1 | /** |
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2 | This software was developed by the University of Tennessee as part of the |
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3 | Distributed Data Analysis of Neutron Scattering Experiments (DANSE) |
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4 | project funded by the US National Science Foundation. |
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5 | |
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6 | If you use DANSE applications to do scientific research that leads to |
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7 | publication, we ask that you acknowledge the use of the software with the |
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8 | following sentence: |
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9 | |
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10 | "This work benefited from DANSE software developed under NSF award DMR-0520547." |
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11 | |
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12 | copyright 2008, University of Tennessee |
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13 | */ |
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14 | |
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15 | /** CReflModel |
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16 | * |
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17 | * C extension |
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18 | * |
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19 | * WARNING: THIS FILE WAS GENERATED BY WRAPPERGENERATOR.PY |
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20 | * DO NOT MODIFY THIS FILE, MODIFY refl.h |
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21 | * AND RE-RUN THE GENERATOR SCRIPT |
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22 | * |
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23 | */ |
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24 | #define NO_IMPORT_ARRAY |
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25 | #define PY_ARRAY_UNIQUE_SYMBOL PyArray_API_sans |
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26 | |
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27 | extern "C" { |
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28 | #include <Python.h> |
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29 | #include <arrayobject.h> |
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30 | #include "structmember.h" |
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31 | #include <stdio.h> |
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32 | #include <stdlib.h> |
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33 | #include <math.h> |
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34 | #include <time.h> |
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35 | #include "refl.h" |
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36 | } |
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37 | |
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38 | #include "models.hh" |
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39 | #include "dispersion_visitor.hh" |
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40 | |
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41 | /// Error object for raised exceptions |
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42 | static PyObject * CReflModelError = NULL; |
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43 | |
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44 | |
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45 | // Class definition |
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46 | typedef struct { |
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47 | PyObject_HEAD |
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48 | /// Parameters |
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49 | PyObject * params; |
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50 | /// Dispersion parameters |
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51 | PyObject * dispersion; |
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52 | /// Underlying model object |
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53 | ReflModel * model; |
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54 | /// Log for unit testing |
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55 | PyObject * log; |
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56 | } CReflModel; |
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57 | |
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58 | |
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59 | static void |
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60 | CReflModel_dealloc(CReflModel* self) |
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61 | { |
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62 | Py_DECREF(self->params); |
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63 | Py_DECREF(self->dispersion); |
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64 | Py_DECREF(self->log); |
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65 | delete self->model; |
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66 | self->ob_type->tp_free((PyObject*)self); |
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67 | |
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68 | |
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69 | } |
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70 | |
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71 | static PyObject * |
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72 | CReflModel_new(PyTypeObject *type, PyObject *args, PyObject *kwds) |
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73 | { |
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74 | CReflModel *self; |
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75 | |
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76 | self = (CReflModel *)type->tp_alloc(type, 0); |
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77 | |
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78 | return (PyObject *)self; |
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79 | } |
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80 | |
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81 | static int |
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82 | CReflModel_init(CReflModel *self, PyObject *args, PyObject *kwds) |
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83 | { |
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84 | if (self != NULL) { |
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85 | |
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86 | // Create parameters |
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87 | self->params = PyDict_New(); |
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88 | self->dispersion = PyDict_New(); |
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89 | self->model = new ReflModel(); |
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90 | |
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91 | // Initialize parameter dictionary |
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92 | PyDict_SetItemString(self->params,"sldIM_flat4",Py_BuildValue("d",0.000000000000)); |
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93 | PyDict_SetItemString(self->params,"thick_flat8",Py_BuildValue("d",100.000000000000)); |
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94 | PyDict_SetItemString(self->params,"thick_flat9",Py_BuildValue("d",100.000000000000)); |
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95 | PyDict_SetItemString(self->params,"sldIM_flat7",Py_BuildValue("d",0.000000000000)); |
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96 | PyDict_SetItemString(self->params,"sldIM_flat10",Py_BuildValue("d",0.000000000000)); |
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97 | PyDict_SetItemString(self->params,"sldIM_flat5",Py_BuildValue("d",0.000000000000)); |
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98 | PyDict_SetItemString(self->params,"thick_flat1",Py_BuildValue("d",10.000000000000)); |
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99 | PyDict_SetItemString(self->params,"thick_flat3",Py_BuildValue("d",100.000000000000)); |
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100 | PyDict_SetItemString(self->params,"n_layers",Py_BuildValue("d",1.000000000000)); |
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101 | PyDict_SetItemString(self->params,"thick_flat6",Py_BuildValue("d",100.000000000000)); |
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102 | PyDict_SetItemString(self->params,"thick_flat7",Py_BuildValue("d",100.000000000000)); |
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103 | PyDict_SetItemString(self->params,"thick_flat4",Py_BuildValue("d",100.000000000000)); |
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104 | PyDict_SetItemString(self->params,"thick_flat5",Py_BuildValue("d",100.000000000000)); |
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105 | PyDict_SetItemString(self->params,"sld_sub0",Py_BuildValue("d",0.000002070000)); |
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106 | PyDict_SetItemString(self->params,"thick_inter1",Py_BuildValue("d",1.000000000000)); |
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107 | PyDict_SetItemString(self->params,"thick_inter2",Py_BuildValue("d",1.000000000000)); |
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108 | PyDict_SetItemString(self->params,"thick_inter3",Py_BuildValue("d",1.000000000000)); |
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109 | PyDict_SetItemString(self->params,"thick_inter4",Py_BuildValue("d",1.000000000000)); |
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110 | PyDict_SetItemString(self->params,"thick_inter5",Py_BuildValue("d",1.000000000000)); |
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111 | PyDict_SetItemString(self->params,"thick_inter6",Py_BuildValue("d",1.000000000000)); |
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112 | PyDict_SetItemString(self->params,"thick_inter7",Py_BuildValue("d",1.000000000000)); |
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113 | PyDict_SetItemString(self->params,"thick_inter8",Py_BuildValue("d",1.000000000000)); |
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114 | PyDict_SetItemString(self->params,"thick_inter9",Py_BuildValue("d",1.000000000000)); |
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115 | PyDict_SetItemString(self->params,"sldIM_flat1",Py_BuildValue("d",0.000000000000)); |
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116 | PyDict_SetItemString(self->params,"scale",Py_BuildValue("d",1.000000000000)); |
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117 | PyDict_SetItemString(self->params,"sldIM_flat2",Py_BuildValue("d",0.000000000000)); |
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118 | PyDict_SetItemString(self->params,"func_inter9",Py_BuildValue("d",0.000000000000)); |
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119 | PyDict_SetItemString(self->params,"thick_inter10",Py_BuildValue("d",1.000000000000)); |
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120 | PyDict_SetItemString(self->params,"sldIM_flat3",Py_BuildValue("d",0.000000000000)); |
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121 | PyDict_SetItemString(self->params,"func_inter8",Py_BuildValue("d",0.000000000000)); |
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122 | PyDict_SetItemString(self->params,"thick_flat2",Py_BuildValue("d",100.000000000000)); |
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123 | PyDict_SetItemString(self->params,"func_inter0",Py_BuildValue("d",0.000000000000)); |
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124 | PyDict_SetItemString(self->params,"sld_medium",Py_BuildValue("d",0.000001000000)); |
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125 | PyDict_SetItemString(self->params,"func_inter2",Py_BuildValue("d",0.000000000000)); |
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126 | PyDict_SetItemString(self->params,"func_inter3",Py_BuildValue("d",0.000000000000)); |
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127 | PyDict_SetItemString(self->params,"thick_flat10",Py_BuildValue("d",100.000000000000)); |
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128 | PyDict_SetItemString(self->params,"func_inter5",Py_BuildValue("d",0.000000000000)); |
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129 | PyDict_SetItemString(self->params,"func_inter6",Py_BuildValue("d",0.000000000000)); |
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130 | PyDict_SetItemString(self->params,"func_inter7",Py_BuildValue("d",0.000000000000)); |
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131 | PyDict_SetItemString(self->params,"sld_flat4",Py_BuildValue("d",0.000003500000)); |
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132 | PyDict_SetItemString(self->params,"sld_flat5",Py_BuildValue("d",0.000004000000)); |
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133 | PyDict_SetItemString(self->params,"sld_flat6",Py_BuildValue("d",0.000003500000)); |
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134 | PyDict_SetItemString(self->params,"sld_flat7",Py_BuildValue("d",0.000004000000)); |
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135 | PyDict_SetItemString(self->params,"sld_flat1",Py_BuildValue("d",0.000004000000)); |
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136 | PyDict_SetItemString(self->params,"sld_flat2",Py_BuildValue("d",0.000003500000)); |
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137 | PyDict_SetItemString(self->params,"sld_flat3",Py_BuildValue("d",0.000004000000)); |
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138 | PyDict_SetItemString(self->params,"sldIM_flat8",Py_BuildValue("d",0.000000000000)); |
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139 | PyDict_SetItemString(self->params,"sld_flat8",Py_BuildValue("d",0.000003500000)); |
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140 | PyDict_SetItemString(self->params,"sld_flat9",Py_BuildValue("d",0.000004000000)); |
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141 | PyDict_SetItemString(self->params,"sldIM_flat9",Py_BuildValue("d",0.000000000000)); |
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142 | PyDict_SetItemString(self->params,"background",Py_BuildValue("d",0.000000000000)); |
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143 | PyDict_SetItemString(self->params,"func_inter1",Py_BuildValue("d",0.000000000000)); |
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144 | PyDict_SetItemString(self->params,"sldIM_sub0",Py_BuildValue("d",0.000000000000)); |
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145 | PyDict_SetItemString(self->params,"sldIM_medium",Py_BuildValue("d",0.000000000000)); |
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146 | PyDict_SetItemString(self->params,"sld_flat10",Py_BuildValue("d",0.000003500000)); |
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147 | PyDict_SetItemString(self->params,"thick_inter0",Py_BuildValue("d",1.000000000000)); |
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148 | PyDict_SetItemString(self->params,"sldIM_flat6",Py_BuildValue("d",0.000000000000)); |
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149 | PyDict_SetItemString(self->params,"func_inter4",Py_BuildValue("d",0.000000000000)); |
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150 | PyDict_SetItemString(self->params,"func_inter10",Py_BuildValue("d",0.000000000000)); |
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151 | // Initialize dispersion / averaging parameter dict |
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152 | DispersionVisitor* visitor = new DispersionVisitor(); |
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153 | PyObject * disp_dict; |
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154 | disp_dict = PyDict_New(); |
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155 | self->model->thick_inter0.dispersion->accept_as_source(visitor, self->model->thick_inter0.dispersion, disp_dict); |
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156 | PyDict_SetItemString(self->dispersion, "thick_inter0", disp_dict); |
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157 | |
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158 | |
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159 | |
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160 | // Create empty log |
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161 | self->log = PyDict_New(); |
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162 | |
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163 | |
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164 | |
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165 | } |
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166 | return 0; |
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167 | } |
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168 | |
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169 | static PyMemberDef CReflModel_members[] = { |
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170 | {"params", T_OBJECT, offsetof(CReflModel, params), 0, |
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171 | "Parameters"}, |
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172 | {"dispersion", T_OBJECT, offsetof(CReflModel, dispersion), 0, |
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173 | "Dispersion parameters"}, |
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174 | {"log", T_OBJECT, offsetof(CReflModel, log), 0, |
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175 | "Log"}, |
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176 | {NULL} /* Sentinel */ |
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177 | }; |
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178 | |
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179 | /** Read double from PyObject |
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180 | @param p PyObject |
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181 | @return double |
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182 | */ |
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183 | double CReflModel_readDouble(PyObject *p) { |
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184 | if (PyFloat_Check(p)==1) { |
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185 | return (double)(((PyFloatObject *)(p))->ob_fval); |
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186 | } else if (PyInt_Check(p)==1) { |
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187 | return (double)(((PyIntObject *)(p))->ob_ival); |
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188 | } else if (PyLong_Check(p)==1) { |
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189 | return (double)PyLong_AsLong(p); |
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190 | } else { |
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191 | return 0.0; |
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192 | } |
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193 | } |
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194 | /** |
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195 | * Function to call to evaluate model |
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196 | * @param args: input numpy array q[] |
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197 | * @return: numpy array object |
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198 | */ |
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199 | |
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200 | static PyObject *evaluateOneDim(ReflModel* model, PyArrayObject *q){ |
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201 | PyArrayObject *result; |
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202 | |
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203 | // Check validity of array q , q must be of dimension 1, an array of double |
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204 | if (q->nd != 1 || q->descr->type_num != PyArray_DOUBLE) |
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205 | { |
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206 | //const char * message= "Invalid array: q->nd=%d,type_num=%d\n",q->nd,q->descr->type_num; |
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207 | //PyErr_SetString(PyExc_ValueError , message); |
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208 | return NULL; |
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209 | } |
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210 | result = (PyArrayObject *)PyArray_FromDims(q->nd, (int *)(q->dimensions), |
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211 | PyArray_DOUBLE); |
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212 | if (result == NULL) { |
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213 | const char * message= "Could not create result "; |
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214 | PyErr_SetString(PyExc_RuntimeError , message); |
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215 | return NULL; |
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216 | } |
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217 | for (int i = 0; i < q->dimensions[0]; i++){ |
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218 | double q_value = *(double *)(q->data + i*q->strides[0]); |
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219 | double *result_value = (double *)(result->data + i*result->strides[0]); |
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220 | *result_value =(*model)(q_value); |
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221 | } |
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222 | return PyArray_Return(result); |
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223 | } |
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224 | |
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225 | /** |
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226 | * Function to call to evaluate model |
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227 | * @param args: input numpy array [x[],y[]] |
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228 | * @return: numpy array object |
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229 | */ |
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230 | static PyObject * evaluateTwoDimXY( ReflModel* model, |
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231 | PyArrayObject *x, PyArrayObject *y) |
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232 | { |
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233 | PyArrayObject *result; |
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234 | int i,j, x_len, y_len, dims[1]; |
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235 | //check validity of input vectors |
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236 | if (x->nd != 1 || x->descr->type_num != PyArray_DOUBLE |
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237 | || y->nd != 1 || y->descr->type_num != PyArray_DOUBLE |
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238 | || y->dimensions[0] != x->dimensions[0]){ |
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239 | const char * message= "evaluateTwoDimXY expect 2 numpy arrays"; |
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240 | PyErr_SetString(PyExc_ValueError , message); |
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241 | return NULL; |
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242 | } |
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243 | |
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244 | if (PyArray_Check(x) && PyArray_Check(y)) { |
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245 | |
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246 | x_len = dims[0]= x->dimensions[0]; |
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247 | y_len = dims[0]= y->dimensions[0]; |
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248 | |
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249 | // Make a new double matrix of same dims |
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250 | result=(PyArrayObject *) PyArray_FromDims(1,dims,NPY_DOUBLE); |
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251 | if (result == NULL){ |
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252 | const char * message= "Could not create result "; |
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253 | PyErr_SetString(PyExc_RuntimeError , message); |
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254 | return NULL; |
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255 | } |
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256 | |
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257 | /* Do the calculation. */ |
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258 | for ( i=0; i< x_len; i++) { |
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259 | double x_value = *(double *)(x->data + i*x->strides[0]); |
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260 | double y_value = *(double *)(y->data + i*y->strides[0]); |
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261 | double *result_value = (double *)(result->data + |
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262 | i*result->strides[0]); |
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263 | *result_value = (*model)(x_value, y_value); |
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264 | } |
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265 | return PyArray_Return(result); |
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266 | |
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267 | }else{ |
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268 | PyErr_SetString(CReflModelError, |
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269 | "CReflModel.evaluateTwoDimXY couldn't run."); |
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270 | return NULL; |
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271 | } |
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272 | } |
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273 | /** |
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274 | * evalDistribution function evaluate a model function with input vector |
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275 | * @param args: input q as vector or [qx, qy] where qx, qy are vectors |
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276 | * |
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277 | */ |
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278 | static PyObject * evalDistribution(CReflModel *self, PyObject *args){ |
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279 | PyObject *qx, *qy; |
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280 | PyArrayObject * pars; |
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281 | int npars ,mpars; |
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282 | |
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283 | // Get parameters |
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284 | |
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285 | // Reader parameter dictionary |
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286 | self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") ); |
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287 | self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") ); |
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288 | self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") ); |
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289 | self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") ); |
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290 | self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") ); |
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291 | self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") ); |
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292 | self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") ); |
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293 | self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") ); |
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294 | self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") ); |
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295 | self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") ); |
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296 | self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") ); |
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297 | self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") ); |
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298 | self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") ); |
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299 | self->model->sld_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_sub0") ); |
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300 | self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") ); |
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301 | self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") ); |
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302 | self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") ); |
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303 | self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") ); |
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304 | self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") ); |
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305 | self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") ); |
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306 | self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") ); |
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307 | self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") ); |
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308 | self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") ); |
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309 | self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") ); |
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310 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
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311 | self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") ); |
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312 | self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") ); |
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313 | self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") ); |
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314 | self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") ); |
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315 | self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") ); |
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316 | self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") ); |
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317 | self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") ); |
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318 | self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") ); |
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319 | self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") ); |
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320 | self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") ); |
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321 | self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") ); |
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322 | self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") ); |
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323 | self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") ); |
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324 | self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") ); |
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325 | self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") ); |
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326 | self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") ); |
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327 | self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") ); |
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328 | self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") ); |
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329 | self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") ); |
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330 | self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") ); |
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331 | self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") ); |
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332 | self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") ); |
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333 | self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") ); |
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334 | self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") ); |
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335 | self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") ); |
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336 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
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337 | self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") ); |
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338 | self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") ); |
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339 | self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") ); |
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340 | self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") ); |
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341 | self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") ); |
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342 | self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") ); |
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343 | self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") ); |
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344 | self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") ); |
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345 | // Read in dispersion parameters |
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346 | PyObject* disp_dict; |
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347 | DispersionVisitor* visitor = new DispersionVisitor(); |
---|
348 | disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0"); |
---|
349 | self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict); |
---|
350 | |
---|
351 | |
---|
352 | // Get input and determine whether we have to supply a 1D or 2D return value. |
---|
353 | if ( !PyArg_ParseTuple(args,"O",&pars) ) { |
---|
354 | PyErr_SetString(CReflModelError, |
---|
355 | "CReflModel.evalDistribution expects a q value."); |
---|
356 | return NULL; |
---|
357 | } |
---|
358 | // Check params |
---|
359 | |
---|
360 | if(PyArray_Check(pars)==1) { |
---|
361 | |
---|
362 | // Length of list should 1 or 2 |
---|
363 | npars = pars->nd; |
---|
364 | if(npars==1) { |
---|
365 | // input is a numpy array |
---|
366 | if (PyArray_Check(pars)) { |
---|
367 | return evaluateOneDim(self->model, (PyArrayObject*)pars); |
---|
368 | } |
---|
369 | }else{ |
---|
370 | PyErr_SetString(CReflModelError, |
---|
371 | "CReflModel.evalDistribution expect numpy array of one dimension."); |
---|
372 | return NULL; |
---|
373 | } |
---|
374 | }else if( PyList_Check(pars)==1) { |
---|
375 | // Length of list should be 2 for I(qx,qy) |
---|
376 | mpars = PyList_GET_SIZE(pars); |
---|
377 | if(mpars!=2) { |
---|
378 | PyErr_SetString(CReflModelError, |
---|
379 | "CReflModel.evalDistribution expects a list of dimension 2."); |
---|
380 | return NULL; |
---|
381 | } |
---|
382 | qx = PyList_GET_ITEM(pars,0); |
---|
383 | qy = PyList_GET_ITEM(pars,1); |
---|
384 | if (PyArray_Check(qx) && PyArray_Check(qy)) { |
---|
385 | return evaluateTwoDimXY(self->model, (PyArrayObject*)qx, |
---|
386 | (PyArrayObject*)qy); |
---|
387 | }else{ |
---|
388 | PyErr_SetString(CReflModelError, |
---|
389 | "CReflModel.evalDistribution expect 2 numpy arrays in list."); |
---|
390 | return NULL; |
---|
391 | } |
---|
392 | } |
---|
393 | PyErr_SetString(CReflModelError, |
---|
394 | "CReflModel.evalDistribution couln't be run."); |
---|
395 | return NULL; |
---|
396 | |
---|
397 | } |
---|
398 | |
---|
399 | /** |
---|
400 | * Function to call to evaluate model |
---|
401 | * @param args: input q or [q,phi] |
---|
402 | * @return: function value |
---|
403 | */ |
---|
404 | static PyObject * run(CReflModel *self, PyObject *args) { |
---|
405 | double q_value, phi_value; |
---|
406 | PyObject* pars; |
---|
407 | int npars; |
---|
408 | |
---|
409 | // Get parameters |
---|
410 | |
---|
411 | // Reader parameter dictionary |
---|
412 | self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") ); |
---|
413 | self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") ); |
---|
414 | self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") ); |
---|
415 | self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") ); |
---|
416 | self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") ); |
---|
417 | self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") ); |
---|
418 | self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") ); |
---|
419 | self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") ); |
---|
420 | self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") ); |
---|
421 | self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") ); |
---|
422 | self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") ); |
---|
423 | self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") ); |
---|
424 | self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") ); |
---|
425 | self->model->sld_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_sub0") ); |
---|
426 | self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") ); |
---|
427 | self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") ); |
---|
428 | self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") ); |
---|
429 | self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") ); |
---|
430 | self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") ); |
---|
431 | self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") ); |
---|
432 | self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") ); |
---|
433 | self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") ); |
---|
434 | self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") ); |
---|
435 | self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") ); |
---|
436 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
---|
437 | self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") ); |
---|
438 | self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") ); |
---|
439 | self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") ); |
---|
440 | self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") ); |
---|
441 | self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") ); |
---|
442 | self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") ); |
---|
443 | self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") ); |
---|
444 | self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") ); |
---|
445 | self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") ); |
---|
446 | self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") ); |
---|
447 | self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") ); |
---|
448 | self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") ); |
---|
449 | self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") ); |
---|
450 | self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") ); |
---|
451 | self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") ); |
---|
452 | self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") ); |
---|
453 | self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") ); |
---|
454 | self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") ); |
---|
455 | self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") ); |
---|
456 | self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") ); |
---|
457 | self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") ); |
---|
458 | self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") ); |
---|
459 | self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") ); |
---|
460 | self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") ); |
---|
461 | self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") ); |
---|
462 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
---|
463 | self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") ); |
---|
464 | self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") ); |
---|
465 | self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") ); |
---|
466 | self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") ); |
---|
467 | self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") ); |
---|
468 | self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") ); |
---|
469 | self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") ); |
---|
470 | self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") ); |
---|
471 | // Read in dispersion parameters |
---|
472 | PyObject* disp_dict; |
---|
473 | DispersionVisitor* visitor = new DispersionVisitor(); |
---|
474 | disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0"); |
---|
475 | self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict); |
---|
476 | |
---|
477 | |
---|
478 | // Get input and determine whether we have to supply a 1D or 2D return value. |
---|
479 | if ( !PyArg_ParseTuple(args,"O",&pars) ) { |
---|
480 | PyErr_SetString(CReflModelError, |
---|
481 | "CReflModel.run expects a q value."); |
---|
482 | return NULL; |
---|
483 | } |
---|
484 | |
---|
485 | // Check params |
---|
486 | if( PyList_Check(pars)==1) { |
---|
487 | |
---|
488 | // Length of list should be 2 for I(q,phi) |
---|
489 | npars = PyList_GET_SIZE(pars); |
---|
490 | if(npars!=2) { |
---|
491 | PyErr_SetString(CReflModelError, |
---|
492 | "CReflModel.run expects a double or a list of dimension 2."); |
---|
493 | return NULL; |
---|
494 | } |
---|
495 | // We have a vector q, get the q and phi values at which |
---|
496 | // to evaluate I(q,phi) |
---|
497 | q_value = CReflModel_readDouble(PyList_GET_ITEM(pars,0)); |
---|
498 | phi_value = CReflModel_readDouble(PyList_GET_ITEM(pars,1)); |
---|
499 | // Skip zero |
---|
500 | if (q_value==0) { |
---|
501 | return Py_BuildValue("d",0.0); |
---|
502 | } |
---|
503 | return Py_BuildValue("d",(*(self->model)).evaluate_rphi(q_value,phi_value)); |
---|
504 | |
---|
505 | } else { |
---|
506 | |
---|
507 | // We have a scalar q, we will evaluate I(q) |
---|
508 | q_value = CReflModel_readDouble(pars); |
---|
509 | |
---|
510 | return Py_BuildValue("d",(*(self->model))(q_value)); |
---|
511 | } |
---|
512 | } |
---|
513 | /** |
---|
514 | * Function to call to calculate_ER |
---|
515 | * @return: effective radius value |
---|
516 | */ |
---|
517 | static PyObject * calculate_ER(CReflModel *self) { |
---|
518 | |
---|
519 | PyObject* pars; |
---|
520 | int npars; |
---|
521 | |
---|
522 | // Get parameters |
---|
523 | |
---|
524 | // Reader parameter dictionary |
---|
525 | self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") ); |
---|
526 | self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") ); |
---|
527 | self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") ); |
---|
528 | self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") ); |
---|
529 | self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") ); |
---|
530 | self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") ); |
---|
531 | self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") ); |
---|
532 | self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") ); |
---|
533 | self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") ); |
---|
534 | self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") ); |
---|
535 | self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") ); |
---|
536 | self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") ); |
---|
537 | self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") ); |
---|
538 | self->model->sld_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_sub0") ); |
---|
539 | self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") ); |
---|
540 | self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") ); |
---|
541 | self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") ); |
---|
542 | self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") ); |
---|
543 | self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") ); |
---|
544 | self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") ); |
---|
545 | self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") ); |
---|
546 | self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") ); |
---|
547 | self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") ); |
---|
548 | self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") ); |
---|
549 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
---|
550 | self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") ); |
---|
551 | self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") ); |
---|
552 | self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") ); |
---|
553 | self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") ); |
---|
554 | self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") ); |
---|
555 | self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") ); |
---|
556 | self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") ); |
---|
557 | self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") ); |
---|
558 | self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") ); |
---|
559 | self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") ); |
---|
560 | self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") ); |
---|
561 | self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") ); |
---|
562 | self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") ); |
---|
563 | self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") ); |
---|
564 | self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") ); |
---|
565 | self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") ); |
---|
566 | self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") ); |
---|
567 | self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") ); |
---|
568 | self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") ); |
---|
569 | self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") ); |
---|
570 | self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") ); |
---|
571 | self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") ); |
---|
572 | self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") ); |
---|
573 | self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") ); |
---|
574 | self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") ); |
---|
575 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
---|
576 | self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") ); |
---|
577 | self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") ); |
---|
578 | self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") ); |
---|
579 | self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") ); |
---|
580 | self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") ); |
---|
581 | self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") ); |
---|
582 | self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") ); |
---|
583 | self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") ); |
---|
584 | // Read in dispersion parameters |
---|
585 | PyObject* disp_dict; |
---|
586 | DispersionVisitor* visitor = new DispersionVisitor(); |
---|
587 | disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0"); |
---|
588 | self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict); |
---|
589 | |
---|
590 | |
---|
591 | return Py_BuildValue("d",(*(self->model)).calculate_ER()); |
---|
592 | |
---|
593 | } |
---|
594 | /** |
---|
595 | * Function to call to evaluate model in cartesian coordinates |
---|
596 | * @param args: input q or [qx, qy]] |
---|
597 | * @return: function value |
---|
598 | */ |
---|
599 | static PyObject * runXY(CReflModel *self, PyObject *args) { |
---|
600 | double qx_value, qy_value; |
---|
601 | PyObject* pars; |
---|
602 | int npars; |
---|
603 | |
---|
604 | // Get parameters |
---|
605 | |
---|
606 | // Reader parameter dictionary |
---|
607 | self->model->sldIM_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat4") ); |
---|
608 | self->model->thick_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat8") ); |
---|
609 | self->model->thick_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat9") ); |
---|
610 | self->model->sldIM_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat7") ); |
---|
611 | self->model->sldIM_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat10") ); |
---|
612 | self->model->sldIM_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat5") ); |
---|
613 | self->model->thick_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat1") ); |
---|
614 | self->model->thick_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat3") ); |
---|
615 | self->model->n_layers = PyFloat_AsDouble( PyDict_GetItemString(self->params, "n_layers") ); |
---|
616 | self->model->thick_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat6") ); |
---|
617 | self->model->thick_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat7") ); |
---|
618 | self->model->thick_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat4") ); |
---|
619 | self->model->thick_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat5") ); |
---|
620 | self->model->sld_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_sub0") ); |
---|
621 | self->model->thick_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter1") ); |
---|
622 | self->model->thick_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter2") ); |
---|
623 | self->model->thick_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter3") ); |
---|
624 | self->model->thick_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter4") ); |
---|
625 | self->model->thick_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter5") ); |
---|
626 | self->model->thick_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter6") ); |
---|
627 | self->model->thick_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter7") ); |
---|
628 | self->model->thick_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter8") ); |
---|
629 | self->model->thick_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter9") ); |
---|
630 | self->model->sldIM_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat1") ); |
---|
631 | self->model->scale = PyFloat_AsDouble( PyDict_GetItemString(self->params, "scale") ); |
---|
632 | self->model->sldIM_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat2") ); |
---|
633 | self->model->func_inter9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter9") ); |
---|
634 | self->model->thick_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter10") ); |
---|
635 | self->model->sldIM_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat3") ); |
---|
636 | self->model->func_inter8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter8") ); |
---|
637 | self->model->thick_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat2") ); |
---|
638 | self->model->func_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter0") ); |
---|
639 | self->model->sld_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_medium") ); |
---|
640 | self->model->func_inter2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter2") ); |
---|
641 | self->model->func_inter3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter3") ); |
---|
642 | self->model->thick_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_flat10") ); |
---|
643 | self->model->func_inter5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter5") ); |
---|
644 | self->model->func_inter6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter6") ); |
---|
645 | self->model->func_inter7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter7") ); |
---|
646 | self->model->sld_flat4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat4") ); |
---|
647 | self->model->sld_flat5 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat5") ); |
---|
648 | self->model->sld_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat6") ); |
---|
649 | self->model->sld_flat7 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat7") ); |
---|
650 | self->model->sld_flat1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat1") ); |
---|
651 | self->model->sld_flat2 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat2") ); |
---|
652 | self->model->sld_flat3 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat3") ); |
---|
653 | self->model->sldIM_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat8") ); |
---|
654 | self->model->sld_flat8 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat8") ); |
---|
655 | self->model->sld_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat9") ); |
---|
656 | self->model->sldIM_flat9 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat9") ); |
---|
657 | self->model->background = PyFloat_AsDouble( PyDict_GetItemString(self->params, "background") ); |
---|
658 | self->model->func_inter1 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter1") ); |
---|
659 | self->model->sldIM_sub0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_sub0") ); |
---|
660 | self->model->sldIM_medium = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_medium") ); |
---|
661 | self->model->sld_flat10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sld_flat10") ); |
---|
662 | self->model->thick_inter0 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "thick_inter0") ); |
---|
663 | self->model->sldIM_flat6 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "sldIM_flat6") ); |
---|
664 | self->model->func_inter4 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter4") ); |
---|
665 | self->model->func_inter10 = PyFloat_AsDouble( PyDict_GetItemString(self->params, "func_inter10") ); |
---|
666 | // Read in dispersion parameters |
---|
667 | PyObject* disp_dict; |
---|
668 | DispersionVisitor* visitor = new DispersionVisitor(); |
---|
669 | disp_dict = PyDict_GetItemString(self->dispersion, "thick_inter0"); |
---|
670 | self->model->thick_inter0.dispersion->accept_as_destination(visitor, self->model->thick_inter0.dispersion, disp_dict); |
---|
671 | |
---|
672 | |
---|
673 | // Get input and determine whether we have to supply a 1D or 2D return value. |
---|
674 | if ( !PyArg_ParseTuple(args,"O",&pars) ) { |
---|
675 | PyErr_SetString(CReflModelError, |
---|
676 | "CReflModel.run expects a q value."); |
---|
677 | return NULL; |
---|
678 | } |
---|
679 | |
---|
680 | // Check params |
---|
681 | if( PyList_Check(pars)==1) { |
---|
682 | |
---|
683 | // Length of list should be 2 for I(qx, qy)) |
---|
684 | npars = PyList_GET_SIZE(pars); |
---|
685 | if(npars!=2) { |
---|
686 | PyErr_SetString(CReflModelError, |
---|
687 | "CReflModel.run expects a double or a list of dimension 2."); |
---|
688 | return NULL; |
---|
689 | } |
---|
690 | // We have a vector q, get the qx and qy values at which |
---|
691 | // to evaluate I(qx,qy) |
---|
692 | qx_value = CReflModel_readDouble(PyList_GET_ITEM(pars,0)); |
---|
693 | qy_value = CReflModel_readDouble(PyList_GET_ITEM(pars,1)); |
---|
694 | return Py_BuildValue("d",(*(self->model))(qx_value,qy_value)); |
---|
695 | |
---|
696 | } else { |
---|
697 | |
---|
698 | // We have a scalar q, we will evaluate I(q) |
---|
699 | qx_value = CReflModel_readDouble(pars); |
---|
700 | |
---|
701 | return Py_BuildValue("d",(*(self->model))(qx_value)); |
---|
702 | } |
---|
703 | } |
---|
704 | |
---|
705 | static PyObject * reset(CReflModel *self, PyObject *args) { |
---|
706 | |
---|
707 | |
---|
708 | return Py_BuildValue("d",0.0); |
---|
709 | } |
---|
710 | |
---|
711 | static PyObject * set_dispersion(CReflModel *self, PyObject *args) { |
---|
712 | PyObject * disp; |
---|
713 | const char * par_name; |
---|
714 | |
---|
715 | if ( !PyArg_ParseTuple(args,"sO", &par_name, &disp) ) { |
---|
716 | PyErr_SetString(CReflModelError, |
---|
717 | "CReflModel.set_dispersion expects a DispersionModel object."); |
---|
718 | return NULL; |
---|
719 | } |
---|
720 | void *temp = PyCObject_AsVoidPtr(disp); |
---|
721 | DispersionModel * dispersion = static_cast<DispersionModel *>(temp); |
---|
722 | |
---|
723 | |
---|
724 | // Ugliness necessary to go from python to C |
---|
725 | // TODO: refactor this |
---|
726 | if (!strcmp(par_name, "thick_inter0")) { |
---|
727 | self->model->thick_inter0.dispersion = dispersion; |
---|
728 | } else { |
---|
729 | PyErr_SetString(CReflModelError, |
---|
730 | "CReflModel.set_dispersion expects a valid parameter name."); |
---|
731 | return NULL; |
---|
732 | } |
---|
733 | |
---|
734 | DispersionVisitor* visitor = new DispersionVisitor(); |
---|
735 | PyObject * disp_dict = PyDict_New(); |
---|
736 | dispersion->accept_as_source(visitor, dispersion, disp_dict); |
---|
737 | PyDict_SetItemString(self->dispersion, par_name, disp_dict); |
---|
738 | return Py_BuildValue("i",1); |
---|
739 | } |
---|
740 | |
---|
741 | |
---|
742 | static PyMethodDef CReflModel_methods[] = { |
---|
743 | {"run", (PyCFunction)run , METH_VARARGS, |
---|
744 | "Evaluate the model at a given Q or Q, phi"}, |
---|
745 | {"runXY", (PyCFunction)runXY , METH_VARARGS, |
---|
746 | "Evaluate the model at a given Q or Qx, Qy"}, |
---|
747 | {"calculate_ER", (PyCFunction)calculate_ER , METH_VARARGS, |
---|
748 | "Evaluate the model at a given Q or Q, phi"}, |
---|
749 | |
---|
750 | {"evalDistribution", (PyCFunction)evalDistribution , METH_VARARGS, |
---|
751 | "Evaluate the model at a given Q or Qx, Qy vector "}, |
---|
752 | {"reset", (PyCFunction)reset , METH_VARARGS, |
---|
753 | "Reset pair correlation"}, |
---|
754 | {"set_dispersion", (PyCFunction)set_dispersion , METH_VARARGS, |
---|
755 | "Set the dispersion model for a given parameter"}, |
---|
756 | {NULL} |
---|
757 | }; |
---|
758 | |
---|
759 | static PyTypeObject CReflModelType = { |
---|
760 | PyObject_HEAD_INIT(NULL) |
---|
761 | 0, /*ob_size*/ |
---|
762 | "CReflModel", /*tp_name*/ |
---|
763 | sizeof(CReflModel), /*tp_basicsize*/ |
---|
764 | 0, /*tp_itemsize*/ |
---|
765 | (destructor)CReflModel_dealloc, /*tp_dealloc*/ |
---|
766 | 0, /*tp_print*/ |
---|
767 | 0, /*tp_getattr*/ |
---|
768 | 0, /*tp_setattr*/ |
---|
769 | 0, /*tp_compare*/ |
---|
770 | 0, /*tp_repr*/ |
---|
771 | 0, /*tp_as_number*/ |
---|
772 | 0, /*tp_as_sequence*/ |
---|
773 | 0, /*tp_as_mapping*/ |
---|
774 | 0, /*tp_hash */ |
---|
775 | 0, /*tp_call*/ |
---|
776 | 0, /*tp_str*/ |
---|
777 | 0, /*tp_getattro*/ |
---|
778 | 0, /*tp_setattro*/ |
---|
779 | 0, /*tp_as_buffer*/ |
---|
780 | Py_TPFLAGS_DEFAULT | Py_TPFLAGS_BASETYPE, /*tp_flags*/ |
---|
781 | "CReflModel objects", /* tp_doc */ |
---|
782 | 0, /* tp_traverse */ |
---|
783 | 0, /* tp_clear */ |
---|
784 | 0, /* tp_richcompare */ |
---|
785 | 0, /* tp_weaklistoffset */ |
---|
786 | 0, /* tp_iter */ |
---|
787 | 0, /* tp_iternext */ |
---|
788 | CReflModel_methods, /* tp_methods */ |
---|
789 | CReflModel_members, /* tp_members */ |
---|
790 | 0, /* tp_getset */ |
---|
791 | 0, /* tp_base */ |
---|
792 | 0, /* tp_dict */ |
---|
793 | 0, /* tp_descr_get */ |
---|
794 | 0, /* tp_descr_set */ |
---|
795 | 0, /* tp_dictoffset */ |
---|
796 | (initproc)CReflModel_init, /* tp_init */ |
---|
797 | 0, /* tp_alloc */ |
---|
798 | CReflModel_new, /* tp_new */ |
---|
799 | }; |
---|
800 | |
---|
801 | |
---|
802 | //static PyMethodDef module_methods[] = { |
---|
803 | // {NULL} |
---|
804 | //}; |
---|
805 | |
---|
806 | /** |
---|
807 | * Function used to add the model class to a module |
---|
808 | * @param module: module to add the class to |
---|
809 | */ |
---|
810 | void addCReflModel(PyObject *module) { |
---|
811 | PyObject *d; |
---|
812 | |
---|
813 | if (PyType_Ready(&CReflModelType) < 0) |
---|
814 | return; |
---|
815 | |
---|
816 | Py_INCREF(&CReflModelType); |
---|
817 | PyModule_AddObject(module, "CReflModel", (PyObject *)&CReflModelType); |
---|
818 | |
---|
819 | d = PyModule_GetDict(module); |
---|
820 | CReflModelError = PyErr_NewException("CReflModel.error", NULL, NULL); |
---|
821 | PyDict_SetItemString(d, "CReflModelError", CReflModelError); |
---|
822 | } |
---|
823 | |
---|