self->dispersion); |
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| 64 | Py_DECREF(self->log); |
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| 65 | delete self->model; |
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[3d25331f] | 66 | self->ob_type->tp_free((PyObject*)self); |
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[b1c3295] | 67 | |
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[3d25331f] | 68 | |
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| 69 | } |
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| 70 | |
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| 71 | static PyObject * |
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| 72 | CVesicleModel_new(PyTypeObject *type, PyObject *args, PyObject *kwds) |
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| 73 | { |
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| 74 | CVesicleModel *self; |
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| 75 | |
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| 76 | self = (CVesicleModel *)type->tp_alloc(type, 0); |
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| 77 | |
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| 78 | return (PyObject *)self; |
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| 79 | } |
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| 80 | |
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| 81 | static int |
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| 82 | CVesicleModel_init(CVesicleModel *self, PyObject *args, PyObject *kwds) |
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| 83 | { |
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| 84 | if (self != NULL) { |
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| 85 | |
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| 86 | // Create parameters |
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| 87 | self->params = PyDict_New(); |
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| 88 | self->dispersion = PyDict_New(); |
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| 89 | self->model = new VesicleModel(); |
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| 90 | |
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[b1c3295] | 91 | // Initialize parameter dictionary |
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| 92 | PyDict_SetItemString(self->params,"core_sld",Py_BuildValue("d",0.000006360000)); |
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| 93 | PyDict_SetItemString(self->params,"thickness",Py_BuildValue("d",30.000000000000)); |
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| 94 | PyDict_SetItemString(self->params,"scale",Py_BuildValue("d",1.000000000000)); |
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| 95 | PyDict_SetItemString(self->params,"radius",Py_BuildValue("d",100.000000000000)); |
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| 96 | PyDict_SetItemString(self->params,"background",Py_BuildValue("d",0.000000000000)); |
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| 97 | PyDict_SetItemString(self->params,"shell_sld",Py_BuildValue("d",0.000000500000)); |
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| 98 | // Initialize dispersion / averaging parameter dict |
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| 99 | DispersionVisitor* visitor = new DispersionVisitor(); |
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| 100 | PyObject * disp_dict; |
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| 101 | disp_dict = PyDict_New(); |
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| 102 | self->model->radius.dispersion->accept_as_source(visitor, self->model->radius.dispersion, disp_dict); |
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| 103 | PyDict_SetItemString(self->dispersion, "radius", disp_dict); |
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| 104 | disp_dict = PyDict_New(); |
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| 105 | self->model->thickness.dispersion->accept_as_source(visitor, self->model->thickness.dispersion, disp_dict); |
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| 106 | PyDict_SetItemString(self->dispersion, "thickness", disp_dict); |
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| 107 | |
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[3d25331f] | 108 | |
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| 109 | |
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| 110 | // Create empty log |
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| 111 | self->log = PyDict_New(); |
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| 112 | |
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[b1c3295] | 113 | |
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[3d25331f] | 114 | |
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| 115 | } |
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| 116 | return 0; |
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| 117 | } |
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| 118 | |
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[b1c3295] | 119 | static char name_params[] = "params"; |
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| 120 | static char def_params[] = "Parameters"; |
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| 121 | static char name_dispersion[] = "dispersion"; |
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| 122 | static char def_dispersion[] = "Dispersion parameters"; |
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| 123 | static char name_log[] = "log"; |
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| 124 | static char def_log[] = "Log"; |
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| 125 | |
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[3d25331f] | 126 | static PyMemberDef CVesicleModel_members[] = { |
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[b1c3295] | 127 | {name_params, T_OBJECT, offsetof(CVesicleModel, params), 0, def_params}, |
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| 128 | {name_dispersion, T_OBJECT, offsetof(CVesicleModel, dispersion), 0, def_dispersion}, |
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| 129 | {name_log, T_OBJECT, offsetof(CVesicleModel, log), 0, def_log}, |
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[3d25331f] | 130 | {NULL} /* Sentinel */ |
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| 131 | }; |
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| 132 | |
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| 133 | /** Read double from PyObject |
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| 134 | @param p PyObject |
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| 135 | @return double |
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| 136 | */ |
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| 137 | double CVesicleModel_readDouble(PyObject *p) { |
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| 138 | if (PyFloat_Check(p)==1) { |
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| 139 | return (double)(((PyFloatObject *)(p))->ob_fval); |
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| 140 | } else if (PyInt_Check(p)==1) { |
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| 141 | return (double)(((PyIntObject *)(p))->ob_ival); |
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| 142 | } else if (PyLong_Check(p)==1) { |
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| 143 | return (double)PyLong_AsLong(p); |
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| 144 | } else { |
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| 145 | return 0.0; |
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| 146 | } |
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| 147 | } |
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[a8d6888] | 148 | /** |
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| 149 | * Function to call to evaluate model |
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| 150 | * @param args: input numpy array q[] |
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| 151 | * @return: numpy array object |
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| 152 | */ |
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| 153 | |
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| 154 | static PyObject *evaluateOneDim(VesicleModel* model, PyArrayObject *q){ |
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| 155 | PyArrayObject *result; |
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| 156 | |
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| 157 | // Check validity of array q , q must be of dimension 1, an array of double |
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| 158 | if (q->nd != 1 || q->descr->type_num != PyArray_DOUBLE) |
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| 159 | { |
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| 160 | //const char * message= "Invalid array: q->nd=%d,type_num=%d\n",q->nd,q->descr->type_num; |
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| 161 | //PyErr_SetString(PyExc_ValueError , message); |
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| 162 | return NULL; |
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| 163 | } |
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| 164 | result = (PyArrayObject *)PyArray_FromDims(q->nd, (int *)(q->dimensions), |
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| 165 | PyArray_DOUBLE); |
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| 166 | if (result == NULL) { |
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| 167 | const char * message= "Could not create result "; |
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| 168 | PyErr_SetString(PyExc_RuntimeError , message); |
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| 169 | return NULL; |
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| 170 | } |
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[0b082f3] | 171 | #pragma omp parallel for |
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[a8d6888] | 172 | for (int i = 0; i < q->dimensions[0]; i++){ |
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| 173 | double q_value = *(double *)(q->data + i*q->strides[0]); |
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| 174 | double *result_value = (double *)(result->data + i*result->strides[0]); |
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| 175 | *result_value =(*model)(q_value); |
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| 176 | } |
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| 177 | return PyArray_Return(result); |
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| 178 | } |
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[3d25331f] | 179 | |
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[a8d6888] | 180 | /** |
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| 181 | * Function to call to evaluate model |
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| 182 | * @param args: input numpy array [x[],y[]] |
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| 183 | * @return: numpy array object |
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| 184 | */ |
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| 185 | static PyObject * evaluateTwoDimXY( VesicleModel* model, |
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| 186 | PyArrayObject *x, PyArrayObject *y) |
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| 187 | { |
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| 188 | PyArrayObject *result; |
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[0b082f3] | 189 | int x_len, y_len, dims[1]; |
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[a8d6888] | 190 | //check validity of input vectors |
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[3080527] | 191 | if (x->nd != 1 || x->descr->type_num != PyArray_DOUBLE |
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| 192 | || y->nd != 1 || y->descr->type_num != PyArray_DOUBLE |
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| 193 | || y->dimensions[0] != x->dimensions[0]){ |
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[a8d6888] | 194 | const char * message= "evaluateTwoDimXY expect 2 numpy arrays"; |
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| 195 | PyErr_SetString(PyExc_ValueError , message); |
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| 196 | return NULL; |
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| 197 | } |
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| 198 | |
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| 199 | if (PyArray_Check(x) && PyArray_Check(y)) { |
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| 200 | |
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[3080527] | 201 | x_len = dims[0]= x->dimensions[0]; |
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[9ce41c6] | 202 | y_len = dims[0]= y->dimensions[0]; |
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[a8d6888] | 203 | |
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| 204 | // Make a new double matrix of same dims |
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[3080527] | 205 | result=(PyArrayObject *) PyArray_FromDims(1,dims,NPY_DOUBLE); |
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[a8d6888] | 206 | if (result == NULL){ |
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| 207 | const char * message= "Could not create result "; |
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| 208 | PyErr_SetString(PyExc_RuntimeError , message); |
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| 209 | return NULL; |
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| 210 | } |
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| 211 | |
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| 212 | /* Do the calculation. */ |
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[0b082f3] | 213 | #pragma omp parallel for |
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| 214 | for (int i=0; i< x_len; i++) { |
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[3080527] | 215 | double x_value = *(double *)(x->data + i*x->strides[0]); |
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| 216 | double y_value = *(double *)(y->data + i*y->strides[0]); |
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| 217 | double *result_value = (double *)(result->data + |
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| 218 | i*result->strides[0]); |
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| 219 | *result_value = (*model)(x_value, y_value); |
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| 220 | } |
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[a8d6888] | 221 | return PyArray_Return(result); |
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| 222 | |
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| 223 | }else{ |
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| 224 | PyErr_SetString(CVesicleModelError, |
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| 225 | "CVesicleModel.evaluateTwoDimXY couldn't run."); |
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| 226 | return NULL; |
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| 227 | } |
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| 228 | } |
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| 229 | /** |
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| 230 | * evalDistribution function evaluate a model function with input vector |
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| 231 | * @param args: input q as vector or [qx, qy] where qx, qy are vectors |
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| 232 | * |
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| 233 | */ |
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| 234 | static PyObject * evalDistribution(CVesicleModel *self, PyObject *args){ |
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| 235 | PyObject *qx, *qy; |
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| 236 | PyArrayObject * pars; |
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| 237 | int npars ,mpars; |
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| 238 | |
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| 239 | // Get parameters |
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| 240 | |
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[b1c3295] | 241 | // Reader parameter dictionary |
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| 242 | self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") ); |
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| 243 | self->model->thickness = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thickness") ); |
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| 244 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
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| 245 | self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") ); |
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| 246 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
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| 247 | self->model->shell_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "shell_sld") ); |
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| 248 | // Read in dispersion parameters |
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| 249 | PyObject* disp_dict; |
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| 250 | DispersionVisitor* visitor = new DispersionVisitor(); |
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| 251 | disp_dict = PyDict_GetItemString(self->dispersion, "radius"); |
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| 252 | self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict); |
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| 253 | disp_dict = PyDict_GetItemString(self->dispersion, "thickness"); |
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| 254 | self->model->thickness.dispersion->accept_as_destination(visitor, self->model->thickness.dispersion, disp_dict); |
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[a8d6888] | 255 | |
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| 256 | |
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| 257 | // Get input and determine whether we have to supply a 1D or 2D return value. |
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| 258 | if ( !PyArg_ParseTuple(args,"O",&pars) ) { |
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| 259 | PyErr_SetString(CVesicleModelError, |
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| 260 | "CVesicleModel.evalDistribution expects a q value."); |
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| 261 | return NULL; |
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| 262 | } |
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| 263 | // Check params |
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| 264 | |
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| 265 | if(PyArray_Check(pars)==1) { |
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| 266 | |
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| 267 | // Length of list should 1 or 2 |
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| 268 | npars = pars->nd; |
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| 269 | if(npars==1) { |
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| 270 | // input is a numpy array |
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| 271 | if (PyArray_Check(pars)) { |
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| 272 | return evaluateOneDim(self->model, (PyArrayObject*)pars); |
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| 273 | } |
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| 274 | }else{ |
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| 275 | PyErr_SetString(CVesicleModelError, |
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| 276 | "CVesicleModel.evalDistribution expect numpy array of one dimension."); |
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| 277 | return NULL; |
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| 278 | } |
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| 279 | }else if( PyList_Check(pars)==1) { |
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| 280 | // Length of list should be 2 for I(qx,qy) |
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| 281 | mpars = PyList_GET_SIZE(pars); |
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| 282 | if(mpars!=2) { |
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| 283 | PyErr_SetString(CVesicleModelError, |
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| 284 | "CVesicleModel.evalDistribution expects a list of dimension 2."); |
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| 285 | return NULL; |
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| 286 | } |
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| 287 | qx = PyList_GET_ITEM(pars,0); |
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| 288 | qy = PyList_GET_ITEM(pars,1); |
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| 289 | if (PyArray_Check(qx) && PyArray_Check(qy)) { |
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| 290 | return evaluateTwoDimXY(self->model, (PyArrayObject*)qx, |
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| 291 | (PyArrayObject*)qy); |
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| 292 | }else{ |
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| 293 | PyErr_SetString(CVesicleModelError, |
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| 294 | "CVesicleModel.evalDistribution expect 2 numpy arrays in list."); |
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| 295 | return NULL; |
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| 296 | } |
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| 297 | } |
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[e0a8a3c] | 298 | PyErr_SetString(CVesicleModelError, |
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| 299 | "CVesicleModel.evalDistribution couln't be run."); |
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| 300 | return NULL; |
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| 301 | |
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[a8d6888] | 302 | } |
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[3d25331f] | 303 | |
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| 304 | /** |
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| 305 | * Function to call to evaluate model |
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| 306 | * @param args: input q or [q,phi] |
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| 307 | * @return: function value |
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| 308 | */ |
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| 309 | static PyObject * run(CVesicleModel *self, PyObject *args) { |
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| 310 | double q_value, phi_value; |
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| 311 | PyObject* pars; |
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| 312 | int npars; |
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| 313 | |
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| 314 | // Get parameters |
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| 315 | |
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[b1c3295] | 316 | // Reader parameter dictionary |
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| 317 | self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") ); |
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| 318 | self->model->thickness = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thickness") ); |
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| 319 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
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| 320 | self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") ); |
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| 321 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
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| 322 | self->model->shell_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "shell_sld") ); |
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| 323 | // Read in dispersion parameters |
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| 324 | PyObject* disp_dict; |
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| 325 | DispersionVisitor* visitor = new DispersionVisitor(); |
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| 326 | disp_dict = PyDict_GetItemString(self->dispersion, "radius"); |
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| 327 | self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict); |
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| 328 | disp_dict = PyDict_GetItemString(self->dispersion, "thickness"); |
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| 329 | self->model->thickness.dispersion->accept_as_destination(visitor, self->model->thickness.dispersion, disp_dict); |
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[3d25331f] | 330 | |
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| 331 | |
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| 332 | // Get input and determine whether we have to supply a 1D or 2D return value. |
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| 333 | if ( !PyArg_ParseTuple(args,"O",&pars) ) { |
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| 334 | PyErr_SetString(CVesicleModelError, |
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| 335 | "CVesicleModel.run expects a q value."); |
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| 336 | return NULL; |
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| 337 | } |
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| 338 | |
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| 339 | // Check params |
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| 340 | if( PyList_Check(pars)==1) { |
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| 341 | |
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| 342 | // Length of list should be 2 for I(q,phi) |
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| 343 | npars = PyList_GET_SIZE(pars); |
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| 344 | if(npars!=2) { |
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| 345 | PyErr_SetString(CVesicleModelError, |
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| 346 | "CVesicleModel.run expects a double or a list of dimension 2."); |
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| 347 | return NULL; |
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| 348 | } |
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| 349 | // We have a vector q, get the q and phi values at which |
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| 350 | // to evaluate I(q,phi) |
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| 351 | q_value = CVesicleModel_readDouble(PyList_GET_ITEM(pars,0)); |
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| 352 | phi_value = CVesicleModel_readDouble(PyList_GET_ITEM(pars,1)); |
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| 353 | // Skip zero |
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| 354 | if (q_value==0) { |
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| 355 | return Py_BuildValue("d",0.0); |
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| 356 | } |
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| 357 | return Py_BuildValue("d",(*(self->model)).evaluate_rphi(q_value,phi_value)); |
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| 358 | |
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| 359 | } else { |
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| 360 | |
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| 361 | // We have a scalar q, we will evaluate I(q) |
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| 362 | q_value = CVesicleModel_readDouble(pars); |
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| 363 | |
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| 364 | return Py_BuildValue("d",(*(self->model))(q_value)); |
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| 365 | } |
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| 366 | } |
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[5eb9154] | 367 | /** |
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| 368 | * Function to call to calculate_ER |
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| 369 | * @return: effective radius value |
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| 370 | */ |
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| 371 | static PyObject * calculate_ER(CVesicleModel *self) { |
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| 372 | |
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| 373 | // Get parameters |
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| 374 | |
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[b1c3295] | 375 | // Reader parameter dictionary |
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| 376 | self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") ); |
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| 377 | self->model->thickness = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thickness") ); |
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| 378 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
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| 379 | self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") ); |
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| 380 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
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| 381 | self->model->shell_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "shell_sld") ); |
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| 382 | // Read in dispersion parameters |
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| 383 | PyObject* disp_dict; |
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| 384 | DispersionVisitor* visitor = new DispersionVisitor(); |
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| 385 | disp_dict = PyDict_GetItemString(self->dispersion, "radius"); |
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| 386 | self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict); |
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| 387 | disp_dict = PyDict_GetItemString(self->dispersion, "thickness"); |
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| 388 | self->model->thickness.dispersion->accept_as_destination(visitor, self->model->thickness.dispersion, disp_dict); |
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[5eb9154] | 389 | |
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| 390 | |
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| 391 | return Py_BuildValue("d",(*(self->model)).calculate_ER()); |
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[3d25331f] | 392 | |
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[5eb9154] | 393 | } |
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[3d25331f] | 394 | /** |
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| 395 | * Function to call to evaluate model in cartesian coordinates |
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| 396 | * @param args: input q or [qx, qy]] |
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| 397 | * @return: function value |
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| 398 | */ |
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| 399 | static PyObject * runXY(CVesicleModel *self, PyObject *args) { |
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| 400 | double qx_value, qy_value; |
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| 401 | PyObject* pars; |
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| 402 | int npars; |
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| 403 | |
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| 404 | // Get parameters |
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| 405 | |
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[b1c3295] | 406 | // Reader parameter dictionary |
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| 407 | self->model->core_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "core_sld") ); |
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| 408 | self->model->thickness = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thickness") ); |
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| 409 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
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| 410 | self->model->radius = PyFloat_AsDouble( PyDict_GetItemString(self->params, "radius") ); |
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| 411 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
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| 412 | self->model->shell_sld = PyFloat_AsDouble( PyDict_GetItemString(self->params, "shell_sld") ); |
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| 413 | // Read in dispersion parameters |
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| 414 | PyObject* disp_dict; |
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| 415 | DispersionVisitor* visitor = new DispersionVisitor(); |
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| 416 | disp_dict = PyDict_GetItemString(self->dispersion, "radius"); |
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| 417 | self->model->radius.dispersion->accept_as_destination(visitor, self->model->radius.dispersion, disp_dict); |
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| 418 | disp_dict = PyDict_GetItemString(self->dispersion, "thickness"); |
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| 419 | self->model->thickness.dispersion->accept_as_destination(visitor, self->model->thickness.dispersion, disp_dict); |
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[3d25331f] | 420 | |
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| 421 | |
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| 422 | // Get input and determine whether we have to supply a 1D or 2D return value. |
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| 423 | if ( !PyArg_ParseTuple(args,"O",&pars) ) { |
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| 424 | PyErr_SetString(CVesicleModelError, |
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| 425 | "CVesicleModel.run expects a q value."); |
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| 426 | return NULL; |
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| 427 | } |
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| 428 | |
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| 429 | // Check params |
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| 430 | if( PyList_Check(pars)==1) { |
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| 431 | |
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| 432 | // Length of list should be 2 for I(qx, qy)) |
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| 433 | npars = PyList_GET_SIZE(pars); |
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| 434 | if(npars!=2) { |
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| 435 | PyErr_SetString(CVesicleModelError, |
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| 436 | "CVesicleModel.run expects a double or a list of dimension 2."); |
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| 437 | return NULL; |
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| 438 | } |
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| 439 | // We have a vector q, get the qx and qy values at which |
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| 440 | // to evaluate I(qx,qy) |
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| 441 | qx_value = CVesicleModel_readDouble(PyList_GET_ITEM(pars,0)); |
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| 442 | qy_value = CVesicleModel_readDouble(PyList_GET_ITEM(pars,1)); |
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| 443 | return Py_BuildValue("d",(*(self->model))(qx_value,qy_value)); |
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| 444 | |
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| 445 | } else { |
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| 446 | |
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| 447 | // We have a scalar q, we will evaluate I(q) |
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| 448 | qx_value = CVesicleModel_readDouble(pars); |
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| 449 | |
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| 450 | return Py_BuildValue("d",(*(self->model))(qx_value)); |
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| 451 | } |
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| 452 | } |
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| 453 | |
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| 454 | static PyObject * reset(CVesicleModel *self, PyObject *args) { |
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[b1c3295] | 455 | |
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[3d25331f] | 456 | |
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| 457 | return Py_BuildValue("d",0.0); |
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| 458 | } |
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| 459 | |
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| 460 | static PyObject * set_dispersion(CVesicleModel *self, PyObject *args) { |
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| 461 | PyObject * disp; |
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| 462 | const char * par_name; |
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| 463 | |
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| 464 | if ( !PyArg_ParseTuple(args,"sO", &par_name, &disp) ) { |
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| 465 | PyErr_SetString(CVesicleModelError, |
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| 466 | "CVesicleModel.set_dispersion expects a DispersionModel object."); |
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| 467 | return NULL; |
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| 468 | } |
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| 469 | void *temp = PyCObject_AsVoidPtr(disp); |
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| 470 | DispersionModel * dispersion = static_cast<DispersionModel *>(temp); |
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| 471 | |
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| 472 | |
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| 473 | // Ugliness necessary to go from python to C |
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[b1c3295] | 474 | // TODO: refactor this |
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| 475 | if (!strcmp(par_name, "radius")) { |
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| 476 | self->model->radius.dispersion = dispersion; |
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| 477 | } else if (!strcmp(par_name, "thickness")) { |
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| 478 | self->model->thickness.dispersion = dispersion; |
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[3d25331f] | 479 | } else { |
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| 480 | PyErr_SetString(CVesicleModelError, |
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| 481 | "CVesicleModel.set_dispersion expects a valid parameter name."); |
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| 482 | return NULL; |
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| 483 | } |
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| 484 | |
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| 485 | DispersionVisitor* visitor = new DispersionVisitor(); |
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| 486 | PyObject * disp_dict = PyDict_New(); |
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| 487 | dispersion->accept_as_source(visitor, dispersion, disp_dict); |
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| 488 | PyDict_SetItemString(self->dispersion, par_name, disp_dict); |
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| 489 | return Py_BuildValue("i",1); |
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| 490 | } |
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| 491 | |
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| 492 | |
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| 493 | static PyMethodDef CVesicleModel_methods[] = { |
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| 494 | {"run", (PyCFunction)run , METH_VARARGS, |
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| 495 | "Evaluate the model at a given Q or Q, phi"}, |
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| 496 | {"runXY", (PyCFunction)runXY , METH_VARARGS, |
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| 497 | "Evaluate the model at a given Q or Qx, Qy"}, |
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[5eb9154] | 498 | {"calculate_ER", (PyCFunction)calculate_ER , METH_VARARGS, |
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| 499 | "Evaluate the model at a given Q or Q, phi"}, |
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[a8d6888] | 500 | |
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| 501 | {"evalDistribution", (PyCFunction)evalDistribution , METH_VARARGS, |
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| 502 | "Evaluate the model at a given Q or Qx, Qy vector "}, |
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[3d25331f] | 503 | {"reset", (PyCFunction)reset , METH_VARARGS, |
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| 504 | "Reset pair correlation"}, |
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| 505 | {"set_dispersion", (PyCFunction)set_dispersion , METH_VARARGS, |
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| 506 | "Set the dispersion model for a given parameter"}, |
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| 507 | {NULL} |
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| 508 | }; |
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| 509 | |
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| 510 | static PyTypeObject CVesicleModelType = { |
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| 511 | PyObject_HEAD_INIT(NULL) |
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| 512 | 0, /*ob_size*/ |
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| 513 | "CVesicleModel", /*tp_name*/ |
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| 514 | sizeof(CVesicleModel), /*tp_basicsize*/ |
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| 515 | 0, /*tp_itemsize*/ |
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| 516 | (destructor)CVesicleModel_dealloc, /*tp_dealloc*/ |
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| 517 | 0, /*tp_print*/ |
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| 518 | 0, /*tp_getattr*/ |
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| 519 | 0, /*tp_setattr*/ |
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| 520 | 0, /*tp_compare*/ |
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| 521 | 0, /*tp_repr*/ |
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| 522 | 0, /*tp_as_number*/ |
---|
| 523 | 0, /*tp_as_sequence*/ |
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| 524 | 0, /*tp_as_mapping*/ |
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| 525 | 0, /*tp_hash */ |
---|
| 526 | 0, /*tp_call*/ |
---|
| 527 | 0, /*tp_str*/ |
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| 528 | 0, /*tp_getattro*/ |
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| 529 | 0, /*tp_setattro*/ |
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| 530 | 0, /*tp_as_buffer*/ |
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| 531 | Py_TPFLAGS_DEFAULT | Py_TPFLAGS_BASETYPE, /*tp_flags*/ |
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| 532 | "CVesicleModel objects", /* tp_doc */ |
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| 533 | 0, /* tp_traverse */ |
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| 534 | 0, /* tp_clear */ |
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| 535 | 0, /* tp_richcompare */ |
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| 536 | 0, /* tp_weaklistoffset */ |
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| 537 | 0, /* tp_iter */ |
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| 538 | 0, /* tp_iternext */ |
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| 539 | CVesicleModel_methods, /* tp_methods */ |
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| 540 | CVesicleModel_members, /* tp_members */ |
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| 541 | 0, /* tp_getset */ |
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| 542 | 0, /* tp_base */ |
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| 543 | 0, /* tp_dict */ |
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| 544 | 0, /* tp_descr_get */ |
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| 545 | 0, /* tp_descr_set */ |
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| 546 | 0, /* tp_dictoffset */ |
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| 547 | (initproc)CVesicleModel_init, /* tp_init */ |
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| 548 | 0, /* tp_alloc */ |
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| 549 | CVesicleModel_new, /* tp_new */ |
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| 550 | }; |
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| 551 | |
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| 552 | |
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[a8d6888] | 553 | //static PyMethodDef module_methods[] = { |
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| 554 | // {NULL} |
---|
| 555 | //}; |
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[3d25331f] | 556 | |
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| 557 | /** |
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| 558 | * Function used to add the model class to a module |
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| 559 | * @param module: module to add the class to |
---|
| 560 | */ |
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| 561 | void addCVesicleModel(PyObject *module) { |
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| 562 | PyObject *d; |
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| 563 | |
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| 564 | if (PyType_Ready(&CVesicleModelType) < 0) |
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| 565 | return; |
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| 566 | |
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| 567 | Py_INCREF(&CVesicleModelType); |
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| 568 | PyModule_AddObject(module, "CVesicleModel", (PyObject *)&CVesicleModelType); |
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| 569 | |
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| 570 | d = PyModule_GetDict(module); |
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[2605da22] | 571 | static char error_name[] = "CVesicleModel.error"; |
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| 572 | CVesicleModelError = PyErr_NewException(error_name, NULL, NULL); |
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[3d25331f] | 573 | PyDict_SetItemString(d, "CVesicleModelError", CVesicleModelError); |
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| 574 | } |
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[b1c3295] | 575 | |
---|