source: sasview/sansmodels/src/sans/models/c_models/CTriaxialEllipsoidModel.cpp @ f2b843c

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Last change on this file since f2b843c was 2605da22, checked in by Mathieu Doucet <doucetm@…>, 13 years ago

Re #4 Still a few more warnings
  • Property mode set to 100644
File size: 27.5 KB
RevLine 
[5068697]1/**
2        This software was developed by the University of Tennessee as part of the
3        Distributed Data Analysis of Neutron Scattering Experiments (DANSE)
4        project funded by the US National Science Foundation.
5
6        If you use DANSE applications to do scientific research that leads to
7        publication, we ask that you acknowledge the use of the software with the
8        following sentence:
9
10        "This work benefited from DANSE software developed under NSF award DMR-0520547."
11
12        copyright 2008, University of Tennessee
13 */
14
15/** CTriaxialEllipsoidModel
16 *
17 * C extension
18 *
19 * WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY
20 *          DO NOT MODIFY THIS FILE, MODIFY triaxial_ellipsoid.h
21 *          AND RE-RUN THE GENERATOR SCRIPT
22 *
23 */
[9bd69098]24#define NO_IMPORT_ARRAY
25#define PY_ARRAY_UNIQUE_SYMBOL PyArray_API_sans
[5068697]26 
27extern "C" {
28#include <Python.h>
[9bd69098]29#include <arrayobject.h>
[5068697]30#include "structmember.h"
31#include <stdio.h>
32#include <stdlib.h>
33#include <math.h>
34#include <time.h>
35#include "triaxial_ellipsoid.h"
36}
37
38#include "models.hh"
39#include "dispersion_visitor.hh"
40
41/// Error object for raised exceptions
42static PyObject * CTriaxialEllipsoidModelError = NULL;
43
44
45// Class definition
46typedef struct {
47    PyObject_HEAD
48    /// Parameters
49    PyObject * params;
50    /// Dispersion parameters
51    PyObject * dispersion;
52    /// Underlying model object
53    TriaxialEllipsoidModel * model;
54    /// Log for unit testing
55    PyObject * log;
56} CTriaxialEllipsoidModel;
57
58
59static void
60CTriaxialEllipsoidModel_dealloc(CTriaxialEllipsoidModel* self)
61{
[71e2de7]62    Py_DECREF(self->params);
63    Py_DECREF(self->dispersion);
64    Py_DECREF(self->log);
65    delete self->model;
[5068697]66    self->ob_type->tp_free((PyObject*)self);
[b1c3295]67   
[5068697]68
69}
70
71static PyObject *
72CTriaxialEllipsoidModel_new(PyTypeObject *type, PyObject *args, PyObject *kwds)
73{
74    CTriaxialEllipsoidModel *self;
75   
76    self = (CTriaxialEllipsoidModel *)type->tp_alloc(type, 0);
77   
78    return (PyObject *)self;
79}
80
81static int
82CTriaxialEllipsoidModel_init(CTriaxialEllipsoidModel *self, PyObject *args, PyObject *kwds)
83{
84    if (self != NULL) {
85       
86        // Create parameters
87        self->params = PyDict_New();
88        self->dispersion = PyDict_New();
89        self->model = new TriaxialEllipsoidModel();
90       
[b1c3295]91        // Initialize parameter dictionary
92        PyDict_SetItemString(self->params,"scale",Py_BuildValue("d",1.000000000000));
93        PyDict_SetItemString(self->params,"axis_psi",Py_BuildValue("d",0.000000000000));
94        PyDict_SetItemString(self->params,"axis_theta",Py_BuildValue("d",57.325000000000));
95        PyDict_SetItemString(self->params,"semi_axisA",Py_BuildValue("d",35.000000000000));
96        PyDict_SetItemString(self->params,"semi_axisB",Py_BuildValue("d",100.000000000000));
97        PyDict_SetItemString(self->params,"semi_axisC",Py_BuildValue("d",400.000000000000));
98        PyDict_SetItemString(self->params,"axis_phi",Py_BuildValue("d",57.325000000000));
99        PyDict_SetItemString(self->params,"sldSolv",Py_BuildValue("d",0.000006300000));
100        PyDict_SetItemString(self->params,"background",Py_BuildValue("d",0.000000000000));
101        PyDict_SetItemString(self->params,"sldEll",Py_BuildValue("d",0.000001000000));
102        // Initialize dispersion / averaging parameter dict
103        DispersionVisitor* visitor = new DispersionVisitor();
104        PyObject * disp_dict;
105        disp_dict = PyDict_New();
106        self->model->semi_axisA.dispersion->accept_as_source(visitor, self->model->semi_axisA.dispersion, disp_dict);
107        PyDict_SetItemString(self->dispersion, "semi_axisA", disp_dict);
108        disp_dict = PyDict_New();
109        self->model->semi_axisB.dispersion->accept_as_source(visitor, self->model->semi_axisB.dispersion, disp_dict);
110        PyDict_SetItemString(self->dispersion, "semi_axisB", disp_dict);
111        disp_dict = PyDict_New();
112        self->model->semi_axisC.dispersion->accept_as_source(visitor, self->model->semi_axisC.dispersion, disp_dict);
113        PyDict_SetItemString(self->dispersion, "semi_axisC", disp_dict);
114        disp_dict = PyDict_New();
115        self->model->axis_theta.dispersion->accept_as_source(visitor, self->model->axis_theta.dispersion, disp_dict);
116        PyDict_SetItemString(self->dispersion, "axis_theta", disp_dict);
117        disp_dict = PyDict_New();
118        self->model->axis_phi.dispersion->accept_as_source(visitor, self->model->axis_phi.dispersion, disp_dict);
119        PyDict_SetItemString(self->dispersion, "axis_phi", disp_dict);
120        disp_dict = PyDict_New();
121        self->model->axis_psi.dispersion->accept_as_source(visitor, self->model->axis_psi.dispersion, disp_dict);
122        PyDict_SetItemString(self->dispersion, "axis_psi", disp_dict);
123
[5068697]124
125         
126        // Create empty log
127        self->log = PyDict_New();
128       
[b1c3295]129       
[5068697]130
131    }
132    return 0;
133}
134
[b1c3295]135static char name_params[] = "params";
136static char def_params[] = "Parameters";
137static char name_dispersion[] = "dispersion";
138static char def_dispersion[] = "Dispersion parameters";
139static char name_log[] = "log";
140static char def_log[] = "Log";
141
[5068697]142static PyMemberDef CTriaxialEllipsoidModel_members[] = {
[b1c3295]143    {name_params, T_OBJECT, offsetof(CTriaxialEllipsoidModel, params), 0, def_params},
144        {name_dispersion, T_OBJECT, offsetof(CTriaxialEllipsoidModel, dispersion), 0, def_dispersion},     
145    {name_log, T_OBJECT, offsetof(CTriaxialEllipsoidModel, log), 0, def_log},
[5068697]146    {NULL}  /* Sentinel */
147};
148
149/** Read double from PyObject
150    @param p PyObject
151    @return double
152*/
153double CTriaxialEllipsoidModel_readDouble(PyObject *p) {
154    if (PyFloat_Check(p)==1) {
155        return (double)(((PyFloatObject *)(p))->ob_fval);
156    } else if (PyInt_Check(p)==1) {
157        return (double)(((PyIntObject *)(p))->ob_ival);
158    } else if (PyLong_Check(p)==1) {
159        return (double)PyLong_AsLong(p);
160    } else {
161        return 0.0;
162    }
163}
[9bd69098]164/**
165 * Function to call to evaluate model
166 * @param args: input numpy array q[]
167 * @return: numpy array object
168 */
169 
170static PyObject *evaluateOneDim(TriaxialEllipsoidModel* model, PyArrayObject *q){
171    PyArrayObject *result;
172   
173    // Check validity of array q , q must be of dimension 1, an array of double
174    if (q->nd != 1 || q->descr->type_num != PyArray_DOUBLE)
175    {
176        //const char * message= "Invalid array: q->nd=%d,type_num=%d\n",q->nd,q->descr->type_num;
177        //PyErr_SetString(PyExc_ValueError , message);
178        return NULL;
179    }
180    result = (PyArrayObject *)PyArray_FromDims(q->nd, (int *)(q->dimensions), 
181                                                                                  PyArray_DOUBLE);
182        if (result == NULL) {
183        const char * message= "Could not create result ";
184        PyErr_SetString(PyExc_RuntimeError , message);
185                return NULL;
186        }
187         for (int i = 0; i < q->dimensions[0]; i++){
188      double q_value  = *(double *)(q->data + i*q->strides[0]);
189      double *result_value = (double *)(result->data + i*result->strides[0]);
190      *result_value =(*model)(q_value);
191        }
192    return PyArray_Return(result); 
193 }
[5068697]194
[9bd69098]195 /**
196 * Function to call to evaluate model
197 * @param args: input numpy array  [x[],y[]]
198 * @return: numpy array object
199 */
200 static PyObject * evaluateTwoDimXY( TriaxialEllipsoidModel* model, 
201                              PyArrayObject *x, PyArrayObject *y)
202 {
203    PyArrayObject *result;
[00c2141]204    int i, x_len, y_len, dims[1];
[9bd69098]205    //check validity of input vectors
[3080527]206    if (x->nd != 1 || x->descr->type_num != PyArray_DOUBLE
207        || y->nd != 1 || y->descr->type_num != PyArray_DOUBLE
208        || y->dimensions[0] != x->dimensions[0]){
[9bd69098]209        const char * message= "evaluateTwoDimXY  expect 2 numpy arrays";
210        PyErr_SetString(PyExc_ValueError , message); 
211        return NULL;
212    }
213   
214        if (PyArray_Check(x) && PyArray_Check(y)) {
[a8d6888]215               
[3080527]216            x_len = dims[0]= x->dimensions[0];
[9ce41c6]217        y_len = dims[0]= y->dimensions[0];
[9bd69098]218           
219            // Make a new double matrix of same dims
[3080527]220        result=(PyArrayObject *) PyArray_FromDims(1,dims,NPY_DOUBLE);
[9bd69098]221        if (result == NULL){
222            const char * message= "Could not create result ";
223        PyErr_SetString(PyExc_RuntimeError , message);
224            return NULL;
225            }
226       
227        /* Do the calculation. */
[3080527]228        for ( i=0; i< x_len; i++) {
229            double x_value = *(double *)(x->data + i*x->strides[0]);
230                    double y_value = *(double *)(y->data + i*y->strides[0]);
231                        double *result_value = (double *)(result->data +
232                              i*result->strides[0]);
233                        *result_value = (*model)(x_value, y_value);
234        }           
[9bd69098]235        return PyArray_Return(result); 
236       
237        }else{
238                    PyErr_SetString(CTriaxialEllipsoidModelError, 
239                   "CTriaxialEllipsoidModel.evaluateTwoDimXY couldn't run.");
240                return NULL;
241                }       
242}
243/**
244 *  evalDistribution function evaluate a model function with input vector
245 *  @param args: input q as vector or [qx, qy] where qx, qy are vectors
246 *
247 */ 
248static PyObject * evalDistribution(CTriaxialEllipsoidModel *self, PyObject *args){
249        PyObject *qx, *qy;
250        PyArrayObject * pars;
251        int npars ,mpars;
252       
253        // Get parameters
254       
[b1c3295]255            // Reader parameter dictionary
256    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
257    self->model->axis_psi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_psi") );
258    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
259    self->model->semi_axisA = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisA") );
260    self->model->semi_axisB = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisB") );
261    self->model->semi_axisC = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisC") );
262    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
263    self->model->sldSolv = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldSolv") );
264    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
265    self->model->sldEll = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldEll") );
266    // Read in dispersion parameters
267    PyObject* disp_dict;
268    DispersionVisitor* visitor = new DispersionVisitor();
269    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisA");
270    self->model->semi_axisA.dispersion->accept_as_destination(visitor, self->model->semi_axisA.dispersion, disp_dict);
271    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisB");
272    self->model->semi_axisB.dispersion->accept_as_destination(visitor, self->model->semi_axisB.dispersion, disp_dict);
273    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisC");
274    self->model->semi_axisC.dispersion->accept_as_destination(visitor, self->model->semi_axisC.dispersion, disp_dict);
275    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
276    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
277    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
278    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
279    disp_dict = PyDict_GetItemString(self->dispersion, "axis_psi");
280    self->model->axis_psi.dispersion->accept_as_destination(visitor, self->model->axis_psi.dispersion, disp_dict);
[9bd69098]281
282       
283        // Get input and determine whether we have to supply a 1D or 2D return value.
284        if ( !PyArg_ParseTuple(args,"O",&pars) ) {
285            PyErr_SetString(CTriaxialEllipsoidModelError, 
286                "CTriaxialEllipsoidModel.evalDistribution expects a q value.");
287                return NULL;
288        }
289    // Check params
290       
291    if(PyArray_Check(pars)==1) {
292               
293            // Length of list should 1 or 2
294            npars = pars->nd; 
295            if(npars==1) {
296                // input is a numpy array
297                if (PyArray_Check(pars)) {
298                        return evaluateOneDim(self->model, (PyArrayObject*)pars); 
299                    }
300                }else{
301                    PyErr_SetString(CTriaxialEllipsoidModelError, 
302                   "CTriaxialEllipsoidModel.evalDistribution expect numpy array of one dimension.");
303                return NULL;
304                }
305    }else if( PyList_Check(pars)==1) {
306        // Length of list should be 2 for I(qx,qy)
307            mpars = PyList_GET_SIZE(pars); 
308            if(mpars!=2) {
309                PyErr_SetString(CTriaxialEllipsoidModelError, 
310                        "CTriaxialEllipsoidModel.evalDistribution expects a list of dimension 2.");
311                return NULL;
312            }
313             qx = PyList_GET_ITEM(pars,0);
314             qy = PyList_GET_ITEM(pars,1);
315             if (PyArray_Check(qx) && PyArray_Check(qy)) {
316                 return evaluateTwoDimXY(self->model, (PyArrayObject*)qx,
317                           (PyArrayObject*)qy);
318                 }else{
319                    PyErr_SetString(CTriaxialEllipsoidModelError, 
320                   "CTriaxialEllipsoidModel.evalDistribution expect 2 numpy arrays in list.");
321                return NULL;
322             }
323        }
[e0a8a3c]324        PyErr_SetString(CTriaxialEllipsoidModelError, 
325                   "CTriaxialEllipsoidModel.evalDistribution couln't be run.");
326        return NULL;
327       
[9bd69098]328}
[5068697]329
330/**
331 * Function to call to evaluate model
332 * @param args: input q or [q,phi]
333 * @return: function value
334 */
335static PyObject * run(CTriaxialEllipsoidModel *self, PyObject *args) {
336        double q_value, phi_value;
337        PyObject* pars;
338        int npars;
339       
340        // Get parameters
341       
[b1c3295]342            // Reader parameter dictionary
343    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
344    self->model->axis_psi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_psi") );
345    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
346    self->model->semi_axisA = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisA") );
347    self->model->semi_axisB = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisB") );
348    self->model->semi_axisC = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisC") );
349    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
350    self->model->sldSolv = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldSolv") );
351    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
352    self->model->sldEll = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldEll") );
353    // Read in dispersion parameters
354    PyObject* disp_dict;
355    DispersionVisitor* visitor = new DispersionVisitor();
356    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisA");
357    self->model->semi_axisA.dispersion->accept_as_destination(visitor, self->model->semi_axisA.dispersion, disp_dict);
358    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisB");
359    self->model->semi_axisB.dispersion->accept_as_destination(visitor, self->model->semi_axisB.dispersion, disp_dict);
360    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisC");
361    self->model->semi_axisC.dispersion->accept_as_destination(visitor, self->model->semi_axisC.dispersion, disp_dict);
362    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
363    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
364    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
365    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
366    disp_dict = PyDict_GetItemString(self->dispersion, "axis_psi");
367    self->model->axis_psi.dispersion->accept_as_destination(visitor, self->model->axis_psi.dispersion, disp_dict);
[5068697]368
369       
370        // Get input and determine whether we have to supply a 1D or 2D return value.
371        if ( !PyArg_ParseTuple(args,"O",&pars) ) {
372            PyErr_SetString(CTriaxialEllipsoidModelError, 
373                "CTriaxialEllipsoidModel.run expects a q value.");
374                return NULL;
375        }
376         
377        // Check params
378        if( PyList_Check(pars)==1) {
379               
380                // Length of list should be 2 for I(q,phi)
381            npars = PyList_GET_SIZE(pars); 
382            if(npars!=2) {
383                PyErr_SetString(CTriaxialEllipsoidModelError, 
384                        "CTriaxialEllipsoidModel.run expects a double or a list of dimension 2.");
385                return NULL;
386            }
387            // We have a vector q, get the q and phi values at which
388            // to evaluate I(q,phi)
389            q_value = CTriaxialEllipsoidModel_readDouble(PyList_GET_ITEM(pars,0));
390            phi_value = CTriaxialEllipsoidModel_readDouble(PyList_GET_ITEM(pars,1));
391            // Skip zero
392            if (q_value==0) {
393                return Py_BuildValue("d",0.0);
394            }
395                return Py_BuildValue("d",(*(self->model)).evaluate_rphi(q_value,phi_value));
396
397        } else {
398
399                // We have a scalar q, we will evaluate I(q)
400                q_value = CTriaxialEllipsoidModel_readDouble(pars);             
401               
402                return Py_BuildValue("d",(*(self->model))(q_value));
403        }       
404}
[5eb9154]405/**
406 * Function to call to calculate_ER
407 * @return: effective radius value
408 */
409static PyObject * calculate_ER(CTriaxialEllipsoidModel *self) {
[5068697]410
[5eb9154]411        // Get parameters
412       
[b1c3295]413            // Reader parameter dictionary
414    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
415    self->model->axis_psi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_psi") );
416    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
417    self->model->semi_axisA = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisA") );
418    self->model->semi_axisB = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisB") );
419    self->model->semi_axisC = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisC") );
420    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
421    self->model->sldSolv = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldSolv") );
422    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
423    self->model->sldEll = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldEll") );
424    // Read in dispersion parameters
425    PyObject* disp_dict;
426    DispersionVisitor* visitor = new DispersionVisitor();
427    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisA");
428    self->model->semi_axisA.dispersion->accept_as_destination(visitor, self->model->semi_axisA.dispersion, disp_dict);
429    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisB");
430    self->model->semi_axisB.dispersion->accept_as_destination(visitor, self->model->semi_axisB.dispersion, disp_dict);
431    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisC");
432    self->model->semi_axisC.dispersion->accept_as_destination(visitor, self->model->semi_axisC.dispersion, disp_dict);
433    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
434    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
435    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
436    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
437    disp_dict = PyDict_GetItemString(self->dispersion, "axis_psi");
438    self->model->axis_psi.dispersion->accept_as_destination(visitor, self->model->axis_psi.dispersion, disp_dict);
[5eb9154]439
440               
441        return Py_BuildValue("d",(*(self->model)).calculate_ER());
442
443}
[5068697]444/**
445 * Function to call to evaluate model in cartesian coordinates
446 * @param args: input q or [qx, qy]]
447 * @return: function value
448 */
449static PyObject * runXY(CTriaxialEllipsoidModel *self, PyObject *args) {
450        double qx_value, qy_value;
451        PyObject* pars;
452        int npars;
453       
454        // Get parameters
455       
[b1c3295]456            // Reader parameter dictionary
457    self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") );
458    self->model->axis_psi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_psi") );
459    self->model->axis_theta = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_theta") );
460    self->model->semi_axisA = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisA") );
461    self->model->semi_axisB = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisB") );
462    self->model->semi_axisC = PyFloat_AsDouble( PyDict_GetItemString(self->params, "semi_axisC") );
463    self->model->axis_phi = PyFloat_AsDouble( PyDict_GetItemString(self->params, "axis_phi") );
464    self->model->sldSolv = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldSolv") );
465    self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") );
466    self->model->sldEll = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldEll") );
467    // Read in dispersion parameters
468    PyObject* disp_dict;
469    DispersionVisitor* visitor = new DispersionVisitor();
470    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisA");
471    self->model->semi_axisA.dispersion->accept_as_destination(visitor, self->model->semi_axisA.dispersion, disp_dict);
472    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisB");
473    self->model->semi_axisB.dispersion->accept_as_destination(visitor, self->model->semi_axisB.dispersion, disp_dict);
474    disp_dict = PyDict_GetItemString(self->dispersion, "semi_axisC");
475    self->model->semi_axisC.dispersion->accept_as_destination(visitor, self->model->semi_axisC.dispersion, disp_dict);
476    disp_dict = PyDict_GetItemString(self->dispersion, "axis_theta");
477    self->model->axis_theta.dispersion->accept_as_destination(visitor, self->model->axis_theta.dispersion, disp_dict);
478    disp_dict = PyDict_GetItemString(self->dispersion, "axis_phi");
479    self->model->axis_phi.dispersion->accept_as_destination(visitor, self->model->axis_phi.dispersion, disp_dict);
480    disp_dict = PyDict_GetItemString(self->dispersion, "axis_psi");
481    self->model->axis_psi.dispersion->accept_as_destination(visitor, self->model->axis_psi.dispersion, disp_dict);
[5068697]482
483       
484        // Get input and determine whether we have to supply a 1D or 2D return value.
485        if ( !PyArg_ParseTuple(args,"O",&pars) ) {
486            PyErr_SetString(CTriaxialEllipsoidModelError, 
487                "CTriaxialEllipsoidModel.run expects a q value.");
488                return NULL;
489        }
490         
491        // Check params
492        if( PyList_Check(pars)==1) {
493               
494                // Length of list should be 2 for I(qx, qy))
495            npars = PyList_GET_SIZE(pars); 
496            if(npars!=2) {
497                PyErr_SetString(CTriaxialEllipsoidModelError, 
498                        "CTriaxialEllipsoidModel.run expects a double or a list of dimension 2.");
499                return NULL;
500            }
501            // We have a vector q, get the qx and qy values at which
502            // to evaluate I(qx,qy)
503            qx_value = CTriaxialEllipsoidModel_readDouble(PyList_GET_ITEM(pars,0));
504            qy_value = CTriaxialEllipsoidModel_readDouble(PyList_GET_ITEM(pars,1));
505            return Py_BuildValue("d",(*(self->model))(qx_value,qy_value));
506
507        } else {
508
509                // We have a scalar q, we will evaluate I(q)
510                qx_value = CTriaxialEllipsoidModel_readDouble(pars);           
511               
512                return Py_BuildValue("d",(*(self->model))(qx_value));
513        }       
514}
515
516static PyObject * reset(CTriaxialEllipsoidModel *self, PyObject *args) {
[b1c3295]517   
[5068697]518
519    return Py_BuildValue("d",0.0);
520}
521
522static PyObject * set_dispersion(CTriaxialEllipsoidModel *self, PyObject *args) {
523        PyObject * disp;
524        const char * par_name;
525
526        if ( !PyArg_ParseTuple(args,"sO", &par_name, &disp) ) {
527            PyErr_SetString(CTriaxialEllipsoidModelError,
528                "CTriaxialEllipsoidModel.set_dispersion expects a DispersionModel object.");
529                return NULL;
530        }
531        void *temp = PyCObject_AsVoidPtr(disp);
532        DispersionModel * dispersion = static_cast<DispersionModel *>(temp);
533
534
535        // Ugliness necessary to go from python to C
[b1c3295]536            // TODO: refactor this
537    if (!strcmp(par_name, "semi_axisA")) {
538        self->model->semi_axisA.dispersion = dispersion;
539    } else    if (!strcmp(par_name, "semi_axisB")) {
540        self->model->semi_axisB.dispersion = dispersion;
541    } else    if (!strcmp(par_name, "semi_axisC")) {
542        self->model->semi_axisC.dispersion = dispersion;
543    } else    if (!strcmp(par_name, "axis_theta")) {
544        self->model->axis_theta.dispersion = dispersion;
545    } else    if (!strcmp(par_name, "axis_phi")) {
546        self->model->axis_phi.dispersion = dispersion;
547    } else    if (!strcmp(par_name, "axis_psi")) {
548        self->model->axis_psi.dispersion = dispersion;
[5068697]549    } else {
550            PyErr_SetString(CTriaxialEllipsoidModelError,
551                "CTriaxialEllipsoidModel.set_dispersion expects a valid parameter name.");
552                return NULL;
553        }
554
555        DispersionVisitor* visitor = new DispersionVisitor();
556        PyObject * disp_dict = PyDict_New();
557        dispersion->accept_as_source(visitor, dispersion, disp_dict);
558        PyDict_SetItemString(self->dispersion, par_name, disp_dict);
559    return Py_BuildValue("i",1);
560}
561
562
563static PyMethodDef CTriaxialEllipsoidModel_methods[] = {
564    {"run",      (PyCFunction)run     , METH_VARARGS,
565      "Evaluate the model at a given Q or Q, phi"},
566    {"runXY",      (PyCFunction)runXY     , METH_VARARGS,
567      "Evaluate the model at a given Q or Qx, Qy"},
[5eb9154]568    {"calculate_ER",      (PyCFunction)calculate_ER     , METH_VARARGS,
569      "Evaluate the model at a given Q or Q, phi"},
[9bd69098]570     
571    {"evalDistribution",  (PyCFunction)evalDistribution , METH_VARARGS,
572      "Evaluate the model at a given Q or Qx, Qy vector "},
[5068697]573    {"reset",    (PyCFunction)reset   , METH_VARARGS,
574      "Reset pair correlation"},
575    {"set_dispersion",      (PyCFunction)set_dispersion     , METH_VARARGS,
576      "Set the dispersion model for a given parameter"},
577   {NULL}
578};
579
580static PyTypeObject CTriaxialEllipsoidModelType = {
581    PyObject_HEAD_INIT(NULL)
582    0,                         /*ob_size*/
583    "CTriaxialEllipsoidModel",             /*tp_name*/
584    sizeof(CTriaxialEllipsoidModel),             /*tp_basicsize*/
585    0,                         /*tp_itemsize*/
586    (destructor)CTriaxialEllipsoidModel_dealloc, /*tp_dealloc*/
587    0,                         /*tp_print*/
588    0,                         /*tp_getattr*/
589    0,                         /*tp_setattr*/
590    0,                         /*tp_compare*/
591    0,                         /*tp_repr*/
592    0,                         /*tp_as_number*/
593    0,                         /*tp_as_sequence*/
594    0,                         /*tp_as_mapping*/
595    0,                         /*tp_hash */
596    0,                         /*tp_call*/
597    0,                         /*tp_str*/
598    0,                         /*tp_getattro*/
599    0,                         /*tp_setattro*/
600    0,                         /*tp_as_buffer*/
601    Py_TPFLAGS_DEFAULT | Py_TPFLAGS_BASETYPE, /*tp_flags*/
602    "CTriaxialEllipsoidModel objects",           /* tp_doc */
603    0,                         /* tp_traverse */
604    0,                         /* tp_clear */
605    0,                         /* tp_richcompare */
606    0,                         /* tp_weaklistoffset */
607    0,                         /* tp_iter */
608    0,                         /* tp_iternext */
609    CTriaxialEllipsoidModel_methods,             /* tp_methods */
610    CTriaxialEllipsoidModel_members,             /* tp_members */
611    0,                         /* tp_getset */
612    0,                         /* tp_base */
613    0,                         /* tp_dict */
614    0,                         /* tp_descr_get */
615    0,                         /* tp_descr_set */
616    0,                         /* tp_dictoffset */
617    (initproc)CTriaxialEllipsoidModel_init,      /* tp_init */
618    0,                         /* tp_alloc */
619    CTriaxialEllipsoidModel_new,                 /* tp_new */
620};
621
622
[9bd69098]623//static PyMethodDef module_methods[] = {
624//    {NULL}
625//};
[5068697]626
627/**
628 * Function used to add the model class to a module
629 * @param module: module to add the class to
630 */ 
631void addCTriaxialEllipsoidModel(PyObject *module) {
632        PyObject *d;
633       
634    if (PyType_Ready(&CTriaxialEllipsoidModelType) < 0)
635        return;
636
637    Py_INCREF(&CTriaxialEllipsoidModelType);
638    PyModule_AddObject(module, "CTriaxialEllipsoidModel", (PyObject *)&CTriaxialEllipsoidModelType);
639   
640    d = PyModule_GetDict(module);
[2605da22]641    static char error_name[] = "CTriaxialEllipsoidModel.error";
642    CTriaxialEllipsoidModelError = PyErr_NewException(error_name, NULL, NULL);
[5068697]643    PyDict_SetItemString(d, "CTriaxialEllipsoidModelError", CTriaxialEllipsoidModelError);
644}
[b1c3295]645
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